Uberstrain ID Clusters Host No. Barcode Source Niche Source Type Source Details Collection Year Collection Month Collection Day Collection Time Continent Country Region District City Post Code Latitude Longitude Serovar Subspecies Disease Antigenic Formulas Lab Contact Phage Type Antibiotic Resistance Comment Bio Project ID Project ID Sample ID Secondary Sample ID Date Entered Release Date Differences ST SAL_CA0836AA 1 2005 Ireland Outbreak 5 SAL_CA0836AA Human Human Human(Blood) 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX3; Cluster: A1 PRJEB1944 ERP001848 SAMEA1889087 ERS180311 27/08/2015 27/05/2013 NaN 29306 SAL_CA0832AA 3 2005 Ireland Outbreak 5 SAL_CA0832AA Human Human Human(Feces) 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX3; Cluster: A1 PRJEB1944 ERP001848 SAMEA1889065 ERS180313 27/08/2015 27/05/2013 NaN 29307 SAL_CA0830AA 4 2005 Ireland Outbreak 5 SAL_CA0830AA Human Human Human(Feces) 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX3; Cluster: A1 PRJEB1944 ERP001848 SAMEA1889043 ERS180314 27/08/2015 27/05/2013 NaN 29308 SAL_CA0828AA 5 2005 Ireland Outbreak 6 SAL_CA0828AA Human Human Human(Feces) 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX3; Cluster: A1 PRJEB1944 ERP001848 SAMEA1889023 ERS180315 27/08/2015 27/05/2013 NaN 29310 SAL_CA0826AA 6 2005 Ireland Outbreak 5 SAL_CA0826AA Human Human Human(Feces) 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX3; Cluster: A1 PRJEB1944 ERP001848 SAMEA1889077 ERS180316 27/08/2015 27/05/2013 NaN 29312 SAL_CA0824AA 7 2005 Ireland Outbreak 5 SAL_CA0824AA Human Human Human(Feces) 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX3; Cluster: A1 PRJEB1944 ERP001848 SAMEA1889061 ERS180317 27/08/2015 27/05/2013 NaN 29314 SAL_CA0822AA 8 2005 Ireland Animal 5 SAL_CA0822AA Livestock Bovine ND 2005 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: A2 PRJEB1944 ERP001848 SAMEA1889048 ERS180318 27/08/2015 27/05/2013 NaN 29316 SAL_CA0820AA 9 2005 Animal Ireland Food 8 SAL_CA0820AA Poultry Avian Meat 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: A2 PRJEB1944 ERP001848 SAMEA1889053 ERS180319 27/08/2015 27/05/2013 NaN 29317 SAL_CA0818AA 10 2005 Animal Ireland Animal 5 SAL_CA0818AA Poultry Avian ND 2005 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: A2 PRJEB1944 ERP001848 SAMEA1889057 ERS180320 27/08/2015 27/05/2013 NaN 29319 SAL_CA0816AA 11 2005 Animal Ireland Animal 5 SAL_CA0816AA Poultry Avian ND 2005 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: A2 PRJEB1944 ERP001848 SAMEA1889059 ERS180321 27/08/2015 27/05/2013 NaN 29321 SAL_CA0814AA 12 2005 Animal Ireland Animal 6 SAL_CA0814AA Poultry Avian ND 2006 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: A2 PRJEB1944 ERP001848 SAMEA1889081 ERS180322 27/08/2015 27/05/2013 NaN 29323 SAL_CA0812AA 14 2005 Animal Ireland Environment 5 SAL_CA0812AA Environment Soil/Dust Environment(Poultrydust) 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX50; Cluster: A2 PRJEB1944 ERP001848 SAMEA1889044 ERS180324 27/08/2015 27/05/2013 NaN 29325 SAL_CA0810AA 15 Unspecified Human 3 SAL_CA0810AA Human Human ND 2003 Europe Denmark Agona I M. Achtman PFGE: AgoX81 PRJEB1944 ERP001848 SAMEA1889029 ERS180325 27/08/2015 27/05/2013 NaN 29327 SAL_CA0808AA 16 Unspecified Human 8 SAL_CA0808AA Human Human Human(Feces) 2008 Europe United Kingdom Scotland Agona I M. Achtman PFGE: AgoX59 PRJEB1944 ERP001848 SAMEA1889078 ERS180326 27/08/2015 27/05/2013 NaN 29328 SAL_CA0806AA 17 Unspecified Human 6 SAL_CA0806AA Human Human Human(Feces) 2006 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0022 