# Buildsheet autogenerated by ravenadm tool -- Do not edit. NAMEBASE= R VERSION= 4.2.0 KEYWORDS= math lang VARIANTS= standard SDESC[standard]= Statistical computing and graphics environment HOMEPAGE= https://www.r-project.org/ CONTACT= nobody DOWNLOAD_GROUPS= main SITES[main]= CRAN/src/base/R-4 DISTFILE[1]= R-4.2.0.tar.gz:main DF_INDEX= 1 SPKGS[standard]= complete primary nls docs OPTIONS_AVAILABLE= none OPTIONS_STANDARD= none BUILDRUN_DEPENDS= pcre2:primary:standard curl:primary:standard ghostscript:primary:standard icu:single:standard xz:single:standard USES= makeinfo readline perl:build libtool zlib gmake iconv png jpeg tiff pkgconfig tcl:tk gettext-runtime gettext-tools fortran:primary shebangfix ssl GNOME_COMPONENTS= cairo pango XORG_COMPONENTS= ice sm x11 xext xmu xscrnsaver xt LICENSE= GPLv2+:primary LICENSE_TERMS= primary:{{WRKDIR}}/TERMS LICENSE_FILE= GPLv2+:{{WRKSRC}}/COPYING LICENSE_AWK= TERMS:"HAVE_CONFIG_H" LICENSE_SOURCE= TERMS:{{WRKSRC}}/src/main/main.c LICENSE_SCHEME= solo INFO= primary:R-admin primary:R-data primary:R-exts primary:R-FAQ primary:R-intro primary:R-ints primary:R-lang FPC_EQUIVALENT= math/R INFO_SUBDIR= . SHEBANG_ADD_SH= src/scripts/BATCH src/scripts/COMPILE src/scripts/INSTALL src/scripts/LINK src/scripts/REMOVE src/scripts/Rd2pdf src/scripts/Rdconv src/scripts/Rdiff src/scripts/Rprof src/scripts/SHLIB src/scripts/Stangle src/scripts/Sweave src/scripts/build src/scripts/check src/scripts/config src/scripts/javareconf.in src/scripts/rtags.in MUST_CONFIGURE= gnu CONFIGURE_ARGS= --disable-java --with-readline --with-x --with-cairo --with-ICU --with-libpng --with-libtiff --with-jpeglib --with-tcltk --enable-R-shlib --enable-R-profiling --enable-BLAS-shlib --enable-long-double --enable-openmp --enable-nls --without-blas --without-lapack rdocdir={{STD_DOCDIR}} CONFIGURE_ENV= r_cv_header_jpeglib_h=yes INSTALL_TARGET= install-strip install-info INSTALL_REQ_TOOLCHAIN= yes SOVERSION= 4.2 LDFLAGS= -Wl,-rpath,{{PREFIX}}/lib/R/lib post-patch: ${REINPLACE_CMD} -e "s|/usr/local|${LOCALBASE}|g" \ ${WRKSRC}/configure ${REINPLACE_CMD} "s|%%LIBVER%%|4.2|" \ ${WRKSRC}/src/main/Makefile.in \ ${WRKSRC}/src/extra/blas/Makefile.in \ ${WRKSRC}/src/modules/lapack/Makefile.in post-install: ${REINPLACE_CMD} -i'' -e "s| -lR| -lR -lRblas|" \ ${STAGEDIR}${PREFIX}/lib/pkgconfig/libR.pc ${RM} ${STAGEDIR}${STD_DOCDIR}/COPY* ${RM} ${STAGEDIR}${PREFIX}/lib/R/COPY* [FILE:1028:descriptions/desc.primary] R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency. The R distribution contains functionality for a large number of statistical procedures. Among these are: linear and generalized linear models, nonlinear regression models, time series analysis, classical parametric and nonparametric tests, clustering and smoothing. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. Additional modules ("add-on packages") are available for a variety of specific purposes. 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splines.rdx lib/R/library/splines/help/ AnIndex aliases.rds paths.rds splines.rdb splines.rdx lib/R/library/splines/html/ 00Index.html R.css lib/R/library/splines/libs/splines.so lib/R/library/stats/ COPYRIGHTS.modreg DESCRIPTION INDEX NAMESPACE SOURCES.ts lib/R/library/stats/Meta/ Rd.rds demo.rds features.rds hsearch.rds links.rds nsInfo.rds package.rds lib/R/library/stats/R/ stats stats.rdb stats.rdx lib/R/library/stats/demo/ glm.vr.R lm.glm.R nlm.R smooth.R lib/R/library/stats/help/ AnIndex aliases.rds paths.rds stats.rdb stats.rdx lib/R/library/stats/html/ 00Index.html R.css lib/R/library/stats/libs/stats.so lib/R/library/stats4/ DESCRIPTION INDEX NAMESPACE lib/R/library/stats4/Meta/ Rd.rds features.rds hsearch.rds links.rds nsInfo.rds package.rds lib/R/library/stats4/R/ stats4 stats4.rdb stats4.rdx lib/R/library/stats4/help/ AnIndex aliases.rds paths.rds stats4.rdb stats4.rdx lib/R/library/stats4/html/ 00Index.html R.css lib/R/library/survival/ CITATION COPYRIGHTS DESCRIPTION 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DESCRIPTION INDEX NAMESPACE lib/R/library/tcltk/Meta/ Rd.rds demo.rds features.rds hsearch.rds links.rds nsInfo.rds package.rds lib/R/library/tcltk/R/ tcltk tcltk.rdb tcltk.rdx lib/R/library/tcltk/demo/ tkcanvas.R tkdensity.R tkfaq.R tkttest.R lib/R/library/tcltk/exec/ Tk-frontend.R console.tcl hierarchy.tcl pkgIndex.tcl progressbar.tcl util-dump.tcl util-expand.tcl util-number.tcl util-string.tcl util-tk.tcl util.tcl widget.tcl lib/R/library/tcltk/help/ AnIndex aliases.rds paths.rds tcltk.rdb tcltk.rdx lib/R/library/tcltk/html/ 00Index.html R.css lib/R/library/tcltk/libs/tcltk.so lib/R/library/tools/ DESCRIPTION INDEX NAMESPACE lib/R/library/tools/Meta/ Rd.rds features.rds hsearch.rds links.rds nsInfo.rds package.rds lib/R/library/tools/R/ sysdata.rdb sysdata.rdx tools tools.rdb tools.rdx lib/R/library/tools/help/ AnIndex aliases.rds paths.rds tools.rdb tools.rdx lib/R/library/tools/html/ 00Index.html R.css lib/R/library/tools/libs/tools.so lib/R/library/translations/DESCRIPTION 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KaTeX_Caligraphic-Bold.woff KaTeX_Caligraphic-Bold.woff2 KaTeX_Caligraphic-Regular.ttf KaTeX_Caligraphic-Regular.woff KaTeX_Caligraphic-Regular.woff2 KaTeX_Fraktur-Bold.ttf KaTeX_Fraktur-Bold.woff KaTeX_Fraktur-Bold.woff2 KaTeX_Fraktur-Regular.ttf KaTeX_Fraktur-Regular.woff KaTeX_Fraktur-Regular.woff2 KaTeX_Main-Bold.ttf KaTeX_Main-Bold.woff KaTeX_Main-Bold.woff2 KaTeX_Main-BoldItalic.ttf KaTeX_Main-BoldItalic.woff KaTeX_Main-BoldItalic.woff2 KaTeX_Main-Italic.ttf KaTeX_Main-Italic.woff KaTeX_Main-Italic.woff2 KaTeX_Main-Regular.ttf