[{:overview {:label "Overview", :opts {:order :row, :eltsper 1, :rgap "20px", :cgap "20px", :size "auto", :wrapfn {:tid :overview, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"200px\"]\n [md {:style {:width 900 :font-size \"25px\"}}\n\"\n# Overview\n\n* Hanami\n  * Short intro\n  * Template review with code examples\n  * Tab capability review\n  * Picture frame review\n\n* Saite\n  * Short history\n  * Basic current state\n  * Controls quick look\n  * Editor capabilities\n  * Server side support\n  * Publishing\n  * Format structure for docs(?)\n  * Futures / Road map\n\"]\n])", :out-height "100px", :eid "ed-overview", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "200px"] [md {:style {:font-size "25px", :width 900}} "\n# Overview\n\n* Hanami\n  * Short intro\n  * Template review with code examples\n  * Tab capability review\n  * Picture frame review\n\n* Saite\n  * Short history\n  * Basic current state\n  * Controls quick look\n  * Editor capabilities\n  * Server side support\n  * Publishing\n  * Format structure for docs(?)\n  * Futures / Road map\n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}}]}} {:hanami {:label "Hanami", :opts {:order :row, :eltsper 1, :rgap "20px", :cgap "20px", :size "auto", :wrapfn {:tid :hanami, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"200px\"]\n [md {:style {:width 900 :font-size \"25px\"}}\n\"\n# Hanami\n\n* Library \n  * Enables construction of vis apps on top of Vega and Vega-Lite\n    * Analogous to Shiny or Dash\n  * Server/Client, and Client only apps\n  * Template system\n    * Templates parameterized by *substitution keys*\n      * Abstract visualizations\n    * Recursively transformed into legal VG/VGL specs (and other...)\n    * Default set of templates (aerial.hanami.templates)\n    * Default set of substitution keys (aerial.hanami.common)\n    * General transformer `xform`\n    * Completely changeable to suite your wants/needs\n  * Simple potent messaging\n  * Reagent - Re-Com enabled\n\n* Framework\n  * Default header support\n  * Tab system\n  * Picture frames\n  * Session groups\n\"]\n])", :out-height "100px", :eid "ed-hanami", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "200px"] [md {:style {:font-size "25px", :width 900}} "\n# Hanami\n\n* Library \n  * Enables construction of vis apps on top of Vega and Vega-Lite\n    * Analogous to Shiny or Dash\n  * Server/Client, and Client only apps\n  * Template system\n    * Templates parameterized by *substitution keys*\n      * Abstract visualizations\n    * Recursively transformed into legal VG/VGL specs (and other...)\n    * Default set of templates (aerial.hanami.templates)\n    * Default set of substitution keys (aerial.hanami.common)\n    * General transformer `xform`\n    * Completely changeable to suite your wants/needs\n  * Simple potent messaging\n  * Reagent - Re-Com enabled\n\n* Framework\n  * Default header support\n  * Tab system\n  * Picture frames\n  * Session groups\n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}}]}} {:templates {:label "Templates", :opts {:order :row, :eltsper 1, :size "auto", :wrapfn {:tid :templates, :$split nil, :fn [quote editor-repl-tab], :layout :left-right, :ns aerial.saite.usercode, :width "730px", :src "\n;;; A walk through 'exercise' with templates, substitution keys and\n;;; transformations using them.\n\n;;; hc/xform is the general transformation function. It actually can work on any\n;;; nested set of collections. Typically the outer is a map, but need not be.\n;;; It has three signatures, one of which is variadic:\n;;; hc/xform [coll], hc/xform [coll submap], hc/xform [coll k v & kvs]\n\n;;; hc/get-default takes a key and returns its value in the default substitution\n;;; key map AKA 'submap'.  Or nil if not there\n\n;;; To execute the forms here, one by one, you can put the cursor on the outer\n;;; most right paren and use Ctrl-X Ctrl-E (like Cider eval last sexp). Or,\n;;; put the cursor somewhere in the sexp (even at the end) and use\n;;; Ctrl-X Ctrl-C (like Cider Ctrl-C Ctrl-C eval outer sexp)\n\n;;; uses only the default submap\n(hc/xform {:a :X})\n(hc/get-default :X)\n\n;;; Values given as k/v pairs override any in the default submap\n(hc/xform {:a :X} :X \"foo\")\n\n;;; Next, we first get {:a {:y :Y}}, which is then recursively transformed\n(hc/xform {:a :X} :X {:y :Y})\n(hc/get-default :Y)\n\n;;; If a value is neither in the default submap nor given as a k/v pair,\n;;; it is taken as the literal value\n(hc/xform {:a :Saite})\n(hc/get-default :Saite)\n;;; Again, giving it a value in the k/v pairs will use that value\n(hc/xform {:a :Saite} :Saite 12)\n(hc/get-default :FOO)\n(hc/xform {:a :FOO} :FOO #{1 2})\n\n;;; Here we see an example of the third transformation rule in action\n;;; (https://github.com/jsa-aerial/hanami#basic-transformation-rules)\n;;; {:a :FOO} --> {:a  #{}} --> {:a RMV} --> {}\n;;; hc/RMV is the special Specter value NONE, which when encountered\n;;; in a (Specter) transform means to remove the associated item.\n(hc/xform {:a :FOO} :FOO #{})\n\n;;; Many (most) default substitution key values are RMV. This is so the key\n;;; they are a value for will be removed from anywhere they appear, unless\n;;; a specific value is given for them.\n;;; {:a :FOO} --> {:a {:scale :XSCALE}} --> {:a {:scale RMV}} -->\n;;; {:a {}} --> {:a RMV} --> {}\n(hc/get-default :XSCALE)\n(hc/xform {:a :FOO} :FOO {:scale :XSCALE})\n\n;;; We can use the default data template fragment to show this basic idea in\n;;; action. The fragment has 4 items:\nht/data-options\n;;; Three of the associated substitution keys default to RMV\n(hc/get-default :NDATA)\n(hc/get-default :UDATA)\n(hc/get-default :DFMT)\n\n;;; :VALDATA is an interesting case as its default value is a function\n;;; (//github.com/jsa-aerial/hanami#function-values-for-substitution-keys)\n;;; This function looks up :FDATA and :DATA in the current submap passed to\n;;; it. If they are RMV, it returns RMV. hc/_defaults is the default submap.\n(hc/get-default :VALDATA)\n(hc/get-default :DATA)\n(hc/get-default :FDATA)\n((hc/get-default :VALDATA) @hc/_defaults)\n;;; If :DATA has a value it returns that.\n((hc/get-default :VALDATA) {:DATA [{\"one\" 1} {\"two\" 2} {\"three\" 3}]})\n\n;;; ON SERVER SIDE ONLY: If :FDATA has a value the :VALDATA function looks up \n;;; :FDATA's substitution key function\n;;; (https://github.com/jsa-aerial/hanami#subtitution-key-functions) and\n;;; passes it the value of :FDATA, and the current submap. This function will\n;;; resolve the value of :FDATA to a file (or error) and fetch its content.