PRJEB1944 ERP001848 SAMEA1889075 ERS180327 27/08/2015 27/05/2013 NaN 29330 SAL_CA0804AA 18 Unspecified Human 7 SAL_CA0804AA Human Human ND 2007 Europe Denmark Agona I M. Achtman PFGE: SAGOXB.0005 PRJEB1944 ERP001848 SAMEA1889052 ERS180328 27/08/2015 27/05/2013 NaN 29332 SAL_CA0802AA 19 Unspecified Food 3 SAL_CA0802AA Food Plant Food(Fennel) 2003 Europe Germany Agona I M. Achtman PFGE: SAGOXB.0002b PRJEB1944 ERP001848 SAMEA1889034 ERS180329 27/08/2015 27/05/2013 NaN 29333 SAL_CA0800AA 20 Unspecified Human 6 SAL_CA0800AA Human Human Human(Feces) 2006 Europe United Kingdom Scotland Agona I M. Achtman PFGE: AgoX31 PRJEB1944 ERP001848 SAMEA1889030 ERS180330 27/08/2015 27/05/2013 NaN 29335 SAL_CA0798AA 21 Unspecified Human 10 SAL_CA0798AA Human Human Human(Feces) 2010 Europe Germany Agona I M. Achtman PFGE: AgoX75 PRJEB1944 ERP001848 SAMEA1889083 ERS180331 27/08/2015 27/05/2013 NaN 29337 SAL_CA0796AA 22 Unspecified Human 4 SAL_CA0796AA Human Human Human(Feces) 2004 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0024b PRJEB1944 ERP001848 SAMEA1889068 ERS180332 27/08/2015 27/05/2013 NaN 29339 SAL_CA0794AA 23 Unspecified Food 1 SAL_CA0794AA Food Plant Food(Curry) 2001 Europe Germany Agona I M. Achtman PFGE: AgoX80 PRJEB1944 ERP001848 SAMEA1889055 ERS180333 27/08/2015 27/05/2013 NaN 29341 SAL_CA0793AA 24 Unspecified Human 4 SAL_CA0793AA Human Human ND 2004 Asia Taiwan Agona I M. Achtman PFGE: AgoX78 PRJEB1944 ERP001848 SAMEA1889038 ERS180334 27/08/2015 27/05/2013 NaN 29342 SAL_CA0788AA 27 1998 USA Outbreak 98 SAL_CA0788AA Human Human ND 1998 North America United States Agona I M. Achtman PFGE: SAGOXB.0024a; Cluster: B1 PRJEB1944 ERP001848 SAMEA1889082 ERS180336 27/08/2015 27/05/2013 NaN 29346 SAL_CA0786AA 28 1998 USA Outbreak 8 SAL_CA0786AA Human Human 2008 North America United States Agona I M. Achtman PFGE: SAGOXB.0024a; Cluster: B2 PRJEB1944 ERP001848 SAMEA1889058 ERS180337 27/08/2015 27/05/2013 NaN 29348 SAL_CA0785AA 29 1998 USA Outbreak 8 SAL_CA0785AA Human Human 2008 North America United States Agona I M. Achtman PFGE: SAGOXB.0024a; Cluster: B2 PRJEB1944 ERP001848 SAMEA1889056 ERS180338 27/08/2015 27/05/2013 NaN 29349 SAL_CA0783AA 30 Unspecified Human 4 SAL_CA0783AA Human Human Human(Feces) 2004 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0024b PRJEB1944 ERP001848 SAMEA1889035 ERS180339 27/08/2015 27/05/2013 NaN 29351 SAL_CA0781AA 31 Unspecified Human 9 SAL_CA0781AA Human Human Human(Feces) 2009 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0002 PRJEB1944 ERP001848 SAMEA1889033 ERS180340 27/08/2015 27/05/2013 NaN 29353 SAL_CA0779AA 32 Unspecified Animal 0 SAL_CA0779AA Livestock Camelid ND 2000 Asia United Arab Emirates Agona I M. Achtman PFGE: SAGOXB.0002a PRJEB1944 ERP001848 SAMEA1889086 ERS180341 27/08/2015 27/05/2013 NaN 29355 SAL_CA0777AA 33 Unspecified Animal 5 SAL_CA0777AA Wild Animal Avian Animal(Gyrfalcon) 2005 Asia United Arab Emirates Agona I M. Achtman PFGE: SAGOXB.0002a PRJEB1944 ERP001848 SAMEA1889071 ERS180342 27/08/2015 27/05/2013 NaN 29357 SAL_CA0775AA 34 Unspecified Human 9 SAL_CA0775AA Human Human Human(Urine) 2009 Europe United Kingdom Scotland Agona I M. Achtman PFGE: AgoX51 PRJEB1944 ERP001848 SAMEA1889042 ERS180343 27/08/2015 27/05/2013 NaN 29359 SAL_CA0773AA 35 Unspecified Human 8 SAL_CA0773AA Human Human ND 2008 Asia Taiwan Agona I M. Achtman PFGE: AgoX82 PRJEB1944 ERP001848 SAMEA1889027 ERS180344 27/08/2015 27/05/2013 NaN 29361 SAL_CA0771AA 36 Unspecified Human 0 SAL_CA0771AA Human Human Human(Feces) 2000 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0020 PRJEB1944 