{ "cells": [ { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "scrolled": true }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ " gene gene_id sitenum num_sites pas \\\n", "0 AADACL3 AADACL3.2 2 2 0 \n", "1 ABCA4 ABCA4.1 5 5 0 \n", "2 ABCB10 ABCB10.6 2 7 0 \n", "3 ABCB10 ABCB10.5 3 7 0 \n", "4 ABCB10 ABCB10.4 4 7 2 \n", "5 ABCB10 ABCB10.3 5 7 0 \n", "6 ABCB10 ABCB10.2 6 7 0 \n", "7 ABCB10 ABCB10.1 7 7 0 \n", "8 ABCD3 ABCD3.6 6 15 3 \n", "9 ABCD3 ABCD3.7 7 15 0 \n", "10 ABCD3 ABCD3.8 8 15 2 \n", "11 ABCD3 ABCD3.9 9 15 4 \n", "12 ABCD3 ABCD3.10 10 15 4 \n", "13 ABCD3 ABCD3.11 11 15 2 \n", "14 ABCD3 ABCD3.12 12 15 3 \n", "15 ABCD3 ABCD3.13 13 15 0 \n", "16 ABCD3 ABCD3.14 14 15 0 \n", "17 ABCD3 ABCD3.15 15 15 0 \n", "18 ABL2 ABL2.18 7 24 4 \n", "19 ABL2 ABL2.17 8 24 3 \n", "20 ABL2 ABL2.16 9 24 2 \n", "21 ABL2 ABL2.15 10 24 0 \n", "22 ABL2 ABL2.14 11 24 0 \n", "23 ABL2 ABL2.13 12 24 0 \n", "24 ABL2 ABL2.12 13 24 2 \n", "25 ABL2 ABL2.11 14 24 3 \n", "26 ABL2 ABL2.10 15 24 0 \n", "27 ABL2 ABL2.9 16 24 4 \n", "28 ABL2 ABL2.8 17 24 0 \n", "29 ABL2 ABL2.7 18 24 4 \n", "... ... ... ... ... ... \n", "114575 UTY UTY.5 8 12 3 \n", "114576 UTY UTY.4 9 12 0 \n", "114577 UTY UTY.3 10 12 3 \n", "114578 UTY UTY.2 11 12 0 \n", "114579 UTY UTY.1 12 12 0 \n", "114580 ZFY ZFY.3 3 7 0 \n", "114581 ZFY ZFY.4 4 7 0 \n", "114582 ZFY ZFY.5 5 7 0 \n", "114583 ZFY ZFY.6 6 7 0 \n", "114584 ZFY ZFY.7 7 7 0 \n", "114585 na na.38381 3 38383 0 \n", "114586 na na.38379 5 38383 0 \n", "114587 na na.38377 7 38383 0 \n", "114588 na na.38376 8 38383 0 \n", "114589 na na.38375 9 38383 0 \n", "114590 na na.38373 11 38383 0 \n", "114591 na na.38372 12 38383 4 \n", "114592 na na.38371 13 38383 3 \n", "114593 na na.38360 24 38383 0 \n", "114594 na na.38359 25 38383 3 \n", "114595 na na.38351 33 38383 -1 \n", "114596 na na.38350 34 38383 2 \n", "114597 na na.38349 35 38383 0 \n", "114598 na na.38344 40 38383 2 \n", "114599 na na.38343 41 38383 0 \n", "114600 na na.38342 42 38383 3 \n", "114601 na na.38341 43 38383 2 \n", "114602 na na.38329 38329 38383 0 \n", "114603 na na.38330 38330 38383 0 \n", "114604 na na.38331 38331 38383 0 \n", "\n", " seq \\\n", "0 GCTGCAGGTGGTGGTTGCTGAAGGTGGGGGAGGCTGTGGCAATTTC... \n", "1 TTTCTGCATGTTTGTCTGTGTGTCTGCGTTGTGTGTGATTTTCATG... \n", "2 GTTAAAGATTGAAGCTATTGTCAAATGACAACTTTAAAAAGGCAAT... \n", "3 CTATTTCATGAAAAGCATGGAATATTATATTTTATTGTTCATAATT... \n", "4 CATAATTAATGAATAAAATTGATATGAATGAATATAGTGTTCTTTG... \n", "5 TCTGATACATGATGTTCAATTTTATCTTTAGGTAATATTTTATATC... \n", "6 AACTTCTCACTACATTGTTTCTTAGTAGAATTTGGCTGTGGAGATT... \n", "7 TCAGGAATAAAGAAAAGACTAACATTACACATATCCAAAAACATGT... \n", "8 CATTTAATATTATATAGGATATTGCTAATTGTGTATATGTTGGTTT... \n", "9 ATAATATGTACTAAGAATGTCCTTATTCTTGTGGTTAAAAACCTGC... \n", "10 GGAGTGCATTTGACTCCAGGAAAAGCCATTTTGGTTTTCCTTAACT... \n", "11 GATTTTATGTTTAAAAAGTATGTTCTAAAATTATTATATATACATG... \n", "12 ATGATGTCAAACGATCCTAAGCGAAGATGATTTCAGTTCATCAAAT... \n", "13 ACTGGTTTTGTTTTTTTGCAGAATTAACTATAACAATCACTGGCTA... \n", "14 AACTATAACAATCACTGGCTACCGAAGTAAACTGATGTACTGAATT... \n", "15 AATTTTTACCACTTCTGTTTAGCGAACTTGTATACTTATTTTCTGT... \n", "16 GCCTTGACTTGAAAACATAGATAGTTTAATCTTGACTTGAAAAACA... \n", "17 ATGAGAAAATAAGTATGAAACAGCAATGGTAGTTTGTTTTGCATTA... \n", "18 AGGAAATCAGTGATGTGGTGCAGAGGTAGCCACTGTTAGCCTGGTG... \n", "19 CTGAGGGGAGAGGGAAAAGGACTTGTTTTCCTGTGTTCTTGTTTTC... \n", "20 CCACAAGGCCATTGCTGCTGTAATAAGAACTGCAAATCAGAGTGCT... \n", "21 AAGTTTCTTAGGATTCAACTGAAAATTGGCTAGTAAAATATGTCCC... \n", "22 ACAGGGTTATCTATATTTTTGTTCTTGATTTTTGAGTTTCATCATC... \n", "23 GACTTAAATTTTCACATATATGTATACTTAATTTTCAGCAATTATG... \n", "24 CTGATTCTCTAATGACTGTCACTGGACAAACCCCAGTTTTATGCTC... \n", "25 GTGTGTCACATTACCAGTGTTGTCAGGTATTTGTTCTTAATTGTTA... \n", "26 CTCCGTCTGTTGTCTGACTGTGAACTGCTAACAGTGTTAAACTTGA... \n", "27 GTCTGTTGTCTGACTGTGAACTGCTAACAGTGTTAAACTTGATGTA... \n", "28 ACTGCTTTCTCTGTCTTCTCACAAGGTTTGCCAAGTTGTGTTCTGT... \n", "29 GTCTAAGCAGCATTTCTTTCTCTCTCTGTAATGCAGATGTCTATAA... \n", "... ... \n", "114575 ACTTGTATTTCATATGAAAAATTTGCTAATTTAATATTAACTCATT... \n", "114576 ATATATGGGGGTACATGTGATATGTTGTTACATATATAGAATGTGT... \n", "114577 TTTATTTTTGTATAATACCGATTTCCACTTTGGTTTGACTTTGCTC... \n", "114578 AGACCTGCATCCAGAGAGGAGCTTCCTGATCCAGGGCTATTCTGTC... \n", "114579 ACAACTCTCTTCACTTTTTTCAGCTTATTTTCTCTTTCATGTTCAG... \n", "114580 TTCAGTTTCTTTAATAGATGAGGAAAAATAGCAACAAGCAAGTTGC... \n", "114581 CATATAGGAAGTGTGATACTATTGTAAATGTGTATTTGAGAATATG... \n", "114582 GTAAATGTGTATTTGAGAATATGCAAAAATAAAAATAATATTTTAC... \n", "114583 ATACCAATACTAAGTTAACTCTTTCTTTAAAACACGCAGTTTTAAG... \n", "114584 TTTGTTTTATCTTAATGAAAGATGGTTTGGTTAGCATCTGCACTTG... \n", "114585 GGCACTGAGCCGCTGGAGTCTGCACATTGATAAATTTACTTACAGT... \n", "114586 GCCCAGCCCTCACCTTGATCTCAGATTCCTTGTTTCCAGTACTGGA... \n", "114587 TGAATCTGCCGCATCTTGATACTGGACTTCCAGTCTCCAGAACTGT... \n", "114588 TTTTGCTATAGCAACCCAAATGGACTAAGAAAACACCAGAGGCCAT... \n", "114589 GGAATTGCTATGTAGTAATTATTCAAATTGCATGCACAGCTAAGAA... \n", "114590 TTTGTTCCTTAATCTGTTAGTATGGTATATTACATCGATTAATATT... \n", "114591 TATTAAATCAGTCATGAATTCCCATTATGAGCCCCACTTGCTCATG... \n", "114592 CATTTCCTCCAGAGGCCAACAAAACTCTCCCTACTCTCTAAGCCCC... \n", "114593 ACCACTGCCACAGCTGCCTACAACAGACACATCAGATGACACTCCG... \n", "114594 GATGACACTCCGGGCAAATAAATGATTTTCACTGAGGACTTACTGG... \n", "114595 ACAGAGGGGTGCAGGACTCGGGCCCTGGCACACAAGGAGGTAGCTG... \n", "114596 TCCTCTGTCCCACTTAACCCGAGGGACCCCAGAAGCAAGTGTCACC... \n", "114597 CTGGCTGGCTACCAGTGAGCAGCGGCACGGTGCTTCCCCCCAATCC... \n", "114598 GAAGTGACTTCTACCTTACTGCTTTAAAAAATGTATCTGTCTTTTG... \n", "114599 ACAAGTGAAGATTACAGTTTTTCATCAAATTTGTGAAGTTTTCAGC... \n", "114600 TTTGTGCCTGTCTCATTTTTTGTTGTTGTTGAAAACTGAACATTTA... \n", "114601 ATCAGATTCTTCATTTTCCTAATGTGTGTTATGATTGGTTACTGTT... \n", "114602 GTCCATTCTTGTATTGCTATAAAGAAATATTGGATACTGGCTAATT... \n", "114603 TCAGTTCATCAACGAATCGGTATATTAATGTCATATTTAACAGTTA... \n", "114604 CGGTATATTAATGTCATATTTAACAGTTATAGGAATAAACTAAGCA... \n", "\n", " seq_ext \\\n", "0 TAAATTGTCGTAATCTTTTTGCTGGTTGATGGTCTTGCCTTGATGT... \n", "1 CCACTAGCAGCTTTGGCCTCCATATTGCTCTCATTTCAAGCAGATC... \n", "2 TGGAATATTTTAATTAATATAGCATGGCACCTCATTTTCTTTTGCC... \n", "3 CATGAACTAAGCATTTATTAGTTCCCTGATTAGACTGGAAGAAGAA... \n", "4 AGAAGAAACCACTATTTCATGAAAAGCATGGAATATTATATTTTAT... \n", "5 TGTGCCATAGAAGTATTTACGAAATTGCATTTCATTGTTATGTTTT... \n", "6 TTTTTTTTTATGACCCAGGAACCAAAGATGCAGTCTGTCATTTCTT... \n", "7 TATAAAACTTCTCACTACATTGTTTCTTAGTAGAATTTGGCTGTGG... \n", "8 AAAGCAACAAATTAACTAGATACAGAATAATGGAGAACAAGTTGTT... \n", "9 ATTTAATATTATATAGGATATTGCTAATTGTGTATATGTTGGTTTA... \n", "10 GGCAGATTTCTTTAGCTGCCACAGTAATACTCATTCCTTGTGTGTG... \n", "11 TACATGAAATAATGCACTGAGTATGCAATGCTATCACTGTCTTTGA... \n", "12 GGCACTGTTTTATCTCTGTGAATCTTGAATAACTTTTTTATATTTG... \n", "13 TCTCAAACTGAGCTTCAGAAAGGGGCATTTTGTACTCTTGTTTTTG... \n", "14 CATTTTGTACTCTTGTTTTTGCATAACTGGTTTTGTTTTTTTGCAG... \n", "15 CTGGCTACCGAAGTAAACTGATGTACTGAATTCCATAATACATAAC... \n", "16 TGTTCTTTTTATTCTGGTATCTAAATACTGAGAAGTTCATTTATAA... \n", "17 TGCCAAGACATATCACCGTGTTCTCATAATAAGTTTTTACTTTTTA... \n", "18 TGGTGTGCCCGGGACAAACCCTGTCCTTAATAACTTATTGTCATGT... \n", "19 TGTGGTGCAGAGGTAGCCACTGTTAGCCTGGTGGGAAAATGCACAC... \n", "20 CAAGAGAAATTTTTGTTCAGGGCTGTTGGAAGTAGCTGTTAGCCTT... \n", "21 TATAGTGGAGACCCTTTACCAGCAGCATTTTAAGATTTAAATTAGA... \n", "22 GTCATTCTTGTTATCAGGCTGTGCCCCTACCAGGAGTTCATATTGG... \n", "23 GCTTAAATTTGCTTCGGAATTAGGCACCATAAACTTTAGTTGGAGA... \n", "24 CTCAGAACCTCCATCTCCTCCCAGACCCTGCACTTTTCCTTCTCTG... \n", "25 TAAGGGGACATAGTGAGACAATGTGGGATTTAACTAAAAACACATC... \n", "26 TCTTAATTGTTATTGTAATATATTTTCAGTTGTTTTTCTAATTTAA... \n", "27 AATTGTTATTGTAATATATTTTCAGTTGTTTTTCTAATTTAATTCT... \n", "28 ACTGCTAACAGTGTTAAACTTGATGTAAATAAATGAGGCCCTTGAA... \n", "29 AAGTAGGCTGGAGATTGGAGTGTTTCTCCCATGATTTTAGTTGACA... \n", "... ... \n", "114575 AAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTAT... \n", "114576 ATCTTATACCTACAGATTATTTTATTTTTTAAGTTGATAATATTTC... \n", "114577 TCAATGTATTTAGAACTGTTTAATTCCCAAGTGGTGGGGAGTGGGG... \n", "114578 CTACCCACTCCAGGGCCTCATCTCTGCTGAGAGCTGCAGAGATGAC... \n", "114579 GTTTCTGGCCAGAAAAGCAACACCATAAGGTTCCTGAAACAACAGG... \n", "114580 TCTAGTCCACTTTTCTTTACATTTTATTCAATACGCTGTCCTGAAT... \n", "114581 TCCCTTCCTCTGTACAAATTGTAAAATACTTAAAATAACTATGAAG... \n", "114582 AAATACTTAAAATAACTATGAAGAATTCATATAGGAAGTGTGATAC... \n", "114583 GCAAAAATAAAAATAATATTTTACTGTTAATAAATGTTTACTTGTA... \n", "114584 TTGCGCTAGTTGATGAGGCCTTTGCTTAATGTGTTCTTGAAAGTCA... \n", "114585 AACTCAAGCAACTTTCTCCAAAGCCTAGGGTTCAGCAAGAGTAAGC... \n", "114586 GCTGGAAGAGGCGGGAAAGATCCTCCCCTAGAGCTTCCAGGGGGAG... \n", "114587 CAGAGGGAAGGCTCTGTCTATGAATGAGAAAGTGGGTCCCCACCAG... \n", "114588 CTGTGGGCAATAAATGTCTGTTGTTTATTACCTGTCCAGTATCTTT... \n", "114589 AAGTTCCTGGCTGCCTCCCCTGAGGGTTCTGATGTATTGGCTATGT... \n", "114590 AAAAGCCTAGTTGTTGTCTCCTGCAAGATGTATTCAGTTGTAATTT... \n", "114591 CTTTGTTCCTTAATCTGTTAGTATGGTATATTACATCGATTAATAT... \n", "114592 GGAGGGAGAAAGAGAGCATGTGCTTAAAGAAAAGTTATGGGGCTGG... \n", "114593 CCACTGATGGACGGACAGACGTGGGCAGGGTACGTGTCACTAAACC... \n", "114594 TGTCACTAAACCTCCCACCACTGCCACAGCTGCCTACAACAGACAC... \n", "114595 TCTGCGAAGTGATGGAGACACTGACAGTGCAGGAAGAGGCAAACCC... \n", "114596 CCACCACTCTGCCCCCTCTCATCACCTGGTCTGGGCCCTCAACACC... \n", "114597 ACCGCCAGAATTGCATGGCCCATCATACTTGCTACCCCACCATCCT... \n", "114598 GAAAGGAGAAAAGGGAGGGAGGGAGGGAAGGAGGGAGGACTTGTAT... \n", "114599 AAAATGTCTTGTGTCTAAACATGGATCCCTTGTAATTCACGCAACT... \n", "114600 TTCTGTTGGCTGTGCTTTTTCTTGCGTATAGGCTGTACTTTTTTTT... \n", "114601 TGTTGTTGAAAACTGAACATTTAAAATAATATAATTTGGCAACTGT... \n", "114602 AACATTATATAGGATGTCTTGTTTTAGGCATTTATTGCTAGATAAC... \n", "114603 TGTTTGTAAAGTAGTTGTCTAGACTCTAGTGAAAATAATTACAGAT... \n", "114604 TCTAGACTCTAGTGAAAATAATTACAGATAATCTCAGTTCATCAAC... \n", "\n", " wide_seq \\\n", "0 TGTATGTTACATTCATGGGAATGTCTAAATTGTCGTAATCTTTTTG... \n", "1 CCAGAACTAGAAACCCCGGGCCATCCCACTAGCAGCTTTGGCCTCC... \n", "2 TCAGGTTTTGTATTTTCTTTTCTTGTGGAATATTTTAATTAATATA... \n", "3 AATGTAAATCAAATGGAAGTTTTCCCATGAACTAAGCATTTATTAG... \n", "4 TTATTAGTTCCCTGATTAGACTGGAAGAAGAAACCACTATTTCATG... \n", "5 GGTTGAATCTGAGGAAAATAATCCTTGTGCCATAGAAGTATTTACG... \n", "6 AACTTTATCTGTGTCTGTCACTTTTTTTTTTTTTATGACCCAGGAA... \n", "7 ACCAAAGATGCAGTCTGTCATTTCTTATAAAACTTCTCACTACATT... \n", "8 CTTAGTTTTTTTTAAAAAAAAAAACAAAGCAACAAATTAACTAGAT... \n", "9 ATAATGGAGAACAAGTTGTTAAAACATTTAATATTATATAGGATAT... \n", "10 TGCATAACAGCGTTTATTATACAGTGGCAGATTTCTTTAGCTGCCA... \n", "11 CTCCAAATGAGCCATAGGAAGGCACTACATGAAATAATGCACTGAG... \n", "12 ATACATGGGTGAATTATGTTTCCGAGGCACTGTTTTATCTCTGTGA... \n", "13 CAATAAGCTAGATACGAAATCAGTTTCTCAAACTGAGCTTCAGAAA... \n", "14 TCTCAAACTGAGCTTCAGAAAGGGGCATTTTGTACTCTTGTTTTTG... \n", "15 TTTGCAGAATTAACTATAACAATCACTGGCTACCGAAGTAAACTGA... \n", "16 TCAGATATCCTATACAACCTTTGCTTGTTCTTTTTATTCTGGTATC... \n", "17 TTTCATCCATGAGCACCACGCTGCATGCCAAGACATATCACCGTGT... \n", "18 AGCTACAGGTTTCTTCAGCAGCTGCTGGTGTGCCCGGGACAAACCC... \n", "19 TGTCATGTGTACAGGAAATCAGTGATGTGGTGCAGAGGTAGCCACT... \n", "20 GCAGAAAAGAAAGCTGGGAATGTACCAAGAGAAATTTTTGTTCAGG... \n", "21 GATGACCTCTGTACATAGAGGTCATTATAGTGGAGACCCTTTACCA... \n", "22 TGCTCCCTTCCATTTTGCTACTGATGTCATTCTTGTTATCAGGCTG... \n", "23 TAAGGAGTTTGTGTAGTCAGAACTTGCTTAAATTTGCTTCGGAATT... \n", "24 AGGCTGACTTAGCTGTTGATGTATACTCAGAACCTCCATCTCCTCC... \n", "25 GAGCATCGGGCACTGTGTGCATTGCTAAGGGGACATAGTGAGACAA... \n", "26 ATTACCAGTGTTGTCAGGTATTTGTTCTTAATTGTTATTGTAATAT... \n", "27 CCAGTGTTGTCAGGTATTTGTTCTTAATTGTTATTGTAATATATTT... \n", "28 CTCTCCGTCTGTTGTCTGACTGTGAACTGCTAACAGTGTTAAACTT... \n", "29 TAAAGGTTGCAATATTTTATTGGCAAAGTAGGCTGGAGATTGGAGT... \n", "... ... \n", "114575 ACATGGTTTGGGGTGAAGGGGAGGAAAGTATTAAAAAATCTATATC... \n", "114576 TGATCAGTATGCAGATCCTTTACAGATCTTATACCTACAGATTATT... \n", "114577 ATTTCCTTTAGGATTTTCTCTTAGATCAATGTATTTAGAACTGTTT... \n", "114578 TCAGGTGACCAGCTGCAGAAAGGAGCTACCCACTCCAGGGCCTCAT... \n", "114579 GGCAAAAGCACCACCACCCACAGAGGTTTCTGGCCAGAAAAGCAAC... \n", "114580 GCTGTGTAAAAATAGAATTATTGCTTCTAGTCCACTTTTCTTTACA... \n", "114581 AAAATAGCCTATTAGATATTGTATGTCCCTTCCTCTGTACAAATTG... \n", "114582 TGTCCCTTCCTCTGTACAAATTGTAAAATACTTAAAATAACTATGA... \n", "114583 ATTGTAAATGTGTATTTGAGAATATGCAAAAATAAAAATAATATTT... \n", "114584 ATTTACAAGTAGTATTTCAGAGTACTTGCGCTAGTTGATGAGGCCT... \n", "114585 TAAAAATTATGGAACGAATTGTAGAAACTCAAGCAACTTTCTCCAA... \n", "114586 GCAATCATGACTGGAGCCACCAAGAGCTGGAAGAGGCGGGAAAGAT... \n", "114587 TTGCTCCTTCCACAGTGTGAGGACACAGAGGGAAGGCTCTGTCTAT... \n", "114588 GATACTGGACTTCCAGTCTCCAGAACTGTGGGCAATAAATGTCTGT... \n", "114589 AAGATGTGGGGGATATTTTGCAAGAAAGTTCCTGGCTGCCTCCCCT... \n", "114590 GACCATCTATCTGGACGAATAGGAGAAAAGCCTAGTTGTTGTCTCC... \n", "114591 AAGATGTATTCAGTTGTAATTTCGCCTTTGTTCCTTAATCTGTTAG... \n", "114592 GAAAGAGAGGGAAGGAAGGAAAGAGGGAGGGAGAAAGAGAGCATGT... \n", "114593 CAGGTGCAGCCAGAGAGACACTAGCCCACTGATGGACGGACAGACG... \n", "114594 GACGGACAGACGTGGGCAGGGTACGTGTCACTAAACCTCCCACCAC... \n", "114595 AAACCCTCTGCCAGCAACAAGGGTGTCTGCGAAGTGATGGAGACAC... \n", "114596 CCCCAAAGATGGCTCCGGCGCCTGCCCACCACTCTGCCCCCTCTCA... \n", "114597 GCCATGACCAACAGTCTCTTCCTCGACCGCCAGAATTGCATGGCCC... \n", "114598 GATGGATGGAAGAGAAGGAAAGGAAGAAAGGAGAAAAGGGAGGGAG... \n", "114599 AAATGTATCTGTCTTTTGACAACATAAAATGTCTTGTGTCTAAACA... \n", "114600 GTGTCTGGACTTCCTTAGAATGAATTTCTGTTGGCTGTGCTTTTTC... \n", "114601 GTTTTGTGCCTGTCTCATTTTTTGTTGTTGTTGAAAACTGAACATT... \n", "114602 AAAATTAAGTGCAGAAAATATGTTTAACATTATATAGGATGTCTTG... \n", "114603 TGCATTATGCAATGATGTAGAATACTGTTTGTAAAGTAGTTGTCTA... \n", "114604 TAGAATACTGTTTGTAAAGTAGTTGTCTAGACTCTAGTGAAAATAA... \n", "\n", " wide_seq_ext pas_pos \\\n", "0 TGCGTGGGTTTTCTCTGAGTTCTCCAGCTTCCTCCCACATTCCAAA... 