\n;;; On the client this always returns RMV. Place cursor at right paren.\n;;; Ctrl-X Ctrl-E runs on client. Ctrl-X J runs on server (will give file\n;;; not found error - unless you have a real json file there...)\n((hc/get-default :VALDATA)\n (merge @hc/_defaults {:FDATA \"~/.saite/Data/my-data.json\"}))\n\n\n;;; OK, after that diversion, back to how the third rule of xform and having\n;;; RMV for most defaults works in our favor in getting legal VG/VGL field\n;;; values while using very generic fragments in definitions. So, we can now\n;;; see that with just the defaults, all four items in data-options will\n;;; get RMV and so all four will be removed:\nht/data-options\n(hc/xform ht/data-options)\n;;; But if we give one a legal value we get a legal data field value\n(hc/xform ht/data-options :DATA [{\"one\" 1} {\"two\" 2} {\"three\" 3}])\n(hc/xform ht/data-options :UDATA \"data/cars.json\")\n;;; Yes, if you give more than one, you will get an ILLEGAL value. But then\n;;; you deserve what you get...\n\n\n;;; Because of this, we can just use hc/data-options as the default value of\n;;; the data field in a view (see Vega/Vega-Lite for information on views)\n;;; view-base is a fragment that is used in the definition of any view in\n;;; templates.\nht/view-base\n\n;;; As you see, there is a lot of stuff and most of it substitution keys which\n;;; themselves have a lot of stuff. Take :ENCODING for example\n(hc/get-default :ENCODING)\n\n;;; Again, a lot of stuff, most of it more substitution keys. But we are\n;;; bottoming out - _most_ of these have base values - many RMV. If we\n;;; transform this using just the defaults, we get a legal (default) encoding\n(hc/xform {:encoding :ENCODING})\n\n\n;;; Let's look at another pair in view-base, the :usermeta :USERDATA pair\n;;; The :usermeta field is a special field that the authors of VG/VGL (the\n;;; members of the Interactive Data Lab at UWash in Seattle) have included in\n;;; the schemas of VG and VGL. They understood user apps may want to encode\n;;; special data in a legal VG/VGL spec and this field supports that use\n;;; case. Generally, that data will be some form of _control_ data. That's\n;;; exactly how it is used in Saite. Out of the box, Hanami has :USERDATA\n;;; as RMV, so :usermeta will just be removed. But Saite gives it a value of\n;;; various control data.\n(hc/get-default :USERDATA)\n\n;;; Again, many values are substitution keys themselves with their own default\n;;; values.  :msgop and :session-name are really server things and don't\n;;; concern us when working via the client.  In the 'Tabs' tab and 'Gallery'\n;;; tab of this document, you will see values given for :LEFT, :TOP, :FID, :VID\n;;; which control how the associated picture frame and vis are displayed.\n(hc/xform (hc/get-default :USERDATA))\n\n\n;;; Now that we've seen :ENCODING and :USERDATA, let's go back to view-base and\n;;; see how these work to give a nearly complete Vega-Lite specification when\n;;; transformed. Put the cursor at the 'e' in view-base and Ctrl-X Ctrl-E to\n;;; get its value. Then use Ctrl-X Ctrl-C to get the transformed value.\n(hc/xform ht/view-base)\n;;; That's pretty close to being a legal view spec, but it doesn't have a data\n;;; value and so would throw an error in VGL. We can fix that by giving a\n;;; data source\n(hc/xform ht/view-base :UDATA \"data/cars.json\")\n\n;;; OK, the only thing left to get a legal spec is to add in a mark spec. Marks\n;;; basically define how VG/VGL render the view - line plot, scatter plot, bar\n;;; chart, area chart, etc etc. There are several out-of-box 'chart/plot'\n;;; templates that add a mark around view-base. Here are a couple. Put the\n;;; cursor at the end and Ctrl-X Ctrl-E. Notice the mark spec again has several\n;;; fields with substitution key values. Only the 'type' field is concrete.\nht/point-chart\nht/bar-chart\n\n;;; Now we are ready to get a complete legal Vega-Lite specification. We will\n;;; use the point-chart template which will give a scatter plot. So, we need\n;;; a data source and this one has it's x field as the string \"Horsepower\" and\n;;; its y field as \"Miles_per_Gallon\". That's all we really need, but to get\n;;; a nice color faceting, we also ask the \"Origin\" field be color faceted.\n;;; You can see this exact chart rendered in the 'Tabs' tab demo (where we\n;;; add frame and visual ids to control its placement in the doc body)\n(hc/xform\n ht/point-chart\n :UDATA \"data/cars.json\"\n :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")\n\n\n;;; We are pretty much at the end here. The last thing to cover concerns what\n;;; some have voiced a desire for - changing the default style of using\n;;; :UPPERCASE keywords for substitution keys. Nothing in any of the\n;;; transformation process requires this and you can make them be any style\n;;; or form you like. The following is a little exercise in how you can\n;;; automate that change\n;;; We already saw that hc/_defaults is the default submap. As you can see,\n;;; there are a lot of such default keys.\n(deref hc/_defaults)\n;;; We will need clojure.set and clojure.string for the exercise. Like any\n;;; form, requires can be evaluated. Just put the cursor on the right paren\n;;; like any other example, and Ctrl-X Ctrl-E these\n(require '[clojure.set :as set])\n(require '[clojure.string :as str])\n;;; We will turn our uppercase keys into lower case strings. mydefs is a map\n;;; from the uppercase keywords to their lower case strings. If you eval this\n;;; you will see the first (random) 10 cases. Comment the take out and\n;;; uncomment each xform in turn to see how the templates can be transformed\n;;; to use these lower case substitution keys.\n;;; This is just an example, more likely version would use namespace qualified\n;;; lowercase keywords.\n(let [mydefs (->> hc/_defaults deref\n               (mapv (fn[[k v]](vector (-> k name str/lower-case) k)))\n               (into {}) set/map-invert)]\n  (take 10 mydefs)\n  #_(hc/xform ht/view-base mydefs)\n  #_(hc/xform ht/point-chart mydefs))", :out-height "700px", :eid "ed-templates", :height "700px"}}, :specs []}} {:tabs {:label "Tabs", :opts {:order :row, :eltsper 1, :rgap "20px", :cgap "20px", :size "auto", :wrapfn {:tid :tabs, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"100px\"]\n [md {:style {:width 900 :font-size \"25px\"}}\n\"\n# Tabs\n\n* Auto structuring of document by sections, chapters, or pages\n  * Conceptually, each tab corresponds to one of these in the doc\n\n* Tab bodies can be further structured into columns and rows\n  * Each row or column has an element count to auto control layout\n  * An *element* is a *picture frame* (next up...)