DigitRubber Ontology
type: Ontology
version IRI: digitrubber-full.owl
description: DigitRubber Ontology
license: unspecified
date: 01:06:2023 08:05
version info: 2023-06-01

example of usage
type: AnnotationProperty
IAO_0000111: example of usage
has curation status: ready for release
definition: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
IAO_0000117: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

has curation status
type: AnnotationProperty
IAO_0000111: has curation status
IAO_0000117: PERSON:Alan Ruttenberg
IAO_0000117: PERSON:Bill Bug
IAO_0000117: PERSON:Melanie Courtot

definition
type: AnnotationProperty
IAO_0000111: definition
IAO_0000111: textual definition
has curation status: ready for release
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
IAO_0000116: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
IAO_0000117: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: textual definition

alternative term
type: AnnotationProperty
IAO_0000111: alternative term
has curation status: pending final vetting
definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
IAO_0000117: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

definition source
type: AnnotationProperty
IAO_0000111: definition source
has curation status: ready for release
definition: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
IAO_0000117: PERSON:Daniel Schober
definition source: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

imported from
type: AnnotationProperty
IAO_0000111: imported from
has curation status: pending final vetting
definition: For external terms/classes, the ontology from which the term was imported
IAO_0000117: PERSON:Alan Ruttenberg
IAO_0000117: PERSON:Melanie Courtot
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

ISA alternative term
type: AnnotationProperty
IAO_0000111: ISA alternative term
has curation status: ready for release
definition: An alternative term used by the ISA tools project (http://isa-tools.org).
IAO_0000116: Requested by Alejandra Gonzalez-Beltran https://sourceforge.net/tracker/?func=detail&aid=3603413&group_id=177891&atid=886178
IAO_0000117: Person: Alejandra Gonzalez-Beltran
IAO_0000117: Person: Philippe Rocca-Serra
definition source: ISA tools project (http://isa-tools.org)

IEDB alternative term
type: AnnotationProperty
IAO_0000111: IEDB alternative term
has curation status: ready for release
definition: An alternative term used by the IEDB.
IAO_0000117: PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters
definition source: IEDB

temporal interpretation
type: AnnotationProperty
definition: An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.

logical macro assertion on an annotation property
type: AnnotationProperty

is direct form of
type: AnnotationProperty
definition: relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y
IAO_0000116: The general property hierarchy is: "directly P" SubPropertyOf "P" Transitive(P) Where we have an annotation assertion "directly P" "is direct form of" "P"
logical macro assertion on an annotation property: If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'
creator: https://orcid.org/0000-0002-6601-2165

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

is positive form of
type: AnnotationProperty
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-03-14T00:03:16Z

is negative form of
type: AnnotationProperty
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-03-14T00:03:24Z

is homeomorphic for
type: AnnotationProperty
example of usage: part-of is homeomorphic for independent continuants.
definition: R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C.
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-10-21T19:46:34Z
comment: R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C.

Contributor
type: AnnotationProperty
description: Examples of a Contributor include a person, an organisation, or a service. Typically, the name of a Contributor should be used to indicate the entity.
comment: An entity responsible for making contributions to the content of the resource.

Language
type: AnnotationProperty
description: Recommended best practice is to use RFC 3066 [RFC3066], which, in conjunction with ISO 639 [ISO639], defines two- and three-letter primary language tags with optional subtags. Examples include "en" or "eng" for English, "akk" for Akkadian, and "en-GB" for English used in the United Kingdom.
comment: A language of the intellectual content of the resource.

description
type: AnnotationProperty

license
type: AnnotationProperty
IAO_0000117: Mark Miller
date: 2018-05-11T13:47:29Z

title
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

in_subset
type: AnnotationProperty

part of
type: ObjectProperty
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
IAO_0000111: is part of
example of usage: my brain is part of my body (continuant parthood, two material entities)
example of usage: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
example of usage: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
IAO_0000116: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
alternative term: part_of
temporal interpretation: RO_0001901
is homeomorphic for: continuant
is homeomorphic for: occurrent
is homeomorphic for: independent continuant
is homeomorphic for: realizable entity
is homeomorphic for: quality
is homeomorphic for: specifically dependent continuant
is homeomorphic for: generically dependent continuant
in_subset: valid for go annotation extension
in_subset: valid for go gp2term
in_subset: valid for go ontology
in_subset: valid for gocam

has part
type: ObjectProperty
sub property of: overlaps
type: TransitiveProperty
IAO_0000111: has part
example of usage: my body has part my brain (continuant parthood, two material entities)
example of usage: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
example of usage: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
IAO_0000116: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
alternative term: has_part
temporal interpretation: RO_0001901
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

realized in
type: ObjectProperty
inverse of: realizes
domain: realizable entity
range: process
IAO_0000111: realized in
example of usage: this disease is realized in this disease course
example of usage: this fragility is realized in this shattering
example of usage: this investigator role is realized in this investigation
alternative term: is realized by
alternative term: realized_in
IAO_0000600: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

realizes
type: ObjectProperty
domain: process
range: realizable entity
IAO_0000111: realizes
example of usage: this disease course realizes this disease
example of usage: this investigation realizes this investigator role
example of usage: this shattering realizes this fragility
IAO_0000600: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

preceded by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
IAO_0000111: preceded by
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
IAO_0000116: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
alternative term: is preceded by
alternative term: preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
in_subset: ro-eco