12788705 \n", "1 TGGAACACCTGATGGTGAAACCAAACAAATACAAAATCCTTCTCCA... 94458420 \n", "2 GAGTTTTAATAATTGTAACTTTTTAAATGTCTATAGCACTGAAGTT... 229653571 \n", "3 AAGTGCTTTTTCTCCATGGATGAGGCTAGACCCTAAGAAGTAATTA... 229652609 \n", "4 GTAATTAAGTCAATGTAAATCAAATGGAAGTTTTCCCATGAACTAA... 229652570 \n", "5 TGTGTTCTTTATAAAGTGTGATTTTCAGAAAGCAAACAACACAATT... 229652351 \n", "6 CAATTTTATCTTTAGGTAATATTTTATATCATAGATTAAAATTTAT... 229652210 \n", "7 TAGTGAACTTTATCTGTGTCTGTCACTTTTTTTTTTTTTATGACCC... 229652165 \n", "8 ATTACAGAATATACTTAGAAAGGCAAAGTACATTGTAAAATAAAGT... 94982896 \n", "9 TTAGTTTTTTTTAAAAAAAAAAACAAAGCAACAAATTAACTAGATA... 94982947 \n", "10 GTGGTAGTTGGAAACAAATCATAATGTATTATTTAAATGTTTAACA... 94983300 \n", "11 GTGTGTTAGAAGCCCATTCATTAGAAGTGTGGTGGTTATTTGGTAT... 94983669 \n", "12 TCTTTGACTGTGATTTTATGTTTAAAAAGTATGTTCTAAAATTATT... 94983783 \n", "13 TAATGACTTTATGTATTATTTGCACAGGGAGAATTGAAACTGAGTA... 94983960 \n", "14 AGGGAGAATTGAAACTGAGTATAATCAATAAGCTAGATACGAAATC... 94983985 \n", "15 TCAGAAAGGGGCATTTTGTACTCTTGTTTTTGCATAACTGGTTTTG... 94984049 \n", "16 CGAACTTGTATACTTATTTTCTGTTCAGATTAAAAAAAAAAAAAAA... 94984196 \n", "17 GCAGTGGGAAATGGTAGTTTAATCCGAAGAATAAACCAAAGAATAA... 94984889 \n", "18 CAAATTTGCCTTCCGAGAGGCTGTGAGCAAACTGGAACTCAGCCTG... 179076831 \n", "19 TTCAGCAGCTGCTGGTGTGCCCGGGACAAACCCTGTCCTTAATAAC... 179076768 \n", "20 GGTACTAATGGTGATTATGCTCCAATTTACCTAATGAATTTGGTGG... 179076299 \n", "21 GATTAGCCTTAAAAAATTTGGCCCTAAGAAATTCATTCAGTGTTTT... 179073543 \n", "22 GCCTTGGTGGCCACTTCTGAATTATAGCTACATTTCATTATGACCC... 179071745 \n", "23 AAAGCTGGAGGCAAACTGTCGAATGCTAGCAGGCTTTATGAAAGGA... 179069576 \n", "24 TCTTTCCTTGGATGAACAGCAGTGGCGTGGTTGGTGTGTTGACTGT... 179068920 \n", "25 AAAGGTCCCGCCCCGCAGGTGTGTATGTGGTGCACAGAGGGTGAGG... 179068650 \n", "26 ATAGTGAGACAATGTGGGATTTAACTAAAAACACATCAATTGTGTG... 179068566 \n", "27 TGAGACAATGTGGGATTTAACTAAAAACACATCAATTGTGTGTCAC... 179068562 \n", "28 GTTCTTAATTGTTATTGTAATATATTTTCAGTTGTTTTTCTAATTT... 179068493 \n", "29 TGCTTTCTCTGTCTTCTCACAAGGTTTGCCAAGTTGTGTTCTGTTT... 179068366 \n", "... ... ... \n", "114575 TTTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTG... 15360284 \n", "114576 TGTTTCTCTCTATTTAAGTCCTTGTTGGTTTTTTTCATTAGCTTTT... 15356350 \n", "114577 ATTTTGATATGTTGTATTTTAATTTTTATTCAGTTTTATGTATTTT... 15347429 \n", "114578 CCCTTCTGCGGCCCATAAAAGCCCTGGGTTCAGGCAGAGCTGAGCA... 15346489 \n", "114579 CTTCCAGGCTGAGTGGGTGGAGCAAGCCCAGCAGGCCTGAGCAAAA... 15345808 \n", "114580 CATTTTTTAAAGCCAGTCTTGTTCACATCCATTACTATACATTGAA... 2848257 \n", "114581 TTTTAAAGAGGTACAAAATCTTACAAGGACATAAATTATTATTTGG... 2850501 \n", "114582 CAAGGACATAAATTATTATTTGGTTGAAAAATAGCCTATTAGATAT... 2850524 \n", "114583 GTAAAATACTTAAAATAACTATGAAGAATTCATATAGGAAGTGTGA... 2850596 \n", "114584 CATCAGTGGAATACAAAATGCTTTTTATGTAAATATTGGTAACCTT... 2850826 \n", "114585 TTTTTACCACTGATTCAGTAAATCTCCTAACTTTGCAGGAACTGGG... 21717303 \n", "114586 TATTTTTTGAGATGCGGTCTTGCTCTGTTTCCCAGTTTGGAATGCA... 21145209 \n", "114587 CCTCATGAATGGGATGAGCACTCCTACAAAAAGGATTCCAGAGAGC... 21034500 \n", "114588 CTATGAATGAGAAAGTGGGTCCCCACCAGACATTGAATCTGCCGCA... 21034408 \n", "114589 AGAAATTATTACCGATTGTAAATTTTACCAGTGGTCTCCAGAGAGG... 16905140 \n", "114590 ACCCTTGCCTGGGGTGACTGGAAGAGCTGCTTCTGTAGAATCCTGG... 14773268 \n", "114591 AGACCATCTATCTGGACGAATAGGAGAAAAGCCTAGTTGTTGTCTC... 14773219 \n", "114592 ACAAATGGATAAACAGAGGAAGGAAGGGATGGAGAAAGAGAGGAGA... 14208316 \n", "114593 GATTTCTTTTGACTCCCATGCTAATGCCGTTAACTCCTATAGACCC... 13318680 \n", "114594 TCCTATAGACCCTTCTCAGGTGCAGCCAGAGAGACACTAGCCCACT... 13318646 \n", "114595 CCTATCCCCCTGCACCCTCTCAGTGCCTCAAGAACTGCTGCAGTTC... 13313328 \n", "114596 ACGCGCGGCACAAGCTGCAGCACCACCTGCAAAAGGTGGGGCACCC... 13311189 \n", "114597 CCCTGCACAACCTCGAGGACATCCACATGAGCCTGGAGAAGGACGT... 13309498 \n", "114598 TTACAGCCCGGGCGACAGAGAAAGACTCCATCTCAAAAAAAAAAAA... 2834743 \n", "114599 AGGAGGGAGGACTTGTATGTGAGAAGTGACTTCTACCTTACTGCTT... 2834640 \n", "114600 AGGCCTTTGAACAATGTAATATAACTGATTTATAAGCTACTCTAGT... 2834108 \n", "114601 ATTTCTGTTGGCTGTGCTTTTTCTTGCGTATAGGCTGTACTTTTTT... 2834035 \n", "114602 GATTATTTTGGATAGCTTTGTTTAACGGTGAATGAAATGATTAAAA... 14802687 \n", "114603 AAATGTGTAAGTCTGTCGTTTGTTCTTGACTTCTGTCATGTTTTCA... 14804113 \n", "114604 GTTTGTTCTTGACTTCTGTCATGTTTTCAAGAATGCATTATGCAAT... 14804130 \n", "\n", " cut_mode cut_mode_hg38 chrom strand site_type rpm \n", "0 12788725 12728758 chr1 + 3_most_exon 3.328937 \n", "1 94458390 93992834 chr1 - 3_most_exon 0.877850 \n", "2 229653545 229517798 chr1 - 3_most_exon 0.984183 \n", "3 229652589 229516842 chr1 - 3_most_exon 1.306171 \n", "4 229652545 229516798 chr1 - 3_most_exon 1.047152 \n", "5 229652329 229516582 chr1 - 3_most_exon 2.855958 \n", "6 229652175 229516428 chr1 - 3_most_exon 0.786950 \n", "7 229652139 229516392 chr1 - 3_most_exon 0.823096 \n", "8 94982938 94517382 chr1 + 3_most_exon 0.942836 \n", "9 94982973 94517417 chr1 + 3_most_exon 1.032161 \n", "10 94983315 94517759 chr1 + 3_most_exon 0.691924 \n", "11 94983671 94518115 chr1 + 3_most_exon 0.897813 \n", "12 94983784 94518228 chr1 + 3_most_exon 1.012715 \n", "13 94983984 94518428 chr1 + 3_most_exon 1.355078 \n", "14 94984010 94518454 chr1 + 3_most_exon 1.552984 \n", "15 94984085 94518529 chr1 + 3_most_exon 2.642226 \n", "16 94984219 94518663 chr1 + 3_most_exon 2.419415 \n", "17 94984907 94519351 chr1 + 3_most_exon 1.366080 \n", "18 179076801 179107666 chr1 - 3_most_exon 1.029291 \n", "19 179076734 179107599 chr1 - 3_most_exon 1.977591 \n", "20 179076275 179107140 chr1 - 3_most_exon 11.955727 \n", "21 179073519 179104384 chr1 - 3_most_exon 1.463386 \n", "22 179071726 179102591 chr1 - 3_most_exon 1.452910 \n", "23 179069558 179100423 chr1 - 3_most_exon 1.254179 \n", "24 179068898 179099763 chr1 - 3_most_exon 1.269648 \n", "25 179068626 179099491 chr1 - 3_most_exon 1.220517 \n", "26 179068543 179099408 chr1 - 3_most_exon 26.100034 \n", "27 179068518 179099383 chr1 - 3_most_exon 0.908233 \n", "28 179068465 179099330 chr1 - 3_most_exon 39.062476 \n", "29 179068345 179099210 chr1 - 3_most_exon 1.294196 \n", "... ... ... ... ... ... ... \n", "114575 15360265 13248385 chrY - 3_most_exon 1.087289 \n", "114576 15356321 13244440 chrY - 3_most_exon 1.461156 \n", "114577 15347398 13235517 chrY - 3_most_exon 2.089522 \n", "114578 15346466 13234585 chrY - 3_most_exon 4.872050 \n", "114579 15345776 13233895 chrY - 3_most_exon 1.447637 \n", "114580 2848286 2980245 chrY + 3_most_exon 0.684789 \n", "114581 2850530 2982489 chrY + 3_most_exon 4.418879 \n", "114582 2850555 2982514 chrY + 3_most_exon 1.460987 \n", "114583 2850618 2982577 chrY + 3_most_exon 1.472577 \n", "114584 2850847 2982806 chrY + 3_most_exon 1.365811 \n", "114585 21717276 19555390 chrY - 3_most_exon 1.638900 \n", "114586 21145185 18983299 chrY - 3_most_exon 1.570060 \n", "114587 21034482 18872596 chrY - 3_most_exon 1.726768 \n", "114588 21034387 18872501 chrY - 3_most_exon 1.622725 \n", "114589 16905123 14793243 chrY - 3_most_exon 1.118751 \n", "114590 14773246 12661315 chrY - 3_most_exon 3.527876 \n", "114591 14773198 12661267 chrY - 3_most_exon 1.662990 \n", "114592 14208308 12087602 chrY - 3_most_exon 2.291199 \n", "114593 13318659 11162983 chrY - 3_most_exon 8.626132 \n", "114594 13318623 11162947 chrY - 3_most_exon 0.828349 \n", "114595 13313303 11157627 chrY - 3_most_exon 1.055492 \n", "114596 13311165 11155489 chrY - 3_most_exon 1.098569 \n", "114597 13309477 11153801 chrY - 3_most_exon 3.041256 \n", "114598 2834722 2966681 chrY - 3_most_exon 1.064109 \n", "114599 2834619 2966578 chrY - 3_most_exon 3.441034 \n", "114600 2834085 2966044 chrY - 3_most_exon 0.482540 \n", "114601 2834002 2965961 chrY - 3_most_exon 0.885032 \n", "114602 14802713 12690784 chrY + 3_most_exon 3.055810 \n", "114603 14804136 12692207 chrY + 3_most_exon 11.683354 \n", "114604 14804162 12692233 chrY + 3_most_exon 3.513120 \n", "\n", "[114605 rows x 16 columns]\n" ] } ], "source": [ "\n", "df = pd.read_csv('native_data/polyadb_processed_v3_w_hg38.csv', delimiter=',')\n", "df = df.query(\"site_type == '3_most_exon'\").copy().reset_index(drop=True)\n", "#df = df.loc[~df['wide_seq_ext'].str.slice(175 - 70, 175 - 70 + 205).str.contains(\"AAAAAAA|AAAGAAAA|AAACAAAA|AAAAGAAA|AAAACAAA\")].copy().reset_index(drop=True)\n", "\n", "print(df)\n" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "114605\n" ] } ], "source": [ "#Get PolyADB positions in hg38 coordinates\n", "'''\n", "polyadb_bed_hg19 = pd.read_csv(\"polyadb_coordinates_utr3_hg19.bed\", sep='\\t', header=None, names=['chrom', 'pas_pos_hg19', 'end', 'gene', 'gene_id', 'strand'])\n", "polyadb_bed_hg38 = pd.read_csv(\"polyadb_coordinates_utr3_hg38.bed\", sep='\\t', header=None, names=['chrom', 'pas_pos_hg38', 'end', 'gene', 'gene_id', 'strand'])\n", "\n", "polyadb_bed_hg38 = polyadb_bed_hg38.join(polyadb_bed_hg19[['gene_id', 'pas_pos_hg19']].set_index('gene_id'), on='gene_id', how='inner').copy().reset_index(drop=True)\n", "\n", "polyadb_bed_hg38['padb_join_id'] = polyadb_bed_hg38['chrom'] + \"_\" + polyadb_bed_hg38['pas_pos_hg19'].astype(str) + \"_\" + polyadb_bed_hg38['gene']\n", "df['padb_join_id'] = df['chrom'] + \"_\" + df['pas_pos'].astype(str) + \"_\" + df['gene']\n", "\n", "df = df.join(polyadb_bed_hg38[['padb_join_id', 'pas_pos_hg38']].set_index(\"padb_join_id\"), on='padb_join_id', how='inner').copy().reset_index(drop=True)\n", "df['cut_mode_hg38'] = df['cut_mode'] - df['pas_pos'] + df['pas_pos_hg38']\n", "'''\n", "print(len(df))\n" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [], "source": [ "#Store PolyADB cut mode intervals in hg38\n", "\n", "df['start'] = df['cut_mode_hg38'] - 35\n", "df['end'] = df['cut_mode_hg38'] + 35\n", "\n", "polyadb_bed = df[['chrom', 'start', 'end', 'gene', 'gene_id', 'strand']].copy().reset_index(drop=True)\n", "\n", "polyadb_bed = polyadb_bed.loc[(~polyadb_bed['start'].isnull()) & (polyadb_bed['start'] > -1)].copy().reset_index(drop=True)\n", "\n", "polyadb_bed.to_csv(\"polyadb_cut_mode_coordinates_hg38.bed\", sep='\\t', header=False, index=False)\n" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "/home/jlinder2/anaconda3/envs/tensorflow/lib/python3.6/site-packages/IPython/core/interactiveshell.py:2785: DtypeWarning: Columns (0) have mixed types. Specify dtype option on import or set low_memory=False.\n", " interactivity=interactivity, compiler=compiler, result=result)\n" ] } ], "source": [ "#Load perturb-seq experimental data (knockout gene-level)\n", "\n", "perturb_df = pd.read_csv(\"perturb/pseudobulk_counts_de_novo_polyA_sites_by_gene.tsv\", sep='\\t').query(\"misprime == False\").copy().reset_index(drop=True)\n", "\n", "perturb_df['start'] = perturb_df['Position'].astype(int)\n", "perturb_df['end'] = perturb_df['Position'].astype(int) + 1\n", "\n", "perturb_df = perturb_df.rename(columns={'Chromosome' : 'chrom', 'symbol' : 'gene'})\n", "perturb_df['chrom'] = 'chr' + perturb_df['chrom'].astype(str)\n", "\n", "perturb_df = perturb_df[['chrom', 'start', 'end', 'gene', 'NT', 'CDC73', 'CPSF1', 'CPSF2', 'CPSF3', 'CPSF3L', 'CPSF4', 'CPSF6', 'CSTF1', 'CSTF3', 'CTR9', 'FIP1L1', 'LEO1', 'NUDT21', 'PABPC1', 'PABPN1', 'PAF1', 'PAPOLA', 'PCF11', 'RBBP6', 'RPRD1A', 'RPRD1B', 'SCAF8', 'SF3A1', 'SRSF3', 'SYMPK', 'THOC5']]\n" ] }, { "cell_type": "code", "execution_count": 6, "metadata": { "scrolled": true }, "outputs": [ { "data": { "text/html": [ "