KaTeX_Main-Regular.woff KaTeX_Main-Regular.woff2 KaTeX_Math-BoldItalic.ttf KaTeX_Math-BoldItalic.woff KaTeX_Math-BoldItalic.woff2 KaTeX_Math-Italic.ttf KaTeX_Math-Italic.woff KaTeX_Math-Italic.woff2 KaTeX_SansSerif-Bold.ttf KaTeX_SansSerif-Bold.woff KaTeX_SansSerif-Bold.woff2 KaTeX_SansSerif-Italic.ttf KaTeX_SansSerif-Italic.woff KaTeX_SansSerif-Italic.woff2 KaTeX_SansSerif-Regular.ttf KaTeX_SansSerif-Regular.woff KaTeX_SansSerif-Regular.woff2 KaTeX_Script-Regular.ttf KaTeX_Script-Regular.woff KaTeX_Script-Regular.woff2 KaTeX_Size1-Regular.ttf KaTeX_Size1-Regular.woff KaTeX_Size1-Regular.woff2 KaTeX_Size2-Regular.ttf KaTeX_Size2-Regular.woff KaTeX_Size2-Regular.woff2 KaTeX_Size3-Regular.ttf KaTeX_Size3-Regular.woff KaTeX_Size3-Regular.woff2 KaTeX_Size4-Regular.ttf KaTeX_Size4-Regular.woff KaTeX_Size4-Regular.woff2 KaTeX_Typewriter-Regular.ttf KaTeX_Typewriter-Regular.woff KaTeX_Typewriter-Regular.woff2 share/doc/R/manual/ R-FAQ.html R-admin.html R-data.html R-exts.html R-intro.html R-ints.html R-lang.html share/doc/R/manual/images/ QQ.png ecdf.png fig11.png fig12.png hist.png ice.png [FILE:238:patches/patch-configure] --- configure.orig 2022-03-02 23:16:10 UTC +++ configure @@ -8530,6 +8530,7 @@ if test $ac_compiler_gnu = yes; then else GFC= fi +G77=yes ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' [FILE:221:patches/patch-m4_R.m4] --- m4/R.m4.orig 2022-01-13 23:15:00 UTC +++ m4/R.m4 @@ -4081,7 +4081,7 @@ case "${host_os}" in darwin*) R_SYSTEM_ABI="macos" ;; - freebsd*) + dragonfly*|freebsd*) R_SYSTEM_ABI="freebsd" ;; *) [FILE:1063:patches/patch-src_extra_blas_Makefile.in] --- src/extra/blas/Makefile.in.orig 2020-03-26 23:02:26 UTC +++ src/extra/blas/Makefile.in @@ -20,7 +20,7 @@ SOURCES = blas00.c blas.f cmplxblas.f @BUILD_LTO_CHECK_TRUE@Rblas_la = libRblas.a ## @RBLAS_LDFLAGS@ is used on macOS ## first for internal BLAS -Rblas_la_LIBADD = @RBLAS_LDFLAGS@ $(FLIBS_IN_SO) +Rblas_la_LIBADD = -Wl,-soname,libRblas.so.%%LIBVER%% $(FLIBS_IN_SO) ## then external one Rblas_la_LIBADD0 = @RBLAS_LDFLAGS@ @@ -45,6 +45,7 @@ Rblas_install: $(Rblas_la) @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)" @$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rblas_la) \ "$(DESTDIR)$(Rexeclibdir)/$(Rblas_la)" + @cd $(DESTDIR)$(Rexeclibdir) && ln -s $(Rblas_la) $(Rblas_la).%%LIBVER%% Rblas_install-strip: $(Rblas_la) @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)" @@ -52,6 +53,7 @@ Rblas_install-strip: $(Rblas_la) @if test -n "$(STRIP_SHARED_LIB)"; then \ $(STRIP_SHARED_LIB) "$(DESTDIR)$(Rexeclibdir)/$(Rblas_la)" ;\ fi + @cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(Rblas_la) $(Rblas_la).