#!/usr/local/bin/vmd # VMD script written by save_state $Revision: 1.47 $ # VMD version: 1.9.3 set viewplist {} set fixedlist {} proc vmdrestoremymaterials {} { set mlist { Opaque Transparent BrushedMetal Diffuse Ghost Glass1 Glass2 Glass3 Glossy HardPlastic MetallicPastel Steel Translucent Edgy EdgyShiny EdgyGlass Goodsell AOShiny AOChalky AOEdgy BlownGlass GlassBubble RTChrome } set mymlist [material list] foreach mat $mlist { if { [lsearch $mymlist $mat] == -1 } { material add $mat } } material change ambient Opaque 0.000000 material change diffuse Opaque 0.650000 material change specular Opaque 0.500000 material change shininess Opaque 0.534020 material change mirror Opaque 0.000000 material change opacity Opaque 1.000000 material change outline Opaque 0.000000 material change outlinewidth Opaque 0.000000 material change transmode Opaque 0.000000 material change ambient Transparent 0.000000 material change diffuse Transparent 0.650000 material change specular Transparent 0.500000 material change shininess Transparent 0.534020 material change mirror Transparent 0.000000 material change opacity Transparent 0.300000 material change outline Transparent 0.000000 material change outlinewidth Transparent 0.000000 material change transmode Transparent 0.000000 material change ambient BrushedMetal 0.080000 material change diffuse BrushedMetal 0.390000 material change specular BrushedMetal 0.340000 material change shininess BrushedMetal 0.150000 material change mirror BrushedMetal 0.000000 material change opacity BrushedMetal 1.000000 material change outline BrushedMetal 0.000000 material change outlinewidth BrushedMetal 0.000000 material change transmode BrushedMetal 0.000000 material change ambient Diffuse 0.000000 material change diffuse Diffuse 0.620000 material change specular Diffuse 0.000000 material change shininess Diffuse 0.530000 material change mirror Diffuse 0.000000 material change opacity Diffuse 1.000000 material change outline Diffuse 0.000000 material change outlinewidth Diffuse 0.000000 material change transmode Diffuse 0.000000 material change ambient Ghost 0.000000 material change diffuse Ghost 0.000000 material change specular Ghost 1.000000 material change shininess Ghost 0.230000 material change mirror Ghost 0.000000 material change opacity Ghost 0.100000 material change outline Ghost 0.000000 material change outlinewidth Ghost 0.000000 material change transmode Ghost 0.000000 material change ambient Glass1 0.000000 material change diffuse Glass1 0.500000 material change specular Glass1 0.650000 material change shininess Glass1 0.530000 material change mirror Glass1 0.000000 material change opacity Glass1 0.150000 material change outline Glass1 0.000000 material change outlinewidth Glass1 0.000000 material change transmode Glass1 0.000000 material change ambient Glass2 0.520000 material change diffuse Glass2 0.760000 material change specular Glass2 0.220000 material change shininess Glass2 0.590000 material change mirror Glass2 0.000000 material change opacity Glass2 0.680000 material change outline Glass2 0.000000 material change outlinewidth Glass2 0.000000 material change transmode Glass2 0.000000 material change ambient Glass3 0.150000 material change diffuse Glass3 0.250000 material change specular Glass3 0.750000 material change shininess Glass3 0.800000 material change mirror Glass3 0.000000 material change opacity Glass3 0.500000 material change outline Glass3 0.000000 material change outlinewidth Glass3 0.000000 material change transmode Glass3 0.000000 material change ambient Glossy 0.000000 material change diffuse Glossy 0.650000 material change specular Glossy 1.000000 material change shininess