| \n", " | chrom | \n", "start | \n", "end | \n", "gene | \n", "NT | \n", "CDC73 | \n", "CPSF1 | \n", "CPSF2 | \n", "CPSF3 | \n", "CPSF3L | \n", "... | \n", "PAPOLA | \n", "PCF11 | \n", "RBBP6 | \n", "RPRD1A | \n", "RPRD1B | \n", "SCAF8 | \n", "SF3A1 | \n", "SRSF3 | \n", "SYMPK | \n", "THOC5 | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "chrX | \n", "293484 | \n", "293485 | \n", "PLCXD1 | \n", "349.0 | \n", "66.0 | \n", "49.0 | \n", "31.0 | \n", "21.0 | \n", "15.0 | \n", "... | \n", "114.0 | \n", "12.0 | \n", "57.0 | \n", "53.0 | \n", "205.0 | \n", "179.0 | \n", "3.0 | \n", "45.0 | \n", "7.0 | \n", "35.0 | \n", "
| 1 | \n", "chrX | \n", "299444 | \n", "299445 | \n", "PLCXD1 | \n", "274.0 | \n", "63.0 | \n", "50.0 | \n", "47.0 | \n", "40.0 | \n", "7.0 | \n", "... | \n", "34.0 | \n", "10.0 | \n", "39.0 | \n", "90.0 | \n", "135.0 | \n", "172.0 | \n", "2.0 | \n", "56.0 | \n", "7.0 | \n", "35.0 | \n", "
| 2 | \n", "chrX | \n", "303356 | \n", "303357 | \n", "PLCXD1 | \n", "1036.0 | \n", "128.0 | \n", "179.0 | \n", "237.0 | \n", "202.0 | \n", "80.0 | \n", "... | \n", "391.0 | \n", "88.0 | \n", "211.0 | \n", "223.0 | \n", "327.0 | \n", "565.0 | \n", "13.0 | \n", "158.0 | \n", "57.0 | \n", "174.0 | \n", "
| 3 | \n", "chrX | \n", "1309922 | \n", "1309923 | \n", "CSF2RA | \n", "18.0 | \n", "2.0 | \n", "3.0 | \n", "2.0 | \n", "3.0 | \n", "2.0 | \n", "... | \n", "12.0 | \n", "1.0 | \n", "5.0 | \n", "8.0 | \n", "5.0 | \n", "15.0 | \n", "0.0 | \n", "2.0 | \n", "1.0 | \n", "1.0 | \n", "
| 4 | \n", "chrX | \n", "1599220 | \n", "1599221 | \n", "AKAP17A | \n", "39.0 | \n", "6.0 | \n", "6.0 | \n", "3.0 | \n", "11.0 | \n", "3.0 | \n", "... | \n", "14.0 | \n", "5.0 | \n", "11.0 | \n", "6.0 | \n", "15.0 | \n", "22.0 | \n", "4.0 | \n", "7.0 | \n", "1.0 | \n", "4.0 | \n", "
| 5 | \n", "chrX | \n", "1602520 | \n", "1602521 | \n", "AKAP17A | \n", "1019.0 | \n", "162.0 | \n", "178.0 | \n", "209.0 | \n", "226.0 | \n", "140.0 | \n", "... | \n", "353.0 | \n", "126.0 | \n", "293.0 | \n", "169.0 | \n", "422.0 | \n", "575.0 | \n", "71.0 | \n", "125.0 | \n", "61.0 | \n", "156.0 | \n", "
| 6 | \n", "chrX | \n", "2717856 | \n", "2717857 | \n", "CD99 | \n", "356.0 | \n", "67.0 | \n", "47.0 | \n", "58.0 | \n", "75.0 | \n", "25.0 | \n", "... | \n", "91.0 | \n", "33.0 | \n", "87.0 | \n", "85.0 | \n", "147.0 | \n", "216.0 | \n", "10.0 | \n", "41.0 | \n", "18.0 | \n", "31.0 | \n", "
| 7 | \n", "chrX | \n", "2733667 | \n", "2733668 | \n", "CD99 | \n", "80.0 | \n", "18.0 | \n", "8.0 | \n", "8.0 | \n", "5.0 | \n", "0.0 | \n", "... | \n", "8.0 | \n", "2.0 | \n", "9.0 | \n", "23.0 | \n", "33.0 | \n", "92.0 | \n", "1.0 | \n", "21.0 | \n", "1.0 | \n", "8.0 | \n", "
| 8 | \n", "chrX | \n", "2736437 | \n", "2736438 | \n", "CD99 | \n", "40.0 | \n", "4.0 | \n", "4.0 | \n", "8.0 | \n", "6.0 | \n", "1.0 | \n", "... | \n", "9.0 | \n", "3.0 | \n", "12.0 | \n", "6.0 | \n", "16.0 | \n", "23.0 | \n", "0.0 | \n", "2.0 | \n", "2.0 | \n", "4.0 | \n", "
| 9 | \n", "chrX | \n", "2741309 | \n", "2741310 | \n", "CD99 | \n", "12141.0 | \n", "1397.0 | \n", "1676.0 | \n", "1970.0 | \n", "2428.0 | \n", "816.0 | \n", "... | \n", "3983.0 | \n", "1292.0 | \n", "3508.0 | \n", "2336.0 | \n", "4527.0 | \n", "7130.0 | \n", "273.0 | \n", "853.0 | \n", "544.0 | \n", "1144.0 | \n", "
| 10 | \n", "chrX | \n", "2844041 | \n", "2844042 | \n", "GYG2 | \n", "28.0 | \n", "17.0 | \n", "4.0 | \n", "2.0 | \n", "4.0 | \n", "2.0 | \n", "... | \n", "10.0 | \n", "1.0 | \n", "2.0 | \n", "4.0 | \n", "18.0 | \n", "18.0 | \n", "0.0 | \n", "5.0 | \n", "0.0 | \n", "0.0 | \n", "
| 11 | \n", "chrX | \n", "2882288 | \n", "2882289 | \n", "GYG2 | \n", "81.0 | \n", "7.0 | \n", "10.0 | \n", "13.0 | \n", "7.0 | \n", "1.0 | \n", "... | \n", "27.0 | \n", "4.0 | \n", "5.0 | \n", "16.0 | \n", "19.0 | \n", "45.0 | \n", "3.0 | \n", "2.0 | \n", "2.0 | \n", "7.0 | \n", "
| 12 | \n", "chrX | \n", "2882818 | \n", "2882819 | \n", "GYG2 | \n", "327.0 | \n", "29.0 | \n", "29.0 | \n", "34.0 | \n", "27.0 | \n", "12.0 | \n", "... | \n", "103.0 | \n", "25.0 | \n", "77.0 | \n", "75.0 | \n", "129.0 | \n", "219.0 | \n", "7.0 | \n", "18.0 | \n", "10.0 | \n", "18.0 | \n", "
| 13 | \n", "chrX | \n", "7353066 | \n", "7353067 | \n", "STS | \n", "97.0 | \n", "14.0 | \n", "17.0 | \n", "26.0 | \n", "29.0 | \n", "13.0 | \n", "... | \n", "22.0 | \n", "9.0 | \n", "32.0 | \n", "24.0 | \n", "44.0 | \n", "54.0 | \n", "0.0 | \n", "4.0 | \n", "10.0 | \n", "15.0 | \n", "
| 14 | \n", "chrX | \n", "7354641 | \n", "7354642 | \n", "STS | \n", "193.0 | \n", "18.0 | \n", "37.0 | \n", "64.0 | \n", "41.0 | \n", "4.0 | \n", "... | \n", "68.0 | \n", "17.0 | \n", "51.0 | \n", "29.0 | \n", "97.0 | \n", "108.0 | \n", "3.0 | \n", "9.0 | \n", "11.0 | \n", "15.0 | \n", "
| 15 | \n", "chrX | \n", "8466510 | \n", "8466511 | \n", "VCX3B | \n", "5.0 | \n", "3.0 | \n", "6.0 | \n", "7.0 | \n", "0.0 | \n", "1.0 | \n", "... | \n", "1.0 | \n", "0.0 | \n", "5.0 | \n", "0.0 | \n", "4.0 | \n", "1.0 | \n", "0.0 | \n", "4.0 | \n", "0.0 | \n", "3.0 | \n", "
| 16 | \n", "chrX | \n", "9702292 | \n", "9702293 | \n", "TBL1X | \n", "73.0 | \n", "11.0 | \n", "17.0 | \n", "12.0 | \n", "10.0 | \n", "4.0 | \n", "... | \n", "28.0 | \n", "6.0 | \n", "21.0 | \n", "25.0 | \n", "30.0 | \n", "46.0 | \n", "2.0 | \n", "5.0 | \n", "2.0 | \n", "8.0 | \n", "
| 17 | \n", "chrX | \n", "9719743 | \n", "9719744 | \n", "TBL1X | \n", "667.0 | \n", "52.0 | \n", "64.0 | \n", "88.0 | \n", "99.0 | \n", "34.0 | \n", "... | \n", "194.0 | \n", "57.0 | \n", "172.0 | \n", "125.0 | \n", "239.0 | \n", "371.0 | \n", "4.0 | \n", "38.0 | \n", "25.0 | \n", "67.0 | \n", "
| 18 | \n", "chrX | \n", "9741053 | \n", "9741054 | \n", "TBL1X | \n", "12.0 | \n", "1.0 | \n", "3.0 | \n", "4.0 | \n", "6.0 | \n", "5.0 | \n", "... | \n", "6.0 | \n", "2.0 | \n", "4.0 | \n", "5.0 | \n", "5.0 | \n", "10.0 | \n", "0.0 | \n", "3.0 | \n", "2.0 | \n", "0.0 | \n", "
| 19 | \n", "chrX | \n", "9948359 | \n", "9948360 | \n", "SHROOM2 | \n", "129.0 | \n", "19.0 | \n", "23.0 | \n", "26.0 | \n", "28.0 | \n", "10.0 | \n", "... | \n", "40.0 | \n", "12.0 | \n", "54.0 | \n", "28.0 | \n", "55.0 | \n", "63.0 | \n", "3.0 | \n", "12.0 | \n", "10.0 | \n", "16.0 | \n", "
| 20 | \n", "chrX | \n", "9949443 | \n", "9949444 | \n", "SHROOM2 | \n", "220.0 | \n", "24.0 | \n", "43.0 | \n", "67.0 | \n", "58.0 | \n", "20.0 | \n", "... | \n", "96.0 | \n", "26.0 | \n", "56.0 | \n", "46.0 | \n", "119.0 | \n", "144.0 | \n", "6.0 | \n", "17.0 | \n", "15.0 | \n", "18.0 | \n", "
| 21 | \n", "chrX | \n", "10016763 | \n", "10016764 | \n", "WWC3 | \n", "222.0 | \n", "51.0 | \n", "45.0 | \n", "42.0 | \n", "48.0 | \n", "24.0 | \n", "... | \n", "90.0 | \n", "18.0 | \n", "66.0 | \n", "39.0 | \n", "80.0 | \n", "134.0 | \n", "8.0 | \n", "44.0 | \n", "15.0 | \n", "82.0 | \n", "
| 22 | \n", "chrX | \n", "10017211 | \n", "10017212 | \n", "WWC3 | \n", "39.0 | \n", "5.0 | \n", "6.0 | \n", "10.0 | \n", "9.0 | \n", "4.0 | \n", "... | \n", "19.0 | \n", "9.0 | \n", "12.0 | \n", "7.0 | \n", "8.0 | \n", "17.0 | \n", "1.0 | \n", "1.0 | \n", "2.0 | \n", "2.0 | \n", "
| 23 | \n", "chrX | \n", "10017571 | \n", "10017572 | \n", "WWC3 | \n", "11.0 | \n", "4.0 | \n", "5.0 | \n", "14.0 | \n", "3.0 | \n", "1.0 | \n", "... | \n", "7.0 | \n", "1.0 | \n", "8.0 | \n", "5.0 | \n", "1.0 | \n", "3.0 | \n", "0.0 | \n", "4.0 | \n", "3.0 | \n", "3.0 | \n", "
| 24 | \n", "chrX | \n", "10144474 | \n", "10144475 | \n", "WWC3 | \n", "101.0 | \n", "12.0 | \n", "54.0 | \n", "76.0 | \n", "59.0 | \n", "9.0 | \n", "... | \n", "44.0 | \n", "25.0 | \n", "34.0 | \n", "31.0 | \n", "49.0 | \n", "14.0 | \n", "2.0 | \n", "3.0 | \n", "13.0 | \n", "27.0 | \n", "
| 25 | \n", "chrX | \n", "10234779 | \n", "10234780 | \n", "CLCN4 | \n", "26.0 | \n", "2.0 | \n", "5.0 | \n", "6.0 | \n", "1.0 | \n", "2.0 | \n", "... | \n", "5.0 | \n", "1.0 | \n", "9.0 | \n", "4.0 | \n", "7.0 | \n", "10.0 | \n", "0.0 | \n", "2.0 | \n", "4.0 | \n", "5.0 | \n", "
| 26 | \n", "chrX | \n", "10237652 | \n", "10237653 | \n", "CLCN4 | \n", "24.0 | \n", "1.0 | \n", "0.0 | \n", "6.0 | \n", "6.0 | \n", "1.0 | \n", "... | \n", "12.0 | \n", "1.0 | \n", "7.0 | \n", "7.0 | \n", "10.0 | \n", "16.0 | \n", "1.0 | \n", "7.0 | \n", "0.0 | \n", "3.0 | \n", "
| 27 | \n", "chrX | \n", "11118730 | \n", "11118731 | \n", "HCCS | \n", "379.0 | \n", "65.0 | \n", "44.0 | \n", "47.0 | \n", "55.0 | \n", "39.0 | \n", "... | \n", "112.0 | \n", "25.0 | \n", "93.0 | \n", "62.0 | \n", "165.0 | \n", "249.0 | \n", "21.0 | \n", "34.0 | \n", "14.0 | \n", "47.0 | \n", "
| 28 | \n", "chrX | \n", "11121879 | \n", "11121880 | \n", "HCCS | \n", "5005.0 | \n", "763.0 | \n", "423.0 | \n", "617.0 | \n", "676.0 | \n", "337.0 | \n", "... | \n", "1190.0 | \n", "297.0 | \n", "1091.0 | \n", "950.0 | \n", "2208.0 | \n", "3124.0 | \n", "118.0 | \n", "604.0 | \n", "172.0 | \n", "465.0 | \n", "
| 29 | \n", "chrX | \n", "11122516 | \n", "11122517 | \n", "HCCS | \n", "51.0 | \n", "8.0 | \n", "7.0 | \n", "8.0 | \n", "19.0 | \n", "1.0 | \n", "... | \n", "23.0 | \n", "6.0 | \n", "16.0 | \n", "9.0 | \n", "22.0 | \n", "27.0 | \n", "1.0 | \n", "4.0 | \n", "1.0 | \n", "4.0 | \n", "
| ... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
| 47534 | \n", "chr21 | \n", "46301134 | \n", "46301135 | \n", "C21orf58 | \n", "229.0 | \n", "34.0 | \n", "46.0 | \n", "64.0 | \n", "58.0 | \n", "12.0 | \n", "... | \n", "112.0 | \n", "17.0 | \n", "65.0 | \n", "55.0 | \n", "113.0 | \n", "99.0 | \n", "6.0 | \n", "15.0 | \n", "21.0 | \n", "35.0 | \n", "
| 47535 | \n", "chr21 | \n", "46313176 | \n", "46313177 | \n", "C21orf58 | \n", "20.0 | \n", "5.0 | \n", "5.0 | \n", "4.0 | \n", "2.0 | \n", "3.0 | \n", "... | \n", "9.0 | \n", "0.0 | \n", "5.0 | \n", "5.0 | \n", "12.0 | \n", "18.0 | \n", "1.0 | \n", "2.0 | \n", "0.0 | \n", "2.0 | \n", "
| 47536 | \n", "chr21 | \n", "46321022 | \n", "46321023 | \n", "C21orf58 | \n", "121.0 | \n", "24.0 | \n", "20.0 | \n", "18.0 | \n", "26.0 | \n", "15.0 | \n", "... | \n", "36.0 | \n", "10.0 | \n", "24.0 | \n", "24.0 | \n", "43.0 | \n", "78.0 | \n", "1.0 | \n", "8.0 | \n", "3.0 | \n", "7.0 | \n", "
| 47537 | \n", "chr21 | \n", "46321427 | \n", "46321428 | \n", "C21orf58 | \n", "32.0 | \n", "4.0 | \n", "1.0 | \n", "3.0 | \n", "4.0 | \n", "1.0 | \n", "... | \n", "15.0 | \n", "1.0 | \n", "2.0 | \n", "7.0 | \n", "10.0 | \n", "12.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "
| 47538 | \n", "chr21 | \n", "46322416 | \n", "46322417 | \n", "C21orf58 | \n", "43.0 | \n", "5.0 | \n", "6.0 | \n", "4.0 | \n", "3.0 | \n", "3.0 | \n", "... | \n", "12.0 | \n", "1.0 | \n", "4.0 | \n", "4.0 | \n", "8.0 | \n", "24.0 | \n", "2.0 | \n", "3.0 | \n", "2.0 | \n", "1.0 | \n", "
| 47539 | \n", "chr21 | \n", "46323009 | \n", "46323010 | \n", "C21orf58 | \n", "51.0 | \n", "3.0 | \n", "8.0 | \n", "6.0 | \n", "8.0 | \n", "3.0 | \n", "... | \n", "18.0 | \n", "1.0 | \n", "9.0 | \n", "8.0 | \n", "13.0 | \n", "28.0 | \n", "0.0 | \n", "4.0 | \n", "1.0 | \n", "5.0 | \n", "
| 47540 | \n", "chrM | \n", "4402 | \n", "4403 | \n", "MT-ND1 | \n", "97471.0 | \n", "10727.0 | \n", "17813.0 | \n", "21401.0 | \n", "21728.0 | \n", "5469.0 | \n", "... | \n", "33724.0 | \n", "9194.0 | \n", "22724.0 | \n", "37521.0 | \n", "37739.0 | \n", "55028.0 | \n", "1762.0 | \n", "8064.0 | \n", "5025.0 | \n", "9950.0 | \n", "
| 47541 | \n", "chrM | \n", "4874 | \n", "4875 | \n", "MT-ND2 | \n", "3442.0 | \n", "781.0 | \n", "1903.0 | \n", "1481.0 | \n", "1072.0 | \n", "388.0 | \n", "... | \n", "1089.0 | \n", "402.0 | \n", "949.0 | \n", "1473.0 | \n", "1192.0 | \n", "1832.0 | \n", "310.0 | \n", "347.0 | \n", "315.0 | \n", "1055.0 | \n", "
| 47542 | \n", "chrM | \n", "5516 | \n", "5517 | \n", "MT-ND2 | \n", "161152.0 | \n", "26722.0 | \n", "64478.0 | \n", "59672.0 | \n", "45752.0 | \n", "12101.0 | \n", "... | \n", "51116.0 | \n", "18076.0 | \n", "42266.0 | \n", "62672.0 | \n", "56966.0 | \n", "85135.0 | \n", "5327.0 | \n", "12046.0 | \n", "12750.0 | \n", "23927.0 | \n", "
| 47543 | \n", "chrM | \n", "5900 | \n", "5901 | \n", "MT-ND2 | \n", "7060.0 | \n", "881.0 | \n", "1846.0 | \n", "2011.0 | \n", "2010.0 | \n", "399.0 | \n", "... | \n", "2696.0 | \n", "832.0 | \n", "2200.0 | \n", "1072.0 | \n", "2765.0 | \n", "4054.0 | \n", "169.0 | \n", "742.0 | \n", "535.0 | \n", "927.0 | \n", "
