{
"cells": [
{
"cell_type": "markdown",
"metadata": {
"id": "UNArpdTm04Uv"
},
"source": [
"First we need to install [DARTS](https://unit8co.github.io/darts/)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "3UwoGuzmkSyp"
},
"outputs": [],
"source": [
"%%capture\n",
"!pip install darts\n",
"!pip install sidetable"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "l4tds4uS1Htl"
},
"source": [
"Then mount GDrive where the data is stored:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "1ibBCezWjdTu",
"colab": {
"base_uri": "https://localhost:8080/"
},
"outputId": "23bfd388-478e-4ce3-eda4-fccb5495f463"
},
"outputs": [
{
"output_type": "stream",
"name": "stdout",
"text": [
"Mounted at /content/drive\n"
]
}
],
"source": [
"from google.colab import drive\n",
"drive.mount('/content/drive')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/",
"height": 206
},
"id": "EIWDE9eHkl1g",
"outputId": "3a37ddf1-7066-4c81-de0e-206f92820975"
},
"outputs": [
{
"output_type": "execute_result",
"data": {
"text/plain": [
" year month day hour PM2.5 PM10 SO2 NO2 CO O3 TEMP PRES \\\n",
"0 2013 3 1 0 4.0 4.0 4.0 7.0 300.0 77.0 -0.7 1023.0 \n",
"1 2013 3 1 1 8.0 8.0 4.0 7.0 300.0 77.0 -1.1 1023.2 \n",
"2 2013 3 1 2 7.0 7.0 5.0 10.0 300.0 73.0 -1.1 1023.5 \n",
"3 2013 3 1 3 6.0 6.0 11.0 11.0 300.0 72.0 -1.4 1024.5 \n",
"4 2013 3 1 4 3.0 3.0 12.0 12.0 300.0 72.0 -2.0 1025.2 \n",
"\n",
" DEWP RAIN wd WSPM station timestamp \n",
"0 -18.8 0.0 0.0 4.4 0 2013-03-01 00:00:00 \n",
"1 -18.2 0.0 1.0 4.7 0 2013-03-01 01:00:00 \n",
"2 -18.2 0.0 0.0 5.6 0 2013-03-01 02:00:00 \n",
"3 -19.4 0.0 2.0 3.1 0 2013-03-01 03:00:00 \n",
"4 -19.5 0.0 1.0 2.0 0 2013-03-01 04:00:00 "
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\n",
"
\n",
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\n",
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\n"
]
},
"metadata": {},
"execution_count": 6
}
],
"source": [
"import darts\n",
"import pandas as pd\n",
"\n",
"from urllib.request import urlopen\n",
"from zipfile import ZipFile\n",
"from io import BytesIO\n",
"\n",
"from darts import concatenate\n",
"\n",
"from darts import TimeSeries\n",
"\n",
"#this zip is a bunch of zips for each station\n",
"zf = ZipFile(\"/content/drive/MyDrive/PRSA2017_Data_20130301-20170228.zip\")\n",
"\n",
"#make a dataframe and unpack all the zips into it\n",
"df = pd.DataFrame()\n",
"for file in zf.infolist():\n",
" if file.filename.endswith('.csv'):\n",
" df = df._append(pd.read_csv(zf.open(file)))\n",
"\n",
"# the data format is broken into multiple columsn, so we need to fix that into a single DateTime\n",
"df['timestamp'] = pd.to_datetime(df[[\"year\", \"month\", \"day\", \"hour\"]])\n",
"df.drop(columns=['No'], inplace=True)\n",
"df.sort_values(by=['timestamp', 'station']).head(10)\n",
"\n",
"#now turn both wind direction and station name into ints so we can treat them like categorical vars\n",
"df = df.replace(df['station'].unique(), list(range(len(df['station'].unique()))))\n",
"df = df.replace(df['wd'].unique(), list(range(len(df['wd'].unique()))))\n",
"\n",
"df.head()\n",
"\n",
"df.to_csv('/content/drive/MyDrive/beijing_air_data/air_data.csv', index=False)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/",
"height": 614
},
"id": "7s1BMB9C12xf",
"outputId": "1ef1adb3-8f36-4a51-d247-af455ece7640"
},
"outputs": [
{
"output_type": "execute_result",
"data": {
"text/plain": [
" missing total percent\n",
"year 0 420768 0.0\n",
"month 0 420768 0.0\n",
"station 0 420768 0.0\n",
"WSPM 0 420768 0.0\n",
"wd 0 420768 0.0\n",
"RAIN 0 420768 0.0\n",
"DEWP 0 420768 0.0\n",
"PRES 0 420768 0.0\n",
"TEMP 0 420768 0.0\n",
"O3 0 420768 0.0\n",
"CO 0 420768 0.0\n",
"NO2 0 420768 0.0\n",
"SO2 0 420768 0.0\n",
"PM10 0 420768 0.0\n",
"PM2.5 0 420768 0.0\n",
"hour 0 420768 0.0\n",
"day 0 420768 0.0\n",
"timestamp 0 420768 0.0"
],
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"
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\n"
]
},
"metadata": {},
"execution_count": 7
}
],
"source": [