Glossy 0.880000 material change mirror Glossy 0.000000 material change opacity Glossy 1.000000 material change outline Glossy 0.000000 material change outlinewidth Glossy 0.000000 material change transmode Glossy 0.000000 material change ambient HardPlastic 0.000000 material change diffuse HardPlastic 0.560000 material change specular HardPlastic 0.280000 material change shininess HardPlastic 0.690000 material change mirror HardPlastic 0.000000 material change opacity HardPlastic 1.000000 material change outline HardPlastic 0.000000 material change outlinewidth HardPlastic 0.000000 material change transmode HardPlastic 0.000000 material change ambient MetallicPastel 0.000000 material change diffuse MetallicPastel 0.260000 material change specular MetallicPastel 0.550000 material change shininess MetallicPastel 0.190000 material change mirror MetallicPastel 0.000000 material change opacity MetallicPastel 1.000000 material change outline MetallicPastel 0.000000 material change outlinewidth MetallicPastel 0.000000 material change transmode MetallicPastel 0.000000 material change ambient Steel 0.250000 material change diffuse Steel 0.000000 material change specular Steel 0.380000 material change shininess Steel 0.320000 material change mirror Steel 0.000000 material change opacity Steel 1.000000 material change outline Steel 0.000000 material change outlinewidth Steel 0.000000 material change transmode Steel 0.000000 material change ambient Translucent 0.000000 material change diffuse Translucent 0.700000 material change specular Translucent 0.600000 material change shininess Translucent 0.300000 material change mirror Translucent 0.000000 material change opacity Translucent 0.800000 material change outline Translucent 0.000000 material change outlinewidth Translucent 0.000000 material change transmode Translucent 0.000000 material change ambient Edgy 0.000000 material change diffuse Edgy 0.660000 material change specular Edgy 0.000000 material change shininess Edgy 0.750000 material change mirror Edgy 0.000000 material change opacity Edgy 1.000000 material change outline Edgy 0.620000 material change outlinewidth Edgy 0.940000 material change transmode Edgy 0.000000 material change ambient EdgyShiny 0.000000 material change diffuse EdgyShiny 0.660000 material change specular EdgyShiny 0.960000 material change shininess EdgyShiny 0.750000 material change mirror EdgyShiny 0.000000 material change opacity EdgyShiny 1.000000 material change outline EdgyShiny 0.760000 material change outlinewidth EdgyShiny 0.940000 material change transmode EdgyShiny 0.000000 material change ambient EdgyGlass 0.000000 material change diffuse EdgyGlass 0.660000 material change specular EdgyGlass 0.500000 material change shininess EdgyGlass 0.750000 material change mirror EdgyGlass 0.000000 material change opacity EdgyGlass 0.620000 material change outline EdgyGlass 0.620000 material change outlinewidth EdgyGlass 0.940000 material change transmode EdgyGlass 0.000000 material change ambient Goodsell 0.520000 material change diffuse Goodsell 1.000000 material change specular Goodsell 0.000000 material change shininess Goodsell 0.000000 material change mirror Goodsell 0.000000 material change opacity Goodsell 1.000000 material change outline Goodsell 4.000000 material change outlinewidth Goodsell 0.900000 material change transmode Goodsell 0.000000 material change ambient AOShiny 0.000000 material change diffuse AOShiny 0.850000 material change specular AOShiny 0.200000 material change shininess AOShiny 0.530000 material change mirror AOShiny 0.000000 material change opacity AOShiny 1.000000 material change outline AOShiny 0.000000 material change