| 47544 | \n", "chrM | \n", "6534 | \n", "6535 | \n", "MT-CO1 | \n", "69097.0 | \n", "7881.0 | \n", "13739.0 | \n", "15455.0 | \n", "16516.0 | \n", "3338.0 | \n", "... | \n", "23893.0 | \n", "8083.0 | \n", "21089.0 | \n", "12623.0 | \n", "27872.0 | \n", "38585.0 | \n", "1440.0 | \n", "4086.0 | \n", "3665.0 | \n", "7889.0 | \n", "
| 47545 | \n", "chrM | \n", "7115 | \n", "7116 | \n", "MT-CO1 | \n", "47710.0 | \n", "5792.0 | \n", "10685.0 | \n", "12721.0 | \n", "12303.0 | \n", "3086.0 | \n", "... | \n", "16290.0 | \n", "5501.0 | \n", "15028.0 | \n", "8227.0 | \n", "19079.0 | \n", "27416.0 | \n", "1185.0 | \n", "3189.0 | \n", "3202.0 | \n", "7032.0 | \n", "
| 47546 | \n", "chrM | \n", "7439 | \n", "7440 | \n", "MT-CO1 | \n", "712899.0 | \n", "66308.0 | \n", "97667.0 | \n", "143284.0 | \n", "162471.0 | \n", "31702.0 | \n", "... | \n", "249056.0 | \n", "76925.0 | \n", "197512.0 | \n", "82165.0 | \n", "302205.0 | \n", "422529.0 | \n", "11362.0 | \n", "40206.0 | \n", "35995.0 | \n", "62462.0 | \n", "
| 47547 | \n", "chrM | \n", "8294 | \n", "8295 | \n", "MT-CO2 | \n", "1131025.0 | \n", "121149.0 | \n", "187490.0 | \n", "224730.0 | \n", "230681.0 | \n", "53614.0 | \n", "... | \n", "367953.0 | \n", "120726.0 | \n", "311390.0 | \n", "209615.0 | \n", "433037.0 | \n", "609931.0 | \n", "17969.0 | \n", "66104.0 | \n", "50592.0 | \n", "116558.0 | \n", "
| 47548 | \n", "chrM | \n", "9207 | \n", "9208 | \n", "MT-ATP6 | \n", "769101.0 | \n", "113270.0 | \n", "195132.0 | \n", "204341.0 | \n", "190157.0 | \n", "41156.0 | \n", "... | \n", "254845.0 | \n", "88300.0 | \n", "236634.0 | \n", "232539.0 | \n", "282356.0 | \n", "428224.0 | \n", "14533.0 | \n", "43492.0 | \n", "41806.0 | \n", "77761.0 | \n", "
| 47549 | \n", "chrM | \n", "9991 | \n", "9992 | \n", "MT-CO3 | \n", "942328.0 | \n", "90177.0 | \n", "168006.0 | \n", "204315.0 | \n", "205105.0 | \n", "38004.0 | \n", "... | \n", "324703.0 | \n", "93999.0 | \n", "254561.0 | \n", "216205.0 | \n", "357633.0 | \n", "516692.0 | \n", "13692.0 | \n", "52770.0 | \n", "44826.0 | \n", "97510.0 | \n", "
| 47550 | \n", "chrM | \n", "10404 | \n", "10405 | \n", "MT-ND3 | \n", "410615.0 | \n", "70415.0 | \n", "149244.0 | \n", "136603.0 | \n", "112429.0 | \n", "23843.0 | \n", "... | \n", "132119.0 | \n", "47861.0 | \n", "118202.0 | \n", "193483.0 | \n", "143076.0 | \n", "210334.0 | \n", "8604.0 | \n", "27109.0 | \n", "27945.0 | \n", "49768.0 | \n", "
| 47551 | \n", "chrM | \n", "10946 | \n", "10947 | \n", "MT-ND4 | \n", "24534.0 | \n", "4203.0 | \n", "9287.0 | \n", "8612.0 | \n", "7227.0 | \n", "1450.0 | \n", "... | \n", "8153.0 | \n", "2956.0 | \n", "7533.0 | \n", "8182.0 | \n", "8362.0 | \n", "12710.0 | \n", "661.0 | \n", "1721.0 | \n", "1804.0 | \n", "3891.0 | \n", "
| 47552 | \n", "chrM | \n", "11326 | \n", "11327 | \n", "MT-ND4 | \n", "15820.0 | \n", "2472.0 | \n", "6056.0 | \n", "5854.0 | \n", "4873.0 | \n", "1031.0 | \n", "... | \n", "5322.0 | \n", "1999.0 | \n", "5367.0 | \n", "6627.0 | \n", "5513.0 | \n", "8638.0 | \n", "539.0 | \n", "1160.0 | \n", "1291.0 | \n", "2943.0 | \n", "
| 47553 | \n", "chrM | \n", "12142 | \n", "12143 | \n", "MT-ND4 | \n", "499343.0 | \n", "56106.0 | \n", "84547.0 | \n", "107740.0 | \n", "107939.0 | \n", "25895.0 | \n", "... | \n", "164071.0 | \n", "47958.0 | \n", "118091.0 | \n", "105913.0 | \n", "187450.0 | \n", "280727.0 | \n", "8461.0 | \n", "36212.0 | \n", "23365.0 | \n", "55436.0 | \n", "
| 47554 | \n", "chrM | \n", "13008 | \n", "13009 | \n", "MT-ND5 | \n", "39407.0 | \n", "5570.0 | \n", "8354.0 | \n", "8779.0 | \n", "9235.0 | \n", "1791.0 | \n", "... | \n", "13064.0 | \n", "4394.0 | \n", "11105.0 | \n", "8145.0 | \n", "12860.0 | \n", "22688.0 | \n", "705.0 | \n", "2331.0 | \n", "2130.0 | \n", "4393.0 | \n", "
| 47555 | \n", "chrM | \n", "13992 | \n", "13993 | \n", "MT-ND5 | \n", "11492.0 | \n", "1407.0 | \n", "2310.0 | \n", "2854.0 | \n", "2965.0 | \n", "686.0 | \n", "... | \n", "3526.0 | \n", "1320.0 | \n", "3074.0 | \n", "1853.0 | \n", "4138.0 | \n", "6628.0 | \n", "268.0 | \n", "960.0 | \n", "711.0 | \n", "1802.0 | \n", "
| 47556 | \n", "chrM | \n", "14747 | \n", "14748 | \n", "MT-ND5 | \n", "23396.0 | \n", "2596.0 | \n", "2848.0 | \n", "5522.0 | \n", "6476.0 | \n", "978.0 | \n", "... | \n", "8422.0 | \n", "2951.0 | \n", "8120.0 | \n", "2481.0 | \n", "9710.0 | \n", "14555.0 | \n", "323.0 | \n", "1560.0 | \n", "1432.0 | \n", "2311.0 | \n", "
| 47557 | \n", "chrM | \n", "15887 | \n", "15888 | \n", "MT-CYB | \n", "506445.0 | \n", "51806.0 | \n", "90860.0 | \n", "127597.0 | \n", "131681.0 | \n", "24342.0 | \n", "... | \n", "180604.0 | \n", "60051.0 | \n", "171024.0 | \n", "129651.0 | \n", "204620.0 | \n", "283866.0 | \n", "8134.0 | \n", "30467.0 | \n", "29304.0 | \n", "51724.0 | \n", "
| 47558 | \n", "chrM | \n", "16557 | \n", "16558 | \n", "MT-CYB | \n", "1544.0 | \n", "236.0 | \n", "416.0 | \n", "493.0 | \n", "480.0 | \n", "64.0 | \n", "... | \n", "513.0 | \n", "198.0 | \n", "599.0 | \n", "254.0 | \n", "524.0 | \n", "908.0 | \n", "44.0 | \n", "80.0 | \n", "129.0 | \n", "192.0 | \n", "
| 47559 | \n", "chrM | \n", "12589 | \n", "12590 | \n", "MT-ND6 | \n", "5396.0 | \n", "536.0 | \n", "1331.0 | \n", "1280.0 | \n", "1143.0 | \n", "200.0 | \n", "... | \n", "1968.0 | \n", "522.0 | \n", "1493.0 | \n", "1018.0 | \n", "1710.0 | \n", "2749.0 | \n", "77.0 | \n", "269.0 | \n", "283.0 | \n", "602.0 | \n", "
| 47560 | \n", "chrM | \n", "13043 | \n", "13044 | \n", "MT-ND6 | \n", "5952.0 | \n", "620.0 | \n", "1574.0 | \n", "1435.0 | \n", "1304.0 | \n", "239.0 | \n", "... | \n", "2086.0 | \n", "615.0 | \n", "1515.0 | \n", "1164.0 | \n", "1763.0 | \n", "2948.0 | \n", "102.0 | \n", "395.0 | \n", "293.0 | \n", "647.0 | \n", "
| 47561 | \n", "chrM | \n", "13403 | \n", "13404 | \n", "MT-ND6 | \n", "5654.0 | \n", "644.0 | \n", "1617.0 | \n", "1515.0 | \n", "1307.0 | \n", "237.0 | \n", "... | \n", "2010.0 | \n", "591.0 | \n", "1593.0 | \n", "1202.0 | \n", "1734.0 | \n", "2794.0 | \n", "93.0 | \n", "317.0 | \n", "278.0 | \n", "649.0 | \n", "
| 47562 | \n", "chrM | \n", "13768 | \n", "13769 | \n", "MT-ND6 | \n", "12441.0 | \n", "1404.0 | \n", "3770.0 | \n", "3326.0 | \n", "2827.0 | \n", "428.0 | \n", "... | \n", "4441.0 | \n", "1308.0 | \n", "3713.0 | \n", "2896.0 | \n", "4107.0 | \n", "6309.0 | \n", "220.0 | \n", "585.0 | \n", "686.0 | \n", "1150.0 | \n", "
| 47563 | \n", "chrM | \n", "14123 | \n", "14124 | \n", "MT-ND6 | \n", "38851.0 | \n", "4750.0 | \n", "10819.0 | \n", "10066.0 | \n", "8939.0 | \n", "1075.0 | \n", "... | \n", "14100.0 | \n", "4305.0 | \n", "12045.0 | \n", "9608.0 | \n", "13198.0 | \n", "20205.0 | \n", "518.0 | \n", "1623.0 | \n", "1967.0 | \n", "2904.0 | \n", "
47564 rows × 31 columns
\n", "| \n", " | gene | \n", "gene_id | \n", "sitenum | \n", "num_sites | \n", "pas | \n", "seq | \n", "seq_ext | \n", "wide_seq | \n", "wide_seq_ext | \n", "pas_pos | \n", "... | \n", "PCF11 | \n", "RBBP6 | \n", "RPRD1A | \n", "RPRD1B | \n", "SCAF8 | \n", "SF3A1 | \n", "SRSF3 | \n", "SYMPK | \n", "THOC5 | \n", "total_count | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "ABCB10 | \n", "ABCB10.6 | \n", "2 | \n", "7 | \n", "0 | \n", "GTTAAAGATTGAAGCTATTGTCAAATGACAACTTTAAAAAGGCAAT... | \n", "TGGAATATTTTAATTAATATAGCATGGCACCTCATTTTCTTTTGCC... | \n", "TCAGGTTTTGTATTTTCTTTTCTTGTGGAATATTTTAATTAATATA... | \n", "GAGTTTTAATAATTGTAACTTTTTAAATGTCTATAGCACTGAAGTT... | \n", "229653571 | \n", "... | \n", "3.0 | \n", "14.0 | \n", "17.0 | \n", "30.0 | \n", "39.0 | \n", "1.0 | \n", "4.0 | \n", "5.0 | \n", "17.0 | \n", "576.0 | \n", "
| 1 | \n", "ABCB10 | \n", "ABCB10.3 | \n", "5 | \n", "7 | \n", "0 | \n", "TCTGATACATGATGTTCAATTTTATCTTTAGGTAATATTTTATATC... | \n", "TGTGCCATAGAAGTATTTACGAAATTGCATTTCATTGTTATGTTTT... | \n", "GGTTGAATCTGAGGAAAATAATCCTTGTGCCATAGAAGTATTTACG... | \n", "TGTGTTCTTTATAAAGTGTGATTTTCAGAAAGCAAACAACACAATT... | \n", "229652351 | \n", "... | \n", "140.0 | \n", "385.0 | \n", "304.0 | \n", "563.0 | \n", "865.0 | \n", "16.0 | \n", "67.0 | \n", "52.0 | \n", "125.0 | \n", "8657.0 | \n", "
| 2 | \n", "ABCD3 | \n", "ABCD3.14 | \n", "14 | \n", "15 | \n", "0 | \n", "GCCTTGACTTGAAAACATAGATAGTTTAATCTTGACTTGAAAAACA... | \n", "TGTTCTTTTTATTCTGGTATCTAAATACTGAGAAGTTCATTTATAA... | \n", "TCAGATATCCTATACAACCTTTGCTTGTTCTTTTTATTCTGGTATC... | \n", "CGAACTTGTATACTTATTTTCTGTTCAGATTAAAAAAAAAAAAAAA... | \n", "94984196 | \n", "... | \n", "180.0 | \n", "508.0 | \n", "342.0 | \n", "655.0 | \n", "971.0 | \n", "23.0 | \n", "109.0 | \n", "67.0 | \n", "133.0 | \n", "11240.0 | \n", "
| 3 | \n", "ABCD3 | \n", "ABCD3.15 | \n", "15 | \n", "15 | \n", "0 | \n", "ATGAGAAAATAAGTATGAAACAGCAATGGTAGTTTGTTTTGCATTA... | \n", "TGCCAAGACATATCACCGTGTTCTCATAATAAGTTTTTACTTTTTA... | \n", "TTTCATCCATGAGCACCACGCTGCATGCCAAGACATATCACCGTGT... | \n", "GCAGTGGGAAATGGTAGTTTAATCCGAAGAATAAACCAAAGAATAA... | \n", "94984889 | \n", "... | \n", "3.0 | \n", "18.0 | \n", "16.0 | \n", "31.0 | \n", "23.0 | \n", "3.0 | \n", "0.0 | \n", "1.0 | \n", "4.0 | \n", "329.0 | \n", "
| 4 | \n", "ABL2 | \n", "ABL2.17 | \n", "8 | \n", "24 | \n", "3 | \n", "CTGAGGGGAGAGGGAAAAGGACTTGTTTTCCTGTGTTCTTGTTTTC... | \n", "TGTGGTGCAGAGGTAGCCACTGTTAGCCTGGTGGGAAAATGCACAC... | \n", "TGTCATGTGTACAGGAAATCAGTGATGTGGTGCAGAGGTAGCCACT... | \n", "TTCAGCAGCTGCTGGTGTGCCCGGGACAAACCCTGTCCTTAATAAC... | \n", "179076768 | \n", "... | \n", "6.0 | \n", "12.0 | \n", "8.0 | \n", "24.0 | \n", "34.0 | \n", "2.0 | \n", "9.0 | \n", "2.0 | \n", "16.0 | \n", "485.0 | \n", "
| 5 | \n", "ABL2 | \n", "ABL2.16 | \n", "9 | \n", "24 | \n", "2 | \n", "CCACAAGGCCATTGCTGCTGTAATAAGAACTGCAAATCAGAGTGCT... | \n", "CAAGAGAAATTTTTGTTCAGGGCTGTTGGAAGTAGCTGTTAGCCTT... | \n", "GCAGAAAAGAAAGCTGGGAATGTACCAAGAGAAATTTTTGTTCAGG... | \n", "GGTACTAATGGTGATTATGCTCCAATTTACCTAATGAATTTGGTGG... | \n", "179076299 | \n", "... | \n", "0.0 | \n", "4.0 | \n", "1.0 | \n", "3.0 | \n", "9.0 | \n", "1.0 | \n", "0.0 | \n", "2.0 | \n", "1.0 | \n", "82.0 | \n", "
| 6 | \n", "ABL2 | \n", "ABL2.8 | \n", "17 | \n", "24 | \n", "0 | \n", "ACTGCTTTCTCTGTCTTCTCACAAGGTTTGCCAAGTTGTGTTCTGT... | \n", "ACTGCTAACAGTGTTAAACTTGATGTAAATAAATGAGGCCCTTGAA... | \n", "CTCTCCGTCTGTTGTCTGACTGTGAACTGCTAACAGTGTTAAACTT... | \n", "GTTCTTAATTGTTATTGTAATATATTTTCAGTTGTTTTTCTAATTT... | \n", "179068493 | \n", "... | \n", "83.0 | \n", "124.0 | \n", "132.0 | \n", "254.0 | \n", "364.0 | \n", "13.0 | \n", "61.0 | \n", "29.0 | \n", "76.0 | \n", "3961.0 | \n", "
| 7 | \n", "ACADM | \n", "ACADM.14 | \n", "14 | \n", "19 | \n", "0 | \n", "TCTATTGTACACAATCTCATTTCATATGTTTGCATTTTGGCAAAGA... | \n", "CTTGCCTTAAATTATTTTTATATGACTGTTGGTCTCTAGGTAGCCT... | \n", "CCTTATTTAAAATAAATCAATAAAGCTTGCCTTAAATTATTTTTAT... | \n", "CAAGAACTTTCTTGAAAATCTTATTTAATTCTGAGCCCATATTTCA... | \n", "76229155 | \n", "... | \n", "405.0 | \n", "1137.0 | \n", "707.0 | \n", "1187.0 | \n", "1779.0 | \n", "42.0 | \n", "184.0 | \n", "146.0 | \n", "330.0 | \n", "20840.0 | \n", "
| 8 | \n", "ACAP3 | \n", "ACAP3.3 | \n", "3 | \n", "5 | \n", "2 | \n", "CCGGCCTCCTCCGGAGGCACCTTCTCCTGGTACTCGGCCCAGAGCC... | \n", "CCACGTGGCTGGCCACGAAGGTCCCCGTGCCAGACAGCCCCAGCCG... | \n", "CTGGCTGGACGCGGGCGTCCCAAGGCCACGTGGCTGGCCACGAAGG... | \n", "CTGGCGTCGCGGGTGCTGGGCGGGAGGGGCTCTGGCCTGGGTCCTC... | \n", "1228274 | \n", "... | \n", "28.0 | \n", "108.0 | \n", "57.0 | \n", "112.0 | \n", "172.0 | \n", "8.0 | \n", "27.0 | \n", "15.0 | \n", "42.0 | \n", "2090.0 | \n", "
| 9 | \n", "ACAP3 | \n", "ACAP3.2 | \n", "4 | \n", "5 | \n", "0 | \n", "TCTTGCCCCAGGCCCCTGCTGGCGGGTCTCACCCCCCACCCCTCGC... | \n", "AAGAACAGAATTGATTCTTGCCCCTCTCCCTGTGTGAGCTTGGCCC... | \n", "CTCTTGCCTGCTGCCTGTGACCCTGAAGAACAGAATTGATTCTTGC... | \n", "TGGGGAGGCTCCCTGAGGGCACAGTGGGCGCTGGACCCGGCCCCCC... | \n", "1227789 | \n", "... | \n", "49.0 | \n", "99.0 | \n", "73.0 | \n", "160.0 | \n", "187.0 | \n", "12.0 | \n", "44.0 | \n", "22.0 | \n", "40.0 | \n", "2661.0 | \n", "
| 10 | \n", "ACBD3 | \n", "ACBD3.11 | \n", "12 | \n", "22 | \n", "0 | \n", "GTGGATGCTGAAGTTACATGAGCTACATGTTAAATATTTAAAGTCT... | \n", "AGATTCCTCAGACTCATCCAGCCCTTGGGTGCTGACCAGCAGAGTC... | \n", "AGCATTCATACTTTGGGGTTAAAGGAGATTCCTCAGACTCATCCAG... | \n", "TGATGGTTTGTGAACTCTTGCTGGGAATCAAAATTTCCTTGAGACT... | \n", "226334019 | \n", "... | \n", "12.0 | \n", "48.0 | \n", "24.0 | \n", "56.0 | \n", "75.0 | \n", "5.0 | \n", "25.0 | \n", "5.0 | \n", "40.0 | \n", "1490.0 | \n", "