\n  * *Wrapping functions* support embedding bodies in app specific controls or other layout\n    * Examples: Saite interactive editor and doc tabs \n\n* *Extension tabs* are tabs whose body is user defined / app specific\n  * Intended to let developer use tabs but with their own layouts\n  * **note** tabs will still auto-render when moving among them\n  * Example: Saite convert tab\n  \n\"]\n        ])\n\n\n;;; For this 'demo' it is a good idea to set the default height and\n;;; width of visualiztions to smaller values than the out-of-box\n;;; defaults.  First save the out of box versions in case you want\n;;; to quickly restore\n(def prevhw [(hc/get-default :HEIGHT) (hc/get-default :WIDTH)])\n;;; This one will restore them\n(hc/update-defaults :HEIGHT (first prevhw) :WIDTH (last prevhw))\n\n;;; Now set them to nicer values for this demo tab\n(hc/update-defaults :HEIGHT 200 :WIDTH 250)\n\n\n;;; For the following, you can place the cursor in the form and\n;;; use Ctrl-X Ctrl-I (or Insert) to insert the defined picture\n;;; frame. If the picture is already showing, with the cursor\n;;; again in the form, use Ctr-X Ctrl-D (or Delete) to delete it.\n\n;;; Also, if you select a form and cut it (Alt-W), if the picture was\n;;; showing it will also be cut. When you yank the cut form (Ctrl-Y)\n;;; the picture will be inserted - in the correct relative position\n;;; as the code to the other forms.\n\n;;; Additionally you can click the pencil icon (Edit current tab) and\n;;; fool around with the ordering, elements (picframes) per row/col\n;;; and the gapping.\n\n(hc/xform\n ht/point-chart :FID :f2 :VID :v2\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :UDATA \"data/cars.json\"\n :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")\n\n(hc/xform\n ht/bar-chart :FID :f3 :VID :v3\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :UDATA \"data/cars.json\"  :XBIN true :YAGG :mean\n :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")\n\n(hc/xform\n ht/line-chart :FID :f4 :VID :v4\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :UDATA \"data/cars.json\" :XBIN true :YAGG :mean\n :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")\n\n(hc/xform\n ht/layer-chart :FID :f5 :VID :v5\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :UDATA \"data/cars.json\"\n :LAYER [(hc/xform\n          ht/point-chart :FID :f2 :VID :v2 :OPACITY 0.3\n          :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")\n         (hc/xform\n          ht/line-chart :XBIN true :YAGG :mean\n          :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")])\n\n(hc/xform\n ht/line-chart :FID :f6 :VID :v6\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :UDATA \"data/cars.json\" \n :X \"Horsepower\" :Y \"Miles_per_Gallon\" \n :COLOR \"Origin\" ;:SHAPE \"Origin\"\n :COLDEF {:field \"Origin\"})\n", :out-height "100px", :eid "ed-tabs", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "100px"] [md {:style {:font-size "25px", :width 900}} "\n# Tabs\n\n* Auto structuring of document by sections, chapters, or pages\n  * Conceptually, each tab corresponds to one of these in the doc\n\n* Tab bodies can be further structured into columns and rows\n  * Each row or column has an element count to auto control layout\n  * An *element* is a *picture frame* (next up...)\n  * *Wrapping functions* support embedding bodies in app specific controls or other layout\n    * Examples: Saite interactive editor and doc tabs \n\n* *Extension tabs* are tabs whose body is user defined / app specific\n  * Intended to let developer use tabs but with their own layouts\n  * **note** tabs will still auto-render when moving among them\n  * Example: Saite convert tab\n  \n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}}]}} {:pframes {:label "Picture Frames", :opts {:order :row, :eltsper 1, :rgap "20px", :cgap "20px", :size "auto", :wrapfn {:tid :pframes, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"100px\"]\n [md {:style {:width 900 :font-size \"25px\"}}\n\"\n# Picture Frames\n\n* Basic element for tab bodies\n  * Composed of five parts\n    * Top, Bottom, Left, Right frame panels; central visualization\n\n![img](https://github.com/jsa-aerial/hanami/blob/master/resources/public/images/picture-frame-layout.png?raw=true)\n\n* Each part is optional, but at least one must be present\n  * Frames without a visualization part are called 'empty frames'\n\n* Each frame panel can be hiccup, re-com components, and/or Mark Down\n  * In Saite, MD can include LaTex\n\n* Frame definitions are included in the `usermeta` data\n\n* Frames can (should) have frame IDs and visualization IDs\n  * Substitution keys :FID and :VID\n* Frames may be added in 'bulk' or (as in Saite interactive tabs) added incrementally\n\n* Panel parts, in particular the vis, may be updated independently\n\n# Examples:\n\"]\n])\n\n(hc/xform\n ht/empty-chart :FID :f2\n :TOP '[[gap :size \"200px\"]\n        [md {:style {:font-size \"16px\"}}\"Empty with **top** (this)\"]]\n :LEFT '[[gap :size \"50px\"]\n         [md {:style {:font-size \"16px\"}} \"**Left** panel text\"]]\n :RIGHT '[[md {:style {:font-size \"16px\"}} \"**Right** panel text\"]]\n :BOTTOM '[[gap :size \"200px\"]\n           [md {:style {:font-size \"16px\"}} \"**Bottom** panel text\"]])\n\n(hc/xform\n ht/empty-chart :FID :f3\n \n :LEFT '[[gap :size \"50px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Two column format **left column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus.\"]]\n :RIGHT '[[gap :size \"50px\"]\n          [md {:style {:font-size \"16px\"}}\n           \"Two column format **right column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus.\"]]\n  )\n\n(hc/xform\n ht/point-chart :FID :f4 :VID :v4\n :UDATA \"data/cars.json\"\n :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\"\n :LEFT '[[gap :size \"50px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Two column format with vis **left column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus.\"]\n         [gap :size \"10px\"]\n         [p {:style {:width \"50px\" :min-width \"10px\"}} \"\"]]\n :RIGHT '[[gap :size \"10px\"]\n          [md {:style {:font-size \"16px\"}}\n           \"Two column format with vis **right column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus.\"]]\n  )\n\n(hc/xform\n ht/point-chart :FID :f5 :VID :v5\n :UDATA \"data/cars.json\"\n :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\"\n :LEFT '[[gap :size \"50px\"][p {:style {:width \"50px\" :min-width \"50px\"}}]]\n :TOP '[[gap :size \"50px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Top bottom with vis **Top** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus.\"]\n         [gap :size \"10px\"]\n         [p {:style {:width \"50px\" :min-width \"10px\"}} \"\"]]\n :BOTTOM '[[gap :size \"50px\"]\n          [md {:style {:font-size \"16px\"}}\n           \"Top bottom with vis **Bottom** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus.\"]]\n  )", :out-height "100px", :eid "ed-pframes", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "100px"] [md {:style {:font-size "25px", :width 900}} "\n# Picture Frames\n\n* Basic element for tab bodies\n  * Composed of five parts\n    * Top, Bottom, Left, Right frame panels; central visualization\n\n![img](https://github.com/jsa-aerial/hanami/blob/master/resources/public/images/picture-frame-layout.png?raw=true)\n\n* Each part is optional, but at least one must be present\n  * Frames without a visualization part are called 'empty frames'\n\n* Each frame panel can be hiccup, re-com components, and/or Mark Down\n  * In Saite, MD can include LaTex\n\n* Frame definitions are included in the `usermeta` data\n\n* Frames can (should) have frame IDs and visualization IDs\n  * Substitution keys :FID and :VID\n* Frames may be added in 'bulk' or (as in Saite interactive tabs) added incrementally\n\n* Panel parts, in particular the vis, may be updated independently\n\n# Examples:\n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}} {:usermeta {:frame {:bottom [[gap :size "200px"] [md {:style {:font-size "16px"}} "**Bottom** panel text"]], :top [[gap :size "200px"] [md {:style {:font-size "16px"}} "Empty with **top** (this)"]], :pos :after, :at :end, :right [[md {:style {:font-size "16px"}} "**Right** panel text"]], :fid :f2, :left [[gap :size "50px"] [md {:style {:font-size "16px"}} "**Left** panel text"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}} {:usermeta {:frame {:pos :after, :at :end, :right [[gap :size "50px"] [md {:style {:font-size "16px"}} "Two column format **right column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus."]], :fid :f3, :left [[gap :size "50px"] [md {:style {:font-size "16px"}} "Two column format **left column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus."]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}} {:encoding {:y {:field "Miles_per_Gallon", :type "quantitative"}, :color {:field "Origin", :type "nominal"}, :x {:field "Horsepower", :type "quantitative"}, :tooltip [{:field "Horsepower", :type "quantitative"} {:field "Miles_per_Gallon", :type "quantitative"}]}, :usermeta {:frame {:pos :after, :at :end, :right [[gap :size "10px"] [md {:style {:font-size "16px"}} "Two column format with vis **right column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus."]], :fid :f4, :left [[gap :size "50px"] [md {:style {:font-size "16px"}} "Two column format with vis **left column** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus."] [gap :size "10px"] [p {:style {:min-width "10px", :width "50px"}} ""]]}, :vid :v4, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}, :mark {:type "circle"}, :width 250, :background "floralwhite", :height 200, :data {:url "data/cars.json"}} {:encoding {:y {:field "Miles_per_Gallon", :type "quantitative"}, :color {:field "Origin", :type "nominal"}, :x {:field "Horsepower", :type "quantitative"}, :tooltip [{:field "Horsepower", :type "quantitative"} {:field "Miles_per_Gallon", :type "quantitative"}]}, :usermeta {:frame {:bottom [[gap :size "50px"] [md {:style {:font-size "16px"}} "Top bottom with vis **Bottom** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus."]], :top [[gap :size "50px"] [md {:style {:font-size "16px"}} "Top bottom with vis **Top** Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Quod si ita est, sequitur id ipsum, quod te velle video, omnes semper beatos esse sapientes. Tamen a proposito, inquam, aberramus."] [gap :size "10px"] [p {:style {:min-width "10px", :width "50px"}} ""]], :pos :after, :at :end, :fid :f5, :left [[gap :size "50px"] [p {:style {:min-width "50px", :width "50px"}}]]}, :vid :v5, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}, :mark {:type "circle"}, :width 250, :background "floralwhite", :height 200, :data {:url "data/cars.json"}}]}} {:saite {:label "Saite", :opts {:order :row, :eltsper 1, :rgap "20px", :cgap "20px", :size "auto", :wrapfn {:tid :saite, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"200px\"]\n [md {:style {:width 900 :font-size \"25px\"}}\n\"\n# Saite\n\n* History synopsis \n  * Originally just a cleaned up variant of the many 'server push to client' libs\n    * message system Hanasu much simpler and clean yet very potent\n  * Highly repetitive visualizations - how to fix?\n    * Functions? Methods? Protocols? ???\n    * Everything is just data - leverage that ... *templates*\n  * Highly repetive layouts\n    * Why am I writing the same / similar hiccup?\n    * Apps typically need two levels of organization - 'pages' and page bodies\n    * Tab system with auto body layout\n  * Why can't I have nice integrated external controls?\n    * Re-Com and app level extensions\n  * OK, is this an app or a lib???\n    * Split - Hanami lib parts; Saite application using that\n  * Hmmm why can't I have LaTex. And editors? And save / restore, and ...\n\"]\n])", :out-height "100px", :eid "ed-saite", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "200px"] [md {:style {:font-size "25px", :width 900}} "\n# Saite\n\n* History synopsis \n  * Originally just a cleaned up variant of the many 'server push to client' libs\n    * message system Hanasu much simpler and clean yet very potent\n  * Highly repetitive visualizations - how to fix?\n    * Functions? Methods? Protocols? ???\n    * Everything is just data - leverage that ... *templates*\n  * Highly repetive layouts\n    * Why am I writing the same / similar hiccup?\n    * Apps typically need two levels of organization - 'pages' and page bodies\n    * Tab system with auto body layout\n  * Why can't I have nice integrated external controls?\n    * Re-Com and app level extensions\n  * OK, is this an app or a lib???\n    * Split - Hanami lib parts; Saite application using that\n  * Hmmm why can't I have LaTex. And editors? And save / restore, and ...\n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}}]}} {:saite2 {:label "Saite current", :opts {:order :row, :eltsper 1, :rgap "20px", :cgap "20px", :size "auto", :wrapfn {:tid :saite2, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"200px\"]\n [md {:style {:width 900 :font-size \"23px\"}}\n\"\n# Saite Current State (more or less...)