"import sidetable\n",
"\n",
"df.stb.missing()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "hH4LHWZL1wZL",
"outputId": "bf78ccf8-e1ea-49fc-dbf3-9269a38704b7"
},
"outputs": [
{
"output_type": "stream",
"name": "stderr",
"text": [
":9: SettingWithCopyWarning: \n",
"A value is trying to be set on a copy of a slice from a DataFrame.\n",
"Try using .loc[row_indexer,col_indexer] = value instead\n",
"\n",
"See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n",
" ts_df['ts_ind'] = delta_index\n"
]
}
],
"source": [
"#get the variables that we're interested in\n",
"ts_df = df[['PM2.5', 'timestamp', 'station', 'wd', 'WSPM', 'TEMP', 'PRES', 'DEWP', 'RAIN', 'O3', 'CO', 'NO2', 'SO2']]\n",
"\n",
"#create an indexed timestamp\n",
"d = ts_df.timestamp - pd.to_datetime('2013-03-01 00:00:00')\n",
"\n",
"delta_index = []\n",
"for delta in d:\n",
" delta_index.append(int(delta.total_seconds()/3600))\n",
"\n",
"#store our friendly new time stamp\n",
"ts_df['ts_ind'] = delta_index\n",
"\n",
"#get just the PM2.5, and ts_ind for the target that we want to predict\n",
"target_series = TimeSeries.from_group_dataframe(ts_df[[\"PM2.5\", 'ts_ind', 'station']], group_cols=['station'], time_col='ts_ind')\n",
"#now everything other than PM2.5 for the covs\n",
"cov_series = TimeSeries.from_group_dataframe(ts_df.drop([\"PM2.5\",'timestamp'], axis=1), group_cols=['station'], time_col='ts_ind')\n",
"\n",
"# Training is a little complex because some models use historical values, and some don't\n",
"# 80% for historical data, 10% for future values, 10% held back to test\n",
"future_split_point = int(len(cov_series[0]) * 0.8)\n",
"val_split_point = int(len(cov_series[0]) * 0.9)\n",
"\n",
"# since some of our models use past/future and others don't we need to get a little funky here.\n",
"# also, we need to make a list of time series instances, one for each station, so we do that here\n",
"past_target_series = []\n",
"future_target_series = []\n",
"test_target_series = []\n",
"\n",
"for ts in target_series:\n",
" past_target_series.append(ts.slice(0, future_split_point)) #up to our 'present'\n",
" future_target_series.append(ts.slice(0, val_split_point)) #up to our testing\n",
" test_target_series.append(ts.slice(future_split_point, len(ts))) #hold out for testing\n",
"\n",
"#now we do the same with our covariates\n",
"past_cov_series = []\n",
"future_cov_series = []\n",
"test_cov_series = []\n",
"\n",
"for ts in cov_series:\n",
" past_cov_series.append(ts.slice(0, future_split_point)) #up to our 'present'\n",
" future_cov_series.append(ts.slice(0, val_split_point)) #up to our testing\n",
" test_cov_series.append(ts.slice(val_split_point, len(ts))) #hold out for testing\n",
"\n",
"\n",
"non_static_cov = []\n",
"\n",
"#TCN doesn't use static covariates so we just have the station ID as covars in the time series\n",
"for i in range(0, len(cov_series)):\n",
" temp_series = TimeSeries.from_series(pd.DataFrame({'station':[i] * len(cov_series[i])}))\n",
" non_static_cov.append(concatenate([cov_series[i], temp_series], axis=1))"
]
},
{
"cell_type": "code",
"execution_count": null,
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"id": "_Lk8JP3pkW37",
"outputId": "b835baca-ea92-47f5-9877-1f5d9a32b3fc"
},
"outputs": [
{
"output_type": "stream",
"name": "stderr",
"text": [
"INFO:pytorch_lightning.utilities.rank_zero:GPU available: True (cuda), used: True\n",
"INFO:pytorch_lightning.utilities.rank_zero:TPU available: False, using: 0 TPU cores\n",
"INFO:pytorch_lightning.utilities.rank_zero:IPU available: False, using: 0 IPUs\n",
"INFO:pytorch_lightning.utilities.rank_zero:HPU available: False, using: 0 HPUs\n",
"INFO:pytorch_lightning.accelerators.cuda:LOCAL_RANK: 0 - CUDA_VISIBLE_DEVICES: [0]\n",
"INFO:pytorch_lightning.callbacks.model_summary:\n",
" | Name | Type | Params\n",
"----------------------------------------------------\n",
"0 | criterion | MSELoss | 0 \n",
"1 | train_metrics | MetricCollection | 0 \n",
"2 | val_metrics | MetricCollection | 0 \n",
"3 | dropout | MonteCarloDropout | 0 \n",
