version: "0.2.5"
Organism:
  ensembl:
    vertebrates:
      release-110:
        url: https://ftp.ensembl.org/pub/release-110/species_EnsemblVertebrates.txt
        md5: f3faf95648d3a2b50fd3625456739706
      release-109:
        url: https://ftp.ensembl.org/pub/release-109/species_EnsemblVertebrates.txt
        md5: 7595bb989f5fec07eaca5e2138f67bd4
      release-108:
        url: https://ftp.ensembl.org/pub/release-108/species_EnsemblVertebrates.txt
        md5: d97c1ee302e4072f5f5c7850eff0b642
    bacteria:
      release-57:
        url: https://ftp.ensemblgenomes.ebi.ac.uk/pub/bacteria/release-57/species_EnsemblBacteria.txt
        md5: ee28510ed5586ea7ab4495717c96efc8
    fungi:
      release-57:
        url: http://ftp.ensemblgenomes.org/pub/fungi/release-57/species_EnsemblFungi.txt
        md5: dbcde58f4396ab8b2480f7fe9f83df8a
    metazoa:
      release-57:
        url: http://ftp.ensemblgenomes.org/pub/metazoa/release-57/species_EnsemblMetazoa.txt
        md5: 424636a574fec078a61cbdddb05f9132
    plants:
      release-57:
        url: https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-57/species_EnsemblPlants.txt
        md5: eadaa1f3e527e4c3940c90c7fa5c8bf4
    name: Ensembl
    website: https://www.ensembl.org
  ncbitaxon:
    all:
      2023-06-20:
        url: s3://bionty-assets/df_all__ncbitaxon__2023-06-20__Organism.parquet
        md5: 00d97ba65627f1cd65636d2df22ea76c
    name: NCBItaxon Ontology
    website: https://github.com/obophenotype/ncbitaxon
Gene:
  ensembl:
    human:
      release-110:
        url: s3://bionty-assets/df_human__ensembl__release-110__Gene.parquet
        md5: 832f3947e83664588d419608a469b528
      release-109:
        url: s3://bionty-assets/human_ensembl_release-109_Gene_lookup.parquet
        md5: 72da9968c74e96d136a489a6102a4546
    mouse:
      release-110:
        url: s3://bionty-assets/df_mouse__ensembl__release-110__Gene.parquet
        md5: fa4ce130f2929aefd7ac3bc8eaf0c4de
      release-109:
        url: s3://bionty-assets/mouse_ensembl_release-109_Gene_lookup.parquet
        md5: 08a1165061151b270b985317322bd2ed
    saccharomyces cerevisiae:
      release-110:
        url: s3://bionty-assets/df_saccharomyces cerevisiae__ensembl__release-110__Gene.parquet
        md5: 2e59495a3e87ea6575e408697dd73459
    name: Ensembl
    website: https://www.ensembl.org
Protein:
  uniprot:
    human:
      2023-03:
        url: s3://bionty-assets/df_human__uniprot__2023-03__Protein.parquet
        md5: 1c46e85c6faf5eff3de5b4e1e4edc4d3
      2023-02:
        url: s3://bionty-assets/human_uniprot_2023-02_Protein_lookup.parquet
        md5: 0cb7264eb43f91bd04dac792dd879241
    mouse:
      2023-03:
        url: s3://bionty-assets/df_mouse__uniprot__2023-03__Protein.parquet
        md5: 9d5e9a8225011d3218e10f9bbb96a46c
      2023-02:
        url: s3://bionty-assets/mouse_uniprot_2023-02_Protein_lookup.parquet
        md5: dcae4f62f5df145a5c15163fce7e9135
    name: Uniprot
    website: https://www.uniprot.org
CellMarker:
  cellmarker:
    human:
      2.0:
        url: s3://bionty-assets/human_cellmarker_2.0_CellMarker_lookup.parquet
        md5: d565d4a542a5c7e7a06255975358e4f4
    mouse:
      2.0:
        url: s3://bionty-assets/mouse_cellmarker_2.0_CellMarker_lookup.parquet
        md5: 189586732c63be949e40dfa6a3636105
    name: CellMarker
    website: http://bio-bigdata.hrbmu.edu.cn/CellMarker
CellLine:
  clo:
    all:
      2022-03-21:
        url: https://data.bioontology.org/ontologies/CLO/submissions/65/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
        md5: ea58a1010b7e745702a8397a526b3a33
    name: Cell Line Ontology
    website: https://bioportal.bioontology.org/ontologies/CLO
CellType:
  cl:
    all:
      2023-08-24:
        url: http://purl.obolibrary.org/obo/cl/releases/2023-08-24/cl.owl
        md5: 46e7dd89421f1255cf0191eca1548f73
      2023-04-20:
        url: http://purl.obolibrary.org/obo/cl/releases/2023-04-20/cl-base.owl
        md5: 58cdc1545f0d35e6fce76a65331b00fb
      2023-02-15:
        url: http://purl.obolibrary.org/obo/cl/releases/2023-02-15/cl-base.owl
        md5: 9331a6a029cb1863bd0584ab41508df7
      2022-08-16:
        url: http://purl.obolibrary.org/obo/cl/releases/2022-08-16/cl.owl
        md5: d0655766574e63f3fe5ed56d3c030880
    name: Cell Ontology
    website: https://obophenotype.github.io/cell-ontology
Tissue:
  uberon:
    all:
      2023-09-05:
        url: http://purl.obolibrary.org/obo/uberon/releases/2023-09-05/uberon.owl
        md5: abcee3ede566d1311d758b853ccdf5aa
      2023-04-19:
        url: http://purl.obolibrary.org/obo/uberon/releases/2023-04-19/uberon.owl
        md5: 5611dd1375d5a95ac7d7de8e25e6016f
      2023-02-14:
        url: http://purl.obolibrary.org/obo/uberon/releases/2023-02-14/uberon.owl
        md5: 3f94e22fae4cdde88a555c5cd59c47da
      2022-08-19:
        url: http://purl.obolibrary.org/obo/uberon/releases/2022-08-19/uberon.owl
        md5: c7c958a1ee48fdce146f2c1763eed27e
    name: Uberon multi-species anatomy ontology
    website: http://obophenotype.github.io/uberon
Disease:
  mondo:
    all:
      2023-08-02:
        url: http://purl.obolibrary.org/obo/mondo/releases/2023-08-02/mondo.owl
        md5: 7f33767422042eec29f08b501fc851db
      2023-04-04:
        url: http://purl.obolibrary.org/obo/mondo/releases/2023-04-04/mondo.owl
        md5: 700c43dd9ba51aecc7a8edfc3bc2dab1
      2023-02-06:
        url: http://purl.obolibrary.org/obo/mondo/releases/2023-02-06/mondo.owl
        md5: 2b7d479d4bd02a94eab47d1c9e64c5db
      2022-10-11:
        url: http://purl.obolibrary.org/obo/mondo/releases/2022-10-11/mondo.owl
        md5: 04b808d05c2c2e81430b20a0e87552bb
    name: Mondo Disease Ontology
    website: https://mondo.monarchinitiative.org
  doid:
    human:
      2023-03-31:
        url: http://purl.obolibrary.org/obo/doid/releases/2023-03-31/doid.obo
        md5: 64f083a1e47867c307c8eae308afc3bb
      2023-01-30:
        url: http://purl.obolibrary.org/obo/doid/releases/2023-01-30/doid.obo
        md5: 9f0c92ad2896dda82195e9226a06dc36
    name: Human Disease Ontology
    website: https://disease-ontology.org
ExperimentalFactor:
  efo:
    all:
      3.57.0:
        url: http://www.ebi.ac.uk/efo/releases/v3.57.0/efo.owl
        md5: 2ecafc69b3aba7bdb31ad99438505c05
      3.48.0:
        url: http://www.ebi.ac.uk/efo/releases/v3.48.0/efo.owl
        md5: 3367e9a9ae3dee9113024e5108c49091
    name: The Experimental Factor Ontology
    website: https://bioportal.bioontology.org/ontologies/EFO
Phenotype:
  hp:
    human:
      2023-06-17:
        url: https://github.com/obophenotype/human-phenotype-ontology/releases/download/v2023-06-17/hp.owl
        md5: 65e8d96bc81deb893163927063b10c06
      2023-04-05:
        url: https://github.com/obophenotype/human-phenotype-ontology/releases/download/v2023-04-05/hp.owl
        md5: bdf866e11d37cf6fd2aef25c325b2c8a