outlinewidth AOShiny 0.000000 material change transmode AOShiny 0.000000 material change ambient AOChalky 0.000000 material change diffuse AOChalky 0.850000 material change specular AOChalky 0.000000 material change shininess AOChalky 0.530000 material change mirror AOChalky 0.000000 material change opacity AOChalky 1.000000 material change outline AOChalky 0.000000 material change outlinewidth AOChalky 0.000000 material change transmode AOChalky 0.000000 material change ambient AOEdgy 0.000000 material change diffuse AOEdgy 0.900000 material change specular AOEdgy 0.200000 material change shininess AOEdgy 0.530000 material change mirror AOEdgy 0.000000 material change opacity AOEdgy 1.000000 material change outline AOEdgy 0.620000 material change outlinewidth AOEdgy 0.930000 material change transmode AOEdgy 0.000000 material change ambient BlownGlass 0.040000 material change diffuse BlownGlass 0.340000 material change specular BlownGlass 1.000000 material change shininess BlownGlass 1.000000 material change mirror BlownGlass 0.000000 material change opacity BlownGlass 0.100000 material change outline BlownGlass 0.000000 material change outlinewidth BlownGlass 0.000000 material change transmode BlownGlass 1.000000 material change ambient GlassBubble 0.250000 material change diffuse GlassBubble 0.340000 material change specular GlassBubble 1.000000 material change shininess GlassBubble 1.000000 material change mirror GlassBubble 0.000000 material change opacity GlassBubble 0.040000 material change outline GlassBubble 0.000000 material change outlinewidth GlassBubble 0.000000 material change transmode GlassBubble 1.000000 material change ambient RTChrome 0.000000 material change diffuse RTChrome 0.650000 material change specular RTChrome 0.500000 material change shininess RTChrome 0.530000 material change mirror RTChrome 0.700000 material change opacity RTChrome 1.000000 material change outline RTChrome 0.000000 material change outlinewidth RTChrome 0.000000 material change transmode RTChrome 0.000000 } vmdrestoremymaterials # Atom selection macros atomselect macro at {resname ADE A THY T } atomselect macro acidic {resname ASP GLU } atomselect macro cyclic {resname HIS PHE PRO TRP TYR } atomselect macro acyclic {protein and not cyclic } atomselect macro aliphatic {resname ALA GLY ILE LEU VAL } atomselect macro alpha {protein and name CA } atomselect macro amino {protein } atomselect macro aromatic {resname HIS PHE TRP TYR } atomselect macro basic {resname ARG HIS LYS HSP } atomselect macro bonded {numbonds > 0 } atomselect macro buried {resname ALA LEU VAL ILE PHE CYS MET TRP } atomselect macro cg {resname CYT C GUA G } atomselect macro charged {basic or acidic } atomselect macro hetero {not (protein or nucleic) } atomselect macro hydrophobic {resname ALA LEU VAL ILE PRO PHE MET TRP } atomselect macro small {resname ALA GLY SER } atomselect macro medium {resname VAL THR ASP ASN PRO CYS ASX PCA HYP } atomselect macro large {protein and not (small or medium) } atomselect macro neutral {resname VAL PHE GLN TYR HIS CYS MET TRP ASX GLX PCA HYP } atomselect macro polar {protein and not hydrophobic } atomselect macro purine {resname ADE A GUA G } atomselect macro pyrimidine {resname CYT C THY T URA U } atomselect macro surface {protein and not buried } atomselect macro lipid {resname DLPE DMPC DPPC GPC LPPC PALM PC PGCL POPC POPE } atomselect macro lipids {lipid } atomselect macro ion {resname AL BA CA CAL CD CES CLA CL CO CS CU CU1 CUA HG IN IOD K LIT MG MN3 MO3 MO4 MO5 MO6 NA NAW OC7 PB POT PT RB SOD TB TL WO4 YB ZN ZN1 ZN2 } atomselect macro ions {ion } atomselect macro sugar {resname AGLC } atomselect macro solvent {not (protein or sugar or nucleic or lipid) } atomselect macro glycan {resname NAG BGLN FUC AFUC MAN AMAN BMA BMAN } atomselect macro carbon {name "C.