ERP001848 SAMEA1889084 ERS180345 27/08/2015 27/05/2013 NaN 29362 SAL_CA0769AA 37 2003 Germany Food 2 SAL_CA0769AA Food Plant Food(Aniseed) 2002 Europe Germany Agona I M. Achtman PFGE: SAGOXB.0010; Cluster: C PRJEB1944 ERP001848 SAMEA1889085 ERS180346 27/08/2015 27/05/2013 NaN 29364 SAL_CA0767AA 38 2003 Germany Outbreak 3 SAL_CA0767AA Human Human Human(Feces) 2003 Europe Germany Agona I M. Achtman PFGE: SAGOXB.0010; Cluster: C PRJEB1944 ERP001848 SAMEA1889070 ERS180347 27/08/2015 27/05/2013 NaN 29366 SAL_CA0764AA 40 Unspecified Environment 8 SAL_CA0764AA Environment ND ND 2008 Europe Ireland Agona I M. Achtman PFGE: AgoX65 PRJEB1944 ERP001848 SAMEA1889037 ERS180349 27/08/2015 27/05/2013 NaN 29368 SAL_CA0762AA 41 Unspecified Environment 9 SAL_CA0762AA Environment Water Environment(Wastewater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889036 ERS180350 27/08/2015 27/05/2013 NaN 29370 SAL_CA0760AA 42 2008-9 International Environment 9 SAL_CA0760AA Environment Water Environment(Wastewater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889024 ERS180351 27/08/2015 27/05/2013 NaN 29372 SAL_CA0758AA 43 2008-9 International Environment 9 SAL_CA0758AA Environment Water Environment(Wasterwater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889046 ERS180352 27/08/2015 27/05/2013 NaN 29374 SAL_CA0756AA 44 2008-9 International Environment 9 SAL_CA0756AA Environment Water Environment(Wastewater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889063 ERS180353 27/08/2015 27/05/2013 NaN 29375 SAL_CA0754AA 45 2008-9 International Environment 9 SAL_CA0754AA Environment Water Environment(Wastewater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889088 ERS180354 27/08/2015 27/05/2013 NaN 29378 SAL_CA0753AA 46 2008-9 International Environment 9 SAL_CA0753AA Environment Water Environment(Wastewater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889093 ERS180355 27/08/2015 27/05/2013 NaN 29379 SAL_CA0750AA 47 2008-9 International Environment 9 SAL_CA0750AA Environment Water Environment(Wastewater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889073 ERS180356 27/08/2015 27/05/2013 NaN 29382 SAL_CA0748AA 48 2008-9 International Environment 8 SAL_CA0748AA Environment ND ND 2008 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889062 ERS180357 27/08/2015 27/05/2013 NaN 29383 SAL_CA0746AA 49 2008-9 International Environment 9 SAL_CA0746AA Environment Water Environment(Wasterwater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889041 ERS180358 27/08/2015 27/05/2013 NaN 29385 SAL_CA0742AA 51 2008-9 International Environment 9 SAL_CA0742AA Environment Water Environment(Wastewater) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX67; Cluster: D1 PRJEB1944 ERP001848 SAMEA1889032 ERS180360 27/08/2015 27/05/2013 NaN 29387 SAL_CA0740AA 52 2008-9 International Food 8 SAL_CA0740AA Food Swine Food(Pork) 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889051 ERS180361 27/08/2015 27/05/2013 NaN 29388 SAL_CA0738AA 53 2008-9 International Food 8 SAL_CA0738AA Food Swine Food(Pork) 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889045 ERS180362 27/08/2015 27/05/2013 NaN 29390 SAL_CA0736AA 54 2008-9 International Outbreak 8 SAL_CA0736AA Human Human Human(Feces) 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889072 ERS180363 27/08/2015 27/05/2013 NaN 29392 SAL_CA0734AA 55 2008-9 International Unknown 8 SAL_CA0734AA 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889091 ERS180364 27/08/2015 27/05/2013 NaN 29394 SAL_CA0731AA 56 2008-9 International Outbreak 8 SAL_CA0731AA Human Human Human(Feces) 