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
IAO_0000111: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
in_subset: ro-eco

is about
type: ObjectProperty
domain: information content entity
example of usage: This document is about information artifacts and their representations
has curation status: pending final vetting
definition: A (currently) primitive relation that relates an information artifact to an entity.
IAO_0000116: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
IAO_0000117: person:Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

has_specified_input
type: ObjectProperty
equivalent property:
  inverse of: is_specified_input_of
sub property of: has participant
inverse of: is_specified_input_of
domain: planned process
IAO_0000111: has_specified_input
example of usage: see is_input_of example_of_usage
has curation status: ready for release
definition: The inverse property of is_specified_input_of
IAO_0000116: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Larry Hunter
IAO_0000117: PERSON: Melanie Coutot
imported from: obi.owl

is_specified_input_of
type: ObjectProperty
sub property of: participates in
range: planned process
IAO_0000111: is_specified_input_of
example of usage: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
IAO_0000117: Alan Ruttenberg
IAO_0000117: PERSON:Bjoern Peters

has_specified_output
type: ObjectProperty
equivalent property:
  inverse of: is_specified_output_of
sub property of: has participant
inverse of: is_specified_output_of
domain: planned process
IAO_0000111: has_specified_output
has curation status: ready for release
definition: The inverse property of is_specified_output_of
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Larry Hunter
IAO_0000117: PERSON: Melanie Courtot
imported from: obi.owl

is_specified_output_of
type: ObjectProperty
sub property of: participates in
range: planned process
IAO_0000111: is_specified_output_of
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
IAO_0000117: Alan Ruttenberg
IAO_0000117: PERSON:Bjoern Peters
imported from: obi.owl

achieves_planned_objective
type: ObjectProperty
inverse of: objective_achieved_by
domain: planned process
range: objective specification
IAO_0000111: achieves_planned_objective
example of usage: A cell sorting process achieves the objective specification 'material separation objective'
has curation status: metadata complete
definition: This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
IAO_0000117: BP, AR, PPPB branch
definition source: PPPB branch derived
IAO_0000232: modified according to email thread from 1/23/09 in accordince with DT and PPPB branch

objective_achieved_by
type: ObjectProperty
domain: objective specification
range: planned process
IAO_0000111: objective_achieved_by
has curation status: ready for release
definition: This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
IAO_0000117: OBI
definition source: OBI

has value specification
type: ObjectProperty
sub property of: has part
domain: information content entity
range: value specification
IAO_0000111: has value specification
has curation status: metadata complete
definition: A relation between an information content entity and a value specification that specifies its value.
IAO_0000117: PERSON: James A. Overton
definition source: OBI

characteristic of
type: ObjectProperty
inverse of: bearer of
type: FunctionalProperty
IAO_0000111: inheres in
example of usage: this fragility inheres in this vase
example of usage: this fragility is a characteristic of this vase
example of usage: this red color inheres in this apple
example of usage: this red color is a characteristic of this apple
definition: a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
definition: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
IAO_0000116: A dependent inheres in its bearer at all times for which the dependent exists.
alternative term: inheres_in
temporal interpretation: RO_0001901
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
label: inheres in

bearer of
type: ObjectProperty
type: InverseFunctionalProperty
range: specifically dependent continuant
IAO_0000111: bearer of
example of usage: this apple is bearer of this red color
example of usage: this vase is bearer of this fragility
definition: Inverse of characteristic_of
definition: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
alternative term: bearer_of
alternative term: is bearer of
temporal interpretation: RO_0001901
label: has characteristic

participates in
type: ObjectProperty
inverse of: has participant
domain: continuant
range: occurrent
IAO_0000111: participates in
example of usage: this blood clot participates in this blood coagulation
example of usage: this input material (or this output material) participates in this process
example of usage: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
alternative term: participates_in

has participant
type: ObjectProperty
domain: occurrent
range: continuant
property chain axiom: has part
IAO_0000111: has participant
example of usage: this blood coagulation has participant this blood clot
example of usage: this investigation has participant this investigator
example of usage: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
IAO_0000116: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
alternative term: has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
inverse of: concretizes
domain: generically dependent continuant
range: specifically dependent continuant
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.

concretizes
type: ObjectProperty
domain: specifically dependent continuant
range: generically dependent continuant
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.