*" and not ion } atomselect macro hydrogen {name "[0-9]?H.*" } atomselect macro nitrogen {name "N.*" } atomselect macro oxygen {name "O.*" } atomselect macro sulfur {name "S.*" and not ion } atomselect macro noh {not hydrogen } atomselect macro heme {resname HEM HEME } atomselect macro conformationall {altloc "" } atomselect macro conformationA {altloc "" or altloc "A" } atomselect macro conformationB {altloc "" or altloc "B" } atomselect macro conformationC {altloc "" or altloc "C" } atomselect macro conformationD {altloc "" or altloc "D" } atomselect macro conformationE {altloc "" or altloc "E" } atomselect macro conformationF {altloc "" or altloc "F" } atomselect macro drude {type DRUD or type LP } atomselect macro unparametrized beta<1 atomselect macro addedmolefacture {occupancy 0.8} atomselect macro qwikmd_protein {(not name QWIKMDDELETE and protein)} atomselect macro qwikmd_nucleic {(not name QWIKMDDELETE and nucleic)} atomselect macro qwikmd_glycan {(not name QWIKMDDELETE and glycan)} atomselect macro qwikmd_lipid {(not name QWIKMDDELETE and lipid)} atomselect macro qwikmd_hetero {(not name QWIKMDDELETE and hetero and not qwikmd_protein and not qwikmd_lipid and not qwikmd_nucleic and not qwikmd_glycan and not water)} # Display settings display eyesep 0.065000 display focallength 2.000000 display height 6.000000 display distance -2.000000 display projection Orthographic display nearclip set 0.500000 display farclip set 10.000000 display depthcue on display cuestart 0.500000 display cueend 10.000000 display cuestart 0.500000 display cueend 10.000000 display cuedensity 0.320000 display cuemode Exp2 display shadows off display ambientocclusion off display aoambient 0.800000 display aodirect 0.300000 display dof off display dof_fnumber 64.000000 display dof_focaldist 0.700000 mol new grid.pdb type pdb first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all mol delrep 0 top mol representation QuickSurf 1.000000 0.500000 1.000000 1.000000 mol color Beta mol selection {occupancy < 2.0 and beta > 0.2} mol material Transparent mol addrep top mol selupdate 0 top 0 mol colupdate 0 top 0 mol scaleminmax top 0 0.000000 1.000000 mol smoothrep top 0 0 mol drawframes top 0 {now} mol clipplane center 0 0 top {0.0 0.0 0.0} mol clipplane color 0 0 top {0.5 0.5 0.5 } mol clipplane normal 0 0 top {0.0 0.0 1.0} mol clipplane status 0 0 top {0} mol clipplane center 1 0 top {0.0 0.0 0.0} mol clipplane color 1 0 top {0.5 0.5 0.5 } mol clipplane normal 1 0 top {0.0 0.0 1.0} mol clipplane status 1 0 top {0} mol clipplane center 2 0 top {0.0 0.0 0.0} mol clipplane color 2 0 top {0.5 0.5 0.5 } mol clipplane normal 2 0 top {0.0 0.0 1.0} mol clipplane status 2 0 top {0} mol clipplane center 3 0 top {0.0 0.0 0.0} mol clipplane color 3 0 top {0.5 0.5 0.5 } mol clipplane normal 3 0 top {0.0 0.0 1.0} mol clipplane status 3 0 top {0} mol clipplane center 4 0 top {0.0 0.0 0.0} mol clipplane color 4 0 top {0.5 0.5 0.5 } mol clipplane normal 4 0 top {0.0 0.0 1.0} mol clipplane status 4 0 top {0} mol clipplane center 5 0 top {0.0 0.0 0.0} mol clipplane color 5 0 top {0.5 0.5 0.5 } mol clipplane normal 5 0 top {0.0 0.0 1.0} mol clipplane status 5 0 top {0} mol representation VDW 0.500000 14.000000 mol color ResType mol selection {occupancy > 2.0 and beta > 0.1} mol material Diffuse mol addrep top mol selupdate 1 top 0 mol colupdate 1 top 0 mol scaleminmax top 1 0.000000 0.000000 mol smoothrep top 1 0 mol drawframes top 1 {now} mol clipplane center 0 1 top {0.0 0.0 0.0} mol clipplane color 0 1 top {0.5 0.5 0.5 } mol