"4 | res_blocks | ModuleList | 464 \n",
"----------------------------------------------------\n",
"464 Trainable params\n",
"0 Non-trainable params\n",
"464 Total params\n",
"0.002 Total estimated model params size (MB)\n"
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{
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"data": {
"text/plain": [
"TCNModel(kernel_size=3, num_filters=3, num_layers=None, dilation_base=2, weight_norm=False, dropout=0.01, input_chunk_length=128, output_chunk_length=6, pl_trainer_kwargs={'accelerator': 'gpu', 'devices': [0], 'callbacks': []})"
]
},
"metadata": {},
"execution_count": 17
}
],
"source": [
"from darts.models import TCNModel\n",
"from darts.dataprocessing.transformers import Scaler\n",
"from darts.utils.likelihood_models import QuantileRegression\n",
"\n",
"from pytorch_lightning.callbacks.early_stopping import EarlyStopping\n",
"\n",
"early_stop = EarlyStopping(\n",
" monitor=\"train_loss\",\n",
" patience=5,\n",
" min_delta=0.001,\n",
" mode='min',\n",
")\n",
"\n",
"model = TCNModel(input_chunk_length=128,\n",
" output_chunk_length=6,\n",
" dropout=0.01,\n",
" pl_trainer_kwargs={\n",
" \"accelerator\": \"gpu\",\n",
" \"devices\": [0],\n",
" \"callbacks\": [early_stop]\n",
" })\n",
"\n",
"model.fit(past_target_series, past_covariates=non_static_cov, val_series=future_target_series, val_past_covariates=non_static_cov, epochs=40)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "UrnjMWaDyJQb"
},
"outputs": [],
"source": [
"model.save(\"/content/drive/MyDrive/tcn_model/12_20\")"
]
},
{
"cell_type": "code",
"source": [
"from darts.models import TCNModel\n",
"\n",
"tcn_model = TCNModel.load(\"/content/drive/MyDrive/tcn_model/12_20\")"
],
"metadata": {
"id": "0HSWeBYesQ7q"
},
"execution_count": null,
"outputs": []
},
{
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},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"INFO:pytorch_lightning.utilities.rank_zero:GPU available: True (cuda), used: True\n",
"INFO:pytorch_lightning.utilities.rank_zero:TPU available: False, using: 0 TPU cores\n",
"INFO:pytorch_lightning.utilities.rank_zero:IPU available: False, using: 0 IPUs\n",
"INFO:pytorch_lightning.utilities.rank_zero:HPU available: False, using: 0 HPUs\n",
"INFO:pytorch_lightning.accelerators.cuda:LOCAL_RANK: 0 - CUDA_VISIBLE_DEVICES: [0]\n",
"INFO:pytorch_lightning.callbacks.model_summary:\n",
" | Name | Type | Params\n",
"----------------------------------------------------------------------------------------\n",
"0 | train_metrics | MetricCollection | 0 \n",
"1 | val_metrics | MetricCollection | 0 \n",
"2 | input_embeddings | _MultiEmbedding | 0 \n",
"3 | static_covariates_vsn | _VariableSelectionNetwork | 528 \n",
"4 | encoder_vsn | _VariableSelectionNetwork | 15.1 K\n",
"5 | decoder_vsn | _VariableSelectionNetwork | 6.6 K \n",
"6 | static_context_grn | _GatedResidualNetwork | 1.1 K \n",
"7 | static_context_hidden_encoder_grn | _GatedResidualNetwork | 1.1 K \n",
"8 | static_context_cell_encoder_grn | _GatedResidualNetwork | 1.1 K \n",
"9 | static_context_enrichment | _GatedResidualNetwork | 1.1 K \n",
"10 | lstm_encoder | LSTM | 2.2 K \n",
"11 | lstm_decoder | LSTM | 2.2 K \n",
"12 | post_lstm_gan | _GateAddNorm | 576 \n",
"13 | static_enrichment_grn | _GatedResidualNetwork | 1.4 K \n",
"14 | multihead_attn | _InterpretableMultiHeadAttention | 676 \n",
"15 | post_attn_gan | _GateAddNorm | 576 \n",
"16 | feed_forward_block | _GatedResidualNetwork | 1.1 K \n",
"17 | pre_output_gan | _GateAddNorm | 576 \n",
"18 | output_layer | Linear | 289 \n",
"----------------------------------------------------------------------------------------\n",
"36.2 K Trainable params\n",
"0 Non-trainable params\n",
"36.2 K Total params\n",
"0.145 Total estimated model params size (MB)\n"
]
},
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"Validation: | | 0/? [00:00, ?it/s]"
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/plain": [
