Package SAMtool version 1.9.1 Package built using 89303/R 4.6.0; x86_64-pc-linux-gnu; 2026-01-16 09:02:56 UTC; unix Checked with rchk version 35618ebbccf3cd0b45a3530e6303970a22a9056b LLVM version 14.0.6 More information at https://github.com/kalibera/cran-checks/blob/master/rchk/PROTECT.md For rchk in docker image see https://github.com/kalibera/rchk/blob/master/doc/DOCKER.md Function CppAD::AD > > RCM > > >(objective_function > > >*) [UP] calling allocating function tmbutils::array > > > tmbutils::asArray > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:15 [UP] calling allocating function tmbutils::array > > > tmbutils::asArray > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:26 [UP] calling allocating function tmbutils::array > > > tmbutils::asArray > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:29 [UP] calling allocating function tmbutils::array > > > tmbutils::asArray > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:32 [UP] calling allocating function tmbutils::array > > > tmbutils::asArray > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:35 [UP] calling allocating function tmbutils::array > > > tmbutils::asArray > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:38 [UP] calling allocating function tmbutils::matrix > > > asMatrix > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:104 [UP] calling allocating function tmbutils::matrix > > > asMatrix > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:105 [UP] calling allocating function tmbutils::matrix > > > asMatrix > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:107 [UP] calling allocating function tmbutils::matrix > > > asMatrix > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:115 [UP] calling allocating function tmbutils::matrix > > > asMatrix > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:116 Function CppAD::AD > > SCA > > >(objective_function > > >*) [UP] calling allocating function tmbutils::array > > > tmbutils::asArray > > >(SEXPREC*) with argument allocated using objective_function > > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/SCA.hpp:27 Function CppAD::AD > RCM > >(objective_function > >*) [UP] calling allocating function tmbutils::array > > tmbutils::asArray > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:15 [UP] calling allocating function tmbutils::array > > tmbutils::asArray > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:26 [UP] calling allocating function tmbutils::array > > tmbutils::asArray > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:29 [UP] calling allocating function tmbutils::array > > tmbutils::asArray > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:32 [UP] calling allocating function tmbutils::array > > tmbutils::asArray > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:35 [UP] calling allocating function tmbutils::array > > tmbutils::asArray > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:38 [UP] calling allocating function tmbutils::matrix > > asMatrix > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:104 [UP] calling allocating function tmbutils::matrix > > asMatrix > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:105 [UP] calling allocating function tmbutils::matrix > > asMatrix > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:107 [UP] calling allocating function tmbutils::matrix > > asMatrix > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:115 [UP] calling allocating function tmbutils::matrix > > asMatrix > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:116 Function CppAD::AD > SCA > >(objective_function > >*) [UP] calling allocating function tmbutils::array > > tmbutils::asArray > >(SEXPREC*) with argument allocated using objective_function > >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/SCA.hpp:27 Function CppAD::AD RCM >(objective_function >*) [UP] calling allocating function tmbutils::array > tmbutils::asArray >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:15 [UP] calling allocating function tmbutils::array > tmbutils::asArray >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:26 [UP] calling allocating function tmbutils::array > tmbutils::asArray >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:29 [UP] calling allocating function tmbutils::array > tmbutils::asArray >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:32 [UP] calling allocating function tmbutils::array > tmbutils::asArray >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:35 [UP] calling allocating function tmbutils::array > tmbutils::asArray >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:38 [UP] calling allocating function tmbutils::matrix > asMatrix >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:104 [UP] calling allocating function tmbutils::matrix > asMatrix >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:105 [UP] calling allocating fERROR: too many states (abstraction error?) in function double DD(objective_function*) unction tmbutils::matrix > asMatrix >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:107 [UP] calling allocating function tmbutils::matrix > asMatrix >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:115 [UP] calling allocating function tmbutils::matrix > asMatrix >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:116 Function CppAD::AD SCA >(objective_function >*) [UP] calling allocating function tmbutils::array > tmbutils::asArray >(SEXPREC*) with argument allocated using objective_function >::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/SCA.hpp:27 Function double RCM(objective_function*) [UP] calling allocating function tmbutils::array tmbutils::asArray(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:15 [UP] calling allocating function tmbutils::array tmbutils::asArray(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:26 [UP] calling allocating function tmbutils::array tmbutils::asArray(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:29 [UP] calling allocating function tmbutils::array tmbutils::asArrayERROR: too many states (abstraction error?) in function double SCA(objective_function*) (SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:32 [UP] calling allocating function tmbutils::array tmbutils::asArray(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:35 [UP] calling allocating function tmbutils::array tmbutils::asArray(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:38 [UP] calling allocating function tmbutils::matrix asMatrix(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:104 [UP] calling allocating function tmbutils::matrix asMatrix(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:105 [UP] calling allocating function tmbutils::matrix asMatrix(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:107 [UP] calling allocating function tmbutils::matrix asMatrix(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:115 [UP] calling allocating function tmbutils::matrix asMatrix(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/RCM.hpp:116 Function double SCA(objective_function*) [UP] calling allocating function tmbutils::array tmbutils::asArray(SEXPREC*) with argument allocated using objective_function::getShape(char const*, Rboolean (*)(SEXPREC*)) SAMtool/src/./../inst/include/SCA.hpp:27