model_dir:  '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/'
star_model_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/StarDist3D/'
unet_model_dir:  '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/Unet3D/'
roi_model_dir:  '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/MASKUNET/'
den_model_dir:  '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/CARE/'
cellpose3D_model_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/CellPose3D/'
cellpose2D_model_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/CellPose/'
cloud_nuclei_model_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/NucleiCloud/'
cloud_membrane_model_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/MembraneCloud/'
oneat_nuclei_model_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/Oneat/oneat_xenopus_densenet/'
track_model_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Models/TrackModels/'
track_model_training_data_dir: '/lustre/fsn1/projects/rech/jsy/uzj81mi/Mari_Data_Training/track_training_data/'
oneat_nuclei_model_name: 'oneat_xenopus_densenet'
unet_nuclei_model_name: 'unet_nuclei_xenopus_mari'
star_nuclei_model_name: 'nuclei_xenopus_mari'
unet_membrane_model_name: 'unet_membrane_xenopus_mari'
star_membrane_model_name: 'membrane_xenopus_mari'
roi_nuclei_model_name: 'unet_roi_nuclei_xenopus'
den_nuclei_model_name: 'denoising_nuclei_xenopus'
cloud_nuclei_model_name: 'xenopus_nuclei_autoencoder_filled.ckpt'
cloud_nuclei_model_json: 'xenopus_nuclei_autoencoder_filled.json'

cloud_membrane_model_name: 'xenopus_membrane_autoencoder_filled.ckpt'
cloud_membrane_model_json: 'xenopus_membrane_autoencoder_filled.json'

cellpose3D_model_name: 'xenopus_membrane_cellpose_3D_litest'
cellpose2D_model_name: 'mem_mneongreen'
cellpose2D_nuclei_model_name: 'nucleitorch_3'
cellpose_model_type: 'cyto3'
track_shape_model_name: 'xenopus_shape_track'
track_dynamic_model_name: 'xenopus_dynamic_track'
track_shape_dynamic_model_name: 'xenopus_shape_dynamic_track'
track_shape_model_no_latent_name: 'xenopus_shape_non_latent_track'
track_dynamic_model_no_latent_name: 'xenopus_dynamic_non_latent_track'
track_shape_dynamic_model_no_latent_name: 'xenopus_shape_dynamic_non_latent_track'


edge_enhancement_model_name: 'membrane_edge_enhancement'


nuclei_npz_filename: 'xenopus_nuclei'
membrane_npz_filename: 'xenopus_membrane'
roi_npz_filename: 'xenopus_roi'