function of
type: ObjectProperty
sub property of: characteristic of
inverse of: has function
domain: function
example of usage: this catalysis function is a function of this enzyme
definition: a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
IAO_0000116: A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
alternative term: function_of
alternative term: is function of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

quality of
type: ObjectProperty
sub property of: characteristic of
inverse of: has quality
example of usage: this red color is a quality of this apple
definition: a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
IAO_0000116: A quality inheres in its bearer at all times for which the quality exists.
alternative term: is quality of
alternative term: quality_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

role of
type: ObjectProperty
sub property of: characteristic of
inverse of: has role
example of usage: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
IAO_0000116: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
alternative term: is role of
alternative term: role_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has function
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: function
example of usage: this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
definition: a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
alternative term: has_function

has quality
type: ObjectProperty
sub property of: bearer of
range: quality
example of usage: this apple has quality this red color
definition: a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
alternative term: has_quality

has role
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: role
example of usage: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
alternative term: has_role

has disposition
type: ObjectProperty
sub property of: bearer of
inverse of: disposition of
domain: independent continuant
range: disposition
definition: a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence

disposition of
type: ObjectProperty
sub property of: characteristic of
definition: inverse of has disposition
in_subset: RO_0002259
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has regulatory component activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulated by
definition: A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
created by: dos
creation date: 2017-05-24T09:30:46Z

has negative regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: negatively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:01Z
comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has positive regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: positively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
created by: dos
creation date: 2017-05-24T09:31:17Z
comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has component activity
type: ObjectProperty
sub property of: has component process
created by: dos
creation date: 2017-05-24T09:44:33Z
comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has component process
type: ObjectProperty
sub property of: has component
domain: process
range: process
definition: w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
created by: dos
creation date: 2017-05-24T09:49:21Z

directly regulated by
type: ObjectProperty
sub property of: regulated by
inverse of: directly regulates
created by: dos
creation date: 2017-09-17T13:52:24Z
comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
has db xref: GOC:dos

directly negatively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly negatively regulates
definition: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:38Z

Axiom
annotated source: directly negatively regulated by
annotated property: definition
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
has db xref: GOC:dos

directly positively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly positively regulates
definition: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
created by: dos
creation date: 2017-09-17T13:52:47Z

Axiom
annotated source: directly positively regulated by
annotated property: definition
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
has db xref: GOC:dos

has effector activity
type: ObjectProperty
sub property of: has component activity
type: FunctionalProperty
definition: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
created by: dos
creation date: 2017-09-22T14:14:36Z
comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

Axiom
annotated source: has effector activity
annotated property: definition
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
has db xref: GOC:dos

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
IAO_0000117: David Osumi-Sutherland
in_subset: ro-eco
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately preceded by
type: ObjectProperty
sub property of: preceded by
inverse of: immediately precedes
IAO_0000117: David Osumi-Sutherland
alternative term: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

immediately precedes
type: ObjectProperty
sub property of: precedes
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000117: David Osumi-Sutherland
alternative term: ends_at_start_of
alternative term: meets
is direct form of: precedes
in_subset: ro-eco
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

overlaps
type: ObjectProperty
type: SymmetricProperty
property chain axiom: part of
property chain axiom: has part
has curation status: pending final vetting
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
temporal interpretation: RO_0001901
in_subset: valid for go annotation extension
in_subset: valid for gocam
in_subset: ro-eco

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
RO_0002582: true

has component
type: ObjectProperty
sub property of: has part
has curation status: pending final vetting
definition: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
IAO_0000116: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
IAO_0000232: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
temporal interpretation: RO_0001901
in_subset: ro-eco

regulates
type: ObjectProperty
sub property of: causally upstream of
inverse of: regulated by
type: TransitiveProperty
domain: process
range: process
property chain axiom: has effector activity
property chain axiom: directly regulates
definition: p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q.
IAO_0000117: https://orcid.org/0000-0001-7476-6306
IAO_0000117: https://orcid.org/0000-0002-3837-8864
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
definition source: GO
IAO_0000232: Regulation precludes parthood; the regulatory process may not be within the regulated process.
IAO_0000589: regulates (processual)
IAO_0000600: false
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

negatively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, negative effect
inverse of: negatively regulated by
definition: p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
IAO_0000589: negatively regulates (process to process)
is negative form of: regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

positively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, positive effect
inverse of: positively regulated by
type: TransitiveProperty
property chain axiom: negatively regulates
definition: p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
IAO_0000589: positively regulates (process to process)
is positive form of: regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

capable of
type: ObjectProperty
sub property of: capable of part of
domain: independent continuant
range: process
example of usage: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
example of usage: osteoclast SubClassOf 'capable of' some 'bone resorption'
definition: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: has function realized in
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20123131
definition source: http://www.ncbi.nlm.nih.gov/pubmed/21208450
IAO_0000232: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
in_subset: ro-eco

capable of part of
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: part of
definition: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: has function in

