---
title: "Adapt this title to indicate what you did"
subtitle: "LCG BEII personal work -- 2024"
author: "Firstname LASTNAME"
date: "`r Sys.Date()`"
output:
  word_document: default
  pdf_document:
    fig_caption: yes
    highlight: zenburn
    toc: yes
    toc_depth: 3
  html_document:
    df_print: paged
    code_folding: hide
    self_contained: no
    fig_caption: yes
    highlight: zenburn
    theme: cerulean
    toc: yes
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---

## Instructions

- *The report can be written in English, Spannish or French*
- *This template is provided in Rmd and .docx formats.*
- *Whichever environment you use to generate the report (Rstudio, Word, LibreOffice), **your final report should be submitted in .docx format**. This enables me to comment it in the margin. *
- *Rename this file to indicate your LASTNAME and Firstname*
- *Adapt the title to your specific study*
- *Indicate your name and mail in the header above*
- *Update the date*
- *Before submitting the report, suppress all the instructions in italics below, including this whole section*


## Introduction

- *size: ~1/2 page*
- *context*
- *general motivation of the analysis*
- *particular questions/approaches addressed in this document*



## Methods


- ~ *1/2 page + all details in supplementary material*
- *indicate the main resources and tools used in your analysis, and what they were used to do *
- *explanation of the main methodological choices*


## Results and discussion

- *~ 2 pages, figures and tables non-included*

* * * * * * 

## Conclusions and perspectives

- *~ 1/2 page, with summary of the results, some consideration about their relevance, and a perspective (what coul be done next ?)*


* * * * * * 

## Supplementary material

*An essential issue of scientific activity is  tractability (how were the results produced?) and reroducibility (can someone else reproduce the experiment, and get the same results?): the supmat must contain the precise list of all the commands / parameters used to achieve the results. *


### Bioinformatics resources used for this work

*The Table below indicates the bioinformatics resources (tools, databases) used for this analysis.*

| Acronym | Description | URL | 
|---------|-------------|-----|
| RSAT | Regulatory Sequence Analysis Tools | <http://rsat.eu/> |
| ... | .... | ... Please complete the table ... |

### Data sources

*A complete list of the data sources: provide the original IDs of the datasets (e.g. ReMap URL of your Factor, name of the Factor, cell typoe, ID of your peaks, Jaspar ID, Hocomoco ID, ...).*

### Complete list of commands and parameters

*Please indicate here the complete list of tools, commands and parameters used to produce the results. In principle this should enable anyone to reproduce your analysis.*

* * * * * * *