clipplane normal 0 1 top {0.0 0.0 1.0} mol clipplane status 0 1 top {0} mol clipplane center 1 1 top {0.0 0.0 0.0} mol clipplane color 1 1 top {0.5 0.5 0.5 } mol clipplane normal 1 1 top {0.0 0.0 1.0} mol clipplane status 1 1 top {0} mol clipplane center 2 1 top {0.0 0.0 0.0} mol clipplane color 2 1 top {0.5 0.5 0.5 } mol clipplane normal 2 1 top {0.0 0.0 1.0} mol clipplane status 2 1 top {0} mol clipplane center 3 1 top {0.0 0.0 0.0} mol clipplane color 3 1 top {0.5 0.5 0.5 } mol clipplane normal 3 1 top {0.0 0.0 1.0} mol clipplane status 3 1 top {0} mol clipplane center 4 1 top {0.0 0.0 0.0} mol clipplane color 4 1 top {0.5 0.5 0.5 } mol clipplane normal 4 1 top {0.0 0.0 1.0} mol clipplane status 4 1 top {0} mol clipplane center 5 1 top {0.0 0.0 0.0} mol clipplane color 5 1 top {0.5 0.5 0.5 } mol clipplane normal 5 1 top {0.0 0.0 1.0} mol clipplane status 5 1 top {0} mol rename top grid.pdb set viewpoints([molinfo top]) {{{1 0 0 0.0556225} {0 1 0 -0.216755} {0 0 1 -0.0159188} {0 0 0 1}} {{0.624598 -0.625817 0.467104 0} {-0.616869 -0.762166 -0.196286 0} {0.478861 -0.165546 -0.862107 0} {0 0 0 1}} {{0.0408026 0 0 0} {0 0.0408026 0 0} {0 0 0.0408026 0} {0 0 0 1}} {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}} lappend viewplist [molinfo top] # done with molecule 0 mol new ../Data/system.pdb type pdb first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all mol delrep 0 top mol representation VDW 0.900000 14.000000 mol color Name mol selection {protein and resid 14 181 271 275 186} mol material Opaque mol addrep top mol selupdate 0 top 0 mol colupdate 0 top 0 mol scaleminmax top 0 0.000000 0.000000 mol smoothrep top 0 0 mol drawframes top 0 {now} mol clipplane center 0 0 top {0.0 0.0 0.0} mol clipplane color 0 0 top {0.5 0.5 0.5 } mol clipplane normal 0 0 top {0.0 0.0 1.0} mol clipplane status 0 0 top {0} mol clipplane center 1 0 top {0.0 0.0 0.0} mol clipplane color 1 0 top {0.5 0.5 0.5 } mol clipplane normal 1 0 top {0.0 0.0 1.0} mol clipplane status 1 0 top {0} mol clipplane center 2 0 top {0.0 0.0 0.0} mol clipplane color 2 0 top {0.5 0.5 0.5 } mol clipplane normal 2 0 top {0.0 0.0 1.0} mol clipplane status 2 0 top {0} mol clipplane center 3 0 top {0.0 0.0 0.0} mol clipplane color 3 0 top {0.5 0.5 0.5 } mol clipplane normal 3 0 top {0.0 0.0 1.0} mol clipplane status 3 0 top {0} mol clipplane center 4 0 top {0.0 0.0 0.0} mol clipplane color 4 0 top {0.5 0.5 0.5 } mol clipplane normal 4 0 top {0.0 0.0 1.0} mol clipplane status 4 0 top {0} mol clipplane center 5 0 top {0.0 0.0 0.0} mol clipplane color 5 0 top {0.5 0.5 0.5 } mol clipplane normal 5 0 top {0.0 0.0 1.0} mol clipplane status 5 0 top {0} mol representation Cartoon 2.100000 24.000000 5.000000 mol color Name mol selection {protein} mol material Opaque mol addrep top mol selupdate 1 top 0 mol colupdate 1 top 0 mol scaleminmax top 1 0.000000 0.000000 mol smoothrep top 1 0 mol drawframes top 1 {now} mol clipplane center 0 1 top {0.0 0.0 0.0} mol clipplane color 0 1 top {0.5 0.5 0.5 } mol clipplane normal 0 1 top {0.0 0.0 1.0} mol clipplane status 0 1 top {0} mol clipplane center 1 1 top {0.0 0.0 0.0} mol clipplane color 1 1 top {0.5 0.5 0.5 } mol clipplane normal 1 1 top {0.0 0.0 1.0} mol clipplane status 1 1 top {0} mol clipplane center 2 1 top {0.0 0.0 0.0} mol clipplane color 2 1 top {0.5 0.5 0.5 } mol clipplane normal 2 1 top {0.0 0.0 1.0} mol clipplane status 2 1 top {0} mol clipplane center 3 1 top {0.0 0.0 0.0} mol clipplane color 3 1 top {0.5 0.5 0.5 } mol clipplane normal 3 1 top {0.0 0.0 1.0} mol clipplane status 3 1 top {0} mol clipplane center 4 1 top {0.0 0.0 0.0} mol clipplane color 4 1 top {0.5 0.5 0.5 } mol clipplane normal 4 1 top {0.0 0.0 