\n\n  * Starting to settle, but sill changing\n  * Picture frame panels may be editors for the central vis\n  * Editor enabled 'interactive' tabs\n    * Basic 'repl' type\n    * Interactive 'document' type\n    * Namespace per tab (but can span tabs)\n  * Save / restore\n    * it's all just data\n    * can restore from URL - publish (gists, github, github pages, etc etc)\n  * Interactive tab manipulation controls\n  * Configuration / customization (~/.saite/config.edn)\n    * editor (default is emacs, but can be sublime or vim)\n    * editor key bindings for nav / eval (default cider...)\n    * Doc and Data locations\n    * etc\n  * Various server side support evolving\n    * read from files (check!)\n    * server side eval (check!)\n    * mix server code and client code (check! - see 'Gallery' tab!)\n    * auto sync of namespaces (check! - with implicit requires)\n    * etc, etc\n\"]\n])", :out-height "100px", :eid "ed-saite2", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "200px"] [md {:style {:font-size "23px", :width 900}} "\n# Saite Current State (more or less...)\n\n  * Starting to settle, but sill changing\n  * Picture frame panels may be editors for the central vis\n  * Editor enabled 'interactive' tabs\n    * Basic 'repl' type\n    * Interactive 'document' type\n    * Namespace per tab (but can span tabs)\n  * Save / restore\n    * it's all just data\n    * can restore from URL - publish (gists, github, github pages, etc etc)\n  * Interactive tab manipulation controls\n  * Configuration / customization (~/.saite/config.edn)\n    * editor (default is emacs, but can be sublime or vim)\n    * editor key bindings for nav / eval (default cider...)\n    * Doc and Data locations\n    * etc\n  * Various server side support evolving\n    * read from files (check!)\n    * server side eval (check!)\n    * mix server code and client code (check! - see 'Gallery' tab!)\n    * auto sync of namespaces (check! - with implicit requires)\n    * etc, etc\n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :rgap "20px", :cgap "20px", :order :row}}}}]}} {:saite3 {:label "Saite Future/Road map", :opts {:order :row, :eltsper 1, :rgap "20px", :cgap "20px", :size "auto", :wrapfn {:tid :saite3, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"200px\"]\n [md {:style {:width 900 :font-size \"20px\"}}\n\"\n# Saite Future / Road Map (in no particular order)\n\n  * Much more editor stuff\n    * sexp slurp and spit for sure\n    * other editors - Vim and Sublime\n  * Block 'MD' support\n    * What and how?\n    * **No longer sure this is good or relevant**\n  * Integrate Neanderthal and Panthera\n    * These are definitely needed and **high priority**\n    * Turnkey support (include MKL libs)\n  * Other language support\n    * Python\n      * PyHanasu\n      * Maybe no longer relevant with Panthera??\n    * R\n      * Depends on R-Interop (Daniel, Chris) or RHanasu??\n  * Cytoscape\n    * Needed for *sophisticated* interactive graphs\n    * Not really in Vega's scope\n  * Other vis libs integration??\n  * Full self installing JAR (with PREPL or NREPL support)\n    * Almost - not yet full self installing but executable available:\n  `wget  http://bioinformatics.bc.edu/~jsa/aerial.aerosaite-0.2.5-standalone.jar`\n  \n\"]\n])", :out-height "100px", :eid "ed-saite3", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "200px"] [md {:style {:font-size "20px", :width 900}} "\n# Saite Future / Road Map (in no particular order)\n\n  * Much more editor stuff\n    * sexp slurp and spit for sure\n    * other editors - Vim and Sublime\n  * Block 'MD' support\n    * What and how?\n    * **No longer sure this is good or relevant**\n  * Integrate Neanderthal and Panthera\n    * These are definitely needed and **high priority**\n    * Turnkey support (include MKL libs)\n  * Other language support\n    * Python\n      * PyHanasu\n      * Maybe no longer relevant with Panthera??\n    * R\n      * Depends on R-Interop (Daniel, Chris) or RHanasu??\n  * Cytoscape\n    * Needed for *sophisticated* interactive graphs\n    * Not really in Vega's scope\n  * Other vis libs integration??\n  * Full self installing JAR (with PREPL or NREPL support)\n    * Almost - not yet full self installing but executable available:\n  `wget  http://bioinformatics.bc.edu/~jsa/aerial.aerosaite-0.2.5-standalone.jar`\n  \n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :rgap "20px", :cgap "20px", :order :row}}}}]}} {:gallery {:label "Gallery", :opts {:order :row, :eltsper 2, :rgap "80px", :cgap "20px", :size "auto", :wrapfn {:tid :gallery, :$split 0, :fn [quote interactive-doc-tab], :ns aerial.saite.usercode, :width "730px", :src "\n\n(hc/xform\n ht/empty-chart :FID :f1\n :LEFT '[\n [gap :size \"100px\"]\n [md {:style {:width 900 :font-size \"25px\"}}\n\"\n# A Gallery of various visualizations and MD / LaTex\n  Open the editor pane to see code and/or mess with it\n\"]])\n\n;;; This is empty with empty left frame. It's just a place holder to use up\n;;; the second slot in the first row...\n(hc/xform\n ht/empty-chart :FID :f1b\n :LEFT '[[gap :size \"100px\"][md {:style {:width 900 :font-size \"25px\"}} \"\"]])\n\n\n\n;;; Save current default H and W\n(def prevhw [(hc/get-default :HEIGHT) (hc/get-default :WIDTH)])\n;;; Set smaller values if desired\n(hc/update-defaults :HEIGHT 200 :WIDTH 250)\n;;; Restore if wanted\n(hc/update-defaults :HEIGHT (first prevhw) :WIDTH (last prevhw))\n\n\n;;; **************************************************************************\n;;; OK, NOTE, IF YOU WANT TO FOLLOW ALONG MAKING THE ELEMENTS ACCORDING TO THE\n;;; RUNNING COMMENTARY IN THE COMMENTS, YOU WILL FIRST WANT TO REMOVE ALL THE\n;;; PICFRAMES. THE EASIEST AND QUICKEST WAY TO DO THAT IS TO CLICK THE\n;;; \"Delete Frames\" button (dark with '-' inside). Select F2 through F15. DO\n;;; NOT SELECT F1 or F1b!! Click the 'check'/OK button. F2 through F15 will be\n;;; removed.\n;;; **************************************************************************\n\n\n;;; We are in row ording here with 2 elements (picframes) per row.\n;;; So every 2 in the following are a row.