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889025 ERS180365 27/08/2015 27/05/2013 NaN 29397 SAL_CA0729AA 57 2008-9 International Animal 8 SAL_CA0729AA Livestock Swine ND 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889047 ERS180366 27/08/2015 27/05/2013 NaN 29399 SAL_CA0727AA 58 2008-9 International Environment 8 SAL_CA0727AA Environment Water Environment(Water) 2008 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889060 ERS180367 27/08/2015 27/05/2013 NaN 29401 SAL_CA0725AA 59 2008-9 International Food 8 SAL_CA0725AA Food Swine Food(Pepperoni) 2008 Europe Ireland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889074 ERS180368 27/08/2015 27/05/2013 NaN 29402 SAL_CA0723AA 60 2008-9 International Outbreak 8 SAL_CA0723AA Human Human Human(Feces) 2008 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889092 ERS180369 27/08/2015 27/05/2013 NaN 29403 SAL_CA0721AA 61 2008-9 International Outbreak 8 SAL_CA0721AA Human Human Human(Feces) 2008 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0066; Cluster: D2 PRJEB1944 ERP001848 SAMEA1889039 ERS180370 27/08/2015 27/05/2013 NaN 29405 SAL_CA0719AA 62 Unspecified Human 72 SAL_CA0719AA Human Human ND 1972 Europe United Kingdom England Agona I M. Achtman PFGE: AgoX79 PRJEB1944 ERP001848 SAMEA1889050 ERS180371 27/08/2015 27/05/2013 NaN 29407 SAL_CA0717AA 63 Unspecified Human 87 SAL_CA0717AA Human Human ND 1987 Agona I M. Achtman PFGE: AgoX76 PRJEB1944 ERP001848 SAMEA1889066 ERS180372 27/08/2015 27/05/2013 NaN 29409 SAL_CA0715AA 64 Unspecified Human 0 SAL_CA0715AA Human Human Human(Feces) 2000 Europe United Kingdom Scotland Agona I M. Achtman PFGE: AgoX83 PRJEB1944 ERP001848 SAMEA1889064 ERS180373 27/08/2015 27/05/2013 NaN 29410 SAL_CA0713AA 65 Unspecified Human 72 SAL_CA0713AA Human Human ND 1972 Europe United Kingdom England Agona I M. Achtman PFGE: SAGOXB.0024c PRJEB1944 ERP001848 SAMEA1889079 ERS180374 27/08/2015 27/05/2013 NaN 29412 SAL_CA0711AA 66 Unspecified Food 99 SAL_CA0711AA Food ND ND 1999 Europe Germany Agona I M. Achtman PFGE: AgoX77 PRJEB1944 ERP001848 SAMEA1889026 ERS180375 27/08/2015 27/05/2013 NaN 29414 SAL_CA0709AA 67 Unspecified Human 9 SAL_CA0709AA Human Human Human(Feces) 2009 Europe Ireland Agona I M. Achtman PFGE: AgoX64 PRJEB1944 ERP001848 SAMEA1889049 ERS180376 27/08/2015 27/05/2013 NaN 29416 SAL_CA0707AA 68 Unspecified Unknown 5 SAL_CA0707AA 2005 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0009 PRJEB1944 ERP001848 SAMEA1889076 ERS180377 27/08/2015 27/05/2013 NaN 29418 SAL_CA0705AA 69 Unspecified Human 6 SAL_CA0705AA Human Human Human(Feces) 2006 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0070 PRJEB1944 ERP001848 SAMEA1889090 ERS180378 27/08/2015 27/05/2013 NaN 29420 SAL_CA0702AA 70 Unspecified Environment 5 SAL_CA0702AA Environment ND ND 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX63 PRJEB1944 ERP001848 SAMEA1889080 ERS180379 27/08/2015 27/05/2013 NaN 29422 SAL_CA0700AA 71 Long Branches Environment 5 SAL_CA0700AA Environment ND ND 2005 Europe Ireland Agona I M. Achtman PFGE: AgoX89; Cluster: E PRJEB1944 ERP001848 SAMEA1889067 ERS180380 27/08/2015 27/05/2013 NaN 29424 SAL_CA0698AA 72 Long Branches Animal 52 SAL_CA0698AA Livestock Bovine ND 1952 Africa Ghana Agona I M. Achtman PFGE: AgoX90; Cluster: E PRJEB1944 ERP001848 SAMEA1889089 ERS180381 27/08/2015 27/05/2013 NaN 29426 SAL_CA0696AA 73 Long Branches Human 9 SAL_CA0696AA Human Human Human(Urine) 2009 Europe United Kingdom Scotland Agona I M. Achtman PFGE: SAGOXB.0013; Cluster: F PRJEB1944 ERP001848 SAMEA1889031 ERS180382 27/08/2015 27/05/2013 NaN 29428