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: part of
RO_0002582: true

temporally related to
type: ObjectProperty
domain: occurrent
range: occurrent
has curation status: pending final vetting
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: Allen's interval algebra
IAO_0000232: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in_subset: ro-eco
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
has curation status: pending final vetting
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: consumes
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: ro-eco

acts upstream of
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of
example of usage: A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
definition: c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
in_subset: valid for go gp2term

acts upstream of or within
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: enables
property chain axiom: causally upstream of or within
example of usage: A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
definition: c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
has_related_synonym: affects
in_subset: valid for go gp2term

causally upstream of, positive effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, positive effect
definition: p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.
is positive form of: causally upstream of
creator: https://orcid.org/0000-0002-6601-2165
in_subset: valid for go annotation extension
in_subset: valid for gocam
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

causally upstream of, negative effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, negative effect
definition: p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.
is negative form of: causally upstream of
creator: https://orcid.org/0000-0002-6601-2165
in_subset: valid for go annotation extension
in_subset: valid for gocam

enables
type: ObjectProperty
sub property of: capable of
inverse of: enabled by
property chain axiom: has part
property chain axiom: has component activity
example of usage: a particular instances of akt-2 enables some instance of protein kinase activity
definition: c enables p iff c is capable of p and c acts to execute p.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: catalyzes
alternative term: executes
alternative term: has
alternative term: is catalyzing
alternative term: is executing
IAO_0000232: This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
in_subset: valid for go gp2term

involved in
type: ObjectProperty
sub property of: participates in
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: part of
definition: c involved_in p if and only if c enables some process p', and p' is part of p
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: actively involved in
alternative term: enables part of

enabled by
type: ObjectProperty
sub property of: has participant
definition: inverse of enables
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in_subset: valid for gocam

regulated by
type: ObjectProperty
sub property of: causally downstream of or within
type: TransitiveProperty
domain: process
range: process
definition: inverse of regulates
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000589: regulated by (processual)
in_subset: RO_0002259

negatively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of negatively regulates
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259

positively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of positively regulates
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259

member of
type: ObjectProperty
sub property of: part of
inverse of: has member
example of usage: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
alternative term: is member of
alternative term: member part of
definition source: SIO
temporal interpretation: RO_0001901

has member
type: ObjectProperty
sub property of: has part
type: IrreflexiveProperty
definition: has member is a mereological relation between a collection and an item.
definition source: SIO
temporal interpretation: RO_0001901

input of
type: ObjectProperty
sub property of: participates in
definition: inverse of has input
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259
in_subset: ro-eco

causally downstream of
type: ObjectProperty
sub property of: preceded by
sub property of: causally downstream of or within
inverse of: causally upstream of
has curation status: requires discussion
definition: inverse of upstream of
IAO_0000117: https://orcid.org/0000-0002-6601-2165

immediately causally downstream of
type: ObjectProperty
sub property of: immediately preceded by
sub property of: causally downstream of
inverse of: immediately causally upstream of
has curation status: requires discussion
IAO_0000117: https://orcid.org/0000-0002-6601-2165

indirectly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: indirectly regulates
type: TransitiveProperty
property chain axiom: directly positively regulates
property chain axiom: indirectly negatively regulates
definition: p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: indirectly activates
RO_0002579: positively regulates

indirectly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: indirectly regulates
type: TransitiveProperty
property chain axiom: directly negatively regulates
definition: p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: indirectly inhibits
RO_0002579: negatively regulates

causally upstream of
type: ObjectProperty
sub property of: precedes
sub property of: causally upstream of or within
type: TransitiveProperty
definition: p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in_subset: valid for go annotation extension
in_subset: valid for gocam

immediately causally upstream of
type: ObjectProperty
sub property of: immediately precedes
sub property of: causally upstream of
definition: p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
is direct form of: causally upstream of

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
definition: p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
IAO_0000116: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: influences (processual)
has_related_synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
in_subset: RO_0002259

involved in regulation of
type: ObjectProperty
sub property of: acts upstream of
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' regulates some p
IAO_0000117: https://orcid.org/0000-0002-6601-2165

involved in positive regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: positively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' positively regulates some p
IAO_0000117: https://orcid.org/0000-0002-6601-2165
is positive form of: involved in regulation of

involved in negative regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: negatively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
IAO_0000117: https://orcid.org/0000-0002-6601-2165
is negative form of: involved in regulation of

involved in or involved in regulation of
type: ObjectProperty
sub property of: acts upstream of or within
sub property of: causal agent in process
definition: c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
IAO_0000116: OWL does not allow defining object properties via a Union
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: involved in or reguates

interacts with
type: ObjectProperty
type: SymmetricProperty
domain: material entity
range: material entity
definition: A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
IAO_0000116: This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
IAO_0000116: Considering relabeling as 'pairwise interacts with'
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
has_exact_synonym: in pairwise interaction with
in_subset: ro-eco

molecularly interacts with
type: ObjectProperty
sub property of: interacts with
type: SymmetricProperty
definition: An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: binds
alternative term: molecularly binds with

phosphorylates
type: ObjectProperty
sub property of: molecularly interacts with
IAO_0000116: Axiomatization to GO to be added later
IAO_0000117: https://orcid.org/0000-0002-6601-2165
alternative term: An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.