1.0} mol clipplane status 4 1 top {0} mol clipplane center 5 1 top {0.0 0.0 0.0} mol clipplane color 5 1 top {0.5 0.5 0.5 } mol clipplane normal 5 1 top {0.0 0.0 1.0} mol clipplane status 5 1 top {0} mol rename top system.pdb set viewpoints([molinfo top]) {{{1 0 0 0.0556225} {0 1 0 -0.216755} {0 0 1 -0.0159188} {0 0 0 1}} {{0.624598 -0.625817 0.467104 0} {-0.616869 -0.762166 -0.196286 0} {0.478861 -0.165546 -0.862107 0} {0 0 0 1}} {{0.0408026 0 0 0} {0 0.0408026 0 0} {0 0 0.0408026 0} {0 0 0 1}} {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}} lappend viewplist [molinfo top] set topmol [molinfo top] # done with molecule 1 foreach v $viewplist { molinfo $v set {center_matrix rotate_matrix scale_matrix global_matrix} $viewpoints($v) } foreach v $fixedlist { molinfo $v set fixed 1 } unset viewplist unset fixedlist mol top $topmol unset topmol proc vmdrestoremycolors {} { color scale colors RWB {1.0 0.0 0.0} {1.0 1.0 1.0} {0.0 0.0 1.0} color scale colors BWR {0.0 0.0 1.0} {1.0 1.0 1.0} {1.0 0.0 0.0} color scale colors RGryB {1.0 0.0 0.0} {0.5 0.5 0.5} {0.0 0.0 1.0} color scale colors BGryR {0.0 0.0 1.0} {0.5 0.5 0.5} {1.0 0.0 0.0} color scale colors RGB {1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0} color scale colors BGR {0.0 0.0 1.0} {0.0 1.0 0.0} {1.0 0.0 0.0} color scale colors RWG {1.0 0.0 0.0} {1.0 1.0 1.0} {0.0 1.0 0.0} color scale colors GWR {0.0 1.0 0.0} {1.0 1.0 1.0} {1.0 0.0 0.0} color scale colors GWB {0.0 1.0 0.0} {1.0 1.0 1.0} {0.0 0.0 1.0} color scale colors BWG {0.0 0.0 1.0} {1.0 1.0 1.0} {0.0 1.0 0.0} color scale colors BlkW {0.0 0.0 0.0} {0.5 0.5 0.5} {1.0 1.0 1.0} color scale colors WBlk {1.0 1.0 1.0} {0.5 0.5 0.5} {0.0 0.0 0.0} color scale method BWR set colorcmds { {color Display {Background} white} {color Display {BackgroundTop} black} {color Display {BackgroundBot} blue2} {color Display {FPS} white} {color Name {LPA} green} {color Name {LPB} green} {color Type {LP} green} {color Type {DRUD} pink} {color Element {X} cyan} {color Element {Ac} ochre} {color Element {Ag} ochre} {color Element {Al} ochre} {color Element {Am} ochre} {color Element {Ar} ochre} {color Element {As} ochre} {color Element {At} ochre} {color Element {Au} ochre} {color Element {B} ochre} {color Element {Ba} ochre} {color Element {Be} ochre} {color Element {Bh} ochre} {color Element {Bi} ochre} {color Element {Bk} ochre} {color Element {Br} ochre} {color Element {Ca} ochre} {color Element {Cd} ochre} {color Element {Ce} ochre} {color Element {Cf} ochre} {color Element {Cl} ochre} {color Element {Cm} ochre} {color Element {Co} ochre} {color Element {Cr} ochre} {color Element {Cs} ochre} {color Element {Cu} ochre} {color Element {Db} ochre} {color Element {Ds} ochre} {color Element {Dy} ochre} {color Element {Er} ochre} {color Element {Es} ochre} {color Element {Eu} ochre} {color Element {F} ochre} {color Element {Fe} ochre} {color Element {Fm} ochre} {color Element {Fr} ochre} {color Element {Ga} ochre} {color Element {Gd} ochre} {color Element {Ge} ochre} {color Element {He} ochre} {color Element {Hf} ochre} {color Element {Hg} ochre} {color Element {Ho} ochre} {color Element {Hs} ochre} {color Element {I} ochre} {color Element {In} ochre} {color Element {Ir} ochre} {color Element {K} ochre} {color Element {Kr} ochre} {color Element {La} ochre} {color Element {Li} ochre} {color Element {Lr} ochre} {color Element {Lu} ochre} {color Element {Md} ochre} {color Element {Mg} ochre} {color Element {Mn} ochre} {color Element {Mo} ochre} {color Element {Mt} ochre} {color Element {Na} ochre} {color Element {Nb} ochre} {color Element {Nd} ochre} {color Element {Ne} ochre} {color Element {Ni} ochre} {color Element {No} ochre} {color