| 11 | \n", "ACBD3 | \n", "ACBD3.10 | \n", "13 | \n", "22 | \n", "0 | \n", "TTTGTTTTGGCTTCATAGAGTATCTCAAATTGAAACTTTTCTGCAC... | \n", "TGGTATTCATACTACTAGTAGCAAAATACAGGTTTTTTGTTTTGTT... | \n", "AACTTTGAATCCTTGTATCTTTATTTGGTATTCATACTACTAGTAG... | \n", "TATCAAGATACGTAGAACACCTCAGAGATTTTTCTTCAGGAACTTC... | \n", "226333494 | \n", "... | \n", "14.0 | \n", "50.0 | \n", "28.0 | \n", "55.0 | \n", "84.0 | \n", "3.0 | \n", "19.0 | \n", "10.0 | \n", "23.0 | \n", "1392.0 | \n", "
| 12 | \n", "ACBD3 | \n", "ACBD3.2 | \n", "21 | \n", "22 | \n", "0 | \n", "ACAGTACAAGTGCGATTTCAAAAAGATCTTGAAAGTAATATATTTA... | \n", "AGAATATTTTTGGTTTTAAACTTTCTTATTGCCTTTGGCTGTTGAT... | \n", "GCGGTTCCTGTCATGTGTTCATGTCAGAATATTTTTGGTTTTAAAC... | \n", "CCTAAAAATATCATTGTTCTTGGGAGCAGTGTATGTTACTTTACAT... | \n", "226332399 | \n", "... | \n", "119.0 | \n", "333.0 | \n", "241.0 | \n", "579.0 | \n", "862.0 | \n", "39.0 | \n", "105.0 | \n", "63.0 | \n", "114.0 | \n", "8577.0 | \n", "
| 13 | \n", "ACBD6 | \n", "ACBD6.6 | \n", "7 | \n", "12 | \n", "0 | \n", "AACTACAAAAATAATACTTCTTTTCCACCCGTCTTTGGTATGTATT... | \n", "GACTGGAAAACTGCAGTCTGTAATAGCATAAGGCTTCCATTATGAA... | \n", "CACAACTGGCAAGGCTTAATCAAAAGACTGGAAAACTGCAGTCTGT... | \n", "CCAGAGGAGGTGACAGGCTGCAAAACAGTTTCTTTGGTGCTGCAGC... | \n", "180257391 | \n", "... | \n", "253.0 | \n", "619.0 | \n", "698.0 | \n", "1173.0 | \n", "2039.0 | \n", "65.0 | \n", "256.0 | \n", "83.0 | \n", "267.0 | \n", "20294.0 | \n", "
| 14 | \n", "ACOT7 | \n", "ACOT7.1 | \n", "18 | \n", "18 | \n", "0 | \n", "GGGAATGCTTCCGAGCACGCTGTAGGGTATGGGAAGAACCCAGCAC... | \n", "TGCTACACAGTGTTGTCCCGAGCGCCGGGAGGCGTTGGGCAGAAAC... | \n", "TTTATTTATATCATTCCAGTATCAATGCTACACAGTGTTGTCCCGA... | \n", "GTATCACAGTGTTAACCTGTACTCTCTCCTGCAAACCTACACACCA... | \n", "6324354 | \n", "... | \n", "635.0 | \n", "1524.0 | \n", "1207.0 | \n", "2112.0 | \n", "3292.0 | \n", "110.0 | \n", "542.0 | \n", "325.0 | \n", "583.0 | \n", "37630.0 | \n", "
| 15 | \n", "ACTA1 | \n", "ACTA1.1 | \n", "1 | \n", "1 | \n", "0 | \n", "TATTTTTCGAAACAAAGCCCTGTGGAAGAAAATGGAAAACTTGAAG... | \n", "GACACAGTGTTTATAACGTGTACATACATTAACTTATTACCTCATT... | \n", "ACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGT... | \n", "TGGGGGGGCGGCTGAGCTCCAGCCACCCCGCAGTCACTTTCTTTGT... | \n", "229567020 | \n", "... | \n", "26.0 | \n", "35.0 | \n", "10.0 | \n", "24.0 | \n", "38.0 | \n", "10.0 | \n", "8.0 | \n", "14.0 | \n", "7.0 | \n", "731.0 | \n", "
| 16 | \n", "ACTL8 | \n", "ACTL8.1 | \n", "1 | \n", "1 | \n", "0 | \n", "AGCCTGGGATGCCCTTGCCACCCGTGGTTGGATCTTGTTTTATATC... | \n", "ATTTCTGGTCCTACAGGCCCTTTCTGGCCAGGGAGGCATTGCTGCA... | \n", "GACTAGGGGATGGGGGACAGTTGACATTTCTGGTCCTACAGGCCCT... | \n", "AGTAGGTTTTAACTGGGGTAGCACTCCTGCTAGGAGTCCCAATTAT... | \n", "18153534 | \n", "... | \n", "3.0 | \n", "2.0 | \n", "9.0 | \n", "6.0 | \n", "11.0 | \n", "1.0 | \n", "0.0 | \n", "1.0 | \n", "2.0 | \n", "169.0 | \n", "
| 17 | \n", "ACTN2 | \n", "ACTN2.4 | \n", "4 | \n", "8 | \n", "0 | \n", "GAGCGATCTGTGATGCTGAGCTTCTGTAATCACTCATCCCATCAGA... | \n", "GTGCCTGGTGCACTGGATTACGCTGCGTTCTCTTCCGCACTCTACG... | \n", "GCCCGCCTACTCGGGCCCAGGCAGTGTGCCTGGTGCACTGGATTAC... | \n", "CTGCGTCGGGAGCTGCCCCCGGATCAGGCCCAGTACTGCATCAAGA... | \n", "236925956 | \n", "... | \n", "1.0 | \n", "10.0 | \n", "7.0 | \n", "19.0 | \n", "22.0 | \n", "0.0 | \n", "8.0 | \n", "2.0 | \n", "7.0 | \n", "380.0 | \n", "
| 18 | \n", "ACTN2 | \n", "ACTN2.5 | \n", "5 | \n", "8 | \n", "0 | \n", "TACAAAATACCCAAGATTTAAGACCGGGGGGAAAAAACCACAAATT... | \n", "TAGGAAATTAGGAGGATCTAGGGACAGAAGGAAAGTGAAAAATGTG... | \n", "TAAACAGAACAAATTACTTGAGTAATAGGAAATTAGGAGGATCTAG... | \n", "TTCTGAGTTTTTAGCAAAATGTAATGAAATATCAGGTTGATTTCTT... | \n", "236926307 | \n", "... | \n", "1.0 | \n", "14.0 | \n", "10.0 | \n", "17.0 | \n", "28.0 | \n", "0.0 | \n", "11.0 | \n", "4.0 | \n", "11.0 | \n", "390.0 | \n", "
| 19 | \n", "ADAM15 | \n", "ADAM15.6 | \n", "6 | \n", "7 | \n", "0 | \n", "GGTTGGACGGGATTGAGGAAGGTCCGCACAGCCTGTCTCTGCTCAG... | \n", "TCTGCGGACCTGCCGGCGTAGTTGCAGCGGGGGCTTGGGGAGGGGC... | \n", "ACCGCCACGCGCTGTCAAGCAACACTCTGCGGACCTGCCGGCGTAG... | \n", "CTACCATGACTGAAGGCGCCAGAGACTGGCGGTGTCTTAAGACTCC... | \n", "155035225 | \n", "... | \n", "120.0 | \n", "346.0 | \n", "311.0 | \n", "457.0 | \n", "811.0 | \n", "15.0 | \n", "43.0 | \n", "66.0 | \n", "110.0 | \n", "8455.0 | \n", "
| 20 | \n", "ADAR | \n", "ADAR.3 | \n", "8 | \n", "10 | \n", "0 | \n", "CTTTTATGTGTCCCTTGATAACAGTGACTTAACAATATACATTCCT... | \n", "CATAGACTCGGGTACTGTGATGATGGCTGCAGTCCAGTTTTATGAT... | \n", "GAGCAGAGTGAGGAAGACCCCCAAGCATAGACTCGGGTACTGTGAT... | \n", "CACATTGAAGGGACTTCGTTGGTTTTTTGGAGTCTTGGTTGTGACT... | \n", "154554567 | \n", "... | \n", "488.0 | \n", "1307.0 | \n", "919.0 | \n", "1672.0 | \n", "2662.0 | \n", "88.0 | \n", "310.0 | \n", "257.0 | \n", "442.0 | \n", "30159.0 | \n", "
| 21 | \n", "ADGRB2 | \n", "ADGRB2.2 | \n", "3 | \n", "4 | \n", "0 | \n", "CTGTCCGTCCCTGTCCCGGGCTGGGGAGGGGGGAGGGGAACTTTGT... | \n", "CTTGTTTCTCAGAGGCCCCTCAGCCACTGGAACCCCATCTTCAGCC... | \n", "TTGGCCTGGGGTCCCAGGGCCCTTCCTTGTTTCTCAGAGGCCCCTC... | \n", "GGGCAGGGAGGCGCCGTGGACTCAGCCAGGCTGGGGGAGCCGGACA... | \n", "32192737 | \n", "... | \n", "14.0 | \n", "33.0 | \n", "24.0 | \n", "54.0 | \n", "71.0 | \n", "1.0 | \n", "0.0 | \n", "9.0 | \n", "6.0 | \n", "725.0 | \n", "
| 22 | \n", "ADGRL2 | \n", "ADGRL2.17 | \n", "17 | \n", "26 | \n", "0 | \n", "ATTGCTAGGGTAAAATAAATACATTTGTGTCCAACTGAAATATAAT... | \n", "ACAATGAACTATTCTCATGAAAAATGGCTAAAGAAATTATATTTTG... | \n", "TTATTTCATATGTTTCCTCAACTGTACAATGAACTATTCTCATGAA... | \n", "AAGGCAAAGATTGAAAACATGCTTAACCACTAGCAATCAAGCCACA... | \n", "82457511 | \n", "... | \n", "12.0 | \n", "70.0 | \n", "42.0 | \n", "98.0 | \n", "135.0 | \n", "6.0 | \n", "33.0 | \n", "12.0 | \n", "24.0 | \n", "2003.0 | \n", "
| 23 | \n", "ADGRL2 | \n", "ADGRL2.21 | \n", "21 | \n", "26 | \n", "0 | \n", "ATGAGCCCATCACTAATATCCAGTGTAAAGTTTAACACGGTTTGAC... | \n", "TTCAGCAAAATTCTGCTTTTTTTTCATCCCTTTGTGTAAACCTGTT... | \n", "AAAGTTCTAATGAAATGTAAATTGTTTCAGCAAAATTCTGCTTTTT... | \n", "CTCTTCCATATTCCTTCTGCCTATATTTAGTAATTAATTTATTTTA... | \n", "82458083 | \n", "... | \n", "90.0 | \n", "166.0 | \n", "132.0 | \n", "317.0 | \n", "394.0 | \n", "17.0 | \n", "47.0 | \n", "30.0 | \n", "69.0 | \n", "4259.0 | \n", "
| 24 | \n", "ADGRL2 | \n", "ADGRL2.22 | \n", "22 | \n", "26 | \n", "2 | \n", "CCAGGACTAAAAAAAGAAGGATTGGAAGTTCTGCCATCAAATTTGG... | \n", "AAGTTTTAAGAGGGATATATTCTGAAAGCATTTTTGTTTGTTGCAT... | \n", "TACATATGCACAAAATCTGCTGGATAAGTTTTAAGAGGGATATATT... | \n", "GCCTGTTTGTTCTTTATGCTGAAAGGAATATATGTCTTCCAATTGC... | \n", "82458403 | \n", "... | \n", "1.0 | \n", "7.0 | \n", "4.0 | \n", "7.0 | \n", "7.0 | \n", "0.0 | \n", "2.0 | \n", "5.0 | \n", "1.0 | \n", "117.0 | \n", "
| 25 | \n", "ADGRL2 | \n", "ADGRL2.25 | \n", "25 | \n", "26 | \n", "0 | \n", "TTCTTCCTAGAGACATTCACTCTGTCTTTATTAAAAATAATAATAA... | \n", "TCTCTTTGTGATAGTCACAACTGTGAACTTATAAAGTCACATTTTT... | \n", "TACAGTTTTCACATTCTTGATTGTTTCTCTTTGTGATAGTCACAAC... | \n", "TGTATTTATTAACCCAGTTTCTTTGGGTCTGCCTAGACTTCACCTG... | \n", "82459593 | \n", "... | \n", "2.0 | \n", "11.0 | \n", "4.0 | \n", "23.0 | \n", "33.0 | \n", "0.0 | \n", "2.0 | \n", "3.0 | \n", "5.0 | \n", "262.0 | \n", "
| 26 | \n", "ADIPOR1 | \n", "ADIPOR1.5 | \n", "3 | \n", "7 | \n", "3 | \n", "GAGCCTTCCCACCTGCGGGGTGGAGGAGGAACTTCCCAAGTGCTTT... | \n", "GGAATTCCGTTACGGCCTAGAAGGCGGCTGTACTGATGACACCCTT... | \n", "ACTTCTATGGAGTCTCCAACCTTCAGGAATTCCGTTACGGCCTAGA... | \n", "CCAGTCTCATCAGATTTTCCATGTCCTGGTGGTGGCAGCAGCCTTT... | \n", "202910652 | \n", "... | \n", "6.0 | \n", "18.0 | \n", "22.0 | \n", "65.0 | \n", "69.0 | \n", "1.0 | \n", "13.0 | \n", "7.0 | \n", "12.0 | \n", "989.0 | \n", "
| 27 | \n", "ADIPOR1 | \n", "ADIPOR1.2 | \n", "6 | \n", "7 | \n", "0 | \n", "AAGAAACCTGCTATCATTGCTATGTATCTTGATGCAAAGACTATGA... | \n", "GTAAAATTTAAATGGGGAAAGATATTTAATATTTAATACTAAGCTT... | \n", "TTTTTTTTTTTCTTGGCAGAGTAATGTAAAATTTAAATGGGGAAAG... | \n", "CCGGCTAATCATGGAAGTGTGTCCAGGCTTCAAGTAACTTGAGTTT... | \n", "202909995 | \n", "... | \n", "575.0 | \n", "1550.0 | \n", "1115.0 | \n", "2724.0 | \n", "3575.0 | \n", "159.0 | \n", "633.0 | \n", "328.0 | \n", "784.0 | \n", "40043.0 | \n", "
| 28 | \n", "ADORA1 | \n", "ADORA1.2 | \n", "2 | \n", "2 | \n", "0 | \n", "TCTGTTGGAAATTGGGTGTGCCCTGGCTCCCAAGGGAGGCCCATGT... | \n", "ACCTTCTGAACATGAGTGTCAACTCCAGGACTTGCTTCCAAGCCCT... | \n", "GGGAGGGGAGGTGGCCGTCGAGTTGACCTTCTGAACATGAGTGTCA... | \n", "GTGTGGGAGGGCGAGGCGGGGGATCCTGGAGCCCCTGTGTCGGGGG... | \n", "203136512 | \n", "... | \n", "5.0 | \n", "8.0 | \n", "9.0 | \n", "6.0 | \n", "11.0 | \n", "1.0 | \n", "0.0 | \n", "5.0 | \n", "0.0 | \n", "136.0 | \n", "
| 29 | \n", "ADPRHL2 | \n", "ADPRHL2.3 | \n", "3 | \n", "3 | \n", "0 | \n", "CTGGCTCTTGGCTGCCATGTGGCTTATTAACAGCTTCCAGTGGAAG... | \n", "TTGTGTGGATGAAGGGACAGGCACTTGCATCCAGCTGATCTAGGTC... | \n", "CCTAGCAGGGTCCCCGAGCAGCAGGTTGTGTGGATGAAGGGACAGG... | \n", "TAGCATCATTTCTCCCTGTTGGGTTTTAGCCAGTTTGCCAGCAAGC... | \n", "36559508 | \n", "... | \n", "439.0 | \n", "1126.0 | \n", "836.0 | \n", "1981.0 | \n", "2681.0 | \n", "103.0 | \n", "475.0 | \n", "209.0 | \n", "527.0 | \n", "30706.0 | \n", "
| ... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
| 22340 | \n", "ZFX | \n", "ZFX.13 | \n", "13 | \n", "21 | \n", "4 | \n", "CTTTTGCAACTTTATGTATGTAAATGTACCCTGAATTATATATATA... | \n", "TGAGGACTGCATTTTGGAATCTCCTAGAGGTAACTCATGGCTTATA... | \n", "GTTGTGTGCTACAAATGACACTTACTGAGGACTGCATTTTGGAATC... | \n", "GCTCATGTTGTATTTTGATTATTCTGTCTGTGCGGCTTCATCTTGG... | \n", "24230364 | \n", "... | \n", "4.0 | \n", "18.0 | \n", "11.0 | \n", "27.0 | \n", "29.0 | \n", "1.0 | \n", "5.0 | \n", "5.0 | \n", "13.0 | \n", "402.0 | \n", "
| 22341 | \n", "ZFX | \n", "ZFX.15 | \n", "15 | \n", "21 | \n", "0 | \n", "AAGTTAATGCTTTTTCTCAAGGAAAAAAAATGTACAGTTTTTGTAA... | \n", "TCAGAATATTTTCCTGTTATTGAATGTTTAGTCTATTTGATACCAG... | \n", "TGAGAATAACGTGCAAAAATAAAAATCAGAATATTTTCCTGTTATT... | \n", "ATAAAAAGAAAATCATATAGGGATGTGTGACATTATTGTAATTGTG... | \n", "24232603 | \n", "... | \n", "93.0 | \n", "261.0 | \n", "161.0 | \n", "346.0 | \n", "520.0 | \n", "28.0 | \n", "78.0 | \n", "61.0 | \n", "112.0 | \n", "5657.0 | \n", "
| 22342 | \n", "ZFX | \n", "ZFX.17 | \n", "17 | \n", "21 | \n", "0 | \n", "TGGATTTGTTATATATTGTTCCTGTTATTTTTGACATCTTTGCTAT... | \n", "TTTCATCTTTTGTTTCGTGTATATACTGTTTGCCTTTTTCATAAAA... | \n", "AATTAAGTTTACCCTATGGATTTTGTTTCATCTTTTGTTTCGTGTA... | \n", "AATAAATCATAACCATTTTGCCACATTCTGTAACTGTTTAGCTAAG... | \n", "24234179 | \n", "... | \n", "54.0 | \n", "99.0 | \n", "72.0 | \n", "130.0 | \n", "226.0 | \n", "9.0 | \n", "12.0 | \n", "18.0 | \n", "21.0 | \n", "2096.0 | \n", "
| 22343 | \n", "ZFX | \n", "ZFX.19 | \n", "19 | \n", "21 | \n", "2 | \n", "TTTTTGTAGTCCATGATTTATCTTGTTATTGCTTATGTAATCTTTT... | \n", "GAGTTCTTTGTACATTAAGCCTATTAACTTTCCAATACATTTGCTG... | \n", "AATCCTGTGCCCCATTTTCTATTTGGAGTTCTTTGTACATTAAGCC... | \n", "TATGTATATAATAGCACTTTAAGTTGTCGCTCTGATAAACTGCCTA... | \n", "24235904 | \n", "... | \n", "6.0 | \n", "16.0 | \n", "10.0 | \n", "15.0 | \n", "18.0 | \n", "1.0 | \n", "3.0 | \n", "4.0 | \n", "4.0 | \n", "344.0 | \n", "
| 22344 | \n", "ZIC3 | \n", "ZIC3.13 | \n", "13 | \n", "13 | \n", "0 | \n", "TTGTGTTCAGAAAGCAATACCCAGGATCCCTTTAATTTTTGTTTGA... | \n", "TAAAGTGTTTAAAACTAGAAACATGAATTGTTGTTTTGTTAATTTT... | \n", "AATACCAGCATTCTATATGTAGAACTAAAGTGTTTAAAACTAGAAA... | \n", "AGTATGCATTATCTCATGCATTGTGTTGACCTTGGTGAAAATCTTT... | \n", "136659831 | \n", "... | \n", "4.0 | \n", "3.0 | \n", "3.0 | \n", "6.0 | \n", "8.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "121.0 | \n", "
| 22345 | \n", "ZMYM3 | \n", "ZMYM3.1 | \n", "3 | \n", "3 | \n", "0 | \n", "GAGAAGCTGTTGTCACGACTAACCTTCTGTCTCTGAAATTGTTTGT... | \n", "GGCGCCTGGCCTGTCCCTTCAGTGAGCCATGCCCACCCTTGTGTTG... | \n", "GTTTAAATTGTATATATTGTTCTGAGGCGCCTGGCCTGTCCCTTCA... | \n", "GTTTCCCAGGCTCCTTTTTGTGTTTTTATAACTGTCACCAGTTAGC... | \n", "70459493 | \n", "... | \n", "116.0 | \n", "337.0 | \n", "252.0 | \n", "475.0 | \n", "696.0 | \n", "20.0 | \n", "138.0 | \n", "65.0 | \n", "120.0 | \n", "8211.0 | \n", "
| 22346 | \n", "ZNF157 | \n", "ZNF157.5 | \n", "5 | \n", "6 | \n", "2 | \n", "CCTTGTTGATAAGTATAGGTCTGGCTAGTCATTTATCTCTCCATTC... | \n", "AAGTTCTGCAGCTTGCTTTTTTCATGTAATGTTACCTTTCCAAGAT... | \n", "CATAAATGGGCTCACACTGTATTTAAAGTTCTGCAGCTTGCTTTTT... | \n", "TAGCATGAAGTGTGCAATACATACTACTATATTGTCTTTATATAAT... | \n", "47274001 | \n", "... | \n", "1.0 | \n", "1.0 | \n", "3.0 | \n", "5.0 | \n", "9.0 | \n", "0.0 | \n", "2.0 | \n", "0.0 | \n", "1.0 | \n", "86.0 | \n", "
