{ "cells": [ { "cell_type": "markdown", "metadata": { "id": "UNArpdTm04Uv" }, "source": [ "First we need to install [DARTS](https://unit8co.github.io/darts/)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "id": "3UwoGuzmkSyp" }, "outputs": [], "source": [ "%%capture\n", "!pip install darts\n", "!pip install sidetable" ] }, { "cell_type": "markdown", "metadata": { "id": "l4tds4uS1Htl" }, "source": [ "Then mount GDrive where the data is stored:" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "id": "1ibBCezWjdTu", "colab": { "base_uri": "https://localhost:8080/" }, "outputId": "23bfd388-478e-4ce3-eda4-fccb5495f463" }, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ "Mounted at /content/drive\n" ] } ], "source": [ "from google.colab import drive\n", "drive.mount('/content/drive')" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "colab": { "base_uri": "https://localhost:8080/", "height": 206 }, "id": "EIWDE9eHkl1g", "outputId": "3a37ddf1-7066-4c81-de0e-206f92820975" }, "outputs": [ { "output_type": "execute_result", "data": { "text/plain": [ " year month day hour PM2.5 PM10 SO2 NO2 CO O3 TEMP PRES \\\n", "0 2013 3 1 0 4.0 4.0 4.0 7.0 300.0 77.0 -0.7 1023.0 \n", "1 2013 3 1 1 8.0 8.0 4.0 7.0 300.0 77.0 -1.1 1023.2 \n", "2 2013 3 1 2 7.0 7.0 5.0 10.0 300.0 73.0 -1.1 1023.5 \n", "3 2013 3 1 3 6.0 6.0 11.0 11.0 300.0 72.0 -1.4 1024.5 \n", "4 2013 3 1 4 3.0 3.0 12.0 12.0 300.0 72.0 -2.0 1025.2 \n", "\n", " DEWP RAIN wd WSPM station timestamp \n", "0 -18.8 0.0 0.0 4.4 0 2013-03-01 00:00:00 \n", "1 -18.2 0.0 1.0 4.7 0 2013-03-01 01:00:00 \n", "2 -18.2 0.0 0.0 5.6 0 2013-03-01 02:00:00 \n", "3 -19.4 0.0 2.0 3.1 0 2013-03-01 03:00:00 \n", "4 -19.5 0.0 1.0 2.0 0 2013-03-01 04:00:00 " ], "text/html": [ "\n", "
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\n" ] }, "metadata": {}, "execution_count": 6 } ], "source": [ "import darts\n", "import pandas as pd\n", "\n", "from urllib.request import urlopen\n", "from zipfile import ZipFile\n", "from io import BytesIO\n", "\n", "from darts import concatenate\n", "\n", "from darts import TimeSeries\n", "\n", "#this zip is a bunch of zips for each station\n", "zf = ZipFile(\"/content/drive/MyDrive/PRSA2017_Data_20130301-20170228.zip\")\n", "\n", "#make a dataframe and unpack all the zips into it\n", "df = pd.DataFrame()\n", "for file in zf.infolist():\n", " if file.filename.endswith('.csv'):\n", " df = df._append(pd.read_csv(zf.open(file)))\n", "\n", "# the data format is broken into multiple columsn, so we need to fix that into a single DateTime\n", "df['timestamp'] = pd.to_datetime(df[[\"year\", \"month\", \"day\", \"hour\"]])\n", "df.drop(columns=['No'], inplace=True)\n", "df.sort_values(by=['timestamp', 'station']).head(10)\n", "\n", "#now turn both wind direction and station name into ints so we can treat them like categorical vars\n", "df = df.replace(df['station'].unique(), list(range(len(df['station'].unique()))))\n", "df = df.replace(df['wd'].unique(), list(range(len(df['wd'].unique()))))\n", "\n", "df.head()\n", "\n", "df.to_csv('/content/drive/MyDrive/beijing_air_data/air_data.csv', index=False)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "colab": { "base_uri": "https://localhost:8080/", "height": 