{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Embedded Figure 1 from \"Deblur rapidly resolves single-nucleotide community sequence patterns\" showing merged _de novo_ OTU picking runs. "
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"import pandas as pd\n",
"import skbio\n",
"from emperor import Emperor, nbinstall\n",
"nbinstall()"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"collapsed": false
},
"outputs": [
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"execution_count": 2,
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],
"source": [
"md = pd.read_csv('embedded_figure_1_mapping_file.txt', sep='\\t', dtype=object).set_index('#SampleID')\n",
"pc = skbio.OrdinationResults.read('embedded_figure_1_ordination.txt')\n",
"Emperor(pc, md, remote=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": []
}
],
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