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`RTCGA.mRNA` R packages. It contains the mRNA expression for 3 genes -
GATA3, PTEN and XBP1- from 3 different datasets: Breast invasive carcinoma
(BRCA), Ovarian serous cystadenocarcinoma (OV) and Lung squamous cell
carcinoma (LUSC)"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Gene Expression Data</h1>
<small class="dont-index">Source: <a href="https://github.com/kassambara/ggpubr/blob/HEAD/R/gene_expression.R" class="external-link"><code>R/gene_expression.R</code></a></small>
<div class="hidden name"><code>gene_expression.Rd</code></div>
</div>
<div class="ref-description">
<p>Gene expression data extracted from TCGA using the `RTCGA` and
`RTCGA.mRNA` R packages. It contains the mRNA expression for 3 genes -
GATA3, PTEN and XBP1- from 3 different datasets: Breast invasive carcinoma
(BRCA), Ovarian serous cystadenocarcinoma (OV) and Lung squamous cell
carcinoma (LUSC)</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="st">"gene_expression"</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="format">
<h2>Format</h2>
<p>A data frame with 1305 rows and 5 columns.</p><dl><dt><code>bcr_patient_barcode</code></dt>
<dd><p>sample ID</p></dd>
<dt><code>dataset</code></dt>
<dd><p>cance type</p></dd>
<dt><code>GATA3</code></dt>
<dd><p>GATA3 gene expression</p></dd>
<dt><code>PTEN</code></dt>
<dd><p>PTEN gene expression</p></dd>
<dt><code>XBP1</code></dt>
<dd><p>XBP1 gene expression.</p></dd>
</dl></div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">gene_expression</span><span class="op">)</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu"><a href="ggboxplot.html">ggboxplot</a></span><span class="op">(</span><span class="va">gene_expression</span>, x <span class="op">=</span> <span class="st">"dataset"</span>,</span></span>
<span class="r-in"><span>y <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"GATA3"</span>, <span class="st">"PTEN"</span>, <span class="st">"XBP1"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>combine <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
<span class="r-in"><span>ylab <span class="op">=</span> <span class="st">"Expression"</span>,</span></span>
<span class="r-in"><span>color <span class="op">=</span> <span class="st">"dataset"</span>, palette <span class="op">=</span> <span class="st">"jco"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="gene_expression-1.png" alt="" width="700" height="433"></span>
<span class="r-in"><span></span></span>
</code></pre></div>
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