format-version: 1.4 data-version: 2025-12-15 ontology:como date: 27:08:2018 15:13 saved-by: jmc auto-generated-by: ONTO-PERL 1.45 [Term] id: COMO:0000000 name: term namespace: measure.ontology def: "Root of all ontological terms." [] [Term] id: COMO:0000001 name: context namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_hidden "true" xsd:boolean property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Root of all Context and Measurement Terms." [] xref: ORef: COMO:0000001 is_a: COMO:0000000 ! term [Term] id: COMO:0000002 name: experimental context namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Context describing experimental design." [] xref: ORef: COMO:0000002 is_a: COMO:0000001 ! context [Term] id: COMO:0000003 name: series type namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Context describing the purpose of a series." [] xref: ORef: COMO:0000003 is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000004 name: time series namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000003" xsd:string def: "A time series, in which a series of measurements was taken at different timepoints." [] is_a: COMO:0000003 ! series type [Term] id: COMO:0000005 name: replicate series namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000189" xsd:string property_value: valid_units_parent "UO:0000189" xsd:string def: "A replicate series, e.g., biological or technical replicates." [] is_a: COMO:0000003 ! series type [Term] id: COMO:0000006 name: condition namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A human-readable description of an experimental condition." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000007 name: method namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A description of one or more methods used in an experiment." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000008 name: algorithm parameter namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A description of one or more algorithm parameters." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000009 name: date namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A date, formatted as YYYY-MM-DD." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000010 name: time namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A time, formatted as HH:MM (see DateTime to include the date)." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000011 name: comment namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A human-readable comment." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000012 name: instrument namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A description of instrument(s) used." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000013 name: category namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "A human-readable description of a category." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000014 name: homogenized namespace: measure.ontology def: "Homogenized." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000015 name: anaerobic namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Anaerobic." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000016 name: aerobic namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Aerobic." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000017 name: undisturbed namespace: measure.ontology def: "Undisturbed." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000018 name: mathematical context namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Microtypes that provide mathematical context." [] xref: ORef: COMO:0000018 is_a: COMO:0000001 ! context [Term] id: COMO:0000019 name: normalized namespace: measure.ontology def: "Normalized; describe how in the Method or Protocol." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000020 name: relative namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Human-readable context saying what another microtype is measured relative to." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000021 name: increase namespace: measure.ontology def: "Increase." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000022 name: decrease namespace: measure.ontology def: "Decrease." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000023 name: gain namespace: measure.ontology def: "Gain." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000024 name: loss namespace: measure.ontology def: "Loss." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000025 name: nearest namespace: measure.ontology def: "Nearest." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000026 name: chemical context namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Describes the context of a molecule in a chemical reaction or experiment." [] xref: ORef: COMO:0000026 is_a: COMO:0000001 ! context [Term] id: COMO:0000027 name: molecule namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Use when the type of molecule varies along a dimension." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000028 name: reaction namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Human-readable description of a chemical reaction." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000029 name: surface type namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Human-readable description of a type of surface." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000030 name: bead type namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Human-readable description of the type of bead used in a (geo)chemical experiment." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000031 name: bead size namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Size of a bead used in a (geo)chemical experiment." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000032 name: thermodynamic context namespace: measure.ontology def: "Thermodynamic context for a reaction." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000033 name: delta-G namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000111" xsd:string def: "delta-G, a change in Gibbs Free Energy for a chemical reaction." [] is_a: COMO:0000032 ! thermodynamic context [Term] id: COMO:0000034 name: delta-H namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000111" xsd:string def: "delta-H, a change in enthalpy for a chemical reaction." [] is_a: COMO:0000032 ! thermodynamic context [Term] id: COMO:0000035 name: specific activity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Rate of reaction multiplied by the volume, divided by mass of protein." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000036 name: wavelength namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Wavelength of radiation." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000037 name: physicochemical state namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Human-readable context for the state or type of matter, e.g., dissolved, or in soil" [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000038 name: detection limit namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Detection limit for an instrument or experiment." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000039 name: biological context namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Biological Context." [] xref: ORef: COMO:0000039 is_a: COMO:0000001 ! context [Term] id: COMO:0000040 name: cell namespace: measure.ontology def: "Cell." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000041 name: colony namespace: measure.ontology def: "Colony." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000042 name: microbial strain namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Strain of microbe, or isolate ID." [] synonym: "microbial isolate" EXACT [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000043 name: microbial strain name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Strain name, for microbes that are not PEDOMETER isolates." [] is_a: COMO:0000042 ! microbial strain [Term] id: COMO:0000045 name: taxon namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Taxon." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000046 name: taxon name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Use this to describe taxa by name (use Taxon ID instead if possible)." [] is_a: COMO:0000045 ! taxon [Term] id: COMO:0000047 name: taxon ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Use this to link to defined PEDOMETER taxa." [] xref: Ref: DA:0000030.Taxon.name is_a: COMO:0000045 ! taxon [Term] id: COMO:0000048 name: media namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Media type." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000049 name: media name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Media name." [] is_a: COMO:0000048 ! media [Term] id: COMO:0000050 name: media composition namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Media composition." [] is_a: COMO:0000048 ! media [Term] id: COMO:0000052 name: media addition namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Media addition." [] is_a: COMO:0000048 ! media [Term] id: COMO:0000053 name: metabolite namespace: measure.ontology def: "Metabolite." [] is_a: COMO:0000027 ! molecule is_a: COMO:0000039 ! biological context [Term] id: COMO:0000054 name: enzyme substrate namespace: measure.ontology def: "Enzyme substrate." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000055 name: carbon source namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Carbon source used for microbial growth." [] xref: ORef:CHEBI:24431 is_a: COMO:0000054 ! enzyme substrate [Term] id: COMO:0000056 name: nitrogen source namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Nitrogen source used for microbial growth." [] xref: ORef:CHEBI:24431 is_a: COMO:0000054 ! enzyme substrate [Term] id: COMO:0000057 name: electron donor namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Electron donor used for microbial growth." [] xref: ORef:CHEBI:24431 is_a: COMO:0000054 ! enzyme substrate [Term] id: COMO:0000058 name: electron acceptor namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Electron acceptor used for microbial growth." [] xref: ORef:CHEBI:24431 is_a: COMO:0000054 ! enzyme substrate [Term] id: COMO:0000059 name: gene namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Gene." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000060 name: gene name namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Gene name, e.g., dsrA." [] xref: Ref: DA:0000034.Gene.aliases is_a: COMO:0000059 ! gene [Term] id: COMO:0000061 name: gene GI namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Gene GI." [] is_a: COMO:0000059 ! gene [Term] id: COMO:0000062 name: homologous gene namespace: measure.ontology def: "Homologous Gene." [] is_a: COMO:0000059 ! gene [Term] id: COMO:0000063 name: orthologous gene namespace: measure.ontology def: "Orthologous Gene." [] is_a: COMO:0000062 ! homologous gene [Term] id: COMO:0000064 name: paralogous gene namespace: measure.ontology def: "Paralogous Gene." [] is_a: COMO:0000062 ! homologous gene [Term] id: COMO:0000065 name: essential gene namespace: measure.ontology def: "Essential Gene." [] is_a: COMO:0000059 ! gene [Term] id: COMO:0000066 name: protein namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Protein." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000067 name: protein annotation namespace: measure.ontology def: "Protein Annotation." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000068 name: KEGG subsystem namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "KEGG Subsystem." [] xref: ORef: KEGG is_a: COMO:0000067 ! protein annotation [Term] id: COMO:0000069 name: TIGR role namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "TIGR Role." [] xref: ORef: TIGR is_a: COMO:0000067 ! protein annotation [Term] id: COMO:0000070 name: SEED subsystem namespace: measure.ontology def: "SEED Subsystem." [] is_a: COMO:0000067 ! protein annotation [Term] id: COMO:0000071 name: SEED subsystem ID namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "SEED Subsystem ID." [] is_a: COMO:0000070 ! SEED subsystem [Term] id: COMO:0000073 name: protein domain namespace: measure.ontology def: "Protein Domain." [] is_a: COMO:0000067 ! protein annotation [Term] id: COMO:0000074 name: Pfam domain namespace: measure.ontology def: "Pfam Domain." [] is_a: COMO:0000073 ! protein domain [Term] id: COMO:0000075 name: Pfam domain accession namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Pfam Domain Accession." [] xref: ORef: Pfam is_a: COMO:0000074 ! Pfam domain [Term] id: COMO:0000076 name: operon namespace: measure.ontology def: "Operon." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000077 name: ribosome namespace: measure.ontology def: "Ribosome." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000078 name: growth parameter namespace: measure.ontology def: "Growth Parameter." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000079 name: growth rate namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000280" xsd:string def: "Growth Rate." [] is_a: COMO:0000078 ! growth parameter [Term] id: COMO:0000080 name: doubling time namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000003" xsd:string def: "Doubling Time." [] is_a: COMO:0000078 ! growth parameter [Term] id: COMO:0000081 name: time since inoculation namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000003" xsd:string def: "Time Since Inoculation." [] is_a: COMO:0000078 ! growth parameter [Term] id: COMO:0000082 name: growth efficiency namespace: measure.ontology def: "Growth Efficiency." [] is_a: COMO:0000078 ! growth parameter [Term] id: COMO:0000083 name: gene regulation namespace: measure.ontology def: "Gene Regulation." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000084 name: up-regulated namespace: measure.ontology def: "Up-regulated." [] is_a: COMO:0000083 ! gene regulation [Term] id: COMO:0000085 name: down-regulated namespace: measure.ontology def: "Down-regulated." [] is_a: COMO:0000083 ! gene regulation [Term] id: COMO:0000086 name: transcription factor namespace: measure.ontology def: "Transcription Factor." [] is_a: COMO:0000083 ! gene regulation [Term] id: COMO:0000087 name: motif namespace: measure.ontology def: "Motif." [] is_a: COMO:0000083 ! gene regulation [Term] id: COMO:0000088 name: binding site namespace: measure.ontology def: "Binding Site." [] is_a: COMO:0000083 ! gene regulation [Term] id: COMO:0000089 name: regulon namespace: measure.ontology def: "Regulon." [] is_a: COMO:0000083 ! gene regulation [Term] id: COMO:0000090 name: taxonomic level namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Taxonomic Level." [] xref: ORef: COMO:0000090 is_a: COMO:0000039 ! biological context [Term] id: COMO:0000091 name: strain change namespace: measure.ontology def: "Strain Change." [] synonym: "mutation" EXACT [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000092 name: strain change effect namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Strain Change Effect." [] xref: ORef: COMO:0000092 is_a: COMO:0000091 ! strain change [Term] id: COMO:0000093 name: synonymous namespace: measure.ontology def: "Synonymous." [] is_a: COMO:0000092 ! strain change effect [Term] id: COMO:0000094 name: non-synonymous namespace: measure.ontology def: "Non-Synonymous." [] is_a: COMO:0000092 ! strain change effect [Term] id: COMO:0000095 name: frameshift namespace: measure.ontology def: "Frameshift." [] is_a: COMO:0000092 ! strain change effect [Term] id: COMO:0000096 name: stop namespace: measure.ontology def: "Stop." [] is_a: COMO:0000092 ! strain change effect [Term] id: COMO:0000097 name: knockout namespace: measure.ontology def: "Knockout." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000098 name: environment namespace: measure.ontology def: "Environment." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000099 name: environmental sample location namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Sample Location." [] synonym: "borehole" EXACT [] synonym: "core" EXACT [] synonym: "well" EXACT [] is_a: COMO:0000098 ! environment [Term] id: COMO:0000100 name: environmental sample namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Sample." [] is_a: COMO:0000098 ! environment [Term] id: COMO:0000101 name: environmental sample name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Sample Name." [] is_a: COMO:0000100 ! environmental sample [Term] id: COMO:0000103 name: environmental parameter namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Parameter." [] is_a: COMO:0000098 ! environment [Term] id: COMO:0000104 name: ecology namespace: measure.ontology def: "Ecology." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000105 name: community assembly process namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Community Assembly Process." [] xref: ORef: COMO:0000105 is_a: COMO:0000104 ! ecology [Term] id: COMO:0000106 name: variable selection namespace: measure.ontology def: "Variable Selection." [] is_a: COMO:0000105 ! community assembly process [Term] id: COMO:0000107 name: homogenous selection namespace: measure.ontology def: "Homogenous Selection." [] is_a: COMO:0000105 ! community assembly process [Term] id: COMO:0000108 name: dispersal limitation namespace: measure.ontology def: "Dispersal Limitation." [] is_a: COMO:0000105 ! community assembly process [Term] id: COMO:0000109 name: homogenizing dispersal namespace: measure.ontology def: "Homogenizing Dispersal." [] is_a: COMO:0000105 ! community assembly process [Term] id: COMO:0000110 name: undominated namespace: measure.ontology def: "Undominated." [] is_a: COMO:0000105 ! community assembly process [Term] id: COMO:0000111 name: sequencing namespace: measure.ontology def: "Sequencing." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000112 name: read type namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Read Type." [] xref: ORef: COMO:0000112 is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000113 name: paired end read namespace: measure.ontology def: "Paired End Read." [] is_a: COMO:0000112 ! read type [Term] id: COMO:0000114 name: single end read namespace: measure.ontology def: "Single End Read." [] is_a: COMO:0000112 ! read type [Term] id: COMO:0000115 name: base pair namespace: measure.ontology def: "Base Pair." [] is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000116 name: sequencing technology namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Sequencing Technology." [] xref: ORef: COMO:0000116 is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000117 name: Illumina namespace: measure.ontology def: "Illumina." [] is_a: COMO:0000116 ! sequencing technology [Term] id: COMO:0000118 name: PacBio namespace: measure.ontology def: "PacBio." [] is_a: COMO:0000116 ! sequencing technology [Term] id: COMO:0000119 name: GC content namespace: measure.ontology def: "GC content." [] is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000120 name: measurement namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Measurement." [] xref: ORef: COMO:0000120 is_a: COMO:0000000 ! term is_a: COMO:0000001 ! context [Term] id: COMO:0000121 name: pH namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000196 UO:0000247" xsd:string def: "pH." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000122 name: time elapsed namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000003" xsd:string def: "Time Elapsed." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000123 name: temperature namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000005" xsd:string def: "Temperature." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000124 name: conductivity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000262" xsd:string def: "Conductivity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000125 name: redox potential namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000217" xsd:string def: "Redox Potential." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000126 name: count namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000189 UO:0000200" xsd:string property_value: valid_units_parent "UO:0000189 UO:0000200" xsd:string def: "Count." [] synonym: "absolute abundance" EXACT [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000127 name: optical density namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000186" xsd:string property_value: valid_units_parent "UO:0000186" xsd:string def: "Optical Density." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000128 name: size namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000095 UO:0000001" xsd:string def: "Size." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000129 name: concentration namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000187 UO:0000322" xsd:string property_value: valid_units_parent "UO:0000051 UO:0000052 UO:0000166 UO:0000187" xsd:string def: "Concentration." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000130 name: hybridization intensity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Hybridization Intensity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000131 name: expression level namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Expression Level." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000132 name: enzyme activity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Enzyme Activity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000133 name: absorbance namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Absorbance." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000134 name: heat namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Heat." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000135 name: mass namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000002" xsd:string def: "Mass." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000137 name: fitness score namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "COMO:0000379" xsd:string def: "Fitness Score." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000138 name: genetic interaction score namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Genetic Interaction Score." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000139 name: stoichiometric ratio namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Stoichiometric Ratio." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000140 name: relative abundance namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0010006" xsd:string property_value: valid_units_parent "UO:0000189" xsd:string def: "Relative amounts of multiple categories of the same object." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000141 name: binary namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Binary." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000142 name: growth namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Boolean property indicating whether something (e.g., an isolate) grows." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000143 name: activity namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Boolean property indicating whether something (e.g., an isolate) is active." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000144 name: presence namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Boolean property indicating whether something (e.g., an isolate) is present." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000145 name: essentiality namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Boolean property indicating whether something (e.g., a gene) is essential." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000146 name: statistic namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Statistic." [] xref: ORef: COMO:0000146 is_a: COMO:0000000 ! term is_a: COMO:0000001 ! context [Term] id: COMO:0000147 name: average namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Average." [] synonym: "mean" EXACT [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000148 name: difference namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Difference." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000149 name: standard deviation namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Standard Deviation." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000150 name: standard error namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Standard Error." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000151 name: minimum namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Minimum." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000152 name: maximum namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Maximum." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000153 name: median namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Median." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000154 name: ratio namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Ratio." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000155 name: log ratio namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Log Ratio." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000156 name: p value namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "p Value." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000157 name: T score namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "T Score." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000158 name: frequency namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Frequency." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000159 name: fold enrichment namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Fold Enrichment." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000160 name: confidence namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0010006" xsd:string def: "Confidence." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000161 name: evaluation namespace: measure.ontology def: "Evaluation." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000162 name: precision namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Precision." [] is_a: COMO:0000161 ! evaluation [Term] id: COMO:0000163 name: recall namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Recall." [] is_a: COMO:0000161 ! evaluation [Term] id: COMO:0000164 name: true positive namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "True Positive." [] synonym: "TP" EXACT [] is_a: COMO:0000161 ! evaluation [Term] id: COMO:0000165 name: false positive namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "False Positive." [] synonym: "FP" EXACT [] is_a: COMO:0000161 ! evaluation [Term] id: COMO:0000166 name: true negative namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "True Negative." [] synonym: "TN" EXACT [] is_a: COMO:0000161 ! evaluation [Term] id: COMO:0000167 name: false negative namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "False Negative." [] synonym: "FN" EXACT [] is_a: COMO:0000161 ! evaluation [Term] id: COMO:0000168 name: correlation namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Correlation." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000169 name: Pearson namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Pearson." [] is_a: COMO:0000168 ! correlation [Term] id: COMO:0000170 name: Spearman namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Spearman." [] is_a: COMO:0000168 ! correlation [Term] id: COMO:0000171 name: Kendall tau namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Kendall tau." [] is_a: COMO:0000168 ! correlation [Term] id: COMO:0000172 name: Goodman and Kruskal's gamma namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Goodman and Kruskal's gamma." [] is_a: COMO:0000168 ! correlation [Term] id: COMO:0000173 name: multivariate analysis namespace: measure.ontology def: "Multivariate Analysis." [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000174 name: factor analysis namespace: measure.ontology def: "Factor Analysis." [] is_a: COMO:0000173 ! multivariate analysis [Term] id: COMO:0000175 name: factor namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Factor." [] is_a: COMO:0000174 ! factor analysis [Term] id: COMO:0000176 name: factor loading namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Factor Loading." [] is_a: COMO:0000174 ! factor analysis [Term] id: COMO:0000177 name: principal component analysis namespace: measure.ontology def: "Principal Component Analysis." [] is_a: COMO:0000173 ! multivariate analysis [Term] id: COMO:0000178 name: principal component namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Principal Component." [] is_a: COMO:0000177 ! principal component analysis [Term] id: COMO:0000179 name: component weight namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Component Weight." [] is_a: COMO:0000177 ! principal component analysis [Term] id: COMO:0000180 name: datetime namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "DateTime." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000181 name: pressure namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000109" xsd:string def: "Pressure." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000182 name: turbidity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000315" xsd:string property_value: valid_units_parent "UO:0000315" xsd:string def: "Turbidity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000183 name: reagent namespace: measure.ontology def: "Reagent." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000184 name: OTU namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "OTU." [] synonym: "operational taxonomic unit" EXACT [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000185 name: ASV namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "ASV." [] synonym: "amplicon sequence variant" EXACT [] synonym: "ESV" EXACT [] synonym: "exact sequence variant" EXACT [] synonym: "sub-OTU" EXACT [] synonym: "unique sequence variant" EXACT [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000186 name: strand namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Strand of DNA" [] xref: ORef: COMO:0000186 is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000187 name: forward namespace: measure.ontology def: "Forward." [] is_a: COMO:0000186 ! strand [Term] id: COMO:0000188 name: reverse complement namespace: measure.ontology def: "Reverse Complement." [] is_a: COMO:0000186 ! strand [Term] id: COMO:0000189 name: sequence type namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Sequence Type." [] xref: ORef: COMO:0000189 is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000190 name: 16S sequence namespace: measure.ontology def: "16S Sequence." [] is_a: COMO:0000189 ! sequence type [Term] id: COMO:0000191 name: 18S sequence namespace: measure.ontology def: "18S Sequence." [] is_a: COMO:0000189 ! sequence type [Term] id: COMO:0000192 name: ITS sequence namespace: measure.ontology def: "ITS Sequence." [] is_a: COMO:0000189 ! sequence type [Term] id: COMO:0000193 name: ITS-1 sequence namespace: measure.ontology def: "ITS-1 Sequence." [] is_a: COMO:0000192 ! ITS sequence [Term] id: COMO:0000194 name: ITS-2 sequence namespace: measure.ontology def: "ITS-2 Sequence." [] is_a: COMO:0000192 ! ITS sequence [Term] id: COMO:0000195 name: genome sequence namespace: measure.ontology def: "Genome Sequence." [] is_a: COMO:0000189 ! sequence type [Term] id: COMO:0000196 name: insertion namespace: measure.ontology def: "Insertion." [] is_a: COMO:0000091 ! strain change is_a: COMO:0000227 ! strain change type [Term] id: COMO:0000197 name: deletion namespace: measure.ontology def: "Deletion." [] is_a: COMO:0000091 ! strain change is_a: COMO:0000227 ! strain change type [Term] id: COMO:0000198 name: substitution namespace: measure.ontology def: "Substitution." [] is_a: COMO:0000091 ! strain change is_a: COMO:0000227 ! strain change type [Term] id: COMO:0000200 name: condition ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Condition, chosen from list of defined experimental conditions in the Data Clearinghouse." [] xref: Ref: DA:0000036.Condition.name is_a: COMO:0000006 ! condition [Term] id: COMO:0000201 name: time zone namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Time Zone, e.g., PDT" [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000202 name: description namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Description." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000203 name: link namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Link to other data, e.g., a DOI or URL." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000204 name: experimental process namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Category of experimental process used to create a dataset." [] xref: ORef: PROCESS:0000001 is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000205 name: person namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Name of a person. Note that PEDOMETER people should be listed as 'PEDOMETER personnel' instead." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000206 name: campaign namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Campaign." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000207 name: input namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Input." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000208 name: output namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Output." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000209 name: physical context namespace: measure.ontology def: "Physical Context." [] is_a: COMO:0000001 ! context [Term] id: COMO:0000210 name: location namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Location." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000211 name: latitude namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000185" xsd:string def: "Latitude." [] is_a: COMO:0000210 ! location [Term] id: COMO:0000212 name: longitude namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000185" xsd:string def: "Longitude." [] is_a: COMO:0000210 ! location [Term] id: COMO:0000213 name: continent namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Continent." [] is_a: COMO:0000210 ! location [Term] id: COMO:0000214 name: country namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Country." [] is_a: COMO:0000210 ! location [Term] id: COMO:0000215 name: region namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Region." [] is_a: COMO:0000210 ! location [Term] id: COMO:0000216 name: biome namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Biome." [] xref: ORef: ENVO:01000254 is_a: COMO:0000210 ! location [Term] id: COMO:0000217 name: environmental feature namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Feature." [] xref: ORef: ENVO:00002297 is_a: COMO:0000210 ! location [Term] id: COMO:0000218 name: distance namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Distance. Add context indicating reference points, e.g., From and To." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000219 name: depth namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Depth. Add context indicating reference poitns, e.g., Top and Bottom." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000220 name: elevation namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Elevation. Add context indicating reference poitns, e.g., Top and Bottom." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000221 name: OTU name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "OTU Name." [] is_a: COMO:0000184 ! OTU [Term] id: COMO:0000223 name: NCBI taxon ID namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "NCBI Taxon, chosen from names in the NCBI taxonomy." [] xref: ORef: NCBITaxon:1 is_a: COMO:0000045 ! taxon [Term] id: COMO:0000224 name: gene ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Gene, chosen from list of defined genes in the Data Clearinghouse." [] xref: Ref: DA:0000034.Gene.gene_id is_a: COMO:0000059 ! gene [Term] id: COMO:0000227 name: strain change type namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Strain Change Type." [] xref: ORef: COMO:0000227 is_a: COMO:0000091 ! strain change [Term] id: COMO:0000230 name: environmental material namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Material." [] xref: ORef: ENVO:00010483 is_a: COMO:0000098 ! environment [Term] id: COMO:0000231 name: community namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Community." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000232 name: community name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Community Name." [] is_a: COMO:0000231 ! community [Term] id: COMO:0000233 name: community ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Community ID, chosen from list of defined PEDOMETER communities." [] xref: Ref: DA:0000039.Community.name is_a: COMO:0000231 ! community [Term] id: COMO:0000234 name: community type namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Community Type." [] xref: ORef: COMO:0000234 is_a: COMO:0000231 ! community [Term] id: COMO:0000235 name: isolate community namespace: measure.ontology def: "Isolate Community." [] is_a: COMO:0000234 ! community type [Term] id: COMO:0000236 name: enrichment namespace: measure.ontology def: "Enrichment." [] is_a: COMO:0000234 ! community type [Term] id: COMO:0000237 name: active fraction namespace: measure.ontology def: "Active Fraction." [] is_a: COMO:0000236 ! enrichment [Term] id: COMO:0000238 name: assemblage namespace: measure.ontology def: "Assemblage." [] is_a: COMO:0000234 ! community type [Term] id: COMO:0000239 name: consortium namespace: measure.ontology def: "Consortium." [] is_a: COMO:0000238 ! assemblage [Term] id: COMO:0000240 name: contig namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Contig." [] is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000241 name: sequence position namespace: measure.ontology def: "Sequence Position." [] is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000242 name: sequence start namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000244" xsd:string property_value: valid_units_parent "UO:0000244" xsd:string def: "Sequence Start." [] is_a: COMO:0000241 ! sequence position [Term] id: COMO:0000243 name: sequence stop namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000244" xsd:string property_value: valid_units_parent "UO:0000244" xsd:string def: "Sequence Stop." [] is_a: COMO:0000241 ! sequence position [Term] id: COMO:0000244 name: sequence length namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000244" xsd:string property_value: valid_units_parent "UO:0000244" xsd:string def: "Sequence Length." [] is_a: COMO:0000241 ! sequence position [Term] id: COMO:0000245 name: genome namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Genome." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000246 name: genome ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Genome ID, chosen from list of annotated PEDOMETER genomes." [] xref: Ref: DA:0000033.Genome.name is_a: COMO:0000245 ! genome [Term] id: COMO:0000247 name: read set namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Read Set." [] synonym: "reads" EXACT [] is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000248 name: reads ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Reads ID, chosen from list of reads in the Data Clearinghouse." [] xref: Ref: DA:0000042.Reads.name is_a: COMO:0000247 ! read set [Term] id: COMO:0000249 name: read namespace: measure.ontology def: "Read." [] is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000250 name: gene annotation namespace: measure.ontology def: "Gene Annotation." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000251 name: kingdom namespace: measure.ontology def: "Kingdom." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000252 name: phylum namespace: measure.ontology def: "Phylum." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000253 name: class namespace: measure.ontology def: "Class." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000254 name: order namespace: measure.ontology def: "Order." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000255 name: family namespace: measure.ontology def: "Family." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000256 name: genus namespace: measure.ontology def: "Genus." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000257 name: species namespace: measure.ontology def: "Species." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000258 name: environmental chemical namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Chemical." [] xref: ORef: CHEBI:24431 is_a: COMO:0000103 ! environmental parameter [Term] id: COMO:0000259 name: environmental measurement namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Environmental Measurement." [] xref: ORef: COMO:0000120 is_a: COMO:0000103 ! environmental parameter [Term] id: COMO:0000260 name: knockout library namespace: measure.ontology def: "Knockout Library." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000261 name: Tn-Seq library namespace: measure.ontology def: "Tn-Seq Library." [] is_a: COMO:0000260 ! knockout library [Term] id: COMO:0000262 name: Tn-Seq library name namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Tn-Seq Library Name." [] xref: Ref: DA:0000047.TnSeq_Library.name is_a: COMO:0000261 ! Tn-Seq library [Term] id: COMO:0000263 name: Tn-Seq primers model namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Tn-Seq Primers Model." [] is_a: COMO:0000261 ! Tn-Seq library [Term] id: COMO:0000264 name: rate namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Rate." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000279 name: assembly namespace: measure.ontology def: "Assembly." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000280 name: assembly ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Assembly ID, chosen from list of PEDOMETER assemblies." [] xref: Ref: DA:0000031.Assembly.name is_a: COMO:0000279 ! assembly [Term] id: COMO:0000282 name: sequence namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Sequence." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000283 name: control namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Control." [] xref: ORef: COMO:0000283 is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000284 name: negative control namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Negative Control." [] is_a: COMO:0000283 ! control [Term] id: COMO:0000285 name: positive control namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Positive Control." [] is_a: COMO:0000283 ! control [Term] id: COMO:0000286 name: replicate namespace: measure.ontology def: "Replicate." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000287 name: technical replicate namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Technical Replicate." [] is_a: COMO:0000286 ! replicate [Term] id: COMO:0000288 name: biological replicate namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Biological Replicate." [] is_a: COMO:0000286 ! replicate [Term] id: COMO:0000289 name: subsample namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Subsample." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000290 name: variable name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Variable Name." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000291 name: variable type namespace: measure.ontology def: "Variable Type." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000292 name: dimension namespace: measure.ontology def: "Dimension." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000293 name: data variables type namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_hidden "true" xsd:boolean property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Data Variables Type." [] xref: ORef: DA:0000000 is_a: COMO:0000291 ! variable type [Term] id: COMO:0000294 name: units not in UO namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_hidden "true" xsd:boolean property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Units not in UO." [] xref: ORef: COMO:0000294 is_a: COMO:0000000 ! term is_a: UO:0000000 [Term] id: COMO:0000295 name: microsiemen per centimeter namespace: measure.ontology def: "microsiemen per centimeter." [] synonym: "microsiemen per cm" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000262 [Term] id: COMO:0000299 name: explained variance namespace: measure.ontology def: "Explained Variance." [] is_a: COMO:0000177 ! principal component analysis [Term] id: COMO:0000300 name: phase namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Phase of matter, e.g., solid." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000301 name: specific conductivity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000262" xsd:string def: "Specific Conductivity." [] is_a: COMO:0000124 ! conductivity [Term] id: COMO:0000302 name: salinity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "COMO:0000378" xsd:string def: "Salinity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000303 name: resistivity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "COMO:0000377" xsd:string def: "Resistivity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000304 name: saturation namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0010006" xsd:string def: "Saturation." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000305 name: density namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000182" xsd:string def: "Density." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000306 name: partial pressure namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000109" xsd:string def: "Partial Pressure." [] is_a: COMO:0000181 ! pressure [Term] id: COMO:0000307 name: torr namespace: measure.ontology def: "torr." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000109 [Term] id: COMO:0000308 name: ohm-cm namespace: measure.ontology def: "ohm-cm." [] is_a: COMO:0000377 ! resistivity unit [Term] id: COMO:0000309 name: practical salinity unit namespace: measure.ontology def: "practical salinity unit." [] synonym: "PSU" EXACT [] is_a: COMO:0000378 ! salinity unit [Term] id: COMO:0000311 name: top namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Use as context for locations, e.g., the top end of a depth measurement." [] is_a: COMO:0000339 ! position [Term] id: COMO:0000312 name: bottom namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Use as context for locations, e.g., the bottom end of a depth measurement." [] is_a: COMO:0000339 ! position [Term] id: COMO:0000313 name: charge namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000187" xsd:string property_value: valid_units_parent "UO:0000217 UO:0000187" xsd:string def: "Charge." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000314 name: air pressure namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000109" xsd:string def: "Air Pressure." [] is_a: COMO:0000181 ! pressure [Term] id: COMO:0000315 name: water pressure namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000109" xsd:string def: "Water Pressure." [] is_a: COMO:0000181 ! pressure [Term] id: COMO:0000316 name: wind speed namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000060" xsd:string def: "Wind Speed." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000317 name: gust speed namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000060" xsd:string def: "Gust Speed." [] is_a: COMO:0000316 ! wind speed [Term] id: COMO:0000318 name: solar radiation namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000154" xsd:string def: "Solar Radiation." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000319 name: rainfall namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Rainfall." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000320 name: wind direction namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000185" xsd:string def: "Wind Direction." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000321 name: relative humidity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0010006" xsd:string def: "Relative Humidity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000322 name: mile per hour namespace: measure.ontology def: "mile per hour." [] synonym: "mph" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000060 [Term] id: COMO:0000324 name: m^3 per m^3 namespace: measure.ontology def: "m^3 per m^3." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000051 [Term] id: COMO:0000325 name: millibar namespace: measure.ontology def: "millibar." [] synonym: "mbar" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000109 [Term] id: COMO:0000326 name: environmental community namespace: measure.ontology def: "Environmental Community." [] is_a: COMO:0000234 ! community type [Term] id: COMO:0000327 name: protocol namespace: measure.ontology def: "Protocol." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000328 name: protocol ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Protocol, chosen from list of defined PEDOMETER protocols." [] xref: Ref: DA:0000049.Protocol.name is_a: COMO:0000327 ! protocol [Term] id: COMO:0000329 name: bin namespace: measure.ontology def: "Bin (metagenomic)." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000330 name: bin ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Bin, chosen from metagenomic bins stored in the Data Clearinghouse." [] xref: Ref: DA:0000032.Bin.name is_a: COMO:0000329 ! bin [Term] id: COMO:0000333 name: availability namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Boolean property indicating whether something is available." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000334 name: US state namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "US State." [] is_a: COMO:0000210 ! location [Term] id: COMO:0000335 name: state plane coordinate namespace: measure.ontology def: "State Plane Coordinate." [] is_a: COMO:0000210 ! location [Term] id: COMO:0000336 name: easting namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000008" xsd:string def: "Easting, in State Plane coordinates. Add a State Plane Zone for context." [] is_a: COMO:0000335 ! state plane coordinate [Term] id: COMO:0000337 name: northing namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000008" xsd:string def: "Northing, in State Plane coordinates. Add a State Plane Zone for context." [] is_a: COMO:0000335 ! state plane coordinate [Term] id: COMO:0000338 name: state plane zone namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "State Plane Zone, e.g. '4100 - Tennessee'." [] is_a: COMO:0000335 ! state plane coordinate [Term] id: COMO:0000339 name: position namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Position." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000340 name: upper namespace: measure.ontology def: "Upper." [] is_a: COMO:0000339 ! position [Term] id: COMO:0000341 name: lower namespace: measure.ontology def: "Lower." [] is_a: COMO:0000339 ! position [Term] id: COMO:0000342 name: middle namespace: measure.ontology def: "Middle." [] is_a: COMO:0000339 ! position [Term] id: COMO:0000343 name: diameter namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Diameter." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000344 name: inner diameter namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Inner Diameter." [] is_a: COMO:0000343 ! diameter [Term] id: COMO:0000345 name: outer diameter namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Outer Diameter." [] is_a: COMO:0000343 ! diameter [Term] id: COMO:0000346 name: organic namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Use as context, for example, to label inorganic or organic carbon." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000347 name: millimhos per centimeter namespace: measure.ontology def: "millimhos per centimeter." [] synonym: "mmhos per cm" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000262 [Term] id: COMO:0000348 name: parts per million by volume namespace: measure.ontology def: "parts per million by volume." [] synonym: "ppmv" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000051 [Term] id: COMO:0000349 name: nanogram per liter namespace: measure.ontology def: "nanogram per liter." [] synonym: "ng/L" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000051 [Term] id: COMO:0000350 name: molecular weight namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000221" xsd:string def: "Molecular Weight." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000351 name: taxonomic domain namespace: measure.ontology def: "Taxonomic Domain." [] is_a: COMO:0000090 ! taxonomic level [Term] id: COMO:0000352 name: milligram per gram namespace: measure.ontology def: "milligram per gram." [] synonym: "mg/g" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000051 [Term] id: COMO:0000353 name: millisiemen per centimeter namespace: measure.ontology def: "millisiemen per centimeter." [] synonym: "millisiemen per cm" EXACT [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000262 [Term] id: COMO:0000354 name: image namespace: measure.ontology def: "Image." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000357 name: MIME type namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "MIME type." [] is_a: COMO:0000013 ! category [Term] id: COMO:0000358 name: coefficient of variation namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Coefficient of Variation." [] synonym: "CV" EXACT [] is_a: COMO:0000146 ! statistic [Term] id: COMO:0000359 name: weight namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000002" xsd:string def: "Weight." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000360 name: volume namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000095" xsd:string def: "Volume." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000361 name: cells per gram namespace: measure.ontology def: "cells per gram." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000189 [Term] id: COMO:0000362 name: above namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Above." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000363 name: below namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Below." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000365 name: molecules not in ChEBI namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_hidden "true" xsd:boolean property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Molecules not in ChEBI." [] xref: ORef: COMO:0000365 is_a: CHEBI:24431 is_a: COMO:0000000 ! term [Term] id: COMO:0000366 name: sodium oxide namespace: measure.ontology def: "sodium oxide." [] synonym: "Na2O" EXACT [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000367 name: barium oxide namespace: measure.ontology def: "barium oxide." [] synonym: "BaO" EXACT [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000371 name: error range namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Error Range." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000372 name: manganese(II) oxide namespace: measure.ontology def: "manganese(II) oxide ." [] synonym: "MnO" EXACT [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000373 name: cobalt(II) oxide namespace: measure.ontology def: "cobalt(II) oxide." [] synonym: "CoO" EXACT [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000374 name: nickel(II) oxide namespace: measure.ontology def: "nickel(II) oxide." [] synonym: "NiO" EXACT [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000375 name: high namespace: measure.ontology def: "High." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000376 name: low namespace: measure.ontology def: "Low." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000377 name: resistivity unit namespace: measure.ontology def: "resistivity unit." [] is_a: COMO:0000294 ! units not in UO [Term] id: COMO:0000378 name: salinity unit namespace: measure.ontology def: "salinity unit." [] is_a: COMO:0000294 ! units not in UO [Term] id: COMO:0000379 name: log ratio unit namespace: measure.ontology def: "log ratio unit." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000190 [Term] id: COMO:0000380 name: confidence unit namespace: measure.ontology def: "confidence units are a dimensionless unit, with range from 0 to 1" [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000190 [Term] id: COMO:0000381 name: molecule from list namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Pick a molecule from a list of chemicals (preferred)." [] xref: ORef: CHEBI:24431 is_a: COMO:0000027 ! molecule [Term] id: COMO:0000382 name: PubChem molecule name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Give the name of a molecule in PubChem (use list instead if possible)." [] is_a: COMO:0000027 ! molecule [Term] id: COMO:0000383 name: molecular formula namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Describe a molecule using its molecular formula (use list instead if possible)." [] is_a: COMO:0000027 ! molecule [Term] id: COMO:0000384 name: InChIKey namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Describe a molecule using its InChIKey (use list instead if possible)." [] is_a: COMO:0000027 ! molecule [Term] id: COMO:0000385 name: ionization mode namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Ionization mode used in a mass spec experiment." [] xref: ORef: COMO:0000385 is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000386 name: positive polarity namespace: measure.ontology def: "Positive Polarity (ionization mode for MS experiment)." [] is_a: COMO:0000385 ! ionization mode [Term] id: COMO:0000387 name: negative polarity namespace: measure.ontology def: "Negative Polarity (ionization mode for MS experiment)." [] is_a: COMO:0000385 ! ionization mode [Term] id: COMO:0000388 name: usability namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Usability." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000389 name: reference compound namespace: measure.ontology def: "Reference Compound." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000390 name: ion intensity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "COMO:0000471 UO:0000313" xsd:string def: "Ion Intensity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000391 name: amount namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000006" xsd:string def: "Absolute amount of a substance, such as an element. See also: concentration." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000392 name: 1,2-dipalmitoyl-rac-glycero-3-phosphoethanolamine namespace: measure.ontology def: "1,2-dipalmitoyl-rac-glycero-3-phosphoethanolamine." [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000393 name: objects per grid window namespace: measure.ontology def: "objects per grid window." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000189 [Term] id: COMO:0000394 name: barcode namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Barcode." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000395 name: overexpression library namespace: measure.ontology def: "Overexpression Library." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000396 name: Dub-seq library namespace: measure.ontology def: "Dub-Seq Library." [] is_a: COMO:0000395 ! overexpression library [Term] id: COMO:0000398 name: genomic region namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Genomic Region." [] is_a: COMO:0000111 ! sequencing [Term] id: COMO:0000401 name: numerator namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Numerator." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000402 name: denominator namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Denominator." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000403 name: isotope ratio namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0010006 UO:0000187" xsd:string property_value: valid_units_parent "UO:0000166 UO:0000187" xsd:string def: "Isotope Ratio." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000404 name: geologic zone namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Geologic Zone." [] xref: ORef: COMO:0000404 is_a: COMO:0000209 ! physical context [Term] id: COMO:0000405 name: vadose zone namespace: measure.ontology def: "Vadose Zone." [] synonym: "unsaturated zone" EXACT [] is_a: COMO:0000404 ! geologic zone [Term] id: COMO:0000406 name: variably saturated zone namespace: measure.ontology def: "Variably Saturated Zone." [] is_a: COMO:0000404 ! geologic zone [Term] id: COMO:0000407 name: saturated zone namespace: measure.ontology def: "Saturated Zone." [] synonym: "phreatic zone" EXACT [] is_a: COMO:0000404 ! geologic zone [Term] id: COMO:0000408 name: isotope namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Isotope." [] xref: ORef: CHEBI:24431 is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000409 name: microplate name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Microplate Name." [] is_a: COMO:0000002 ! experimental context is_a: COMO:0000411 ! microplate [Term] id: COMO:0000410 name: microplate well name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Microplate Well Name." [] is_a: COMO:0000002 ! experimental context is_a: COMO:0000412 ! microplate well [Term] id: COMO:0000411 name: microplate namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Microplate." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000412 name: microplate well namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Microplate Well." [] is_a: COMO:0000411 ! microplate [Term] id: COMO:0000413 name: fold concentration namespace: measure.ontology def: "fold concentration." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000051 [Term] id: COMO:0000414 name: adenine hydrochloride hydrate namespace: measure.ontology def: "adenine hydrochloride hydrate." [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000415 name: aphotic namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Aphotic." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000416 name: growth stage namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Growth Stage." [] synonym: "growth phase" EXACT [] xref: ORef: COMO:0000416 is_a: COMO:0000039 ! biological context [Term] id: COMO:0000417 name: enrichment growth namespace: measure.ontology def: "Incubation of a sample for microbial isolation, prior to separating out microbes for picking colonies." [] synonym: "preincubation" EXACT [] is_a: COMO:0000416 ! growth stage [Term] id: COMO:0000418 name: inoculation namespace: measure.ontology def: "Inoculation." [] is_a: COMO:0000416 ! growth stage [Term] id: COMO:0000419 name: lag phase namespace: measure.ontology def: "Lag Phase." [] is_a: COMO:0000416 ! growth stage [Term] id: COMO:0000420 name: exponential phase namespace: measure.ontology def: "Exponential Phase." [] is_a: COMO:0000416 ! growth stage [Term] id: COMO:0000421 name: stationary phase namespace: measure.ontology def: "Stationary Phase." [] is_a: COMO:0000416 ! growth stage [Term] id: COMO:0000422 name: humic acid namespace: measure.ontology def: "humic acid." [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000423 name: fulvic acid namespace: measure.ontology def: "fulvic acid." [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000424 name: anthrahydroxyquinone-2,6-disulfonate namespace: measure.ontology def: "anthrahydroxyquinone-2,6-disulfonate." [] synonym: "AHDS" EXACT [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000425 name: citric-disodium phosphate namespace: measure.ontology def: "citric-disodium phosphate." [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000426 name: natural organic matter namespace: measure.ontology def: "natural organic matter." [] synonym: "NOM" EXACT [] is_a: COMO:0000365 ! molecules not in ChEBI [Term] id: COMO:0000427 name: minimal media namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Minimal Media." [] is_a: COMO:0000048 ! media [Term] id: COMO:0000428 name: CAS registry number namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "CAS Registry Number." [] is_a: COMO:0000027 ! molecule [Term] id: COMO:0000429 name: sequence identity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Sequence Identity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000430 name: sequence similarity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Sequence Similarity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000431 name: relative evolutionary divergence namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000186" xsd:string property_value: valid_units_parent "UO:0000186" xsd:string def: "Relative Evolutionary Divergence." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000432 name: publication namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Publication." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000433 name: PubMed ID namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000186" xsd:string property_value: valid_units_parent "UO:0000186" xsd:string def: "PubMed ID." [] synonym: "PMID" EXACT [] is_a: COMO:0000432 ! publication [Term] id: COMO:0000434 name: PubMed Central ID namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "PubMed Central ID." [] synonym: "PMCID" EXACT [] is_a: COMO:0000432 ! publication [Term] id: COMO:0000435 name: database namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Database." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000436 name: obsolete namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Obsolete." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000437 name: redox namespace: measure.ontology def: "Redox." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000438 name: reduction namespace: measure.ontology def: "Reduction." [] is_a: COMO:0000437 ! redox [Term] id: COMO:0000439 name: oxidation namespace: measure.ontology def: "Oxidation." [] is_a: COMO:0000437 ! redox [Term] id: COMO:0000440 name: height namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Height." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000441 name: length namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Length." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000442 name: width namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000001" xsd:string def: "Width." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000443 name: cell morphology namespace: measure.ontology def: "Cell Morphology." [] is_a: COMO:0000040 ! cell [Term] id: COMO:0000444 name: cell structure namespace: measure.ontology def: "Cell Structure." [] is_a: COMO:0000443 ! cell morphology [Term] id: COMO:0000445 name: cellular appendage namespace: measure.ontology def: "Cellular Appendage." [] is_a: COMO:0000444 ! cell structure [Term] id: COMO:0000446 name: flagella namespace: measure.ontology def: "Flagella." [] is_a: COMO:0000445 ! cellular appendage [Term] id: COMO:0000447 name: flagellar arrangement namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Flagellar Arrangement." [] xref: ORef: COMO:0000447 is_a: COMO:0000446 ! flagella [Term] id: COMO:0000448 name: monotrichous namespace: measure.ontology def: "A single flagellum extending from one end of the cell." [] is_a: COMO:0000447 ! flagellar arrangement [Term] id: COMO:0000449 name: amphitrichous namespace: measure.ontology def: "Single or multiple flagella extending from both ends of the cell." [] is_a: COMO:0000447 ! flagellar arrangement [Term] id: COMO:0000450 name: lophotrichous namespace: measure.ontology def: "Tuft of flagella extending from one end or both ends of the cell." [] is_a: COMO:0000447 ! flagellar arrangement [Term] id: COMO:0000451 name: peritrichous namespace: measure.ontology def: "Multiple flagella distributed over the entire cell." [] is_a: COMO:0000447 ! flagellar arrangement [Term] id: COMO:0000452 name: vessicle namespace: measure.ontology def: "Vessicle." [] is_a: COMO:0000444 ! cell structure [Term] id: COMO:0000453 name: S-layer namespace: measure.ontology def: "S-layer." [] is_a: COMO:0000444 ! cell structure [Term] id: COMO:0000454 name: cell membrane namespace: measure.ontology def: "Cell Membrane." [] is_a: COMO:0000444 ! cell structure [Term] id: COMO:0000455 name: cell shape namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Cell Shape." [] xref: ORef: COMO:0000455 is_a: COMO:0000443 ! cell morphology [Term] id: COMO:0000456 name: rod namespace: measure.ontology def: "Rod." [] is_a: COMO:0000455 ! cell shape [Term] id: COMO:0000457 name: rod-vibrio namespace: measure.ontology def: "Rod-vibrio." [] is_a: COMO:0000455 ! cell shape [Term] id: COMO:0000458 name: oval namespace: measure.ontology def: "Oval." [] is_a: COMO:0000455 ! cell shape [Term] id: COMO:0000459 name: irregular oval namespace: measure.ontology def: "Irregular Oval." [] is_a: COMO:0000455 ! cell shape [Term] id: COMO:0000460 name: spherical namespace: measure.ontology def: "Spherical." [] is_a: COMO:0000455 ! cell shape [Term] id: COMO:0000461 name: pleomorphic namespace: measure.ontology def: "Pleomorphic." [] is_a: COMO:0000455 ! cell shape [Term] id: COMO:0000462 name: observed namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Observed." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000463 name: genome quality namespace: measure.ontology def: "Genome Quality." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000464 name: genome completeness namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000187" xsd:string property_value: valid_units_parent "UO:0000187" xsd:string def: "Genome Completeness." [] is_a: COMO:0000463 ! genome quality [Term] id: COMO:0000465 name: genome contamination namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000187" xsd:string property_value: valid_units_parent "UO:0000187" xsd:string def: "Genome Contamination." [] is_a: COMO:0000463 ! genome quality [Term] id: COMO:0000466 name: genome N50 namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000189" xsd:string property_value: valid_units_parent "UO:0000189" xsd:string def: "Genome N50." [] is_a: COMO:0000463 ! genome quality [Term] id: COMO:0000467 name: read coverage namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000189 UO:0000187" xsd:string property_value: valid_units_parent "UO:0000189 UO:0000187" xsd:string def: "Read Coverage." [] is_a: COMO:0000463 ! genome quality [Term] id: COMO:0000468 name: index namespace: measure.ontology property_value: data_type "int" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000189" xsd:string property_value: valid_units_parent "UO:0000189" xsd:string def: "Index." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000469 name: internal standard namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Internal Standard." [] is_a: COMO:0000002 ! experimental context [Term] id: COMO:0000470 name: exact mass namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000221" xsd:string def: "Exact Mass." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000471 name: relative ion intensity unit namespace: measure.ontology def: "relative ion intensity unit." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000186 [Term] id: COMO:0000472 name: microbial strain ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Microbial Strain ID." [] synonym: "isolate ID" EXACT [] xref: Ref: DA:0000028.Microbial_Strain.name is_a: COMO:0000042 ! microbial strain [Term] id: COMO:0000473 name: ASV name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "ASV Name." [] is_a: COMO:0000185 ! ASV [Term] id: COMO:0000474 name: ASV ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "ASV ID." [] xref: Ref: DA:0000029.ASV.Name is_a: COMO:0000185 ! ASV [Term] id: COMO:0000475 name: plant transformant namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "Plant Transformant." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000476 name: plant transformant name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Plant Transformant Name." [] is_a: COMO:0000475 ! plant transformant [Term] id: COMO:0000477 name: plant transformant ID namespace: measure.ontology property_value: data_type "object_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Plant Transformant ID." [] xref: Ref: DA:0000027.Plant_Transformant.name is_a: COMO:0000475 ! plant transformant [Term] id: COMO:0000478 name: DNA construct namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean def: "DNA Construct." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000479 name: DNA construct name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "DNA Construct Name." [] is_a: COMO:0000478 ! DNA construct [Term] id: COMO:0000480 name: Jukes-Cantor distance namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "COMO:0000481" xsd:string def: "Jukes-Cantor Distance." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000481 name: substitutions per site namespace: measure.ontology def: "substitutions per site." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000186 [Term] id: COMO:0000482 name: tissue namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Tissue." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000483 name: genotype namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Genotype." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000484 name: collected namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Collected." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000485 name: soil type namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Soil Type." [] xref: ORef: COMO:0000485 is_a: COMO:0000209 ! physical context [Term] id: COMO:0000486 name: clay namespace: measure.ontology def: "Clay." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000487 name: sand namespace: measure.ontology def: "Sand." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000488 name: silt namespace: measure.ontology def: "Silt." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000489 name: rock namespace: measure.ontology def: "Rock." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000490 name: humus namespace: measure.ontology def: "Humus." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000491 name: soil namespace: measure.ontology def: "Soil." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000492 name: soil micropore namespace: measure.ontology def: "Soil Micropore." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000493 name: soil macropore namespace: measure.ontology def: "Soil Macropore." [] is_a: COMO:0000485 ! soil type [Term] id: COMO:0000494 name: equilibrium constant namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Equilibrium Constant." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000495 name: rate constant namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Rate Constant." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000496 name: specific oxidation rate namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Specific Oxidation Rate." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000497 name: precipitation type namespace: measure.ontology def: "Precipitation Type." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000498 name: rain namespace: measure.ontology def: "Rain." [] is_a: COMO:0000497 ! precipitation type [Term] id: COMO:0000499 name: snow namespace: measure.ontology def: "Snow." [] is_a: COMO:0000497 ! precipitation type [Term] id: COMO:0000500 name: irrigation namespace: measure.ontology def: "Irrigation." [] is_a: COMO:0000497 ! precipitation type [Term] id: COMO:0000501 name: plant organ namespace: measure.ontology property_value: data_type "oterm_ref" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Plant Organ." [] xref: ORef: COMO:0000501 is_a: COMO:0000039 ! biological context [Term] id: COMO:0000502 name: plant root namespace: measure.ontology def: "Plant Root." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000503 name: plant stem namespace: measure.ontology def: "Plant Stem." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000504 name: plant leaf namespace: measure.ontology def: "Plant Leaf." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000505 name: plant canopy namespace: measure.ontology def: "Plant Canopy." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000506 name: plant branch namespace: measure.ontology def: "Plant Branch." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000507 name: plant shoot namespace: measure.ontology def: "Plant Shoot." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000508 name: plant grain namespace: measure.ontology def: "Plant Grain." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000509 name: plant stalk namespace: measure.ontology def: "Plant Stalk." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000510 name: plant sheath namespace: measure.ontology def: "Plant Sheath." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000511 name: plant husk namespace: measure.ontology def: "Plant Husk." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000512 name: plant nodule namespace: measure.ontology def: "Plant Nodule." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000513 name: plant ear namespace: measure.ontology def: "Plant Ear." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000514 name: plant reserve namespace: measure.ontology def: "Plant Reserve." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000515 name: plant litter namespace: measure.ontology def: "Plant Litter." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000516 name: growth respiration efficiency namespace: measure.ontology def: "Growth Respiration Efficiency." [] is_a: COMO:0000082 ! growth efficiency [Term] id: COMO:0000517 name: growth yield namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Growth Yield." [] is_a: COMO:0000078 ! growth parameter [Term] id: COMO:0000518 name: nitrifier namespace: measure.ontology def: "Nitrifier." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000519 name: denitrifier namespace: measure.ontology def: "Denitrifier." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000520 name: ammonia oxidizer namespace: measure.ontology def: "Ammonia Oxidizer." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000521 name: nitrite oxidizer namespace: measure.ontology def: "Nitrite Oxidizer." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000522 name: methanotroph namespace: measure.ontology def: "Methanotroph." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000523 name: methanogen namespace: measure.ontology def: "Methanogen." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000524 name: acetotropic methanogen namespace: measure.ontology def: "Acetotropic Methanogen." [] is_a: COMO:0000523 ! methanogen [Term] id: COMO:0000525 name: hydrogenotrophic methanogen namespace: measure.ontology def: "Hydrogenotrophic Methanogen." [] is_a: COMO:0000523 ! methanogen [Term] id: COMO:0000526 name: heterotroph namespace: measure.ontology def: "Heterotroph." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000527 name: autotroph namespace: measure.ontology def: "Autotroph." [] is_a: COMO:0000104 ! ecology [Term] id: COMO:0000528 name: diffusivity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Diffusivity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000529 name: chemical uptake namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Chemical Uptake." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000530 name: chemical emission namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Chemical Emission." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000531 name: porosity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Porosity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000532 name: tortuosity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Tortuosity." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000533 name: heat content namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Heat Content." [] is_a: COMO:0000134 ! heat [Term] id: COMO:0000534 name: heat release namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Heat Release." [] is_a: COMO:0000134 ! heat [Term] id: COMO:0000535 name: heat flux namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Heat Flux." [] is_a: COMO:0000134 ! heat [Term] id: COMO:0000536 name: area namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Area." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000537 name: absence namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Absence." [] is_a: COMO:0000141 ! binary [Term] id: COMO:0000538 name: precipitation rate namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Precipitation Rate." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000539 name: dew point namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000005" xsd:string def: "Dew Point." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000540 name: inHg namespace: measure.ontology def: "inches of mercury." [] is_a: COMO:0000294 ! units not in UO is_a: UO:0000109 [Term] id: COMO:0000541 name: cumulative namespace: measure.ontology def: "Cumulative." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000542 name: michaelis constant namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Michaelis Constant." [] is_a: COMO:0000495 ! rate constant [Term] id: COMO:0000543 name: catalytic rate constant namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Catalytic Rate Constant." [] is_a: COMO:0000495 ! rate constant [Term] id: COMO:0000544 name: dissociation constant namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Dissociation Constant." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000545 name: inhibition constant namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Inhibition Constant." [] is_a: COMO:0000544 ! dissociation constant [Term] id: COMO:0000546 name: fluorescence namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0000314" xsd:string def: "Fluorescence." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000547 name: angle namespace: measure.ontology def: "Angle." [] is_a: COMO:0000018 ! mathematical context [Term] id: COMO:0000548 name: gapon selectivity coefficient namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Gapon Selectivity Coefficient." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000549 name: solubility coefficient namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Solubility Coefficient." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000550 name: viscosity namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Viscosity." [] is_a: COMO:0000026 ! chemical context [Term] id: COMO:0000551 name: plant cotyledon namespace: measure.ontology def: "Plant Cotyledon." [] is_a: COMO:0000501 ! plant organ [Term] id: COMO:0000552 name: chemical flux namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "Chemical Flux." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000553 name: vapor pressure namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units_parent "UO:0000109" xsd:string def: "Vapor Pressure." [] is_a: COMO:0000181 ! pressure [Term] id: COMO:0000554 name: albedo namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0010006" xsd:string def: "Albedo." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000555 name: LC-MS peak area ratio namespace: measure.ontology property_value: data_type "float" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean property_value: valid_units "UO:0010006" xsd:string def: "LC-MS Peak Area Ratio." [] is_a: COMO:0000120 ! measurement [Term] id: COMO:0000556 name: low control namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "low control." [] is_a: COMO:0000283 ! control [Term] id: COMO:0000557 name: high control namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "high control." [] is_a: COMO:0000283 ! control [Term] id: COMO:0000558 name: control name namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "control name." [] is_a: COMO:0000283 ! control [Term] id: COMO:0000559 name: microaerobic namespace: measure.ontology property_value: data_type "boolean" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "microaerobic." [] is_a: COMO:0000209 ! physical context [Term] id: COMO:0000560 name: colony formation on solid media namespace: measure.ontology def: "colony formation on solid media." [] is_a: COMO:0000416 ! growth stage [Term] id: COMO:0000561 name: single colony growth in liquid media namespace: measure.ontology def: "single colony growth in liquid media." [] synonym: "growth in liquid media" EXACT [] synonym: "single colony grown in liquid media" EXACT [] is_a: COMO:0000416 ! growth stage [Term] id: COMO:0000562 name: culture vessel namespace: measure.ontology property_value: data_type "string" xsd:string property_value: is_microtype "true" xsd:boolean property_value: is_valid_data_variable "true" xsd:boolean property_value: is_valid_dimension "true" xsd:boolean property_value: is_valid_dimension_variable "true" xsd:boolean property_value: is_valid_property "true" xsd:boolean def: "culture vessel." [] is_a: COMO:0000039 ! biological context [Term] id: COMO:0000563 name: Oxford Nanopore namespace: measure.ontology def: "Oxford Nanopore." [] is_a: COMO:0000116 ! sequencing technology [Typedef] id: data_type [Typedef] id: is_a