directly regulates activity of
type: ObjectProperty
sub property of: molecularly interacts with
sub property of: regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0003-4639-4431
has_exact_synonym: molecularly controls

directly negatively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly negatively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0003-4639-4431
alternative term: directly inhibits
has_exact_synonym: molecularly decreases activity of

directly positively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly positively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0003-4639-4431
alternative term: directly activates
has_exact_synonym: molecularly increases activity of

causal agent in process
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: process has causal agent
definition: A relationship between a material entity and a process where the material entity has some causal role that influences the process
definition source: causal-relations

causal relation between processes
type: ObjectProperty
domain: occurrent
range: occurrent
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causal relation between entities
type: ObjectProperty
domain: continuant
range: continuant
IAO_0000116: The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causally influenced by
type: ObjectProperty
sub property of: causal relation between entities
inverse of: causally influences
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
IAO_0000589: causally influenced by (entity-centric)

causally influences
type: ObjectProperty
sub property of: causal relation between entities
domain: continuant
range: continuant
property chain axiom: enables
property chain axiom: causally upstream of
property chain axiom: has input
property chain axiom: enabled by
definition: The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0003-4639-4431
definition source: causal-relations
IAO_0000589: causally influences (entity-centric)

directly regulates
type: ObjectProperty
sub property of: regulates
sub property of: immediately causally upstream of
definition: p directly regulates q iff p is immediately causally upstream of q and p regulates q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
IAO_0000589: directly regulates (processual)
is direct form of: regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

has part structure that is capable of
type: ObjectProperty
sub property of: causal relation between material entity and a process
property chain axiom: has part
property chain axiom: capable of
example of usage: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
definition: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
IAO_0000117: https://orcid.org/0000-0002-6601-2165

causal relation between material entity and a process
type: ObjectProperty
domain: material entity
range: process
definition: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
IAO_0000116: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations

capable of regulating
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: regulates
example of usage: pyrethroid -> growth
definition: Holds between c and p if and only if c is capable of some activity a, and a regulates p.
definition source: causal-relations

capable of negatively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: negatively regulates
definition: Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
definition source: causal-relations

capable of positively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: positively regulates
example of usage: renin -> arteriolar smooth muscle contraction
definition: Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
definition source: causal-relations

process has causal agent
type: ObjectProperty
definition: Inverse of 'causal agent in process'
definition source: causal-relations

directly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: directly regulates
definition: p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.
definition source: causal-relations
IAO_0000589: directly positively regulates (process to process)
is positive form of: directly regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

directly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: directly regulates
definition: p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.
definition source: causal-relations
IAO_0000589: directly negatively regulates (process to process)
is negative form of: directly regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

acts upstream of or within, positive effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, positive effect
is positive form of: acts upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:49:30Z
in_subset: valid for go gp2term

acts upstream of or within, negative effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, negative effect
is negative form of: acts upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:49:51Z
in_subset: valid for go gp2term

acts upstream of, positive effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, positive effect
property chain axiom: enables
property chain axiom: causally upstream of, positive effect
definition: c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
is positive form of: acts upstream of
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:53:14Z
in_subset: valid for go gp2term

acts upstream of, negative effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, negative effect
property chain axiom: enables
property chain axiom: causally upstream of, negative effect
definition: c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
is negative form of: acts upstream of
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:53:22Z
in_subset: valid for go gp2term

causally upstream of or within, negative effect
type: ObjectProperty
sub property of: causally upstream of or within
is negative form of: causally upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-03-13T23:55:05Z

causally upstream of or within, positive effect
type: ObjectProperty
sub property of: causally upstream of or within
is positive form of: causally upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-03-13T23:55:19Z

regulates activity of
type: ObjectProperty
sub property of: causally influences
domain: material entity
range: material entity
definition: The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
IAO_0000117: https://orcid.org/0000-0003-4639-4431

indirectly causally upstream of
type: ObjectProperty
sub property of: causally upstream of
definition: p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.
created by: pg
creation date: 2022-09-26T06:07:17Z

indirectly regulates
type: ObjectProperty
sub property of: regulates
sub property of: indirectly causally upstream of
definition: p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.
created by: pg
creation date: 2022-09-26T06:08:01Z

regulates characteristic
type: ObjectProperty
domain: process
range: quality
property chain axiom: regulates
definition: A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

positively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

negatively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: negatively regulates
property chain axiom: positively regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

software development
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: has_specified_output
    some values from: Class
      union of: software
      union of: source code module
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    union of: software
    union of: source code module
definition: A planned process that has specified output a software product and that involves the creation of source code.
IAO_0000117: Mathias Brochhausen
IAO_0000117: William R. Hogan
definition source: http://en.wikipedia.org/wiki/Software_development
IAO_0000600: A planned process resulting in a software product involving the creation of source code.

dataset creating
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: has_specified_output
    some values from: data set
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: data set
IAO_0000111: creating a data set
definition: A planned process that has a data set as its specified output.
IAO_0000117: William R. Hogan
alternative term: data set creation
alternative term: dataset creation

entity
type: Class
BFO_0000179: entity
BFO_0000180: Entity
example of usage: Julius Caesar
example of usage: Verdi’s Requiem
example of usage: the Second World War
example of usage: your body mass index
IAO_0000116: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
IAO_0000116: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
IAO_0000600: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

Axiom
annotated source: entity
annotated property: IAO_0000116
annotated target: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000004
comment: per discussion with Barry Smith