614 }, "id": "7s1BMB9C12xf", "outputId": "1ef1adb3-8f36-4a51-d247-af455ece7640" }, "outputs": [ { "output_type": "execute_result", "data": { "text/plain": [ " missing total percent\n", "year 0 420768 0.0\n", "month 0 420768 0.0\n", "station 0 420768 0.0\n", "WSPM 0 420768 0.0\n", "wd 0 420768 0.0\n", "RAIN 0 420768 0.0\n", "DEWP 0 420768 0.0\n", "PRES 0 420768 0.0\n", "TEMP 0 420768 0.0\n", "O3 0 420768 0.0\n", "CO 0 420768 0.0\n", "NO2 0 420768 0.0\n", "SO2 0 420768 0.0\n", "PM10 0 420768 0.0\n", "PM2.5 0 420768 0.0\n", "hour 0 420768 0.0\n", "day 0 420768 0.0\n", "timestamp 0 420768 0.0" ], "text/html": [ "\n", "
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\n" ] }, "metadata": {}, "execution_count": 7 } ], "source": [ "import sidetable\n", "\n", "df.stb.missing()" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "hH4LHWZL1wZL", "outputId": "bf78ccf8-e1ea-49fc-dbf3-9269a38704b7" }, "outputs": [ { "output_type": "stream", "name": "stderr", "text": [ ":9: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n", " ts_df['ts_ind'] = delta_index\n" ] } ], "source": [ "#get the variables that we're interested in\n", "ts_df = df[['PM2.5', 'timestamp', 'station', 'wd', 'WSPM', 'TEMP', 'PRES', 'DEWP', 'RAIN', 'O3', 'CO', 'NO2', 'SO2']]\n", "\n", "#create an indexed timestamp\n", "d = ts_df.timestamp - pd.to_datetime('2013-03-01 00:00:00')\n", "\n", "delta_index = []\n", "for delta in d:\n", " delta_index.append(int(delta.total_seconds()/3600))\n", "\n", "#store our friendly new time stamp\n", "ts_df['ts_ind'] = delta_index\n", "\n", "#get just the PM2.5, and ts_ind for the target that we want to predict\n", "target_series = TimeSeries.from_group_dataframe(ts_df[[\"PM2.5\", 'ts_ind', 'station']], group_cols=['station'], time_col='ts_ind')\n", "#now everything other than PM2.5 for the covs\n", "cov_series = TimeSeries.from_group_dataframe(ts_df.drop([\"PM2.5\",'timestamp'], axis=1), group_cols=['station'], time_col='ts_ind')\n", "\n", "# Training is a little complex because some models use historical values, and some don't\n", "# 80% for historical data, 10% for future values, 10% held back to test\n", "future_split_point = int(len(cov_series[0]) * 0.8)\n", "val_split_point = int(len(cov_series[0]) * 0.9)\n", "\n", "# since some of our models use past/future and others don't we need to get a little funky here.\n", "# also, we need to make a list of time series instances, one for each station, so we do that here\n", "past_target_series = []\n", "future_target_series = []\n", "test_target_series = []\n", "\n", "for ts in target_series:\n", " past_target_series.append(ts.slice(0, future_split_point)) #up to our 'present'\n", " future_target_series.append(ts.slice(0, val_split_point)) #up to our testing\n", " test_target_series.append(ts.slice(future_split_point, len(ts))) #hold out for testing\n", "\n", "#now we do the same with our covariates\n", "past_cov_series = []\n", "future_cov_series = []\n", "test_cov_series = []\n", "\n", "for ts in cov_series:\n", " past_cov_series.append(ts.slice(0, future_split_point)) #up to our 'present'\n", " future_cov_series.append(ts.slice(0, val_split_point)) #up to our testing\n", " test_cov_series.append(ts.slice(val_split_point, len(ts))) #hold