##################
##R requirements##
##################
> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.7 LTS

Matrix products: default
BLAS:   /home/mibrahim/software/R-3.6.1/lib/R/lib/libRblas.so
LAPACK: /home/mibrahim/software/R-3.6.1/lib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] tibble_2.1.3                msigdbr_7.0.1              
 [3] clusterProfiler_3.12.0      gplots_3.0.1.2             
 [5] vegan_2.5-6                 lattice_0.20-38            
 [7] permute_0.9-5               ggraph_2.0.0               
 [9] mclust_5.4.5                genesorteR_0.4.1           
[11] RANN_2.6.1                  igraph_1.2.4.2             
[13] irlba_2.3.3                 Matrix_1.2-17              
[15] scran_1.12.1                scater_1.12.2              
[17] ggplot2_3.2.1               SingleCellExperiment_1.6.0 
[19] SummarizedExperiment_1.14.1 DelayedArray_0.10.0        
[21] BiocParallel_1.18.1         matrixStats_0.55.0         
[23] Biobase_2.44.0              GenomicRanges_1.36.1       
[25] GenomeInfoDb_1.20.0         IRanges_2.18.3             
[27] S4Vectors_0.22.1            BiocGenerics_0.30.0        
[29] vioplot_0.3.4               zoo_1.8-7                  
[31] sm_2.2-5.6                  pheatmap_1.0.12            

loaded via a namespace (and not attached):
  [1] fastmatch_1.1-0          plyr_1.8.5               lazyeval_0.2.2          
  [4] splines_3.6.1            urltools_1.7.3           digest_0.6.23           
  [7] GOSemSim_2.10.0          viridis_0.5.1            GO.db_3.8.2             
 [10] gdata_2.18.0             magrittr_1.5             memoise_1.1.0           
 [13] cluster_2.1.0            limma_3.40.6             graphlayouts_0.5.0      
 [16] enrichplot_1.4.0         prettyunits_1.1.1        colorspace_1.4-1        
 [19] blob_1.2.1               ggrepel_0.8.1            dplyr_0.8.3             
 [22] tcltk_3.6.1              crayon_1.3.4             RCurl_1.98-1.1          
 [25] jsonlite_1.6             glue_1.3.1               polyclip_1.10-0         
 [28] gtable_0.3.0             zlibbioc_1.30.0          XVector_0.24.0          
 [31] UpSetR_1.4.0             BiocSingular_1.0.0       scales_1.1.0            
 [34] DOSE_3.10.2              DBI_1.1.0                edgeR_3.26.8            
 [37] Rcpp_1.0.3               viridisLite_0.3.0        progress_1.2.2          
 [40] gridGraphics_0.4-1       dqrng_0.2.1              bit_1.1-15.1            
 [43] europepmc_0.3            rsvd_1.0.2               httr_1.4.1              
 [46] fgsea_1.10.1             RColorBrewer_1.1-2       pkgconfig_2.0.3         
 [49] farver_2.0.3             locfit_1.5-9.1           dynamicTreeCut_1.63-1   
 [52] ggplotify_0.0.4          tidyselect_1.0.0         labeling_0.3            
 [55] rlang_0.4.4              reshape2_1.4.3           AnnotationDbi_1.46.1    
 [58] munsell_0.5.0            tools_3.6.1              RSQLite_2.2.0           
 [61] ggridges_0.5.2           stringr_1.4.0            bit64_0.9-7             
 [64] tidygraph_1.1.2          caTools_1.18.0           purrr_0.3.3             
 [67] nlme_3.1-140             DO.db_2.9                xml2_1.2.2              
 [70] compiler_3.6.1           beeswarm_0.2.3           statmod_1.4.33          
 [73] tweenr_1.0.1             stringi_1.4.5            vctrs_0.2.2             
 [76] pillar_1.4.3             lifecycle_0.1.0          BiocManager_1.30.10     
 [79] triebeard_0.3.0          BiocNeighbors_1.2.0      data.table_1.12.8       
 [82] cowplot_1.0.0            bitops_1.0-6             qvalue_2.16.0           
 [85] R6_2.4.1                 KernSmooth_2.23-15       gridExtra_2.3           
 [88] vipor_0.4.5              MASS_7.3-51.4            gtools_3.8.1            
 [91] assertthat_0.2.1         withr_2.1.2              GenomeInfoDbData_1.2.1  
 [94] mgcv_1.8-28              hms_0.5.3                grid_3.6.1              
 [97] tidyr_1.0.2              DelayedMatrixStats_1.6.1 rvcheck_0.1.7           
[100] ggforce_0.3.1            ggbeeswarm_0.6.0        
> 








#######################
##Python requirements##
#######################
Python 3.7.3 | packaged by conda-forge | (default, Jul  1 2019, 21:52:21) 
numpy: 1.17.0
umap: 0.3.9