Axiom
annotated source: entity
annotated property: IAO_0000600
annotated target: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/001-001

continuant
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: continuant
disjoint with: occurrent
disjoint with: Restriction
  on property: part of
  some values from: occurrent
BFO_0000179: continuant
BFO_0000180: Continuant
IAO_0000111: continuant
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
IAO_0000116: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
IAO_0000116: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
imported from: pato.owl
IAO_0000600: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
IAO_0000601: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
IAO_0000601: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
IAO_0000601: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0000602: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0000602: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]

Axiom
annotated source: continuant
annotated property: IAO_0000116
annotated target: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000007

Axiom
annotated source: continuant
annotated property: IAO_0000600
annotated target: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/011-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/011-002

occurrent
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: occurrent
disjoint with: Restriction
  on property: part of
  some values from: continuant
BFO_0000179: occurrent
BFO_0000180: Occurrent
definition: An entity that has temporal parts and that happens, unfolds or develops through time.
IAO_0000116: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
IAO_0000116: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
IAO_0000116: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
IAO_0000116: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
IAO_0000600: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
IAO_0000601: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
IAO_0000601: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
IAO_0000602: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0000602: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]

Axiom
annotated source: occurrent
annotated property: IAO_0000116
annotated target: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000006
comment: per discussion with Barry Smith

Axiom
annotated source: occurrent
annotated property: IAO_0000116
annotated target: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000012

Axiom
annotated source: occurrent
annotated property: IAO_0000600
annotated target: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/077-002

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/079-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/079-001

independent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: independent continuant
disjoint with: specifically dependent continuant
disjoint with: generically dependent continuant
BFO_0000179: ic
BFO_0000180: IndependentContinuant
example of usage: a chair
example of usage: a heart
example of usage: a leg
example of usage: a molecule
example of usage: a spatial region
example of usage: an atom
example of usage: an orchestra.
example of usage: an organism
example of usage: the bottom right portion of a human torso
example of usage: the interior of your mouth
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
definition: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
IAO_0000601: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
IAO_0000601: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
IAO_0000602: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0000602: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0000602: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]

Axiom
annotated source: independent continuant
annotated property: definition
annotated target: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

process
type: Class
subclass of: occurrent
BFO_0000179: process
BFO_0000180: Process
example of usage: a process of cell-division, \ a beating of the heart
example of usage: a process of meiosis
example of usage: a process of sleeping
example of usage: the course of a disease
example of usage: the flight of a bird
example of usage: the life of an organism
example of usage: your process of aging.
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
definition: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
IAO_0000116: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
IAO_0000602: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]

Axiom
annotated source: process
annotated property: definition
annotated target: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: IAO_0000602
annotated target: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

disposition
type: Class
subclass of: realizable entity
disjoint with: role
BFO_0000179: disposition
BFO_0000180: Disposition
example of usage: an atom of element X has the disposition to decay to an atom of element Y
example of usage: certain people have a predisposition to colon cancer
example of usage: children are innately disposed to categorize objects in certain ways.
example of usage: the cell wall is disposed to filter chemicals in endocytosis and exocytosis
IAO_0000116: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
IAO_0000600: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
IAO_0000601: If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
IAO_0000602: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
IAO_0000602: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]

Axiom
annotated source: disposition
annotated property: IAO_0000600
annotated target: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/062-002

Axiom
annotated source: disposition
annotated property: IAO_0000601
annotated target: If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/062-002

realizable entity
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: realizable entity
disjoint with: quality
BFO_0000179: realizable
BFO_0000180: RealizableEntity
example of usage: the disposition of this piece of metal to conduct electricity.
example of usage: the disposition of your blood to coagulate
example of usage: the function of your reproductive organs
example of usage: the role of being a doctor
example of usage: the role of this boundary to delineate where Utah and Colorado meet
definition: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
IAO_0000600: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
IAO_0000601: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
IAO_0000602: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0000602: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]

Axiom
annotated source: realizable entity
annotated property: IAO_0000600
annotated target: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/058-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000601
annotated target: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000602
annotated target: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/058-002

quality
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: quality
BFO_0000179: quality
BFO_0000180: Quality
IAO_0000111: quality
example of usage: the ambient temperature of this portion of air
example of usage: the color of a tomato
example of usage: the length of the circumference of your waist
example of usage: the mass of this piece of gold.
example of usage: the shape of your nose
example of usage: the shape of your nostril
imported from: pato.owl
IAO_0000600: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
IAO_0000601: If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
IAO_0000602: (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
IAO_0000602: (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]

Axiom
annotated source: quality
annotated property: IAO_0000600
annotated target: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: IAO_0000601
annotated target: If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/105-001

Axiom
annotated source: quality
annotated property: IAO_0000602
annotated target: (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: IAO_0000602
annotated target: (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/105-001

specifically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: part of
  all values from: specifically dependent continuant
disjoint with: generically dependent continuant
BFO_0000179: sdc
BFO_0000180: SpecificallyDependentContinuant
IAO_0000111: specifically dependent continuant
example of usage: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
example of usage: of one-sided specifically dependent continuants: the mass of this tomato
example of usage: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
example of usage: the disposition of this fish to decay
example of usage: the function of this heart: to pump blood
example of usage: the mutual dependence of proton donors and acceptors in chemical reactions [79
example of usage: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
example of usage: the pink color of a medium rare piece of grilled filet mignon at its center
example of usage: the role of being a doctor
example of usage: the shape of this hole.
example of usage: the smell of this portion of mozzarella
definition: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
definition: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
IAO_0000116: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
imported from: pato.owl
IAO_0000602: (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
IAO_0000602: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/050-003

