# include # include # include # include # include # include # include using namespace std; int main ( int argc, char *argv[] ); char ch_cap ( char ch ); bool ch_eqi ( char ch1, char ch2 ); int ch_to_digit ( char ch ); void gmsh_data_read ( string gmsh_filename, int node_dim, int node_num, double node_x[], int element_order, int element_num, int element_node[] ); void gmsh_size_read ( string gmsh_filename, int &node_num, int &node_dim, int &element_num, int &element_order ); void i4mat_write ( string output_filename, int m, int n, int table[] ); double r8_max ( double x, double y ); double r8_min ( double x, double y ); void r8mat_write ( string output_filename, int m, int n, double table[] ); bool s_begin ( string s1, string s2 ); int s_len_trim ( string s ); int s_to_i4 ( string s, int &last, bool &error ); double s_to_r8 ( string s, int &lchar, bool &error ); void timestamp ( ); //****************************************************************************80 int main ( int argc, char *argv[] ) //****************************************************************************80 // // Purpose: // // MAIN is the main program for GMSH_TO_FEM. // // Discussion: // // GMSH_TO_FEM converts mesh data from GMSH to FEM format. // // Usage: // // gmsh_to_fem prefix // // where 'prefix' is the common filename prefix: // // * 'prefix'.msh contains the GMSH mesh file. // * 'prefix'_nodes.txt will contain the node coordinates. // * 'prefix'_elements.txt will contain the element node connectivity. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 21 October 2014 // // Author: // // John Burkardt // { int *element_node; int element_num; int element_order; string fem_element_filename; string fem_node_filename; string gmsh_filename; int m; int node_num; double *node_x; string prefix; timestamp ( ); cout << "\n"; cout << "GMSH_TO_FEM\n"; cout << " C++ version:\n"; cout << " Read a mesh description created by GMSH:\n"; cout << " * \"prefix\".msh, the GMSH mesh file.\n"; cout << " Write out two simple FEM files listing nodes and elements.\n"; cout << " * \"prefix\"_nodes.txt, node coordinates.\n"; cout << " * \"prefix\"_elements.txt, element connectivity.\n"; // // Get the filename prefix. // if ( argc <= 1 ) { cout << "\n"; cout << " Please enter the filename prefix.\n"; cin >> prefix; } else { prefix = argv[1]; } // // Create the filenames. // gmsh_filename = prefix + ".msh"; fem_node_filename = prefix + "_nodes.txt"; fem_element_filename = prefix + "_elements.txt"; // // Read GMSH sizes. // gmsh_size_read ( gmsh_filename, node_num, m, element_num, element_order ); // // Report sizes. // cout << "\n"; cout << " Size information from GMSH:\n"; cout << " Spatial dimension M = " << m << "\n"; cout << " Number of nodes NODE_NUM = " << node_num << "\n"; cout << " Number of elements ELEMENT_NUM = " << element_num << "\n"; cout << " Element order ELEMENT_ORDER = " << element_order << "\n"; // // Allocate memory. // node_x = new double[m*node_num]; element_node = new int[element_order*element_num]; // // Read GMSH data. // gmsh_data_read ( gmsh_filename, m, node_num, node_x, element_order, element_num, element_node ); // // Write FEM data. // r8mat_write ( fem_node_filename, m, node_num, node_x ); i4mat_write ( fem_element_filename, element_order, element_num, element_node ); // // Free memory. // delete [] element_node; delete [] node_x; // // Terminate. // cout << "\n"; cout << "GMSH_TO_FEM:\n"; cout << " Normal end of execution.\n"; cout << "\n"; timestamp ( ); return 0; } //****************************************************************************80 char ch_cap ( char ch ) //****************************************************************************80 // // Purpose: // // CH_CAP capitalizes a single character. // // Discussion: // // This routine should be equivalent to the library "toupper" function. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 19 July 1998 // // Author: // // John Burkardt // // Parameters: // // Input, char CH, the character to capitalize. // // Output, char CH_CAP, the capitalized character. // { if ( 97 <= ch && ch <= 122 ) { ch = ch - 32; } return ch; } //****************************************************************************80 bool ch_eqi ( char ch1, char ch2 ) //****************************************************************************80 // // Purpose: // // CH_EQI is true if two characters are equal, disregarding case. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 13 June 2003 // // Author: // // John Burkardt // // Parameters: // // Input, char CH1, CH2, the characters to compare. // // Output, bool CH_EQI, is true if the two characters are equal, // disregarding case. // { if ( 97 <= ch1 && ch1 <= 122 ) { ch1 = ch1 - 32; } if ( 97 <= ch2 && ch2 <= 122 ) { ch2 = ch2 - 32; } return ( ch1 == ch2 ); } //****************************************************************************80 int ch_to_digit ( char ch ) //****************************************************************************80 // // Purpose: // // CH_TO_DIGIT returns the integer value of a base 10 digit. // // Example: // // CH DIGIT // --- ----- // '0' 0 // '1' 1 // ... ... // '9' 9 // ' ' 0 // 'X' -1 // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 13 June 2003 // // Author: // // John Burkardt // // Parameters: // // Input, char CH, the decimal digit, '0' through '9' or blank are legal. // // Output, int CH_TO_DIGIT, the corresponding integer value. If the // character was 'illegal', then DIGIT is -1. // { int digit; if ( '0' <= ch && ch <= '9' ) { digit = ch - '0'; } else if ( ch == ' ' ) { digit = 0; } else { digit = -1; } return digit; } //****************************************************************************80 void gmsh_data_read ( string gmsh_filename, int node_dim, int node_num, double node_x[], int element_order, int element_num, int element_node[] ) //****************************************************************************80 // // Purpose: // // GMSH_DATA_READ reads data from a GMSH file. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 21 October 2014 // // Author: // // John Burkardt // // Parameters: // // Input, character *GMSH_FILENAME, the GMSH filename. // // Input, int NODE_DIM, the spatial dimension. // // Input, int NODE_NUM, the number of nodes. // // Input, double NODE_X[NODE_DIM*NODE_NUM], the node coordinates. // // Input, int ELEMENT_ORDER, the order of the elements. // // Input, int ELEMENT_NUM, the number of elements. // // Input, int ELEMENT_NODE[ELEMENT_ORDER*ELEMENT_NUM], // the nodes that make up each element. // { int i; int i4_dummy; bool ierror; int indx; ifstream input; int j; int k; int length; int level; string text; double x; double y; double z; input.open ( gmsh_filename.c_str ( ) ); if ( ! input ) { cerr << "\n"; cerr << "GMSH_DATA_READ - Fatal error!\n"; cerr << " Could not open input file \"" << gmsh_filename << "\"\n"; exit ( 1 ); } level = 0; for ( ; ; ) { getline ( input, text ); if ( input.eof ( ) ) { break; } if ( level == 0 ) { if ( s_begin ( text, "$Nodes" ) ) { level = 1; } } else if ( level == 1 ) { i4_dummy = s_to_i4 ( text, length, ierror ); level = 2; j = 0; } else if ( level == 2 ) { if ( s_begin ( text, "$EndNodes" ) ) { break; } else { i4_dummy = s_to_i4 ( text, length, ierror ); text.erase ( 0, length ); for ( i = 0; i < node_dim; i++ ) { x = s_to_r8 ( text, length, ierror ); text.erase ( 0, length ); node_x[i+j*node_dim] = x; } j = j + 1; } } } // // Now read element information. // level = 0; for ( ; ; ) { getline ( input, text ); if ( input.eof ( ) ) { break; } if ( level == 0 ) { if ( s_begin ( text, "$Elements" ) ) { level = 1; } } else if ( level == 1 ) { i4_dummy = s_to_i4 ( text, length, ierror ); level = 2; j = 0; } else if ( level == 2 ) { if ( s_begin ( text, "$EndElements" ) ) { break; } else { for ( k = 1; k <= 5; k++ ) { i4_dummy = s_to_i4 ( text, length, ierror ); text.erase ( 0, length ); } for ( i = 0; i < element_order; i++ ) { k = s_to_i4 ( text, length, ierror ); text.erase ( 0, length ); element_node[i+j*element_order] = k; } j = j + 1; } } } input.close ( ); return; } //****************************************************************************80 void gmsh_size_read ( string gmsh_filename, int &node_num, int &node_dim, int &element_num, int &element_order ) //****************************************************************************80 // // Purpose: // // GMSH_SIZE_READ reads sizes from a GMSH file. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 21 October 2014 // // Author: // // John Burkardt // // Parameters: // // Input, string GMSH_FILENAME, the GMSH filename. // // Output, int &NODE_NUM, the number of nodes. // // Output, int &NODE_DIM, the spatial dimension. // // Output, int &ELEMENT_NUM, the number of elements. // // Output, int &ELEMENT_ORDER, the order of the elements. // { bool ierror; int indx; ifstream input; int k; int length; int level; const double r8_big = 1.0E+30; string text; double x; double x_max; double x_min; double y; double y_max; double y_min; double z; double z_max; double z_min; node_num = 0; node_dim = 0; x_max = - r8_big; x_min = + r8_big; y_max = - r8_big; y_min = + r8_big; z_max = - r8_big; z_min = + r8_big; input.open ( gmsh_filename.c_str ( ) ); if ( ! input ) { cerr << "\n"; cerr << "GMSH_SIZE_READ - Fatal error!\n"; cerr << " Could not open input file \"" << gmsh_filename << "\"\n"; exit ( 1 ); } level = 0; for ( ; ; ) { getline ( input, text ); if ( input.eof ( ) ) { break; } if ( level == 0 ) { if ( s_begin ( text, "$Nodes" ) ) { level = 1; } } else if ( level == 1 ) { node_num = s_to_i4 ( text, length, ierror ); level = 2; } else if ( level == 2 ) { if ( s_begin ( text, "$EndNodes" ) ) { break; } else { indx = s_to_i4 ( text, length, ierror ); text.erase ( 0, length ); x = s_to_r8 ( text, length, ierror ); x_min = r8_min ( x_min, x ); x_max = r8_max ( x_max, x ); text.erase ( 0, length ); y = s_to_r8 ( text, length, ierror ); y_min = r8_min ( y_min, y ); y_max = r8_max ( y_max, y ); text.erase ( 0, length ); z = s_to_r8 ( text, length, ierror); z_min = r8_min ( z_min, z ); z_max = r8_max ( z_max, z ); text.erase ( 0, length ); } } } // // Make a very simple guess as to the dimensionality of the data. // node_dim = 3; if ( z_max == z_min ) { node_dim = 2; if ( y_max == y_min ) { node_dim = 1; } } // // Now read element information. // level = 0; for ( ; ; ) { getline ( input, text ); if ( input.eof ( ) ) { break; } if ( level == 0 ) { if ( s_begin ( text, "$Elements" ) ) { level = 1; } } else if ( level == 1 ) { element_num = s_to_i4 ( text, length, ierror ); level = 2; } else if ( level == 2 ) { if ( s_begin ( text, "$EndElements" ) ) { break; } else { k = 0; for ( ; ; ) { indx = s_to_i4 ( text, length, ierror ); text.erase ( 0, length ); if ( ierror != 0 ) { break; } k = k + 1; } element_order = k - 5; break; } } } input.close ( ); return; } //****************************************************************************80 void i4mat_write ( string output_filename, int m, int n, int table[] ) //****************************************************************************80 // // Purpose: // // I4MAT_WRITE writes an I4MAT file with no header. // // Discussion: // // An I4MAT is an array of I4's. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 01 June 2009 // // Author: // // John Burkardt // // Parameters: // // Input, string OUTPUT_FILENAME, the output filename. // // Input, int M, the spatial dimension. // // Input, int N, the number of points. // // Input, int TABLE[M*N], the data. // { int i; int j; ofstream output; // // Open the file. // output.open ( output_filename.c_str ( ) ); if ( !output ) { cerr << "\n"; cerr << "I4MAT_WRITE - Fatal error!\n"; cerr << " Could not open the output file.\n"; exit ( 1 ); } // // Write the data. // for ( j = 0; j < n; j++ ) { for ( i = 0; i < m; i++ ) { output << " " << table[i+j*m]; } output << "\n"; } // // Close the file. // output.close ( ); return; } //****************************************************************************80 double r8_max ( double x, double y ) //****************************************************************************80 // // Purpose: // // R8_MAX returns the maximum of two R8's. // // Discussion: // // The C++ math library provides the function fmax() which is preferred. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 18 August 2004 // // Author: // // John Burkardt // // Parameters: // // Input, double X, Y, the quantities to compare. // // Output, double R8_MAX, the maximum of X and Y. // { double value; if ( y < x ) { value = x; } else { value = y; } return value; } //****************************************************************************80 double r8_min ( double x, double y ) //****************************************************************************80 // // Purpose: // // R8_MIN returns the minimum of two R8's. // // Discussion: // // The C++ math library provides the function fmin() which is preferred. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 31 August 2004 // // Author: // // John Burkardt // // Parameters: // // Input, double X, Y, the quantities to compare. // // Output, double R8_MIN, the minimum of X and Y. // { double value; if ( y < x ) { value = y; } else { value = x; } return value; } //****************************************************************************80 void r8mat_write ( string output_filename, int m, int n, double table[] ) //****************************************************************************80 // // Purpose: // // R8MAT_WRITE writes an R8MAT file. // // Discussion: // // An R8MAT is an array of R8's. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 29 June 2009 // // Author: // // John Burkardt // // Parameters: // // Input, string OUTPUT_FILENAME, the output filename. // // Input, int M, the spatial dimension. // // Input, int N, the number of points. // // Input, double TABLE[M*N], the data. // { int i; int j; ofstream output; // // Open the file. // output.open ( output_filename.c_str ( ) ); if ( !output ) { cerr << "\n"; cerr << "R8MAT_WRITE - Fatal error!\n"; cerr << " Could not open the output file.\n"; exit ( 1 ); } // // Write the data. // for ( j = 0; j < n; j++ ) { for ( i = 0; i < m; i++ ) { output << " " << table[i+j*m]; } output << "\n"; } // // Close the file. // output.close ( ); return; } //****************************************************************************80 bool s_begin ( string s1, string s2 ) //****************************************************************************80 // // Purpose: // // S_BEGIN reports whether string 1 begins with string 2, ignoring case. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 25 October 2010 // // Author: // // John Burkardt // // Parameters: // // Input, string S1, string S2, two strings. // // Output, bool S_BEGIN, is true if S1 is the same as S2 up to // the end of S2, and false otherwise. // { int i; int n1; int n2; n1 = s1.length ( ); n2 = s2.length ( ); if ( n1 < n2 ) { return false; } for ( i = 0; i < n2; i++ ) { if ( ch_cap ( s1[i] ) != ch_cap ( s2[i] ) ) { return false; } } return true; } //****************************************************************************80 int s_len_trim ( string s ) //****************************************************************************80 // // Purpose: // // S_LEN_TRIM returns the length of a string to the last nonblank. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 05 July 2009 // // Author: // // John Burkardt // // Parameters: // // Input, string S, a string. // // Output, int S_LEN_TRIM, the length of the string to the last nonblank. // If S_LEN_TRIM is 0, then the string is entirely blank. // { int n; n = s.length ( ); while ( 0 < n ) { if ( s[n-1] != ' ' && s[n-1] != '\n' ) { return n; } n = n - 1; } return n; } //****************************************************************************80 int s_to_i4 ( string s, int &last, bool &error ) //****************************************************************************80 // // Purpose: // // S_TO_I4 reads an I4 from a string. // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 05 July 2009 // // Author: // // John Burkardt // // Parameters: // // Input, string S, a string to be examined. // // Output, int &LAST, the last character of S used to make IVAL. // // Output, bool &ERROR is TRUE if an error occurred. // // Output, int *S_TO_I4, the integer value read from the string. // If the string is blank, then IVAL will be returned 0. // { char c; int i; int isgn; int istate; int ival; error = false; istate = 0; isgn = 1; i = 0; ival = 0; for ( ; ; ) { c = s[i]; i = i + 1; // // Haven't read anything. // if ( istate == 0 ) { if ( c == ' ' ) { } else if ( c == '-' ) { istate = 1; isgn = -1; } else if ( c == '+' ) { istate = 1; isgn = + 1; } else if ( '0' <= c && c <= '9' ) { istate = 2; ival = c - '0'; } else { error = true; return ival; } } // // Have read the sign, expecting digits. // else if ( istate == 1 ) { if ( c == ' ' ) { } else if ( '0' <= c && c <= '9' ) { istate = 2; ival = c - '0'; } else { error = true; return ival; } } // // Have read at least one digit, expecting more. // else if ( istate == 2 ) { if ( '0' <= c && c <= '9' ) { ival = 10 * ival + c - '0'; } else { ival = isgn * ival; last = i - 1; return ival; } } } // // If we read all the characters in the string, see if we're OK. // if ( istate == 2 ) { ival = isgn * ival; last = s_len_trim ( s ); } else { error = true; last = 0; } return ival; } //****************************************************************************80 double s_to_r8 ( string s, int &lchar, bool &error ) //****************************************************************************80 // // Purpose: // // S_TO_R8 reads an R8 from a string. // // Discussion: // // This routine will read as many characters as possible until it reaches // the end of the string, or encounters a character which cannot be // part of the real number. // // Legal input is: // // 1 blanks, // 2 '+' or '-' sign, // 2.5 spaces // 3 integer part, // 4 decimal point, // 5 fraction part, // 6 'E' or 'e' or 'D' or 'd', exponent marker, // 7 exponent sign, // 8 exponent integer part, // 9 exponent decimal point, // 10 exponent fraction part, // 11 blanks, // 12 final comma or semicolon. // // with most quantities optional. // // Example: // // S R // // '1' 1.0 // ' 1 ' 1.0 // '1A' 1.0 // '12,34,56' 12.0 // ' 34 7' 34.0 // '-1E2ABCD' -100.0 // '-1X2ABCD' -1.0 // ' 2E-1' 0.2 // '23.45' 23.45 // '-4.2E+2' -420.0 // '17d2' 1700.0 // '-14e-2' -0.14 // 'e2' 100.0 // '-12.73e-9.23' -12.73 * 10.0^(-9.23) // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 05 July 2009 // // Author: // // John Burkardt // // Parameters: // // Input, string S, the string containing the // data to be read. Reading will begin at position 1 and // terminate at the end of the string, or when no more // characters can be read to form a legal