\n\n;;;The first two are pretty boring - you've seen them before\n(hc/xform\n ht/layer-chart :FID :f2 :VID :v2\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Layers - scatter with opacity 0.3; smoothed trend lines\"]]\n :UDATA \"data/cars.json\"\n :LAYER [(hc/xform\n          ht/point-chart :FID :f2 :VID :v2 :OPACITY 0.3\n          :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")\n         (hc/xform\n          ht/line-chart :XBIN true :YAGG :mean\n          :X \"Horsepower\" :Y \"Miles_per_Gallon\" :COLOR \"Origin\")])\n\n\n(hc/xform\n ht/line-chart :FID :f3 :VID :v3\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Smoothed faceted line plot\"]]\n :UDATA \"data/cars.json\" :XBIN true :YAGG :mean\n :HEIGHT 200 :WIDTH 250\n :X \"Horsepower\" :Y \"Miles_per_Gallon\" \n :COLOR \"Origin\" ;:SHAPE \"Origin\" \n :COLDEF {:field \"Origin\"})\n\n\n\n\n;;; Slightly more interesting since it uses a Vega template\n;;; Note :MODE...\n(hc/xform\n ht/contour-plot :MODE \"vega\" :FID :f4 :VID :v4\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Contour plot - notice: **mode** is Vega\"]]\n ;:HEIGHT 400, :WIDTH 500\n :X \"Horsepower\", :XTITLE \"Engine Horsepower\"\n :Y \"Miles_per_Gallon\" :YTITLE \"Miles/Gallon\"\n :UDATA \"data/cars.json\"\n :XFORM-EXPR #(let [d1 (% :X)\n                    d2 (% :Y)]\n                (format \"datum['%s'] != null && datum['%s'] !=null\" d1 d2)))\n\n\n;;; For this next one, we need to run some code.\n;;; First, run this on the JVM to define it there!\n;;; Place cursor somewhere in the code and use Ctrl-X-Ctrl-J\n;;; (Run outer sexpr on JVM. This is like cider Ctrl-C Ctrl-C execute outer\n;;; sexpression)\n;;; Normally, this sort of stuff would be in a separate 'code' tab\n(defn roundit [r & {:keys [places] :or {places 4}}]\n  (let [n (Math/pow 10.0 places)]\n    (-> r (* n) Math/round (/ n))))\n\n;;; OK, you can now run this with Ctrl-X-Ctrl-C. It will perform computation\n;;; On the JVM and set the _client_ var `data` to the result\n;;; Again, this would likely be in the same separate 'code' tab\n(def data (clj (->> (range 0.001 100.0 0.1)\n                 (mapv #(do {:x (roundit %)\n                             :y (-> % Math/sqrt roundit)})))))\n(count data) ; Put cursor at right paren and Ctrl-X-Ctrl-E to get count\n\n;;; OK, now we can vis this with some LaTex - use Ctrl-X Ctrl-I (or Insert)\n(hc/xform\n ht/line-chart :FID :f5 :VID :v5\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"200px\"]\n         [p {:style {:font-size \"16px\"}}\n          \"Simple plot with LaTex: \\\\(f(x) = \\\\sqrt x\\\\)\"]]\n :DATA data)\n\n\n\n\n;;; The next two are area charts. Both are basically from the VGL gallery\n;;; But here we do them with some of the out-of-box templates\n(hc/xform\n ht/vconcat-chart :FID :f6 :VID :v6\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:width \"600px\":font-size \"16px\"}}\n          \"Simple Overview + Detail example. Left mouse down in lower for brush\"]]\n :UDATA \"data/sp500.csv\",\n :VCONCAT \n [(hc/xform\n   ht/area-chart :WIDTH 500 :HEIGHT 200\n   :X :date, :Y :price :XTYPE :temporal, :XSCALE {:domain {:selection :brush}})\n  (hc/xform\n   ht/area-chart :WIDTH 500 :HEIGHT 60,\n   :SELECTION {:brush {:type :interval, :encodings [:x]}},\n   :X :date :XTYPE :temporal\n   :Y :price, :YAXIS {:tickCount 3, :grid false})])\n\n\n(hc/xform\n ht/area-chart :FID :f7 :VID :v7\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Simple area chart using series color scheme\"]]\n :UDATA  \"data/unemployment-across-industries.json\"\n :TOOLTIP RMV\n :X :date, :XTYPE :temporal, :XUNIT :yearmonth, :XFORMAT \"%Y\"\n :Y \"count\" :AGG \"sum\"\n :COLOR {:field \"series\", :type \"nominal\",\n         :scale {:scheme \"category20b\"}})\n\n\n\n\n;;; For the next two, we build a couple 'geo-templates'. So, this is also a bit\n;;; of an example of how to go about makeing a new vis abstraction with the\n;;; template system. The first is better than the second, but both could use\n;;; more abstraction.\n;;;\n;;; Need geo-encoding which is quite different from default encoding. Do this\n;;; by adding some new default substitution keys.\n(hc/update-defaults\n :GTTFIELD \"name\" :GTTTYPE \"nominal\"\n :PROJECTION {:type \"albersUsa\"}\n :GEOENCODING\n {:longitude {:field \"longitude\", :type \"quantitative\"},\n  :latitude {:field \"latitude\", :type \"quantitative\"},\n  :tooltip [{:field :GTTFIELD, :type :GTTTYPE}\n            {:field \"longitude\", :type \"quantitative\"}\n            {:field \"latitude\", :type \"quantitative\"}],\n  :size :SIZE})\n;;; Define the template, note we override std encoding in view-base\n(def geo-chart\n  (assoc ht/view-base :mark \"circle\" :projection :PROJECTION\n         :encoding :GEOENCODING\n         :config {:view {:stroke \"transparent\"}}))\n\n(hc/xform\n geo-chart :FID :f8 :VID :v8\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Geo chart using new geo template (see code)\"]]\n :SIZE {:value 10} :HEIGHT 300 :WIDTH 500\n :UDATA \"data/airports.csv\")\n\n\n;;; Vars for some global urls...\n;;; Put cursor at right paren and 'Ctrl-X Ctrl-E' them...\n(def vgdata-base\n  \"https://raw.githubusercontent.com/vega/vega-datasets/master/data/\")\n(def us-10m (str vgdata-base \"us-10m.json\"))\n(def unemployment (str vgdata-base \"unemployment.tsv\"))\n\n;;; Not a very good template - needs more and better abstraction...\n(def geo-choro\n  (assoc ht/view-base :mark \"geoshape\" :projection :PROJECTION))\n;;; Using the geo-choro hack....\n;;; In particular, the 'transform' here needs to be abstracted. The 'raw'\n;;; VGL form is _really_ easy to mess up!!!\n(hc/xform\n geo-choro :FID :f9 :VID :v9\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Geo chart using geo-choro template (see code)\"]]\n :UDATA us-10m :DFMT {:type \"topojson\", :feature \"counties\"}\n :WIDTH 500 :HEIGHT 300\n :TRANSFORM [{:lookup \"id\"\n              :from {:data {:url unemployment} :key \"id\", :fields [\"rate\"]}}]\n :ENCODING {:color {:field \"rate\", :type \"quantitative\"}})\n\n\n\n\n;;; In the next two, we mix server side computation with client side rendering\n;;; of the computation result.\n;;;\n;;; Use Ctrl-X Ctrl-C to execute the actual form; results in output area\n;;;\n;;; Use Ctrl-X Ctrl-I or Insert to insert the vis of that computation\n;;; Use Ctrl-X Ctrl-D or Delete to remove vis\n(hc/xform\n ht/layer-chart :FID :f10 :VID :v10\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [p {:style {:font-size \"16px\"}}\n          \"SI: \\\\(I(X) = -logP(X) = log(\\\\frac {1} {p})= -log(p)\\\\)\"]]\n :TITLE \"Self Information (unexpectedness)\"\n :LAYER [(hc/xform ht/xrule-layer :AGG \"mean\")\n         (hc/xform ht/line-layer\n                   :XTITLE \"Probability of event\"\n                   :YTITLE \"-log(p)\")]\n :DATA (clj (->> (range 0.005 0.999 0.001)\n              (mapv (fn[p] {:x p, :y (- (m/log2 p)) :col \"SI\"})))))\n\n(hc/xform\n ht/layer-chart :FID :f11 :VID :v11\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [p {:style {:width \"600px\" :font-size \"16px\"}}\n          \"Entropy: \\\\(H(X) = E[I(X)] = E[-log P(X)] = -\\\\sum\\\\limits_{i=1}^n P(x_i) log P(x_i)\\\\)\"]]\n :TITLE \"Entropy (Unpredictability)\"\n :LAYER [(hc/xform ht/gen-encode-layer\n                   :MARK \"line\"\n                   :XTITLE \"Probability of event\" :YTITLE \"H(p)\")\n         (hc/xform ht/xrule-layer :AGG \"mean\")]\n :DATA (clj (->> (range 0.00005 0.9999 0.001)\n              (mapv (fn[p] {:x p,\n                            :y (- (- (* p (m/log2 p)))\n                                  (* (- 1 p) (m/log2 (- 1 p))))})))))\n\n\n\n\n;;; Run this on server and set _client_ obsdist to the same value. So, both\n;;; the server and the client (in this namespace) have var `obsdist` defined.