out for testing\n", "\n", "\n", "non_static_cov = []\n", "\n", "#TCN doesn't use static covariates so we just have the station ID as covars in the time series\n", "for i in range(0, len(cov_series)):\n", " temp_series = TimeSeries.from_series(pd.DataFrame({'station':[i] * len(cov_series[i])}))\n", " non_static_cov.append(concatenate([cov_series[i], temp_series], axis=1))" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "colab": { "base_uri": "https://localhost:8080/", "height": 424, "referenced_widgets": [ "e580a0dde1794ae9bc105f2c5dbc58a3", "66c2b87cf2c14b7f9261b95de9de92ca", "6858e368048345c3b6fa0220457b52bd", "9468e7ff99c34da298c5d1882f64eaec", "94c2ee3aa769464bb8641c6582aee2a1", "161b676ed53946e0b3ba37cf5e93b27f", "bbd54582c83f41b7ad27df64aef2dbf8", "f4915a30525b459e912f19d42b1b8349", "e400c622d42a4d3b980f9f8cd97b6ec6", "c3f7563c5371448b9ac49094fb02e220", "cbc0b6432f0447e294db7662178f509f", "0e7cbb7679c3436d996ccfe3f89336ab", "bfd860fbd0d2425687e8499d2b7b87b5", "21b6e4455be649718f5070ed8516d50f", "da7238fb94bb4ea2ac11abea13ff4620", 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"2abf3017da184603b4ad6824eef92e32", "f4f51eb2bd244a55b65a9edd14a3360b", "80da4266c6b24caeb3af4c2edfd236f1", "0cbeb03bb22a42a0b4e833ea1485dcc2", "da8eb016f8354cc88d2f2c786872af2e", "da103ecf222a4de6b8da79a1ae47aef3", "45dc201f3a744635893c3b10f8c0a33e", "bd097bf8f41845d0b2b38b4430144189", "5ff78ba496f94a5cb9eebf67b744268c", "144161432ded4945b66fab33e761567e", "03e92ba2dd3744fbbf8f132eba43d0b9", "e84c70bb65cf49039995c6af043ae96a", "40d9d29e7e3949578de8bd522d008fa5", "9890dd268ad1474dbd7730c8ee9171bb", "41d87938f3644026bb5bf4a454173561", "fd1d2f23b7084ace9050b5feaa6850f7", "10ed8a39e8bc41a096588d7cbca83f15", "c79030ec235749a9bd44d3648893795b", "47fa6868d95d48d09fe55e6ded3de173" ] }, "id": "_Lk8JP3pkW37", "outputId": "b835baca-ea92-47f5-9877-1f5d9a32b3fc" }, "outputs": [ { "output_type": "stream", "name": "stderr", "text": [ "INFO:pytorch_lightning.utilities.rank_zero:GPU available: True (cuda), used: True\n", "INFO:pytorch_lightning.utilities.rank_zero:TPU available: False, using: 0 TPU cores\n", "INFO:pytorch_lightning.utilities.rank_zero:IPU available: False, using: 0 IPUs\n", "INFO:pytorch_lightning.utilities.rank_zero:HPU available: False, using: 0 HPUs\n", "INFO:pytorch_lightning.accelerators.cuda:LOCAL_RANK: 0 - CUDA_VISIBLE_DEVICES: [0]\n", "INFO:pytorch_lightning.callbacks.model_summary:\n", " | Name | Type | Params\n", "----------------------------------------------------\n", "0 | criterion | MSELoss | 0 \n", "1 | train_metrics | MetricCollection | 0 \n", "2 | val_metrics | MetricCollection | 0 \n", "3 | dropout | MonteCarloDropout | 0 \n", "4 | res_blocks | ModuleList | 464 \n", "----------------------------------------------------\n", "464 Trainable params\n", "0 Non-trainable params\n", "464 Total params\n", "0.002 Total estimated model params size (MB)\n" ] }, { "output_type": "display_data", "data": { "text/plain": [ "Sanity Checking: | | 0/? [00:00]})" ] }, "metadata": {}, "execution_count": 17 } ], "source": [ "from darts.models import TCNModel\n", "from darts.dataprocessing.transformers import Scaler\n", "from