real. Blanks, // commas, or other nonnumeric data will, in particular, // cause the conversion to halt. // // Output, int &LCHAR, the number of characters read from // the string to form the number, including any terminating // characters such as a trailing comma or blanks. // // Output, bool &ERROR, is true if an error occurred. // // Output, double S_TO_R8, the real value that was read from the string. // { char c; int ihave; int isgn; int iterm; int jbot; int jsgn; int jtop; int nchar; int ndig; double r; double rbot; double rexp; double rtop; char TAB = 9; nchar = s_len_trim ( s ); error = false; r = 0.0; lchar = -1; isgn = 1; rtop = 0.0; rbot = 1.0; jsgn = 1; jtop = 0; jbot = 1; ihave = 1; iterm = 0; for ( ; ; ) { c = s[lchar+1]; lchar = lchar + 1; // // Blank or TAB character. // if ( c == ' ' || c == TAB ) { if ( ihave == 2 ) { } else if ( ihave == 6 || ihave == 7 ) { iterm = 1; } else if ( 1 < ihave ) { ihave = 11; } } // // Comma. // else if ( c == ',' || c == ';' ) { if ( ihave != 1 ) { iterm = 1; ihave = 12; lchar = lchar + 1; } } // // Minus sign. // else if ( c == '-' ) { if ( ihave == 1 ) { ihave = 2; isgn = -1; } else if ( ihave == 6 ) { ihave = 7; jsgn = -1; } else { iterm = 1; } } // // Plus sign. // else if ( c == '+' ) { if ( ihave == 1 ) { ihave = 2; } else if ( ihave == 6 ) { ihave = 7; } else { iterm = 1; } } // // Decimal point. // else if ( c == '.' ) { if ( ihave < 4 ) { ihave = 4; } else if ( 6 <= ihave && ihave <= 8 ) { ihave = 9; } else { iterm = 1; } } // // Exponent marker. // else if ( ch_eqi ( c, 'E' ) || ch_eqi ( c, 'D' ) ) { if ( ihave < 6 ) { ihave = 6; } else { iterm = 1; } } // // Digit. // else if ( ihave < 11 && '0' <= c && c <= '9' ) { if ( ihave <= 2 ) { ihave = 3; } else if ( ihave == 4 ) { ihave = 5; } else if ( ihave == 6 || ihave == 7 ) { ihave = 8; } else if ( ihave == 9 ) { ihave = 10; } ndig = ch_to_digit ( c ); if ( ihave == 3 ) { rtop = 10.0 * rtop + ( double ) ndig; } else if ( ihave == 5 ) { rtop = 10.0 * rtop + ( double ) ndig; rbot = 10.0 * rbot; } else if ( ihave == 8 ) { jtop = 10 * jtop + ndig; } else if ( ihave == 10 ) { jtop = 10 * jtop + ndig; jbot = 10 * jbot; } } // // Anything else is regarded as a terminator. // else { iterm = 1; } // // If we haven't seen a terminator, and we haven't examined the // entire string, go get the next character. // if ( iterm == 1 || nchar <= lchar + 1 ) { break; } } // // If we haven't seen a terminator, and we have examined the // entire string, then we're done, and LCHAR is equal to NCHAR. // if ( iterm != 1 && lchar + 1 == nchar ) { lchar = nchar; } // // Number seems to have terminated. Have we got a legal number? // Not if we terminated in states 1, 2, 6 or 7! // if ( ihave == 1 || ihave == 2 || ihave == 6 || ihave == 7 ) { error = true; return r; } // // Number seems OK. Form it. // if ( jtop == 0 ) { rexp = 1.0; } else { if ( jbot == 1 ) { rexp = pow ( 10.0, jsgn * jtop ); } else { rexp = jsgn * jtop; rexp = rexp / jbot; rexp = pow ( 10.0, rexp ); } } r = isgn * rexp * rtop / rbot; return r; } //********************************************************************** void timestamp ( ) //********************************************************************** // // Purpose: // // TIMESTAMP prints the current YMDHMS date as a time stamp. // // Example: // // May 31 2001 09:45:54 AM // // Licensing: // // This code is distributed under the GNU LGPL license. // // Modified: // // 24 September 2003 // // Author: // // John Burkardt // // Parameters: // // None // { # define TIME_SIZE 40 static char time_buffer[TIME_SIZE]; const struct tm *tm; size_t len; time_t now; now = time ( NULL ); tm = localtime ( &now ); len = strftime ( time_buffer, TIME_SIZE, "%d %B %Y %I:%M:%S %p", tm ); cout << time_buffer << "\n"; return; # undef TIME_SIZE }