\n;;; This will be our supposed 'real observed' distribution in the following\n;;; Use Ctrl-X Ctrl-C\n(def obsdist\n  (clj (def obsdist\n         (let [obs [[0 9] [1 78] [2 305] [3 752] [4 1150] [5 1166]\n                    [6 899] [7 460] [8 644] [9 533] [10 504]]\n               totcnt (->> obs (mapv second) (apply +))\n               pdist (map (fn[[k cnt]] [k (double (/ cnt totcnt))]) obs)]\n           pdist))))\n\n\n;;; These two show how you can use relative entropy to zero in on a\n;;; correct (binomial) model of an observed distribution\n(hc/xform\n ht/line-chart :FID :f12 :VID :v12\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"150px\"]\n         [p {:style {:width \"600px\" :font-size \"16px\"}}\n          \"\\\\(KLD(P \\\\Vert Q) = \\\\sum\\\\limits_{x \\\\in X} P(x) log \\\\frac {Q(x)}{P(x)}\\\\)\"]]\n :POINT true\n :TITLE \"KLD minimum entropy: True P to Binomial Q estimate\"\n :XTITLE \"Binomial Distribution P paramter\"\n :YTITLE \"KLD(P||Q)\"\n :DATA (clj (mapv #(let [RE (it/KLD (->> obsdist (into {}))\n                                    (->> (p/binomial-dist 10 %)\n                                      (into {})))\n                         REtt (roundit RE)\n                         ptt (roundit % :places 2)]\n                     {:x % :y RE})\n                  (range 0.06 0.98 0.01))))\n\n(hc/xform\n ht/line-chart :FID :f13 :VID :v13\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [p {:style {:width \"600px\" :font-size \"16px\"}}\n          \"\\\\(JSD(P \\\\Vert Q) = \\\\frac{1}{2} KLD(P \\\\Vert M) + \\\\frac{1}{2} KLD(Q \\\\Vert M), M = \\\\frac{1}{2}(P + Q) \\\\)\"]]\n :POINT true\n :TITLE \"JSD minimum entropy: True P to Binomial Q estimate\"\n :XTITLE \"Binomial Distribution P paramter\"\n :YTITLE \"JSD(P||Q)\"\n :DATA (clj (mapv #(let [RE (it/jensen-shannon\n                             (->> obsdist (into {}))\n                             (->> (p/binomial-dist 10 %)\n                               (into {})))\n                         REtt (roundit RE)\n                         ptt (roundit % :places 2)]\n                     {:x % :y RE})\n                  (range 0.06 0.98 0.01))))\n\n\n\n;;; That's nice, but neither of those is a true metric. JSD is close as it is\n;;; symmetric and positive-definite. It's also nicely bounded [0,1] when base\n;;; 2 log is used. But it doesn't satisfy the triangle property.\n;;; However, not too long ago, two independent researchers showed that the\n;;; sqrt(JSD) is a metric. That's amazingly useful as this version can be\n;;; used for true distances - for example in metric trees\n(hc/xform\n ht/line-chart :FID :f14 :VID :v14\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"150px\"]\n         [p {:style {:width \"600px\" :font-size \"16px\"}}\n          \"\\\\(\\\\sqrt{JSD(P \\\\Vert Q)}\\\\), a relative entropy based metric\"]]\n :POINT true\n :TITLE \"SQRT(JSD) minimum entropy: True P to Binomial Q estimate\"\n :XTITLE \"Binomial Distribution P paramter\"\n :YTITLE \"JSD(P||Q)\"\n :DATA (clj (mapv #(let [RE (Math/sqrt\n                             (it/jensen-shannon\n                              (->> obsdist (into {}))\n                              (->> (p/binomial-dist 10 %)\n                                (into {}))))\n                         REtt (roundit RE)\n                         ptt (roundit % :places 2)]\n                     {:x % :y RE})\n                  (range 0.06 0.98 0.01))))\n\n;;; Use Ctrl-X J at right paren\n(def JSD it/jensen-shannon)\n;;; Use Ctrl-X Ctrl-C : execute on JVM bind to client `mixed-data`\n(def mixed-data\n  (clj (concat\n             (mapv #(let [RE (it/KLD (->> obsdist (into {}))\n                                     (->> (p/binomial-dist 10 %)\n                                          (into {})))]\n                      {:x % :y RE :RE \"KLD\"})\n                   (range 0.06 0.98 0.01))\n             (mapv #(let [RE (Math/sqrt (JSD (->> obsdist (into {}))\n                                             (->> (p/binomial-dist 10 %)\n                                               (into {}))))]\n                      {:x % :y RE :RE \"JSD\"})\n                   (range 0.06 0.98 0.01)))))\n\n\n;;; Interactive layer plot with both KLD and Sqrt(JSD)\n(hc/xform\n ht/layer-chart :FID :f15 :VID :v15\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"150px\"]\n         [p {:style {:width \"500px\" :font-size \"16px\"}}\n          \"\\\\(\\\\sqrt{JSD(P \\\\Vert Q)}\\\\) and \\\\(KLD(P \\\\Vert Q)\\\\). Zoom with mouse wheel. Pan with shift-left-mouse\"]]\n :TITLE \"Minimum entropy: True P to Binomial Q estimate\"\n :DATA mixed-data\n :LAYER [(hc/xform ht/line-chart\n                   :POINT true\n                   :TRANSFORM [{:filter {:field \"RE\" :equal \"KLD\"}}]\n                   :SELECTION ht/interval-scales :INAME \"grid1\"\n                   :COLOR {:field \"RE\" :type \"nominal\"\n                           :legend {:type \"symbol\" :offset 0 :title \"RE\"}}\n                   :XTITLE \"Binomial Distribution P paramter\"\n                   :YTITLE \"KLD(P||Q)\")\n         (hc/xform ht/line-chart\n                   :POINT true\n                   :TRANSFORM [{:filter {:field \"RE\" :equal \"JSD\"}}]\n                   :SELECTION ht/interval-scales :INAME \"grid2\"\n                   :COLOR {:field \"RE\" :type \"nominal\"\n                           :legend {:type \"symbol\" :offset 0 :title \"RE\"}}\n                   :XTITLE \"Binomial Distribution P paramter\"\n                   :YTITLE \"Sqrt(JSD(P||Q))\")]\n :RESOLVE {:scale {\"y\" \"independent\"}})\n\n\n\n\n;;; This last one is another Vega plot. But it is so large that it is not\n;;; paired with another in the same row....