darts.utils.likelihood_models import QuantileRegression\n", "\n", "from pytorch_lightning.callbacks.early_stopping import EarlyStopping\n", "\n", "early_stop = EarlyStopping(\n", " monitor=\"train_loss\",\n", " patience=5,\n", " min_delta=0.001,\n", " mode='min',\n", ")\n", "\n", "model = TCNModel(input_chunk_length=128,\n", " output_chunk_length=6,\n", " dropout=0.01,\n", " pl_trainer_kwargs={\n", " \"accelerator\": \"gpu\",\n", " \"devices\": [0],\n", " \"callbacks\": [early_stop]\n", " })\n", "\n", "model.fit(past_target_series, past_covariates=non_static_cov, val_series=future_target_series, val_past_covariates=non_static_cov, epochs=40)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "id": "UrnjMWaDyJQb" }, "outputs": [], "source": [ "model.save(\"/content/drive/MyDrive/tcn_model/12_20\")" ] }, { "cell_type": "code", "source": [ "from darts.models import TCNModel\n", "\n", "tcn_model = TCNModel.load(\"/content/drive/MyDrive/tcn_model/12_20\")" ], "metadata": { "id": "0HSWeBYesQ7q" }, "execution_count": null, "outputs": [] }, { "cell_type": "code", "execution_count": null, "metadata": { "colab": { "base_uri": "https://localhost:8080/", "height": 852, "referenced_widgets": [ "7cfdbfdbd32348a581d5be8df5058538", "3c8f115cabc94f018c8c5c8d2ae58467", "6ed286901116453489f68fbe8f89dba7", "74fceb15944746beae09c68c40ddf8c8", "b1aa73368b53478a8718ef827185c962", "2936572467ff48409bdd64503df1cfcb", "da5bb70ac4244b7b86798b5c36bd5b6d", "4c61e3046f314cc09395a556d335a76e", "cb53c2d625424c4fba181f8a78f90696", "231e0bb8cbf549e0b41311b0e0642184", "70d08a47c2e045109e51d81e827aa8c6", "7e1e57ce9bf24c2fbc17fada7b16411d", "92529b0b411a4087bb3ccf9ec1caecd6", "0bc7500e6411480e93d0777c72bb547c", "4a6c08b06ef0438eb23b1823e933e6e7", "e9260e068a614267b310b1b082d01d22", 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"d2702a0eab8c4221b061a1003d2264d2", "1787c830c59748728e12d91f1ed49835", "44b8d5d5d79f41e68b42f43d1e9ff02e", "1ce7750f4c1b4b44a71ad16322cbb814", "24415e3cddf047ab8bac0ca937112cc6", "ca161ceffc9443ea810f0857d995b2a4", "2626ab93aa2d42b1bb1c5072ba4b16d2", "f24e84eb655b44cbad78a3d7ba5281c5", "41b5ebdcc74f40a39b956bbc1d3f7b04", "96bac9437e5f4746ba934bb37129ab31", "60f0e04fdeb64312811d0792f97a64e3", "06553313aa53462da96f820c0d0613a3", "f1fae8ca73614064a3361e43f267072e", "1e20ad32286040348a8c88c5c5b7f6ee", "94c93ee1e3944af28127652f256818bf", "d31757e23d4c4451b3ebb284d4d89bae", "5700887e594a45b6b3cdb70dbfbaa4be", "6b1e391c40e04bc1a43c52849bee05fd", "adaf23d672924fa485e89638d5b9a738", "2c5df061673f4d4890e13a624ea724fe", "853c445fcb0c48489bd51c787e4aeeeb", "eb92ffe125854e40bdd9e3885379e95a", "75a7cf6697e14283b5e5b9dc85e8d5cc", "0d73a137985343959e910ecf01fddb9f", "011c206c796e44ce84b2be66e1620ac0", "ae627032ac1e45f0a42c0faadfe256ee", "de5fe46b7e8b4539bf11a3dc02df3479", 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"f583b608f338401ab8faeb9f5f0e8319", "7a52a34f4bb740659256173c58c2333f", "dfb84336b0a246fdb2fb518179e434ab", "e2cca2c1277346029a570d856e60d516" ] }, "id": "TTKS9_OSkB8a", "outputId": "c2db5b92-efff-443b-daaf-e399509c60d2" }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "INFO:pytorch_lightning.utilities.rank_zero:GPU available: True (cuda), used: True\n", "INFO:pytorch_lightning.utilities.rank_zero:TPU available: False, using: 0 TPU cores\n", "INFO:pytorch_lightning.utilities.rank_zero:IPU available: False, using: 0 IPUs\n", "INFO:pytorch_lightning.utilities.rank_zero:HPU available: False, using: 0 HPUs\n", "INFO:pytorch_lightning.accelerators.cuda:LOCAL_RANK: 0 - CUDA_VISIBLE_DEVICES: [0]\n", "INFO:pytorch_lightning.callbacks.model_summary:\n", " | Name | Type | Params\n", "----------------------------------------------------------------------------------------\n", "0 | train_metrics | MetricCollection | 0 \n", "1 | val_metrics | MetricCollection | 0 \n", "2 | input_embeddings | _MultiEmbedding | 0 \n", "3 | static_covariates_vsn | _VariableSelectionNetwork | 528 \n", "4 | encoder_vsn | _VariableSelectionNetwork | 15.1 K\n", "5 | decoder_vsn | _VariableSelectionNetwork | 6.6 K \n", "6 | static_context_grn | _GatedResidualNetwork | 1.1 K \n", "7 | static_context_hidden_encoder_grn | _GatedResidualNetwork | 1.1 K \n", "8 | static_context_cell_encoder_grn | _GatedResidualNetwork | 1.1 K \n", "9 | static_context_enrichment | _GatedResidualNetwork | 1.1 K \n", "10 | lstm_encoder | LSTM | 2.2 K \n", "11 | lstm_decoder | LSTM | 2.2 K \n", "12 | post_lstm_gan | _GateAddNorm | 576 \n", "13 | static_enrichment_grn | _GatedResidualNetwork | 1.4 K \n", "14 | multihead_attn | _InterpretableMultiHeadAttention | 676 \n", "15 | post_attn_gan | _GateAddNorm | 576 \n", "16 | feed_forward_block | _GatedResidualNetwork | 1.1 K \n", "17 | pre_output_gan | _GateAddNorm | 576 \n", "18 | output_layer | Linear | 289 \n", "----------------------------------------------------------------------------------------\n", "36.2 K Trainable params\n", "0 Non-trainable params\n", "36.2 K Total params\n", "0.145 Total estimated model params size (MB)\n" ] }, { "data": { "application/vnd.jupyter.widget-view+json": { "model_id": "7cfdbfdbd32348a581d5be8df5058538", "version_major": 2, "version_minor": 0 }, "text/plain": [ "Sanity Checking: | | 0/? [00:00]})" ] }, "execution_count": 36, "metadata": {}, "output_type": "execute_result" } ], "source": [ "from darts.models import TFTModel\n", "\n", "early_stop = EarlyStopping(\n", " monitor=\"train_loss\",\n", " patience=5,\n", " min_delta=0.05,\n", " mode='min',\n", ")\n", "\n", "model = TFTModel(\n", " input_chunk_length=6,\n", " output_chunk_length=6,\n", " n_epochs=20,\n", " pl_trainer_kwargs={\n", " \"accelerator\": \"gpu\",\n", " \"devices\": [0],\n", " \"callbacks\": [early_stop]\n", " }\n", ")\n", "\n", "# future_covariates are mandatory for `TFTModel`\n", "model.fit(past_target_series,\n", " past_covariates=cov_series,\n", " future_covariates=cov_series,\n", " val_series=future_target_series,\n", " val_future_covariates=future_cov_series,\n", " val_past_covariates=cov_series)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "id": "QwAjPdm4khDz" }, "outputs": [], "source": [ "model.save(\"/content/drive/MyDrive/tft_model/11_11\")" ] }, { "cell_type": "code", "source": [ "from darts.models import NHiTSModel\n", "\n", "early_stop = EarlyStopping(\n", " monitor=\"train_loss\",\n", " patience=5,\n", " min_delta=0.05,\n", " mode='min',\n", ")\n", "\n", "model_nhits = NHiTSModel(\n", " input_chunk_length=48,\n", " output_chunk_length=6,\n", " num_blocks=3,\n", " num_layers=4,\n", " layer_widths=512,\n", " n_epochs=100,\n", " nr_epochs_val_period=1,\n", " batch_size=800,\n", " pl_trainer_kwargs={\n", " \"accelerator\": \"gpu\",\n", " \"devices\": [0],\n", " \"callbacks\": [early_stop]\n", " })\n", "\n", "model_nhits.fit(past_target_series,\n", " past_covariates=cov_series,\n", " val_series=future_target_series,\n", " val_past_covariates=cov_series)" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/", "height": 424, "referenced_widgets": [ "2eb0f518a5024b77984f9e556f1a2ce4", "2c4e267235b64bcea9ad4b451b00e946", "f5abd50a99b0473db91979b67c5099fa", "8912fa6e47b14e2880448908317b00a9", "afd6c51ac5424d54bd612d8355fb3327", 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train_metrics | MetricCollection | 0 \n", "2 | val_metrics | MetricCollection | 0 \n", "3 | stacks | ModuleList | 10.3 M\n", "---------------------------------------------------\n", "10.0 M Trainable params\n", "270 K Non-trainable params\n", "10.3 M Total params\n", "41.108 Total estimated model params size (MB)\n" ] }, { "output_type": "display_data", "data": { "text/plain": [ "Sanity Checking: | | 0/? [00:00]})" ] }, "metadata": {}, "execution_count": 30 } ] }, { "cell_type": "code", "source": [], "metadata": { "id": "vTXJ0Nr96FMW" }, "execution_count": null, "outputs": [] }, { "cell_type": "code", "source": [ "model_nhits.save(\"/content/drive/MyDrive/nhits_model/12_20\")" ], "metadata": { "id": "w2uxSCSl1Zv0" }, "execution_count": null, "outputs": [] }, { "cell_type": "code", "source": [ "from darts.models import NBEATSModel\n", "\n", "model_nbeats = NBEATSModel(\n", " input_chunk_length=30,\n", " output_chunk_length=7,\n", " generic_architecture=False,\n", " num_blocks=3,\n", " num_layers=4,\n", " layer_widths=512,\n", " n_epochs=100,\n", " nr_epochs_val_period=1,\n", " batch_size=800,\n", " model_name=\"nbeats_interpretable_run\",\n", " # input_chunk_length=10,\n", " # output_chunk_length=10,\n", " # n_epochs=1,\n", " # generic_architecture=False\n", ")\n", "\n", "model_nbeats.fit(series=past_target_series,\n", " past_covariates=past_cov_series,\n", " val_series=future_target_series,\n", " val_past_covariates=cov_series,\n", " epochs=20)\n", "\n", "model_nbeats.save('/content/drive/MyDrive/nbeats_model/11_16')" ], "metadata": { "id": "JG3ClbXX6GcY" }, "execution_count": null, "outputs": [] }, { "cell_type": "code", "source": [ "from darts.models import DLinearModel\n", "\n", "from darts.metrics.metrics import rmse, mape\n", "\n", "dlin_model = DLinearModel(\n", " input_chunk_length=24,\n", " output_chunk_length=6,\n", " n_epochs=20,\n", ")\n", "dlin_model.fit(past_target_series, past_covariates=past_cov_series, future_covariates=future_cov_series)\n", "\n", "dlin_model.save('/content/drive/MyDrive/dlinear_model/12_11')" ], "metadata": { "id": "V5NQ_N2t6Vzt" }, "execution_count": null, "outputs": [] } ], "metadata": { "accelerator": "GPU", "colab": { "provenance": [] }, "kernelspec": { "display_name": "Python 3", "name": "python3" }, "language_info": { "name": "python" }, "widgets": { "application/vnd.jupyter.widget-state+json": { 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