| 22347 | \n", "ZNF182 | \n", "ZNF182.2 | \n", "1 | \n", "2 | \n", "0 | \n", "GAAATAATATGGTAGATAATTTAGACTTATTTAGTAGAAGTTCTGC... | \n", "TACAAACCTTGTTGCTTCAATACAAAGACCCGATAAACACGAATCA... | \n", "AGTTTGGAAACATACTTCATCTGAGTACAAACCTTGTTGCTTCAAT... | \n", "ATTTTCTGACAAGAAAACAATTATCACCAAGAGTGCTCGTGACTGT... | \n", "47836945 | \n", "... | \n", "3.0 | \n", "8.0 | \n", "8.0 | \n", "25.0 | \n", "32.0 | \n", "0.0 | \n", "8.0 | \n", "5.0 | \n", "5.0 | \n", "380.0 | \n", "
| 22348 | \n", "ZNF182 | \n", "ZNF182.1 | \n", "2 | \n", "2 | \n", "0 | \n", "TTGAAAATGTGGGTGTACTATGTACTATGTGGATGTACTACCTTTT... | \n", "GGCTGGGGGGATGGAATTGAGAGGGAGACAACTGTATCCTTTCATA... | \n", "CCTTGGGAGGGGAAGGGGCAGTGGTGGCTGGGGGGATGGAATTGAG... | \n", "TTCATAAGTTATCTCTGGAAAGAGACATGAGAACCTGGTAACCCTG... | \n", "47834270 | \n", "... | \n", "20.0 | \n", "40.0 | \n", "42.0 | \n", "87.0 | \n", "96.0 | \n", "7.0 | \n", "14.0 | \n", "14.0 | \n", "38.0 | \n", "1251.0 | \n", "
| 22349 | \n", "ZNF185 | \n", "ZNF185.5 | \n", "5 | \n", "6 | \n", "0 | \n", "TTGCTTAGTGTTTCTAATCATACTTAATCCACACTAATGTGCGCAA... | \n", "TTTTGCAGATCTGAGGAAGAGGGATGCATTACCTTTTTGCTTCTTT... | \n", "CTCTCATGTCTAAAAAGGCACAGAATTTTGCAGATCTGAGGAAGAG... | \n", "TTGAAAGAAATCTTGCAAGAGCCATTATTGACTTAGATCCAAAACA... | \n", "152141997 | \n", "... | \n", "10.0 | \n", "27.0 | \n", "16.0 | \n", "56.0 | \n", "63.0 | \n", "4.0 | \n", "5.0 | \n", "7.0 | \n", "18.0 | \n", "576.0 | \n", "
| 22350 | \n", "ZNF275 | \n", "ZNF275.4 | \n", "4 | \n", "6 | \n", "2 | \n", "ATTTTATGTCTACGTATATTGTTCCTTTACTGAACCCACCACATGC... | \n", "TAAGATGGGTGAAAGTCGATGCCTTCTAGTCTCAGTGAATTTAACC... | \n", "GTTCAAACGTGTGTTCTCTGTTCTCTAAGATGGGTGAAAGTCGATG... | \n", "TGCCACTTGGCTGCTTCCTGGCCAAGTCGCACCTGACTGCATGAAC... | \n", "152617885 | \n", "... | \n", "3.0 | \n", "3.0 | \n", "5.0 | \n", "17.0 | \n", "26.0 | \n", "1.0 | \n", "3.0 | \n", "4.0 | \n", "3.0 | \n", "291.0 | \n", "
| 22351 | \n", "ZNF275 | \n", "ZNF275.6 | \n", "6 | \n", "6 | \n", "0 | \n", "GTCTGATCCCCTACCAAATCTAGCACAGTGCCTTGCATCAAGTAGA... | \n", "CCCCCACCCATTAAATTGTGAGCTCTTAGAAGACAGGGGTGGCCTT... | \n", "GCTTCACCCCCTCCTCCTCAGCCCTCCCCCACCCATTAAATTGTGA... | \n", "TTCTGGCACTCACTATAATCAGCCTTGCACTAGAGCTGTTTGTGGA... | \n", "152618362 | \n", "... | \n", "55.0 | \n", "164.0 | \n", "90.0 | \n", "240.0 | \n", "268.0 | \n", "10.0 | \n", "31.0 | \n", "13.0 | \n", "66.0 | \n", "3151.0 | \n", "
| 22352 | \n", "ZNF280C | \n", "ZNF280C.3 | \n", "4 | \n", "6 | \n", "0 | \n", "TTGGTTACATTGAATACAGATTTGCTGAACAGTTTTGATGTTATTT... | \n", "GCTCATATATATATAGATGTATATTTTTTTTAATTTCTTGTTTGTT... | \n", "GGACCAAAAAATGCACTTGTTTCTTGCTCATATATATATAGATGTA... | \n", "GCCATTAATGTAATTCCTCTGGATAAAGATAATATATTCAAAAAAT... | \n", "129336743 | \n", "... | \n", "44.0 | \n", "69.0 | \n", "72.0 | \n", "82.0 | \n", "155.0 | \n", "14.0 | \n", "18.0 | \n", "15.0 | \n", "49.0 | \n", "2016.0 | \n", "
| 22353 | \n", "ZNF280C | \n", "ZNF280C.1 | \n", "6 | \n", "6 | \n", "0 | \n", "TGATTCAGAAATAGCCATGTCATGCATGTGTCCTTTTTTGTTTTCA... | \n", "AGCTTGACAATCTGATCCCTCTTCACCTTCAGACTGTTAGTTATTT... | \n", "GTTTTAATAGGTGTTAGTGAGTTTTAGCTTGACAATCTGATCCCTC... | \n", "TAAAACTATTTATGCAGTCAGTACTAAGCTTACTTGTTATAAGCAG... | \n", "129335349 | \n", "... | \n", "5.0 | \n", "19.0 | \n", "11.0 | \n", "10.0 | \n", "21.0 | \n", "0.0 | \n", "1.0 | \n", "3.0 | \n", "3.0 | \n", "290.0 | \n", "
| 22354 | \n", "ZNF41 | \n", "ZNF41.16 | \n", "7 | \n", "22 | \n", "2 | \n", "CCTAGCTCTAGGCTATGTTACAGAAATATAGTCATTGAATGATACA... | \n", "AATGGAATTTTTAAATTTAAAGATATAACTTTATGAATTGAGAAAT... | \n", "CTCATGGTATATATATTTTAAGTGCAATGGAATTTTTAAATTTAAA... | \n", "ACATAGAAAAGATTTCCATGAAAAACTTTTTTCTTTTCCCTTGGGA... | \n", "47306101 | \n", "... | \n", "6.0 | \n", "19.0 | \n", "9.0 | \n", "22.0 | \n", "26.0 | \n", "0.0 | \n", "1.0 | \n", "3.0 | \n", "15.0 | \n", "331.0 | \n", "
| 22355 | \n", "ZNF41 | \n", "ZNF41.12 | \n", "11 | \n", "22 | \n", "3 | \n", "GATAATTCATTTTCATTGTCATGTTGTATCCCATTCTGTGAATATG... | \n", "TCATTCACATTATGTATGTGAGAGTCATCCATATGTTGCATATAGT... | \n", "TATACTCTTTAGCATCTGTCTTCTGTCATTCACATTATGTATGTGA... | \n", "TTTTGTATTTTATATAAATTGAGTCAATTATATATCATATAATTGA... | \n", "47305154 | \n", "... | \n", "1.0 | \n", "0.0 | \n", "4.0 | \n", "12.0 | \n", "5.0 | \n", "0.0 | \n", "0.0 | \n", "0.0 | \n", "1.0 | \n", "68.0 | \n", "
| 22356 | \n", "ZNF41 | \n", "ZNF41.2 | \n", "21 | \n", "22 | \n", "4 | \n", "TTTAAGTTTTACATCTAGATCTAGCATGTATTTTGAGTTATATGGT... | \n", "TTGCCTAACCAAAGATTACAATGATTTTTTCCTGTGTTTTCTTCTA... | \n", "TTTGAGTGCTGTATCTAAGAAATCCTTGCCTAACCAAAGATTACAA... | \n", "CTTATTTTGATGAAGTCCGTTCTTTCCATTTGTTCATTTCTGGGTT... | \n", "47304199 | \n", "... | \n", "13.0 | \n", "20.0 | \n", "19.0 | \n", "29.0 | \n", "46.0 | \n", "0.0 | \n", "4.0 | \n", "0.0 | \n", "10.0 | \n", "499.0 | \n", "
| 22357 | \n", "ZNF449 | \n", "ZNF449.3 | \n", "3 | \n", "11 | \n", "0 | \n", "TCTATCAGACGTATTGATTATAGCAGTACTATAGTTATTCTGCTGT... | \n", "AAATTATGACAATCCTTTTAGAGGTAGGGTCAATATAGTGGATAAA... | \n", "TCATAGGTGTAAACATAAAGCATATAAATTATGACAATCCTTTTAG... | \n", "TCTTCTTTTTTTAATTACAATGAAAAATTTTGTGTTCCAAGGCAAC... | \n", "134495399 | \n", "... | \n", "3.0 | \n", "4.0 | \n", "3.0 | \n", "8.0 | \n", "17.0 | \n", "2.0 | \n", "5.0 | \n", "1.0 | \n", "4.0 | \n", "192.0 | \n", "
| 22358 | \n", "ZNF449 | \n", "ZNF449.6 | \n", "6 | \n", "11 | \n", "0 | \n", "AGTGCCTTAGAATGGATGTGCCCAACTGCTCTGTATTTATGCAATA... | \n", "ATGTAATGGCTTCTCTTTTCTCTCTTGTGGAATTGCATTCAAACCA... | \n", "TGAATGTAGAGATGAAAAATACAGAATGTAATGGCTTCTCTTTTCT... | \n", "GGCTCAAATTGATATCCCAGTAGCAATAAACATATAATATAGGAGG... | \n", "134497046 | \n", "... | \n", "10.0 | \n", "24.0 | \n", "26.0 | \n", "48.0 | \n", "51.0 | \n", "4.0 | \n", "8.0 | \n", "5.0 | \n", "4.0 | \n", "571.0 | \n", "
| 22359 | \n", "ZNF449 | \n", "ZNF449.8 | \n", "8 | \n", "11 | \n", "0 | \n", "AAGATTAAATGAAATATATTTTGCTCTGGCCCTACACACTGTAAGC... | \n", "CCTAGCTATTATAAAGGGGAAATTACAGTACCTACCTCAAAAGTAC... | \n", "TAAGGGCAAAATACAGTACCTACCTCCTAGCTATTATAAAGGGGAA... | \n", "GGATAATTATACTTCTATGTCTAATTGTACTTCTGAGCATTTCAAA... | \n", "134497629 | \n", "... | \n", "2.0 | \n", "6.0 | \n", "2.0 | \n", "10.0 | \n", "10.0 | \n", "0.0 | \n", "0.0 | \n", "3.0 | \n", "7.0 | \n", "171.0 | \n", "
| 22360 | \n", "ZNF630 | \n", "ZNF630.4 | \n", "2 | \n", "5 | \n", "0 | \n", "AATATGGAATCAATTTGCTCACCCTCAAACTGTCTCAGCCCTCTTC... | \n", "CCTTCCACAGAATGATCTGCTTAGGCCCTCAGAATATTTTCAACCC... | \n", "TATGTTCCTCAGTATACATGATTACCCTTCCACAGAATGATCTGCT... | \n", "CTCACATTGAATAGAAATAGTGACAACTTCTCAACTGTAGAATAGA... | \n", "47917631 | \n", "... | \n", "3.0 | \n", "7.0 | \n", "3.0 | \n", "7.0 | \n", "22.0 | \n", "2.0 | \n", "4.0 | \n", "3.0 | \n", "3.0 | \n", "241.0 | \n", "
| 22361 | \n", "ZNF674 | \n", "ZNF674.1 | \n", "6 | \n", "6 | \n", "0 | \n", "GGATTATTGATGTGTAAAAATTTTTTTGATTGTAGTCTCCAGAAAT... | \n", "CTAGGAAAGAAATACACCAAATTATTAAGTAAATTGGCATTTGAAT... | \n", "ATCTGTGTAGTGTGGAGGGAAAAAGCTAGGAAAGAAATACACCAAA... | \n", "TAGGTGAGTGTGTGTGTATAGATAAACACATGGAACAAAAAGTTAG... | \n", "46357184 | \n", "... | \n", "9.0 | \n", "34.0 | \n", "12.0 | \n", "46.0 | \n", "58.0 | \n", "1.0 | \n", "7.0 | \n", "4.0 | \n", "17.0 | \n", "654.0 | \n", "
| 22362 | \n", "ZNF711 | \n", "ZNF711.8 | \n", "8 | \n", "11 | \n", "0 | \n", "TGTTATGTGGGATTATTATTTCTAAATGTTACTCATTGAAATGAGC... | \n", "TGTGTTATGTGGCTGTAAATGATGTACACGCTGTAAAATAAGATCG... | \n", "AAATTTGGAATATCTACTAAAATTGTGTGTTATGTGGCTGTAAATG... | \n", "AATCAGTTCCTTGAGAATAAATTTTTTATCTTTCTTAACTTCAGAA... | \n", "84528343 | \n", "... | \n", "52.0 | \n", "157.0 | \n", "142.0 | \n", "439.0 | \n", "491.0 | \n", "11.0 | \n", "68.0 | \n", "33.0 | \n", "92.0 | \n", "4818.0 | \n", "
| 22363 | \n", "ZNF81 | \n", "ZNF81.11 | \n", "11 | \n", "15 | \n", "0 | \n", "TTTATTGCATTTCTTCCTCCACTATTCTTCTCTAACAGATGACCAA... | \n", "TTGGGCAGCATGATAACAACCCAGCAAAAAGCTAACTGATACATTG... | \n", "GTTAACTGTTTTAAGTCACTAAGTTTTGGGCAGCATGATAACAACC... | \n", "GCCATCCATCCCAGCCATCCCAAACAACTACCAGAATAATGGATTA... | \n", "47781589 | \n", "... | \n", "1.0 | \n", "9.0 | \n", "5.0 | \n", "14.0 | \n", "12.0 | \n", "1.0 | \n", "4.0 | \n", "1.0 | \n", "6.0 | \n", "168.0 | \n", "
| 22364 | \n", "ZNF81 | \n", "ZNF81.14 | \n", "14 | \n", "15 | \n", "0 | \n", "TCCATTCATGTTTTGATGGAAATTTGTATTTCCAGCTTTTGGCTAT... | \n", "TTTTATTGCTAAGTGTTATTTCATTATATGGACATACCAGAATTTG... | \n", "GTTATATGCGTCTATGTTCATTCCTTTTTATTGCTAAGTGTTATTT... | \n", "TTGTTTGGCTCCTTCCATCCAGCATAATAAGTTTGAGATTCATTCA... | \n", "47784996 | \n", "... | \n", "16.0 | \n", "45.0 | \n", "31.0 | \n", "78.0 | \n", "83.0 | \n", "4.0 | \n", "11.0 | \n", "7.0 | \n", "16.0 | \n", "1011.0 | \n", "
| 22365 | \n", "ZRSR2 | \n", "ZRSR2.3 | \n", "3 | \n", "4 | \n", "0 | \n", "CAGGAGGAGGTCGGGTAATAGAGACAGAACTGTTCAGAGTCCCAAA... | \n", "AGGAGCCGCCGCAGCCGGAGCCAAAGTTCCTCTAGGTCCCGAAGTC... | \n", "GAGCCGGAGCCGGAGCCGGAGCCGCAGGAGCCGCCGCAGCCGGAGC... | \n", "GGAAGAAATAGGGACCGCAGCAGGGACCGCAGCCGGGGCCGGGGCA... | \n", "15841360 | \n", "... | \n", "52.0 | \n", "142.0 | \n", "105.0 | \n", "210.0 | \n", "329.0 | \n", "26.0 | \n", "78.0 | \n", "20.0 | \n", "65.0 | \n", "3824.0 | \n", "
| 22366 | \n", "ZXDA | \n", "ZXDA.13 | \n", "1 | \n", "13 | \n", "2 | \n", "TGTGACCCTCAGCAAGTCACTTAACCTATCTGAGCCTTAATTTCCT... | \n", "ATGAGTTTGGAGATCTAAATTCTGATCTTGAGTCTGGAACTGACAA... | \n", "TGCAAAAAGAGCACAGCCCTGGACTATGAGTTTGGAGATCTAAATT... | \n", "TTGAGGATATTCTGGACTAAATATTTAAGTGCAGTCATTTCTTTTT... | \n", "57934228 | \n", "... | \n", "4.0 | \n", "13.0 | \n", "9.0 | \n", "17.0 | \n", "13.0 | \n", "0.0 | \n", "0.0 | \n", "0.0 | \n", "7.0 | \n", "325.0 | \n", "
| 22367 | \n", "ZXDA | \n", "ZXDA.5 | \n", "9 | \n", "13 | \n", "0 | \n", "TTGTTTATCTTCAGTCCTTGATTTATTAACATTTTGCCAATTGAAA... | \n", "CCTTTTTGTTTAAACAATGGAACATGATTTAATTTTATCTCATTTG... | \n", "TTCTGTTAGTGTTGGCATAAGCTTGCCTTTTTGTTTAAACAATGGA... | \n", "GACATGGCATGTAATTACAGACAGAAGTGTGACTGTAAACATATTA... | \n", "57931885 | \n", "... | \n", "13.0 | \n", "15.0 | \n", "12.0 | \n", "32.0 | \n", "45.0 | \n", "0.0 | \n", "1.0 | \n", "9.0 | \n", "12.0 | \n", "495.0 | \n", "
| 22368 | \n", "ZXDB | \n", "ZXDB.2 | \n", "2 | \n", "6 | \n", "3 | \n", "TGGTTTGAATAGATTGCTTTTAAGGTCTTTCTGCTCTGTGATTCCT... | \n", "CAAGTCAGTTAACCTATCTGAGCCTTAATTTCCTTATTTATAAATT... | \n", "AACTGACAAGTTGTGTGACCCTGAGCAAGTCAGTTAACCTATCTGA... | \n", "ACAGCCCTGGACTACAAGTTTGGAGATTTAAATTCTGATCTTGAGT... | \n", "57621181 | \n", "... | \n", "1.0 | \n", "4.0 | \n", "7.0 | \n", "9.0 | \n", "10.0 | \n", "1.0 | \n", "2.0 | \n", "3.0 | \n", "7.0 | \n", "242.0 | \n", "
| 22369 | \n", "ZXDB | \n", "ZXDB.5 | \n", "5 | \n", "6 | \n", "0 | \n", "GCAGATGAGTATGTCAAGGATTGAGATGAACACATAAGTCTTGGAA... | \n", "TGTTGTCATTCATTAAGGCCTCTTAAATAGACCACTATTTTTTGTG... | \n", "GTACTCATATAGCATATTTCAAAAATGTTGTCATTCATTAAGGCCT... | \n", "TTGATTGTCTACCCAATCAACAGTTTTCCCTCTTTGCTCTGGAAAT... | \n", "57623885 | \n", "... | \n", "28.0 | \n", "75.0 | \n", "67.0 | \n", "132.0 | \n", "211.0 | \n", "10.0 | \n", "13.0 | \n", "18.0 | \n", "38.0 | \n", "2088.0 | \n", "
22370 rows × 46 columns
\n", "| \n", " | gene | \n", "gene_id | \n", "sitenum | \n", "num_sites | \n", "pas | \n", "seq | \n", "seq_ext | \n", "wide_seq | \n", "wide_seq_ext | \n", "pas_pos | \n", "... | \n", "THOC5 | \n", "total_count | \n", "sitenum_pas_4 | \n", "sitenum_pas_3 | \n", "sitenum_pas_2 | \n", "sitenum_pas_1 | \n", "num_sites_pas_4 | \n", "num_sites_pas_3 | \n", "num_sites_pas_2 | \n", "num_sites_pas_1 | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "ABCB10 | \n", "ABCB10.6 | \n", "2 | \n", "7 | \n", "0 | \n", "GTTAAAGATTGAAGCTATTGTCAAATGACAACTTTAAAAAGGCAAT... | \n", "TGGAATATTTTAATTAATATAGCATGGCACCTCATTTTCTTTTGCC... | \n", "TCAGGTTTTGTATTTTCTTTTCTTGTGGAATATTTTAATTAATATA... | \n", "GAGTTTTAATAATTGTAACTTTTTAAATGTCTATAGCACTGAAGTT... | \n", "229653571 | \n", "... | \n", "17.0 | \n", "576.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 1 | \n", "ABCB10 | \n", "ABCB10.3 | \n", "5 | \n", "7 | \n", "0 | \n", "TCTGATACATGATGTTCAATTTTATCTTTAGGTAATATTTTATATC... | \n", "TGTGCCATAGAAGTATTTACGAAATTGCATTTCATTGTTATGTTTT... | \n", "GGTTGAATCTGAGGAAAATAATCCTTGTGCCATAGAAGTATTTACG... | \n", "TGTGTTCTTTATAAAGTGTGATTTTCAGAAAGCAAACAACACAATT... | \n", "229652351 | \n", "... | \n", "125.0 | \n", "8657.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 2 | \n", "ABCD3 | \n", "ABCD3.14 | \n", "14 | \n", "15 | \n", "0 | \n", "GCCTTGACTTGAAAACATAGATAGTTTAATCTTGACTTGAAAAACA... | \n", "TGTTCTTTTTATTCTGGTATCTAAATACTGAGAAGTTCATTTATAA... | \n", "TCAGATATCCTATACAACCTTTGCTTGTTCTTTTTATTCTGGTATC... | \n", "CGAACTTGTATACTTATTTTCTGTTCAGATTAAAAAAAAAAAAAAA... | \n", "94984196 | \n", "... | \n", "133.0 | \n", "11240.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 3 | \n", "ABCD3 | \n", "ABCD3.15 | \n", "15 | \n", "15 | \n", "0 | \n", "ATGAGAAAATAAGTATGAAACAGCAATGGTAGTTTGTTTTGCATTA... | \n", "TGCCAAGACATATCACCGTGTTCTCATAATAAGTTTTTACTTTTTA... | \n", "TTTCATCCATGAGCACCACGCTGCATGCCAAGACATATCACCGTGT... | \n", "GCAGTGGGAAATGGTAGTTTAATCCGAAGAATAAACCAAAGAATAA... | \n", "94984889 | \n", "... | \n", "4.0 | \n", "329.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 4 | \n", "ABL2 | \n", "ABL2.17 | \n", "8 | \n", "24 | \n", "3 | \n", "CTGAGGGGAGAGGGAAAAGGACTTGTTTTCCTGTGTTCTTGTTTTC... | \n", "TGTGGTGCAGAGGTAGCCACTGTTAGCCTGGTGGGAAAATGCACAC... | \n", "TGTCATGTGTACAGGAAATCAGTGATGTGGTGCAGAGGTAGCCACT... | \n", "TTCAGCAGCTGCTGGTGTGCCCGGGACAAACCCTGTCCTTAATAAC... | \n", "179076768 | \n", "... | \n", "16.0 | \n", "485.0 | \n", "1 | \n", "1 | \n", "-1 | \n", "-1 | \n", "3 | \n", "3 | \n", "2 | \n", "1 | \n", "