"TFTModel(hidden_size=16, lstm_layers=1, num_attention_heads=4, full_attention=False, feed_forward=GatedResidualNetwork, dropout=0.1, hidden_continuous_size=8, categorical_embedding_sizes=None, add_relative_index=False, loss_fn=None, likelihood=None, norm_type=LayerNorm, use_static_covariates=True, input_chunk_length=6, output_chunk_length=6, n_epochs=20, pl_trainer_kwargs={'accelerator': 'gpu', 'devices': [0], 'callbacks': []})"
]
},
"execution_count": 36,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"from darts.models import TFTModel\n",
"\n",
"early_stop = EarlyStopping(\n",
" monitor=\"train_loss\",\n",
" patience=5,\n",
" min_delta=0.05,\n",
" mode='min',\n",
")\n",
"\n",
"model = TFTModel(\n",
" input_chunk_length=6,\n",
" output_chunk_length=6,\n",
" n_epochs=20,\n",
" pl_trainer_kwargs={\n",
" \"accelerator\": \"gpu\",\n",
" \"devices\": [0],\n",
" \"callbacks\": [early_stop]\n",
" }\n",
")\n",
"\n",
"# future_covariates are mandatory for `TFTModel`\n",
"model.fit(past_target_series,\n",
" past_covariates=cov_series,\n",
" future_covariates=cov_series,\n",
" val_series=future_target_series,\n",
" val_future_covariates=future_cov_series,\n",
" val_past_covariates=cov_series)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "QwAjPdm4khDz"
},
"outputs": [],
"source": [
"model.save(\"/content/drive/MyDrive/tft_model/11_11\")"
]
},
{
"cell_type": "code",
"source": [
"from darts.models import NHiTSModel\n",
"\n",
"early_stop = EarlyStopping(\n",
" monitor=\"train_loss\",\n",
" patience=5,\n",
" min_delta=0.05,\n",
" mode='min',\n",
")\n",
"\n",
"model_nhits = NHiTSModel(\n",
" input_chunk_length=48,\n",
" output_chunk_length=6,\n",
" num_blocks=3,\n",
" num_layers=4,\n",
" layer_widths=512,\n",
" n_epochs=100,\n",
" nr_epochs_val_period=1,\n",
" batch_size=800,\n",
" pl_trainer_kwargs={\n",
" \"accelerator\": \"gpu\",\n",
" \"devices\": [0],\n",
" \"callbacks\": [early_stop]\n",
" })\n",
"\n",
"model_nhits.fit(past_target_series,\n",
" past_covariates=cov_series,\n",
" val_series=future_target_series,\n",
" val_past_covariates=cov_series)"
],
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/",
"height": 424,
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"NHiTSModel(num_stacks=3, num_blocks=3, num_layers=4, layer_widths=512, pooling_kernel_sizes=None, n_freq_downsample=None, dropout=0.1, activation=ReLU, MaxPool1d=True, input_chunk_length=48, output_chunk_length=6, n_epochs=100, nr_epochs_val_period=1, batch_size=800, pl_trainer_kwargs={'accelerator': 'gpu', 'devices': [0], 'callbacks': []})"
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],
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"from darts.models import NBEATSModel\n",
"\n",
"model_nbeats = NBEATSModel(\n",
" input_chunk_length=30,\n",
" output_chunk_length=7,\n",
" generic_architecture=False,\n",
" num_blocks=3,\n",
" num_layers=4,\n",
" layer_widths=512,\n",
" n_epochs=100,\n",
" nr_epochs_val_period=1,\n",
" batch_size=800,\n",
" model_name=\"nbeats_interpretable_run\",\n",
" # input_chunk_length=10,\n",
" # output_chunk_length=10,\n",
" # n_epochs=1,\n",
" # generic_architecture=False\n",
")\n",
"\n",
"model_nbeats.fit(series=past_target_series,\n",
" past_covariates=past_cov_series,\n",
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" val_past_covariates=cov_series,\n",
" epochs=20)\n",
"\n",
"model_nbeats.save('/content/drive/MyDrive/nbeats_model/11_16')"
],
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},
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"\n",
"from darts.metrics.metrics import rmse, mape\n",
"\n",
"dlin_model = DLinearModel(\n",
" input_chunk_length=24,\n",
" output_chunk_length=6,\n",
" n_epochs=20,\n",
")\n",
"dlin_model.fit(past_target_series, past_covariates=past_cov_series, future_covariates=future_cov_series)\n",
"\n",
"dlin_model.save('/content/drive/MyDrive/dlinear_model/12_11')"
],
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},
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}
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