\n(hc/xform\n ht/tree-layout :MODE \"vega\" :FID :f99 :VID :v99\n :LEFT '[[p {:style {:width \"100px\":min-width \"100px\"}}]]\n :TOP '[[gap :size \"100px\"]\n         [md {:style {:font-size \"16px\"}}\n          \"Another Vega plot, this time showing tree layout\"]]\n :WIDTH 650, :HEIGHT 1600\n :UDATA\n \"https://raw.githubusercontent.com/vega/vega-datasets/master/data/flare.json\"\n :LINKSHAPE \"diagonal\" :LAYOUT \"tidy\" :FONTSIZE 11\n :CFIELD \"depth\")\n\n", :out-height "100px", :eid "ed-gallery", :height "700px"}}, :specs [{:usermeta {:frame {:pos :after, :at :end, :fid :f1, :left [[gap :size "100px"] [md {:style {:font-size "25px", :width 900}} "\n# A Gallery of various visualizations and MD / LaTex\n  Open the editor pane to see code and/or mess with it\n"]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}} {:usermeta {:frame {:pos :after, :at :end, :fid :f1b, :left [[gap :size "100px"] [md {:style {:font-size "25px", :width 900}} ""]]}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}} {:usermeta {:frame {:top [[gap :size "100px"] [md {:style {:font-size "16px"}} "Layers - scatter with opacity 0.3; smoothed trend lines"]], :pos :after, :at :end, :fid :f2, :left [[p {:style {:min-width "100px", :width "100px"}}]]}, :vid :v2, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}, :config {:bar {:discreteBandSize 5, :binSpacing 1, :continuousBandSize 5}}, :width 400, :background "floralwhite", :layer [{:encoding {:y {:field "Miles_per_Gallon", :type "quantitative"}, :color {:field "Origin", :type "nominal"}, :opacity {:value 0.3}, :x {:field "Horsepower", :type "quantitative"}, :tooltip [{:field "Horsepower", :type "quantitative"} {:field "Miles_per_Gallon", :type "quantitative"}]}, :usermeta {:frame {:pos :after, :at :end, :fid :f2}, :vid :v2, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}, :mark {:type "circle"}, :width 400, :background "floralwhite", :height 300} {:encoding {:y {:field "Miles_per_Gallon", :type "quantitative", :aggregate :mean}, :color {:field "Origin", :type "nominal"}, :x {:field "Horsepower", :type "quantitative", :bin true}}, :usermeta {:frame {:pos :after, :at :end}, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}, :mark {:type "line"}, :width 400, :background "floralwhite", :height 300}], :height 300, :data {:url "data/cars.json"}} {:encoding {:y {:field "Miles_per_Gallon", :type "quantitative", :aggregate :mean}, :color {:field "Origin", :type "nominal"}, :column {:field "Origin"}, :x {:field "Horsepower", :type "quantitative", :bin true}}, :usermeta {:frame {:top [[gap :size "100px"] [md {:style {:font-size "16px"}} "Smoothed faceted line plot"]], :pos :after, :at :end, :fid :f3, :left [[p {:style {:min-width "100px", :width "100px"}}]]}, :vid :v3, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}, :mark {:type "line"}, :width 250, :background "floralwhite", :height 200, :data {:url "data/cars.json"}} {:autosize "pad", :legends [{:fill "color", :type "gradient"}], :usermeta {:frame {:top [[gap :size "100px"] [md {:style {:font-size "16px"}} "Contour plot - notice: **mode** is Vega"]], :pos :after, :at :end, :fid :f4, :left [[p {:style {:min-width "100px", :width "100px"}}]]}, :vid :v4, :session-name "Exploring", :opts {:mode "vega", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :order :row}}}, :config {:range {:heatmap {:scheme "greenblue"}}}, :axes [{:scale "x", :grid true, :orient "bottom", :title "Engine Horsepower", :domain false} {:scale "y", :grid true, :orient "left", :title "Miles/Gallon", :domain false}], :width 400, :scales [{:zero false, :name "x", :type "linear", :round true, :nice true, :domain {:field "Horsepower", :data "source"}, :range "width"} {:zero false, :name "y", :type "linear", :round true, :nice true, :domain {:field "Miles_per_Gallon", :data "source"}, :range "height"} {:zero true, :name "color", :type "sequential", :domain {:field "value", :data "contours"}, :range "heatmap"}], :padding 5, :marks [{:transform [{:field "datum", :type "geopath"}], :type "path", :from {:data "contours"}, :encode {:enter {:stroke {:value "#888"}, :fill {:scale "color", :field "value"}, :fillOpacity {:value 0.35}, :strokeWidth {:value 1}}}} {:name "marks", :type "symbol", :from {:data "source"}, :encode {:update {:y {:scale "y", :field "Miles_per_Gallon"}, :fill [{:value "black", :test "points"} {:value "transparent"}], :size {:value 4}, :x {:scale "x", :field "Horsepower"}}}}], :$schema "https://vega.github.io/schema/vega/v4.json", :signals [{:name "count", :value 10, :bind {:options [1 5 10 20], :input "select"}} {:name "points", :value true, :bind {:input "checkbox"}}], :height 300, :data [{:transform [{:type "filter", :expr "datum['Horsepower'] != null && datum['Miles_per_Gallon'] !=null"}], :name "source", :url "data/cars.json"} {:transform [{:y {:expr "scale('y', datum.Miles_per_Gallon)"}, :type "contour", :size [{:signal "width"} {:signal "height"}], :count {:signal "count"}, :x {:expr "scale('x', datum.Horsepower)"}}], :name "contours", :source "source"}]} {:encoding {:y {:field "y", :type "quantitative"}, :x {:field "x", :type "quantitative"}}, :usermeta {:frame {:top [[gap :size "200px"] [p {:style {:font-size "16px"}} "Simple plot with LaTex: \\(f(x) = \\sqrt x\\)"]], :pos :after, :at :end, :fid :f5, :left [[p {:style {:min-width "100px", :width "100px"}}]]}, :vid :v5, :session-name "Exploring", :opts {:mode "vega-lite", :source false, :export {:png true, :svg true}, :renderer "canvas", :scaleFactor 1, :editor true}, :msgop :tabs, :tab {:label "Expl1", :id :expl1, :opts {:eltsper 2, :size "auto", :rgap "20px", :cgap "20px", :order :row}}}, :mark {:type "line"}, :width 400, :background "floralwhite", :height 300, :data {:values [{:y 0.0316, :x 0.001} {:y 0.3178, :x 0.101} {:y 0.4483, :x 0.201} {:y 0.5486, :x 0.301} {:y 0.6332, :x 0.401} {:y 0.7078, :x 0.501} {:y 0.7752, :x 0.601} {:y 0.8373, :x 0.701} {:y 0.895, :x 0.801} {:y 0.9492, :x 0.901} {:y 1.0005, :x 1.001} {:y 1.0493, :x 1.101} {:y 1.0959, :x 1.201} {:y 1.1406, :x 1.301} {:y 1.1836, :x 1.401} {:y 1.2252, :x 1.501} {:y 1.2653, :x 1.601} {:y 1.3042, :x 1.701} {:y 1.342, :x 1.801} {:y 1.3788, :x 1.901} {:y 1.4146, :x 2.001} {:y 1.4495, :x 2.101} {:y 1.4836, :x 2.201} {:y 1.5169, :x 2.301} {:y 1.5495, :x 2.401} {:y 1.5815, :x 2.501} {:y 1.6128, :x 2.601} {:y 1.6435, :x 2.701} {:y 1.6736, :x 2.801} {:y 1.7032, :x 2.901} {:y 1.7323, :x 3.001} {:y 1.761, :x 3.101} {:y 1.7891, :x 3.201} {:y 1.8169, :x 3.301} {:y 1.8442, :x 3.401} {:y 1.8711, :x 3.501} {:y 1.8976, :x 3.601} {:y 1.9238, :x 3.701} {:y 1.9496, :x 3.801} {:y 1.9751, :x 3.901} {:y 2.0002, :x 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