| 5 | \n", "ABL2 | \n", "ABL2.16 | \n", "9 | \n", "24 | \n", "2 | \n", "CCACAAGGCCATTGCTGCTGTAATAAGAACTGCAAATCAGAGTGCT... | \n", "CAAGAGAAATTTTTGTTCAGGGCTGTTGGAAGTAGCTGTTAGCCTT... | \n", "GCAGAAAAGAAAGCTGGGAATGTACCAAGAGAAATTTTTGTTCAGG... | \n", "GGTACTAATGGTGATTATGCTCCAATTTACCTAATGAATTTGGTGG... | \n", "179076299 | \n", "... | \n", "1.0 | \n", "82.0 | \n", "2 | \n", "2 | \n", "1 | \n", "-1 | \n", "3 | \n", "3 | \n", "2 | \n", "1 | \n", "
| 6 | \n", "ABL2 | \n", "ABL2.8 | \n", "17 | \n", "24 | \n", "0 | \n", "ACTGCTTTCTCTGTCTTCTCACAAGGTTTGCCAAGTTGTGTTCTGT... | \n", "ACTGCTAACAGTGTTAAACTTGATGTAAATAAATGAGGCCCTTGAA... | \n", "CTCTCCGTCTGTTGTCTGACTGTGAACTGCTAACAGTGTTAAACTT... | \n", "GTTCTTAATTGTTATTGTAATATATTTTCAGTTGTTTTTCTAATTT... | \n", "179068493 | \n", "... | \n", "76.0 | \n", "3961.0 | \n", "3 | \n", "3 | \n", "2 | \n", "1 | \n", "3 | \n", "3 | \n", "2 | \n", "1 | \n", "
| 7 | \n", "ACADM | \n", "ACADM.14 | \n", "14 | \n", "19 | \n", "0 | \n", "TCTATTGTACACAATCTCATTTCATATGTTTGCATTTTGGCAAAGA... | \n", "CTTGCCTTAAATTATTTTTATATGACTGTTGGTCTCTAGGTAGCCT... | \n", "CCTTATTTAAAATAAATCAATAAAGCTTGCCTTAAATTATTTTTAT... | \n", "CAAGAACTTTCTTGAAAATCTTATTTAATTCTGAGCCCATATTTCA... | \n", "76229155 | \n", "... | \n", "330.0 | \n", "20840.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 8 | \n", "ACAP3 | \n", "ACAP3.3 | \n", "3 | \n", "5 | \n", "2 | \n", "CCGGCCTCCTCCGGAGGCACCTTCTCCTGGTACTCGGCCCAGAGCC... | \n", "CCACGTGGCTGGCCACGAAGGTCCCCGTGCCAGACAGCCCCAGCCG... | \n", "CTGGCTGGACGCGGGCGTCCCAAGGCCACGTGGCTGGCCACGAAGG... | \n", "CTGGCGTCGCGGGTGCTGGGCGGGAGGGGCTCTGGCCTGGGTCCTC... | \n", "1228274 | \n", "... | \n", "42.0 | \n", "2090.0 | \n", "1 | \n", "1 | \n", "1 | \n", "-1 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "
| 9 | \n", "ACAP3 | \n", "ACAP3.2 | \n", "4 | \n", "5 | \n", "0 | \n", "TCTTGCCCCAGGCCCCTGCTGGCGGGTCTCACCCCCCACCCCTCGC... | \n", "AAGAACAGAATTGATTCTTGCCCCTCTCCCTGTGTGAGCTTGGCCC... | \n", "CTCTTGCCTGCTGCCTGTGACCCTGAAGAACAGAATTGATTCTTGC... | \n", "TGGGGAGGCTCCCTGAGGGCACAGTGGGCGCTGGACCCGGCCCCCC... | \n", "1227789 | \n", "... | \n", "40.0 | \n", "2661.0 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "
| 10 | \n", "ACBD3 | \n", "ACBD3.11 | \n", "12 | \n", "22 | \n", "0 | \n", "GTGGATGCTGAAGTTACATGAGCTACATGTTAAATATTTAAAGTCT... | \n", "AGATTCCTCAGACTCATCCAGCCCTTGGGTGCTGACCAGCAGAGTC... | \n", "AGCATTCATACTTTGGGGTTAAAGGAGATTCCTCAGACTCATCCAG... | \n", "TGATGGTTTGTGAACTCTTGCTGGGAATCAAAATTTCCTTGAGACT... | \n", "226334019 | \n", "... | \n", "40.0 | \n", "1490.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "
| 11 | \n", "ACBD3 | \n", "ACBD3.10 | \n", "13 | \n", "22 | \n", "0 | \n", "TTTGTTTTGGCTTCATAGAGTATCTCAAATTGAAACTTTTCTGCAC... | \n", "TGGTATTCATACTACTAGTAGCAAAATACAGGTTTTTTGTTTTGTT... | \n", "AACTTTGAATCCTTGTATCTTTATTTGGTATTCATACTACTAGTAG... | \n", "TATCAAGATACGTAGAACACCTCAGAGATTTTTCTTCAGGAACTTC... | \n", "226333494 | \n", "... | \n", "23.0 | \n", "1392.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "
| 12 | \n", "ACBD3 | \n", "ACBD3.2 | \n", "21 | \n", "22 | \n", "0 | \n", "ACAGTACAAGTGCGATTTCAAAAAGATCTTGAAAGTAATATATTTA... | \n", "AGAATATTTTTGGTTTTAAACTTTCTTATTGCCTTTGGCTGTTGAT... | \n", "GCGGTTCCTGTCATGTGTTCATGTCAGAATATTTTTGGTTTTAAAC... | \n", "CCTAAAAATATCATTGTTCTTGGGAGCAGTGTATGTTACTTTACAT... | \n", "226332399 | \n", "... | \n", "114.0 | \n", "8577.0 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "
| 13 | \n", "ACBD6 | \n", "ACBD6.6 | \n", "7 | \n", "12 | \n", "0 | \n", "AACTACAAAAATAATACTTCTTTTCCACCCGTCTTTGGTATGTATT... | \n", "GACTGGAAAACTGCAGTCTGTAATAGCATAAGGCTTCCATTATGAA... | \n", "CACAACTGGCAAGGCTTAATCAAAAGACTGGAAAACTGCAGTCTGT... | \n", "CCAGAGGAGGTGACAGGCTGCAAAACAGTTTCTTTGGTGCTGCAGC... | \n", "180257391 | \n", "... | \n", "267.0 | \n", "20294.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 14 | \n", "ACOT7 | \n", "ACOT7.1 | \n", "18 | \n", "18 | \n", "0 | \n", "GGGAATGCTTCCGAGCACGCTGTAGGGTATGGGAAGAACCCAGCAC... | \n", "TGCTACACAGTGTTGTCCCGAGCGCCGGGAGGCGTTGGGCAGAAAC... | \n", "TTTATTTATATCATTCCAGTATCAATGCTACACAGTGTTGTCCCGA... | \n", "GTATCACAGTGTTAACCTGTACTCTCTCCTGCAAACCTACACACCA... | \n", "6324354 | \n", "... | \n", "583.0 | \n", "37630.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 15 | \n", "ACTA1 | \n", "ACTA1.1 | \n", "1 | \n", "1 | \n", "0 | \n", "TATTTTTCGAAACAAAGCCCTGTGGAAGAAAATGGAAAACTTGAAG... | \n", "GACACAGTGTTTATAACGTGTACATACATTAACTTATTACCTCATT... | \n", "ACTTCCGTTGCTGCCATCGTAAACTGACACAGTGTTTATAACGTGT... | \n", "TGGGGGGGCGGCTGAGCTCCAGCCACCCCGCAGTCACTTTCTTTGT... | \n", "229567020 | \n", "... | \n", "7.0 | \n", "731.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 16 | \n", "ACTL8 | \n", "ACTL8.1 | \n", "1 | \n", "1 | \n", "0 | \n", "AGCCTGGGATGCCCTTGCCACCCGTGGTTGGATCTTGTTTTATATC... | \n", "ATTTCTGGTCCTACAGGCCCTTTCTGGCCAGGGAGGCATTGCTGCA... | \n", "GACTAGGGGATGGGGGACAGTTGACATTTCTGGTCCTACAGGCCCT... | \n", "AGTAGGTTTTAACTGGGGTAGCACTCCTGCTAGGAGTCCCAATTAT... | \n", "18153534 | \n", "... | \n", "2.0 | \n", "169.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 17 | \n", "ACTN2 | \n", "ACTN2.4 | \n", "4 | \n", "8 | \n", "0 | \n", "GAGCGATCTGTGATGCTGAGCTTCTGTAATCACTCATCCCATCAGA... | \n", "GTGCCTGGTGCACTGGATTACGCTGCGTTCTCTTCCGCACTCTACG... | \n", "GCCCGCCTACTCGGGCCCAGGCAGTGTGCCTGGTGCACTGGATTAC... | \n", "CTGCGTCGGGAGCTGCCCCCGGATCAGGCCCAGTACTGCATCAAGA... | \n", "236925956 | \n", "... | \n", "7.0 | \n", "380.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 18 | \n", "ACTN2 | \n", "ACTN2.5 | \n", "5 | \n", "8 | \n", "0 | \n", "TACAAAATACCCAAGATTTAAGACCGGGGGGAAAAAACCACAAATT... | \n", "TAGGAAATTAGGAGGATCTAGGGACAGAAGGAAAGTGAAAAATGTG... | \n", "TAAACAGAACAAATTACTTGAGTAATAGGAAATTAGGAGGATCTAG... | \n", "TTCTGAGTTTTTAGCAAAATGTAATGAAATATCAGGTTGATTTCTT... | \n", "236926307 | \n", "... | \n", "11.0 | \n", "390.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 19 | \n", "ADAM15 | \n", "ADAM15.6 | \n", "6 | \n", "7 | \n", "0 | \n", "GGTTGGACGGGATTGAGGAAGGTCCGCACAGCCTGTCTCTGCTCAG... | \n", "TCTGCGGACCTGCCGGCGTAGTTGCAGCGGGGGCTTGGGGAGGGGC... | \n", "ACCGCCACGCGCTGTCAAGCAACACTCTGCGGACCTGCCGGCGTAG... | \n", "CTACCATGACTGAAGGCGCCAGAGACTGGCGGTGTCTTAAGACTCC... | \n", "155035225 | \n", "... | \n", "110.0 | \n", "8455.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 20 | \n", "ADAR | \n", "ADAR.3 | \n", "8 | \n", "10 | \n", "0 | \n", "CTTTTATGTGTCCCTTGATAACAGTGACTTAACAATATACATTCCT... | \n", "CATAGACTCGGGTACTGTGATGATGGCTGCAGTCCAGTTTTATGAT... | \n", "GAGCAGAGTGAGGAAGACCCCCAAGCATAGACTCGGGTACTGTGAT... | \n", "CACATTGAAGGGACTTCGTTGGTTTTTTGGAGTCTTGGTTGTGACT... | \n", "154554567 | \n", "... | \n", "442.0 | \n", "30159.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 21 | \n", "ADGRB2 | \n", "ADGRB2.2 | \n", "3 | \n", "4 | \n", "0 | \n", "CTGTCCGTCCCTGTCCCGGGCTGGGGAGGGGGGAGGGGAACTTTGT... | \n", "CTTGTTTCTCAGAGGCCCCTCAGCCACTGGAACCCCATCTTCAGCC... | \n", "TTGGCCTGGGGTCCCAGGGCCCTTCCTTGTTTCTCAGAGGCCCCTC... | \n", "GGGCAGGGAGGCGCCGTGGACTCAGCCAGGCTGGGGGAGCCGGACA... | \n", "32192737 | \n", "... | \n", "6.0 | \n", "725.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22 | \n", "ADGRL2 | \n", "ADGRL2.17 | \n", "17 | \n", "26 | \n", "0 | \n", "ATTGCTAGGGTAAAATAAATACATTTGTGTCCAACTGAAATATAAT... | \n", "ACAATGAACTATTCTCATGAAAAATGGCTAAAGAAATTATATTTTG... | \n", "TTATTTCATATGTTTCCTCAACTGTACAATGAACTATTCTCATGAA... | \n", "AAGGCAAAGATTGAAAACATGCTTAACCACTAGCAATCAAGCCACA... | \n", "82457511 | \n", "... | \n", "24.0 | \n", "2003.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "4 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 23 | \n", "ADGRL2 | \n", "ADGRL2.21 | \n", "21 | \n", "26 | \n", "0 | \n", "ATGAGCCCATCACTAATATCCAGTGTAAAGTTTAACACGGTTTGAC... | \n", "TTCAGCAAAATTCTGCTTTTTTTTCATCCCTTTGTGTAAACCTGTT... | \n", "AAAGTTCTAATGAAATGTAAATTGTTTCAGCAAAATTCTGCTTTTT... | \n", "CTCTTCCATATTCCTTCTGCCTATATTTAGTAATTAATTTATTTTA... | \n", "82458083 | \n", "... | \n", "69.0 | \n", "4259.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "4 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 24 | \n", "ADGRL2 | \n", "ADGRL2.22 | \n", "22 | \n", "26 | \n", "2 | \n", "CCAGGACTAAAAAAAGAAGGATTGGAAGTTCTGCCATCAAATTTGG... | \n", "AAGTTTTAAGAGGGATATATTCTGAAAGCATTTTTGTTTGTTGCAT... | \n", "TACATATGCACAAAATCTGCTGGATAAGTTTTAAGAGGGATATATT... | \n", "GCCTGTTTGTTCTTTATGCTGAAAGGAATATATGTCTTCCAATTGC... | \n", "82458403 | \n", "... | \n", "1.0 | \n", "117.0 | \n", "3 | \n", "3 | \n", "3 | \n", "-1 | \n", "4 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 25 | \n", "ADGRL2 | \n", "ADGRL2.25 | \n", "25 | \n", "26 | \n", "0 | \n", "TTCTTCCTAGAGACATTCACTCTGTCTTTATTAAAAATAATAATAA... | \n", "TCTCTTTGTGATAGTCACAACTGTGAACTTATAAAGTCACATTTTT... | \n", "TACAGTTTTCACATTCTTGATTGTTTCTCTTTGTGATAGTCACAAC... | \n", "TGTATTTATTAACCCAGTTTCTTTGGGTCTGCCTAGACTTCACCTG... | \n", "82459593 | \n", "... | \n", "5.0 | \n", "262.0 | \n", "4 | \n", "4 | \n", "4 | \n", "3 | \n", "4 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 26 | \n", "ADIPOR1 | \n", "ADIPOR1.5 | \n", "3 | \n", "7 | \n", "3 | \n", "GAGCCTTCCCACCTGCGGGGTGGAGGAGGAACTTCCCAAGTGCTTT... | \n", "GGAATTCCGTTACGGCCTAGAAGGCGGCTGTACTGATGACACCCTT... | \n", "ACTTCTATGGAGTCTCCAACCTTCAGGAATTCCGTTACGGCCTAGA... | \n", "CCAGTCTCATCAGATTTTCCATGTCCTGGTGGTGGCAGCAGCCTTT... | \n", "202910652 | \n", "... | \n", "12.0 | \n", "989.0 | \n", "1 | \n", "1 | \n", "-1 | \n", "-1 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "
| 27 | \n", "ADIPOR1 | \n", "ADIPOR1.2 | \n", "6 | \n", "7 | \n", "0 | \n", "AAGAAACCTGCTATCATTGCTATGTATCTTGATGCAAAGACTATGA... | \n", "GTAAAATTTAAATGGGGAAAGATATTTAATATTTAATACTAAGCTT... | \n", "TTTTTTTTTTTCTTGGCAGAGTAATGTAAAATTTAAATGGGGAAAG... | \n", "CCGGCTAATCATGGAAGTGTGTCCAGGCTTCAAGTAACTTGAGTTT... | \n", "202909995 | \n", "... | \n", "784.0 | \n", "40043.0 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "
| 28 | \n", "ADORA1 | \n", "ADORA1.2 | \n", "2 | \n", "2 | \n", "0 | \n", "TCTGTTGGAAATTGGGTGTGCCCTGGCTCCCAAGGGAGGCCCATGT... | \n", "ACCTTCTGAACATGAGTGTCAACTCCAGGACTTGCTTCCAAGCCCT... | \n", "GGGAGGGGAGGTGGCCGTCGAGTTGACCTTCTGAACATGAGTGTCA... | \n", "GTGTGGGAGGGCGAGGCGGGGGATCCTGGAGCCCCTGTGTCGGGGG... | \n", "203136512 | \n", "... | \n", "0.0 | \n", "136.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 29 | \n", "ADPRHL2 | \n", "ADPRHL2.3 | \n", "3 | \n", "3 | \n", "0 | \n", "CTGGCTCTTGGCTGCCATGTGGCTTATTAACAGCTTCCAGTGGAAG... | \n", "TTGTGTGGATGAAGGGACAGGCACTTGCATCCAGCTGATCTAGGTC... | \n", "CCTAGCAGGGTCCCCGAGCAGCAGGTTGTGTGGATGAAGGGACAGG... | \n", "TAGCATCATTTCTCCCTGTTGGGTTTTAGCCAGTTTGCCAGCAAGC... | \n", "36559508 | \n", "... | \n", "527.0 | \n", "30706.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| ... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