%%LIBVER%% mostlyclean: clean clean: [FILE:412:patches/patch-src_extra_intl_config.charset] --- src/extra/intl/config.charset.orig 2018-09-25 08:46:48 UTC +++ src/extra/intl/config.charset @@ -345,7 +345,7 @@ case "$os" in #echo "sun_eu_greek ?" # what is this? echo "UTF-8 UTF-8" ;; - freebsd* | os2*) + dragonfly* | freebsd* | os2*) # FreeBSD 4.2 doesn't have nl_langinfo(CODESET); therefore # localcharset.c falls back to using the full locale name # from the environment variables. [FILE:223:patches/patch-src_extra_tre_tre-internal.h] --- src/extra/tre/tre-internal.h.orig 2021-04-19 22:02:02 UTC +++ src/extra/tre/tre-internal.h @@ -18,6 +18,7 @@ #endif /* !HAVE_WCTYPE_H */ #include +#include #include "tre.h" #ifdef TRE_DEBUG [FILE:788:patches/patch-src_library_parallel_R_detectCores.R] --- src/library/parallel/R/detectCores.R.orig 2021-04-19 22:02:04 UTC +++ src/library/parallel/R/detectCores.R @@ -37,6 +37,7 @@ detectCores <- darwin = if(logical) "/usr/sbin/sysctl -n hw.logicalcpu 2>/dev/null" else "/usr/sbin/sysctl -n hw.physicalcpu 2>/dev/null", solaris = if(logical) "/usr/sbin/psrinfo -v | grep 'Status of.*processor' | wc -l" else "/bin/kstat -p -m cpu_info | grep :core_id | cut -f2 | uniq | wc -l", freebsd = "/sbin/sysctl -n hw.ncpu 2>/dev/null", + dragonfly = "/sbin/sysctl -n hw.ncpu 2>/dev/null", openbsd = "/sbin/sysctl -n hw.ncpuonline 2>/dev/null") nm <- names(systems) m <- pmatch(nm, R.version$os); m <- nm[!is.na(m)] [FILE:853:patches/patch-src_main_Makefile.in] --- src/main/Makefile.in.orig 2021-04-19 22:02:06 UTC +++ src/main/Makefile.in @@ -113,7 +113,7 @@ libR_la_LIBADD = $(MAIN_OBJS) $(EXTRA_S libR_la_DEPENDENCIES = $(STATIC_LIBS) $(R_TZONE) @WANT_R_SHLIB_TRUE@ @USE_EXPORTFILES_TRUE@ $(top_builddir)/etc/R.exp ## The next is needed for macOS only at present -LIBR_LDFLAGS = @LIBR_LDFLAGS@ +LIBR_LDFLAGS = -Wl,-soname,libR.so.%%LIBVER%% all: R @@ -203,6 +203,7 @@ install-bin: installdirs install-lib: installdirs @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)" @$(SHELL) $(top_srcdir)/tools/copy-if-change $(libR_la) "$(DESTDIR)$(Rexeclibdir)/$(libR_la)" + @cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(libR_la) $(libR_la).%%LIBVER%% install-static: installdirs @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)" @$(SHELL) $(top_srcdir)/tools/copy-if-change libR.a "$(DESTDIR)$(Rexeclibdir)/libR.a" [FILE:677:patches/patch-src_main_character.c] $NetBSD: patch-src_main_character.c,v 1.5 2021/06/13 13:10:47 wen Exp $ --- src/main/character.c.orig 2021-11-25 23:15:02 UTC +++ src/main/character.c @@ -1744,7 +1744,7 @@ SEXP attribute_hidden do_strtrim(SEXP ca return s; } -static int strtoi(SEXP s, int base) +static int my_strtoi(SEXP s, int base) { if(s == NA_STRING || CHAR(s)[0] == '\0') return(NA_INTEGER); @@ -1777,7 +1777,7 @@ SEXP attribute_hidden do_strtoi(SEXP cal PROTECT(ans = allocVector(INTSXP, n = LENGTH(x))); for(i = 0; i < n; i++) - INTEGER(ans)[i] = strtoi(STRING_ELT(x, i), base); + INTEGER(ans)[i] = my_strtoi(STRING_ELT(x, i), base); UNPROTECT(1); return ans; [FILE:635:patches/patch-src_main_complex.c] --- src/main/complex.c.orig 2020-03-26 23:02:22 UTC +++ src/main/complex.c @@ -139,7 +139,7 @@ static double complex mycpow (double com } else if (yi == 0.0 && yr == (k = (int) yr) && abs(k) <= 65536) Z = R_cpow_n(X, k); else -#ifdef HAVE_CPOW +#if defined(HAVE_CPOW) && !defined(__FreeBSD__) Z = cpow(X, Y); #else { @@ -394,7 +394,7 @@ void attribute_hidden z_prec_r(Rcomplex Currently (Feb 2011) they are used on FreeBSD. */ -#ifndef HAVE_CLOG +#if !defined(HAVE_CLOG) || defined(__FreeBSD__) #define clog R_clog /* FIXME: maybe add full IEC60559 support */ static double complex clog(double complex x) [FILE:374:patches/patch-src_main_printutils.c] --- src/main/printutils.c.orig 2021-07-02 22:15:02 UTC +++ src/main/printutils.c @@ -723,9 +723,6 @@ const char *EncodeString(SEXP s, int w, */ for(int j = 0; j < res; j++) *q++ = *p++; } else { -# if !defined (__STDC_ISO_10646__) && !defined (Win32) - Unicode_warning = TRUE; -# endif if(k > 0xffff) snprintf(buf, 13, "\\U{%06x}", k); else [FILE:1598:patches/patch-src_modules_lapack_Makefile.in] --- src/modules/lapack/Makefile.in.orig 2020-07-31 22:15:01 UTC +++ src/modules/lapack/Makefile.in @@ -87,17 +87,19 @@ $(lapack_la): $(lapack_la_OBJECTS) ## Include BLAS here, as with (static) ATLAS that pulls all the ## BLAS routines into one place. $(Rlapack_la): $(LIBOBJECTS) - @BUILD_LTO_CHECK_FALSE@$(DYLIB_LINK) -o $@ $(LIBOBJECTS) @RLAPACK_LDFLAGS@ @BLAS_LIBS@ $(Rlapack_la_LIBADD) + @BUILD_LTO_CHECK_FALSE@$(DYLIB_LINK) -o $@ $(LIBOBJECTS) -Wl,-soname,libRlapack.so.%%LIBVER%% @BLAS_LIBS@ $(Rlapack_la_LIBADD) @BUILD_LTO_CHECK_TRUE@$(AR) -cr $@ $(LIBOBJECTS) Rlapack_install: $(Rlapack_la) @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexeclibdir)" @$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rlapack_la) \ "$(Rexeclibdir)/$(Rlapack_la)" + @cd $(Rexeclibdir) && ln -s $(Rlapack_la) $(Rlapack_la).%%LIBVER%% install: installdirs @$(SHELL) $(top_srcdir)/tools/copy-if-change $(lapack_la) "$(DESTDIR)$(Rexecmodulesdir)/$(lapack_la)" -@USE_EXTERNAL_LAPACK_FALSE@ @$(SHELL) $(top_srcdir)/tools/copy-if-change $(Rlapack_la) "$(DESTDIR)$(Rexeclibdir)/$(Rlapack_la)" +@USE_EXTERNAL_LAPACK_FALSE@ @cd "$(DESTDIR)$(Rexeclibdir)" && ln -sf $(Rlapack_la) $(Rlapack_la).%%LIBVER%% + installdirs: @$(MKINSTALLDIRS) "$(DESTDIR)$(Rexecmodulesdir)" install-strip-Rlapack: @@ -110,6 +112,7 @@ install-strip: @USE_EXTERNAL_LAPACK_FALS @if test -n "$(STRIP_SHARED_LIB)"; then \ $(STRIP_SHARED_LIB) "$(DESTDIR)$(Rexecmodulesdir)/$(lapack_la)"; \ fi + @cd "$(DESTDIR)$(Rexeclibdir)" && ln -s $(Rlapack_la) $(Rlapack_la).%%LIBVER%% uninstall: @rm -f "$(Rexecmodulesdir)/$(lapack_la)"