Element {Np} ochre} {color Element {Os} ochre} {color Element {Pa} ochre} {color Element {Pb} ochre} {color Element {Pd} ochre} {color Element {Pm} ochre} {color Element {Po} ochre} {color Element {Pr} ochre} {color Element {Pt} ochre} {color Element {Pu} ochre} {color Element {Ra} ochre} {color Element {Rb} ochre} {color Element {Re} ochre} {color Element {Rf} ochre} {color Element {Rg} ochre} {color Element {Rh} ochre} {color Element {Rn} ochre} {color Element {Ru} ochre} {color Element {Sb} ochre} {color Element {Sc} ochre} {color Element {Se} ochre} {color Element {Sg} ochre} {color Element {Si} ochre} {color Element {Sm} ochre} {color Element {Sn} ochre} {color Element {Sr} ochre} {color Element {Ta} ochre} {color Element {Tb} ochre} {color Element {Tc} ochre} {color Element {Te} ochre} {color Element {Th} ochre} {color Element {Ti} ochre} {color Element {Tl} ochre} {color Element {Tm} ochre} {color Element {U} ochre} {color Element {V} ochre} {color Element {W} ochre} {color Element {Xe} ochre} {color Element {Y} ochre} {color Element {Yb} ochre} {color Element {Zr} ochre} {color Resname {CAL} silver} {color Resname {SOD} green} {color Resname {CLA} white} {color Resname {GLYC} pink} {color Chain {P} blue} {color Chain {A} red} {color Chain {B} gray} {color Chain {C} orange} {color Chain {F} yellow} {color Chain {E} tan} {color Chain {D} silver} {color Segname {} blue} {color Segname {PROT} red} {color Segname {WATA} gray} {color Segname {WATB} orange} {color Segname {WATC} yellow} {color Segname {CALC} tan} {color Segname {SODI} silver} {color Segname {CLOR} green} {color Segname {GLYD} white} {color Conformation {all} blue} {color Molecule {0} blue} {color Molecule {grid.pdb} blue} {color Molecule {1} red} {color Molecule {system.pdb} red} {color Structure {3_10_Helix} blue} {color Surface {Grasp} gray} {color Labels {Springs} orange} {color Stage {Even} gray} {color Stage {Odd} silver} } foreach colcmd $colorcmds { set val [catch {eval $colcmd}] } color change rgb 0 0.0 0.0 1.0 color change rgb 2 0.3499999940395355 0.3499999940395355 0.3499999940395355 color change rgb 3 1.0 0.5 0.0 color change rgb 4 1.0 1.0 0.0 color change rgb 5 0.5 0.5 0.20000000298023224 color change rgb 6 0.6000000238418579 0.6000000238418579 0.6000000238418579 color change rgb 7 0.0 1.0 0.0 color change rgb 9 1.0 0.6000000238418579 0.6000000238418579 color change rgb 11 0.6499999761581421 0.0 0.6499999761581421 color change rgb 12 0.5 0.8999999761581421 0.4000000059604645 color change rgb 13 0.8999999761581421 0.4000000059604645 0.699999988079071 color change rgb 14 0.5 0.30000001192092896 0.0 color change rgb 15 0.5 0.5 0.75 color change rgb 17 0.8799999952316284 0.9700000286102295 0.019999999552965164 color change rgb 18 0.550000011920929 0.8999999761581421 0.019999999552965164 color change rgb 19 0.0 0.8999999761581421 0.03999999910593033 color change rgb 20 0.0 0.8999999761581421 0.5 color change rgb 21 0.0 0.8799999952316284 1.0 color change rgb 22 0.0 0.7599999904632568 1.0 color change rgb 23 0.019999999552965164 0.3799999952316284 0.6700000166893005 color change rgb 24 0.009999999776482582 0.03999999910593033 0.9300000071525574 color change rgb 25 0.27000001072883606 0.0 0.9800000190734863 color change rgb 26 0.44999998807907104 0.0 0.8999999761581421 color change rgb 27 0.8999999761581421 0.0 0.8999999761581421 color change rgb 28 1.0 0.0 0.6600000262260437 color change rgb 29 0.9800000190734863 0.0 0.23000000417232513 color change rgb 30 0.8100000023841858 0.0 0.0 color change rgb 31 0.8899999856948853 0.3499999940395355 0.0 color change rgb 32 0.9599999785423279 0.7200000286102295 0.0 } vmdrestoremycolors label textsize 1.0