| 22340 | \n", "ZFX | \n", "ZFX.13 | \n", "13 | \n", "21 | \n", "4 | \n", "CTTTTGCAACTTTATGTATGTAAATGTACCCTGAATTATATATATA... | \n", "TGAGGACTGCATTTTGGAATCTCCTAGAGGTAACTCATGGCTTATA... | \n", "GTTGTGTGCTACAAATGACACTTACTGAGGACTGCATTTTGGAATC... | \n", "GCTCATGTTGTATTTTGATTATTCTGTCTGTGCGGCTTCATCTTGG... | \n", "24230364 | \n", "... | \n", "13.0 | \n", "402.0 | \n", "2 | \n", "-1 | \n", "-1 | \n", "-1 | \n", "5 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 22341 | \n", "ZFX | \n", "ZFX.15 | \n", "15 | \n", "21 | \n", "0 | \n", "AAGTTAATGCTTTTTCTCAAGGAAAAAAAATGTACAGTTTTTGTAA... | \n", "TCAGAATATTTTCCTGTTATTGAATGTTTAGTCTATTTGATACCAG... | \n", "TGAGAATAACGTGCAAAAATAAAAATCAGAATATTTTCCTGTTATT... | \n", "ATAAAAAGAAAATCATATAGGGATGTGTGACATTATTGTAATTGTG... | \n", "24232603 | \n", "... | \n", "112.0 | \n", "5657.0 | \n", "3 | \n", "2 | \n", "2 | \n", "2 | \n", "5 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 22342 | \n", "ZFX | \n", "ZFX.17 | \n", "17 | \n", "21 | \n", "0 | \n", "TGGATTTGTTATATATTGTTCCTGTTATTTTTGACATCTTTGCTAT... | \n", "TTTCATCTTTTGTTTCGTGTATATACTGTTTGCCTTTTTCATAAAA... | \n", "AATTAAGTTTACCCTATGGATTTTGTTTCATCTTTTGTTTCGTGTA... | \n", "AATAAATCATAACCATTTTGCCACATTCTGTAACTGTTTAGCTAAG... | \n", "24234179 | \n", "... | \n", "21.0 | \n", "2096.0 | \n", "4 | \n", "3 | \n", "3 | \n", "3 | \n", "5 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 22343 | \n", "ZFX | \n", "ZFX.19 | \n", "19 | \n", "21 | \n", "2 | \n", "TTTTTGTAGTCCATGATTTATCTTGTTATTGCTTATGTAATCTTTT... | \n", "GAGTTCTTTGTACATTAAGCCTATTAACTTTCCAATACATTTGCTG... | \n", "AATCCTGTGCCCCATTTTCTATTTGGAGTTCTTTGTACATTAAGCC... | \n", "TATGTATATAATAGCACTTTAAGTTGTCGCTCTGATAAACTGCCTA... | \n", "24235904 | \n", "... | \n", "4.0 | \n", "344.0 | \n", "5 | \n", "4 | \n", "4 | \n", "-1 | \n", "5 | \n", "4 | \n", "4 | \n", "3 | \n", "
| 22344 | \n", "ZIC3 | \n", "ZIC3.13 | \n", "13 | \n", "13 | \n", "0 | \n", "TTGTGTTCAGAAAGCAATACCCAGGATCCCTTTAATTTTTGTTTGA... | \n", "TAAAGTGTTTAAAACTAGAAACATGAATTGTTGTTTTGTTAATTTT... | \n", "AATACCAGCATTCTATATGTAGAACTAAAGTGTTTAAAACTAGAAA... | \n", "AGTATGCATTATCTCATGCATTGTGTTGACCTTGGTGAAAATCTTT... | \n", "136659831 | \n", "... | \n", "1.0 | \n", "121.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22345 | \n", "ZMYM3 | \n", "ZMYM3.1 | \n", "3 | \n", "3 | \n", "0 | \n", "GAGAAGCTGTTGTCACGACTAACCTTCTGTCTCTGAAATTGTTTGT... | \n", "GGCGCCTGGCCTGTCCCTTCAGTGAGCCATGCCCACCCTTGTGTTG... | \n", "GTTTAAATTGTATATATTGTTCTGAGGCGCCTGGCCTGTCCCTTCA... | \n", "GTTTCCCAGGCTCCTTTTTGTGTTTTTATAACTGTCACCAGTTAGC... | \n", "70459493 | \n", "... | \n", "120.0 | \n", "8211.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22346 | \n", "ZNF157 | \n", "ZNF157.5 | \n", "5 | \n", "6 | \n", "2 | \n", "CCTTGTTGATAAGTATAGGTCTGGCTAGTCATTTATCTCTCCATTC... | \n", "AAGTTCTGCAGCTTGCTTTTTTCATGTAATGTTACCTTTCCAAGAT... | \n", "CATAAATGGGCTCACACTGTATTTAAAGTTCTGCAGCTTGCTTTTT... | \n", "TAGCATGAAGTGTGCAATACATACTACTATATTGTCTTTATATAAT... | \n", "47274001 | \n", "... | \n", "1.0 | \n", "86.0 | \n", "1 | \n", "1 | \n", "1 | \n", "-1 | \n", "1 | \n", "1 | \n", "1 | \n", "0 | \n", "
| 22347 | \n", "ZNF182 | \n", "ZNF182.2 | \n", "1 | \n", "2 | \n", "0 | \n", "GAAATAATATGGTAGATAATTTAGACTTATTTAGTAGAAGTTCTGC... | \n", "TACAAACCTTGTTGCTTCAATACAAAGACCCGATAAACACGAATCA... | \n", "AGTTTGGAAACATACTTCATCTGAGTACAAACCTTGTTGCTTCAAT... | \n", "ATTTTCTGACAAGAAAACAATTATCACCAAGAGTGCTCGTGACTGT... | \n", "47836945 | \n", "... | \n", "5.0 | \n", "380.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 22348 | \n", "ZNF182 | \n", "ZNF182.1 | \n", "2 | \n", "2 | \n", "0 | \n", "TTGAAAATGTGGGTGTACTATGTACTATGTGGATGTACTACCTTTT... | \n", "GGCTGGGGGGATGGAATTGAGAGGGAGACAACTGTATCCTTTCATA... | \n", "CCTTGGGAGGGGAAGGGGCAGTGGTGGCTGGGGGGATGGAATTGAG... | \n", "TTCATAAGTTATCTCTGGAAAGAGACATGAGAACCTGGTAACCCTG... | \n", "47834270 | \n", "... | \n", "38.0 | \n", "1251.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 22349 | \n", "ZNF185 | \n", "ZNF185.5 | \n", "5 | \n", "6 | \n", "0 | \n", "TTGCTTAGTGTTTCTAATCATACTTAATCCACACTAATGTGCGCAA... | \n", "TTTTGCAGATCTGAGGAAGAGGGATGCATTACCTTTTTGCTTCTTT... | \n", "CTCTCATGTCTAAAAAGGCACAGAATTTTGCAGATCTGAGGAAGAG... | \n", "TTGAAAGAAATCTTGCAAGAGCCATTATTGACTTAGATCCAAAACA... | \n", "152141997 | \n", "... | \n", "18.0 | \n", "576.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22350 | \n", "ZNF275 | \n", "ZNF275.4 | \n", "4 | \n", "6 | \n", "2 | \n", "ATTTTATGTCTACGTATATTGTTCCTTTACTGAACCCACCACATGC... | \n", "TAAGATGGGTGAAAGTCGATGCCTTCTAGTCTCAGTGAATTTAACC... | \n", "GTTCAAACGTGTGTTCTCTGTTCTCTAAGATGGGTGAAAGTCGATG... | \n", "TGCCACTTGGCTGCTTCCTGGCCAAGTCGCACCTGACTGCATGAAC... | \n", "152617885 | \n", "... | \n", "3.0 | \n", "291.0 | \n", "1 | \n", "1 | \n", "1 | \n", "-1 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "
| 22351 | \n", "ZNF275 | \n", "ZNF275.6 | \n", "6 | \n", "6 | \n", "0 | \n", "GTCTGATCCCCTACCAAATCTAGCACAGTGCCTTGCATCAAGTAGA... | \n", "CCCCCACCCATTAAATTGTGAGCTCTTAGAAGACAGGGGTGGCCTT... | \n", "GCTTCACCCCCTCCTCCTCAGCCCTCCCCCACCCATTAAATTGTGA... | \n", "TTCTGGCACTCACTATAATCAGCCTTGCACTAGAGCTGTTTGTGGA... | \n", "152618362 | \n", "... | \n", "66.0 | \n", "3151.0 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "
| 22352 | \n", "ZNF280C | \n", "ZNF280C.3 | \n", "4 | \n", "6 | \n", "0 | \n", "TTGGTTACATTGAATACAGATTTGCTGAACAGTTTTGATGTTATTT... | \n", "GCTCATATATATATAGATGTATATTTTTTTTAATTTCTTGTTTGTT... | \n", "GGACCAAAAAATGCACTTGTTTCTTGCTCATATATATATAGATGTA... | \n", "GCCATTAATGTAATTCCTCTGGATAAAGATAATATATTCAAAAAAT... | \n", "129336743 | \n", "... | \n", "49.0 | \n", "2016.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 22353 | \n", "ZNF280C | \n", "ZNF280C.1 | \n", "6 | \n", "6 | \n", "0 | \n", "TGATTCAGAAATAGCCATGTCATGCATGTGTCCTTTTTTGTTTTCA... | \n", "AGCTTGACAATCTGATCCCTCTTCACCTTCAGACTGTTAGTTATTT... | \n", "GTTTTAATAGGTGTTAGTGAGTTTTAGCTTGACAATCTGATCCCTC... | \n", "TAAAACTATTTATGCAGTCAGTACTAAGCTTACTTGTTATAAGCAG... | \n", "129335349 | \n", "... | \n", "3.0 | \n", "290.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 22354 | \n", "ZNF41 | \n", "ZNF41.16 | \n", "7 | \n", "22 | \n", "2 | \n", "CCTAGCTCTAGGCTATGTTACAGAAATATAGTCATTGAATGATACA... | \n", "AATGGAATTTTTAAATTTAAAGATATAACTTTATGAATTGAGAAAT... | \n", "CTCATGGTATATATATTTTAAGTGCAATGGAATTTTTAAATTTAAA... | \n", "ACATAGAAAAGATTTCCATGAAAAACTTTTTTCTTTTCCCTTGGGA... | \n", "47306101 | \n", "... | \n", "15.0 | \n", "331.0 | \n", "1 | \n", "1 | \n", "1 | \n", "-1 | \n", "3 | \n", "2 | \n", "1 | \n", "0 | \n", "
| 22355 | \n", "ZNF41 | \n", "ZNF41.12 | \n", "11 | \n", "22 | \n", "3 | \n", "GATAATTCATTTTCATTGTCATGTTGTATCCCATTCTGTGAATATG... | \n", "TCATTCACATTATGTATGTGAGAGTCATCCATATGTTGCATATAGT... | \n", "TATACTCTTTAGCATCTGTCTTCTGTCATTCACATTATGTATGTGA... | \n", "TTTTGTATTTTATATAAATTGAGTCAATTATATATCATATAATTGA... | \n", "47305154 | \n", "... | \n", "1.0 | \n", "68.0 | \n", "2 | \n", "2 | \n", "-1 | \n", "-1 | \n", "3 | \n", "2 | \n", "1 | \n", "0 | \n", "
| 22356 | \n", "ZNF41 | \n", "ZNF41.2 | \n", "21 | \n", "22 | \n", "4 | \n", "TTTAAGTTTTACATCTAGATCTAGCATGTATTTTGAGTTATATGGT... | \n", "TTGCCTAACCAAAGATTACAATGATTTTTTCCTGTGTTTTCTTCTA... | \n", "TTTGAGTGCTGTATCTAAGAAATCCTTGCCTAACCAAAGATTACAA... | \n", "CTTATTTTGATGAAGTCCGTTCTTTCCATTTGTTCATTTCTGGGTT... | \n", "47304199 | \n", "... | \n", "10.0 | \n", "499.0 | \n", "3 | \n", "-1 | \n", "-1 | \n", "-1 | \n", "3 | \n", "2 | \n", "1 | \n", "0 | \n", "
| 22357 | \n", "ZNF449 | \n", "ZNF449.3 | \n", "3 | \n", "11 | \n", "0 | \n", "TCTATCAGACGTATTGATTATAGCAGTACTATAGTTATTCTGCTGT... | \n", "AAATTATGACAATCCTTTTAGAGGTAGGGTCAATATAGTGGATAAA... | \n", "TCATAGGTGTAAACATAAAGCATATAAATTATGACAATCCTTTTAG... | \n", "TCTTCTTTTTTTAATTACAATGAAAAATTTTGTGTTCCAAGGCAAC... | \n", "134495399 | \n", "... | \n", "4.0 | \n", "192.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "
| 22358 | \n", "ZNF449 | \n", "ZNF449.6 | \n", "6 | \n", "11 | \n", "0 | \n", "AGTGCCTTAGAATGGATGTGCCCAACTGCTCTGTATTTATGCAATA... | \n", "ATGTAATGGCTTCTCTTTTCTCTCTTGTGGAATTGCATTCAAACCA... | \n", "TGAATGTAGAGATGAAAAATACAGAATGTAATGGCTTCTCTTTTCT... | \n", "GGCTCAAATTGATATCCCAGTAGCAATAAACATATAATATAGGAGG... | \n", "134497046 | \n", "... | \n", "4.0 | \n", "571.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "
| 22359 | \n", "ZNF449 | \n", "ZNF449.8 | \n", "8 | \n", "11 | \n", "0 | \n", "AAGATTAAATGAAATATATTTTGCTCTGGCCCTACACACTGTAAGC... | \n", "CCTAGCTATTATAAAGGGGAAATTACAGTACCTACCTCAAAAGTAC... | \n", "TAAGGGCAAAATACAGTACCTACCTCCTAGCTATTATAAAGGGGAA... | \n", "GGATAATTATACTTCTATGTCTAATTGTACTTCTGAGCATTTCAAA... | \n", "134497629 | \n", "... | \n", "7.0 | \n", "171.0 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "
| 22360 | \n", "ZNF630 | \n", "ZNF630.4 | \n", "2 | \n", "5 | \n", "0 | \n", "AATATGGAATCAATTTGCTCACCCTCAAACTGTCTCAGCCCTCTTC... | \n", "CCTTCCACAGAATGATCTGCTTAGGCCCTCAGAATATTTTCAACCC... | \n", "TATGTTCCTCAGTATACATGATTACCCTTCCACAGAATGATCTGCT... | \n", "CTCACATTGAATAGAAATAGTGACAACTTCTCAACTGTAGAATAGA... | \n", "47917631 | \n", "... | \n", "3.0 | \n", "241.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22361 | \n", "ZNF674 | \n", "ZNF674.1 | \n", "6 | \n", "6 | \n", "0 | \n", "GGATTATTGATGTGTAAAAATTTTTTTGATTGTAGTCTCCAGAAAT... | \n", "CTAGGAAAGAAATACACCAAATTATTAAGTAAATTGGCATTTGAAT... | \n", "ATCTGTGTAGTGTGGAGGGAAAAAGCTAGGAAAGAAATACACCAAA... | \n", "TAGGTGAGTGTGTGTGTATAGATAAACACATGGAACAAAAAGTTAG... | \n", "46357184 | \n", "... | \n", "17.0 | \n", "654.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22362 | \n", "ZNF711 | \n", "ZNF711.8 | \n", "8 | \n", "11 | \n", "0 | \n", "TGTTATGTGGGATTATTATTTCTAAATGTTACTCATTGAAATGAGC... | \n", "TGTGTTATGTGGCTGTAAATGATGTACACGCTGTAAAATAAGATCG... | \n", "AAATTTGGAATATCTACTAAAATTGTGTGTTATGTGGCTGTAAATG... | \n", "AATCAGTTCCTTGAGAATAAATTTTTTATCTTTCTTAACTTCAGAA... | \n", "84528343 | \n", "... | \n", "92.0 | \n", "4818.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22363 | \n", "ZNF81 | \n", "ZNF81.11 | \n", "11 | \n", "15 | \n", "0 | \n", "TTTATTGCATTTCTTCCTCCACTATTCTTCTCTAACAGATGACCAA... | \n", "TTGGGCAGCATGATAACAACCCAGCAAAAAGCTAACTGATACATTG... | \n", "GTTAACTGTTTTAAGTCACTAAGTTTTGGGCAGCATGATAACAACC... | \n", "GCCATCCATCCCAGCCATCCCAAACAACTACCAGAATAATGGATTA... | \n", "47781589 | \n", "... | \n", "6.0 | \n", "168.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 22364 | \n", "ZNF81 | \n", "ZNF81.14 | \n", "14 | \n", "15 | \n", "0 | \n", "TCCATTCATGTTTTGATGGAAATTTGTATTTCCAGCTTTTGGCTAT... | \n", "TTTTATTGCTAAGTGTTATTTCATTATATGGACATACCAGAATTTG... | \n", "GTTATATGCGTCTATGTTCATTCCTTTTTATTGCTAAGTGTTATTT... | \n", "TTGTTTGGCTCCTTCCATCCAGCATAATAAGTTTGAGATTCATTCA... | \n", "47784996 | \n", "... | \n", "16.0 | \n", "1011.0 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
| 22365 | \n", "ZRSR2 | \n", "ZRSR2.3 | \n", "3 | \n", "4 | \n", "0 | \n", "CAGGAGGAGGTCGGGTAATAGAGACAGAACTGTTCAGAGTCCCAAA... | \n", "AGGAGCCGCCGCAGCCGGAGCCAAAGTTCCTCTAGGTCCCGAAGTC... | \n", "GAGCCGGAGCCGGAGCCGGAGCCGCAGGAGCCGCCGCAGCCGGAGC... | \n", "GGAAGAAATAGGGACCGCAGCAGGGACCGCAGCCGGGGCCGGGGCA... | \n", "15841360 | \n", "... | \n", "65.0 | \n", "3824.0 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "
| 22366 | \n", "ZXDA | \n", "ZXDA.13 | \n", "1 | \n", "13 | \n", "2 | \n", "TGTGACCCTCAGCAAGTCACTTAACCTATCTGAGCCTTAATTTCCT... | \n", "ATGAGTTTGGAGATCTAAATTCTGATCTTGAGTCTGGAACTGACAA... | \n", "TGCAAAAAGAGCACAGCCCTGGACTATGAGTTTGGAGATCTAAATT... | \n", "TTGAGGATATTCTGGACTAAATATTTAAGTGCAGTCATTTCTTTTT... | \n", "57934228 | \n", "... | \n", "7.0 | \n", "325.0 | \n", "1 | \n", "1 | \n", "1 | \n", "-1 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "
| 22367 | \n", "ZXDA | \n", "ZXDA.5 | \n", "9 | \n", "13 | \n", "0 | \n", "TTGTTTATCTTCAGTCCTTGATTTATTAACATTTTGCCAATTGAAA... | \n", "CCTTTTTGTTTAAACAATGGAACATGATTTAATTTTATCTCATTTG... | \n", "TTCTGTTAGTGTTGGCATAAGCTTGCCTTTTTGTTTAAACAATGGA... | \n", "GACATGGCATGTAATTACAGACAGAAGTGTGACTGTAAACATATTA... | \n", "57931885 | \n", "... | \n", "12.0 | \n", "495.0 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "
| 22368 | \n", "ZXDB | \n", "ZXDB.2 | \n", "2 | \n", "6 | \n", "3 | \n", "TGGTTTGAATAGATTGCTTTTAAGGTCTTTCTGCTCTGTGATTCCT... | \n", "CAAGTCAGTTAACCTATCTGAGCCTTAATTTCCTTATTTATAAATT... | \n", "AACTGACAAGTTGTGTGACCCTGAGCAAGTCAGTTAACCTATCTGA... | \n", "ACAGCCCTGGACTACAAGTTTGGAGATTTAAATTCTGATCTTGAGT... | \n", "57621181 | \n", "... | \n", "7.0 | \n", "242.0 | \n", "1 | \n", "1 | \n", "-1 | \n", "-1 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "
| 22369 | \n", "ZXDB | \n", "ZXDB.5 | \n", "5 | \n", "6 | \n", "0 | \n", "GCAGATGAGTATGTCAAGGATTGAGATGAACACATAAGTCTTGGAA... | \n", "TGTTGTCATTCATTAAGGCCTCTTAAATAGACCACTATTTTTTGTG... | \n", "GTACTCATATAGCATATTTCAAAAATGTTGTCATTCATTAAGGCCT... | \n", "TTGATTGTCTACCCAATCAACAGTTTTCCCTCTTTGCTCTGGAAAT... | \n", "57623885 | \n", "... | \n", "38.0 | \n", "2088.0 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "
22370 rows × 54 columns
\n", "