      2023-01-27:
        url: https://github.com/obophenotype/human-phenotype-ontology/releases/download/v2023-01-27/hp.owl
        md5: ceeb3ada771908deef620d74cd8e6b0f
    name: Human Phenotype Ontology
    website: https://hpo.jax.org
  mp:
    mammalian:
      2023-05-31:
        url: https://github.com/mgijax/mammalian-phenotype-ontology/releases/download/v2023-05-31/mp.owl
        md5: be89052cf6d9c0b6197038fe347ef293
    name: Mammalian Phenotype Ontology
    website: https://github.com/mgijax/mammalian-phenotype-ontology
  zp:
    zebrafish:
      2022-12-17:
        url: https://github.com/obophenotype/zebrafish-phenotype-ontology/releases/download/v2022-12-17/zp.owl
        md5: 03430b567bf153216c0fa4c3440b3b24
    name: Zebrafish Phenotype Ontology
    website: https://github.com/obophenotype/zebrafish-phenotype-ontology
  phe:
    human:
      1.2:
        url: s3://bionty-assets/df_human__phe__1.2__Phenotype.parquet
        md5: 741033ee1b13df7c41b4849e8bd02f13
    name: Phecodes ICD10 map
    website: https://phewascatalog.org/phecodes_icd10
  pato:
    all:
      2023-05-18:
        url: http://purl.obolibrary.org/obo/pato/releases/2023-05-18/pato.owl
        md5: bd472f4971492109493d4ad8a779a8dd
    name: Phenotype And Trait Ontology
    website: https://github.com/pato-ontology/pato
Pathway:
  go:
    all:
      2023-05-10:
        url: https://data.bioontology.org/ontologies/GO/submissions/1814/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
        md5: e9845499eadaef2418f464cd7e9ac92e
    name: Gene Ontology
    website: http://geneontology.org
  pw:
    all:
      7.79:
        url: https://data.bioontology.org/ontologies/PW/submissions/109/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
        md5: 02e2337bb1ab7cc4332ef6acc4cbdfa6
    name: Pathway Ontology
    website: https://www.ebi.ac.uk/ols/ontologies/pw
BFXPipeline:
  lamin:
    all:
      1.0.0:
        url: s3://bionty-assets/bfxpipelines.json
        md5: a7eff57a256994692fba46e0199ffc94
    name: Bioinformatics Pipeline
    website: https://lamin.ai
Drug:
  dron:
    all:
      2023-03-10:
        url: https://data.bioontology.org/ontologies/DRON/submissions/17/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
        md5: 75e86011158fae76bb46d96662a33ba3
    name: Drug Ontology
    website: https://bioportal.bioontology.org/ontologies/DRON
DevelopmentalStage:
  hsapdv:
    human:
      2020-03-10:
        url: http://aber-owl.net/media/ontologies/HSAPDV/11/hsapdv.owl
        md5: 52181d59df84578ed69214a5cb614036
    name: Human Developmental Stages
    website: https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv
  mmusdv:
    mouse:
      2020-03-10:
        url: http://aber-owl.net/media/ontologies/MMUSDV/9/mmusdv.owl
        md5: 5bef72395d853c7f65450e6c2a1fc653
    name: Mouse Developmental Stages
    website: https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv
Ethnicity:
  hancestro:
    human:
      3.0:
        url: https://github.com/EBISPOT/hancestro/raw/3.0/hancestro-base.owl
        md5: 76dd9efda9c2abd4bc32fc57c0b755dd
    name: Human Ancestry Ontology
    website: https://github.com/EBISPOT/hancestro
BioSample:
  ncbi:
    all:
      2023-09:
        url: s3://bionty-assets/df_all__ncbi__2023-09__BioSample.parquet
        md5: 918db9bd1734b97c596c67d9654a4126
    name: NCBI BioSample attributes
    website: https://www.ncbi.nlm.nih.gov/biosample/docs/attributes