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000116
annotated target: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000005
comment: per discussion with Barry Smith

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/050-003

role
type: Class
subclass of: realizable entity
BFO_0000179: role
BFO_0000180: Role
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: the priest role
example of usage: the role of a boundary to demarcate two neighboring administrative territories
example of usage: the role of a building in serving as a military target
example of usage: the role of a stone in marking a property boundary
example of usage: the role of subject in a clinical trial
example of usage: the student role
definition: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
IAO_0000116: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
IAO_0000600: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
IAO_0000602: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]

Axiom
annotated source: role
annotated property: IAO_0000600
annotated target: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/061-001

Axiom
annotated source: role
annotated property: IAO_0000602
annotated target: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/061-001

generically dependent continuant
type: Class
subclass of: continuant
BFO_0000179: gdc
BFO_0000180: GenericallyDependentContinuant
example of usage: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
example of usage: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
example of usage: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
definition: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
definition: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
IAO_0000602: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]

Axiom
annotated source: generically dependent continuant
annotated property: definition
annotated target: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/074-001

Axiom
annotated source: generically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/074-001

function
type: Class
subclass of: disposition
BFO_0000179: function
BFO_0000180: Function
example of usage: the function of a hammer to drive in nails
example of usage: the function of a heart pacemaker to regulate the beating of a heart through electricity
example of usage: the function of amylase in saliva to break down starch into sugar
IAO_0000116: BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
IAO_0000600: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
IAO_0000602: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]

Axiom
annotated source: function
annotated property: IAO_0000600
annotated target: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/064-001

Axiom
annotated source: function
annotated property: IAO_0000602
annotated target: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/064-001

material entity
type: Class
subclass of: independent continuant
disjoint with: immaterial entity
disjoint with: Restriction
  on property: part of
  some values from: immaterial entity
BFO_0000179: material
BFO_0000180: MaterialEntity
IAO_0000111: material entity
example of usage: a flame
example of usage: a forest fire
example of usage: a human being
example of usage: a hurricane
example of usage: a photon
example of usage: a puff of smoke
example of usage: a sea wave
example of usage: a tornado
example of usage: an aggregate of human beings.
example of usage: an energy wave
example of usage: an epidemic
example of usage: the undetached arm of a human being
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
IAO_0000116: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
IAO_0000116: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
IAO_0000116: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
imported from: cl.owl
imported from: ido.owl
imported from: uberon.owl
IAO_0000600: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
IAO_0000601: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
IAO_0000601: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
IAO_0000602: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]

Axiom
annotated source: material entity
annotated property: IAO_0000600
annotated target: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/020-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/020-002

immaterial entity
type: Class
subclass of: independent continuant
disjoint with: Restriction
  on property: has part
  some values from: material entity
BFO_0000179: immaterial
BFO_0000180: ImmaterialEntity
IAO_0000116: BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10

carbon black nanoparticle
type: Class
subclass of: nanoparticle
subclass of: carbon nanostructure
subclass of: carbon black
definition: Any form of carbon black which has a particle size of less than 100 nm in each dimension.
has db xref: PMCID:PMC3190904
has db xref: PMID:21525001
has db xref: PMID:22753103
has db xref: PMID:24078381
has db xref: PMID:24283474
has db xref: PMID:25056782
has db xref: PMID:25071917
has db xref: PMID:25184212
has db xref: PMID:25451823
has db xref: PMID:25833640
has db xref: PMID:25966413
has db xref: PMID:26066782
has db xref: PMID:26551751
has db xref: PMID:26914170
has db xref: PMID:27460290
has db xref: PMID:27534448
has_obo_namespace: chebi_ontology
has_related_synonym: carbon black nanoparticles
id: CHEBI:133602
in_subset: 3 STAR

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMCID:PMC3190904
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:21525001
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:22753103
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:24078381
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:24283474
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:25056782
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:25071917
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:25184212
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:25451823
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:25833640
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:25966413
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:26066782
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:26551751
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:26914170
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:27460290
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: hasDbXref
annotated target: PMID:27534448
source: Europe PMC

Axiom
annotated source: carbon black nanoparticle
annotated property: has_related_synonym
annotated target: carbon black nanoparticles
has db xref: ChEBI

cyanide
type: Class
subclass of: pseudohalide anion
definition: A pseudohalide anion that is the conjugate base of hydrogen cyanide.
charge: -1
formula: CN
inchi: InChI=1S/CN/c1-2/q-1
inchikey: XFXPMWWXUTWYJX-UHFFFAOYSA-N
mass: 26.01740
monoisotopicmass: 26.00362
smiles: [C-]#N
has_alternative_id: CHEBI:14038
has_alternative_id: CHEBI:3969
has_alternative_id: CHEBI:41780
has db xref: Beilstein:1900509
has db xref: CAS:57-12-5
has db xref: Gmelin:89
has db xref: HMDB:HMDB0002084
has db xref: KEGG:C00177
has db xref: MetaCyc:CPD-13584
has db xref: PDBeChem:CYN
has db xref: PMID:11386635
has db xref: PMID:14871577
has db xref: PMID:17554165
has db xref: PMID:7839575
has db xref: Reaxys:1900509
has db xref: Wikipedia:Cyanide
has_exact_synonym: Cyanide
has_exact_synonym: cyanide
has_exact_synonym: nitridocarbonate(1-)
has_obo_namespace: chebi_ontology
has_related_synonym: CN(-)
has_related_synonym: CN-
has_related_synonym: CYANIDE ION
has_related_synonym: Prussiate
has_related_synonym: Zyanid
id: CHEBI:17514
in_subset: 3 STAR

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: Beilstein:1900509
source: Beilstein

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: CAS:57-12-5
source: ChemIDplus

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: CAS:57-12-5
source: KEGG COMPOUND

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: CAS:57-12-5
source: NIST Chemistry WebBook

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: Gmelin:89
source: Gmelin

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: PMID:11386635
source: Europe PMC

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: PMID:14871577
source: Europe PMC

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: PMID:17554165
source: Europe PMC

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: PMID:7839575
source: Europe PMC

Axiom
annotated source: cyanide
annotated property: hasDbXref
annotated target: Reaxys:1900509
source: Reaxys

Axiom
annotated source: cyanide
annotated property: has_exact_synonym
annotated target: Cyanide
has db xref: ChEBI

Axiom
annotated source: cyanide
annotated property: has_exact_synonym
annotated target: Cyanide
has db xref: KEGG_COMPOUND

Axiom
annotated source: cyanide
annotated property: has_exact_synonym
annotated target: cyanide
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: cyanide
annotated property: has_exact_synonym
annotated target: nitridocarbonate(1-)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: cyanide
annotated property: has_related_synonym
annotated target: CN(-)
has db xref: IUPAC

Axiom
annotated source: cyanide
annotated property: has_related_synonym
annotated target: CN-
has db xref: KEGG_COMPOUND

Axiom
annotated source: cyanide
annotated property: has_related_synonym
annotated target: CYANIDE ION
has db xref: PDBeChem

Axiom
annotated source: cyanide
annotated property: has_related_synonym
annotated target: Prussiate
has db xref: KEGG_COMPOUND

Axiom
annotated source: cyanide
annotated property: has_related_synonym
annotated target: Zyanid
has db xref: ChEBI

anion
type: Class
subclass of: ion
definition: A monoatomic or polyatomic species having one or more elementary charges of the electron.
has_exact_synonym: Anion
has_exact_synonym: anion
has_obo_namespace: chebi_ontology
has_related_synonym: Anionen
has_related_synonym: aniones
has_related_synonym: anions
id: CHEBI:22563
in_subset: 3 STAR

Axiom
annotated source: anion
annotated property: has_exact_synonym
annotated target: Anion
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: has_exact_synonym
annotated target: anion
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: has_exact_synonym
annotated target: anion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: Anionen
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: aniones
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: anions
has db xref: IUPAC

molecular entity
type: Class
subclass of: chemical entity
definition: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
has_exact_synonym: molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: entidad molecular
has_related_synonym: entidades moleculares
has_related_synonym: entite moleculaire
has_related_synonym: molecular entities
has_related_synonym: molekulare Entitaet
id: CHEBI:23367
in_subset: 3 STAR

Axiom
annotated source: molecular entity
annotated property: has_exact_synonym
annotated target: molecular entity
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidad molecular
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidades moleculares
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entite moleculaire
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molecular entities
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molekulare Entitaet
has db xref: ChEBI

chemical entity
type: Class
definition: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
has_exact_synonym: chemical entity
has_obo_namespace: chebi_ontology
id: CHEBI:24431
in_subset: 3 STAR

Axiom
annotated source: chemical entity
annotated property: has_exact_synonym
annotated target: chemical entity
has db xref: UniProt

group
type: Class
subclass of: chemical entity
definition: A defined linked collection of atoms or a single atom within a molecular entity.
has_exact_synonym: group
has_obo_namespace: chebi_ontology
has_related_synonym: Gruppe
has_related_synonym: Rest
has_related_synonym: groupe
has_related_synonym: grupo
has_related_synonym: grupos
id: CHEBI:24433
in_subset: 3 STAR

Axiom
annotated source: group
annotated property: has_exact_synonym
annotated target: group
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: Gruppe
has db xref: ChEBI

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: Rest
has db xref: ChEBI

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: groupe
has db xref: IUPAC

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: grupo
has db xref: IUPAC

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: grupos
has db xref: IUPAC

organic heterocyclic compound
type: Class
subclass of: heteroorganic entity
subclass of: organic cyclic compound
subclass of: heterocyclic compound
definition: A cyclic compound having as ring members atoms of carbon and at least of one other element.
has_obo_namespace: chebi_ontology
has_related_synonym: organic heterocycle
has_related_synonym: organic heterocyclic compounds
id: CHEBI:24532
in_subset: 3 STAR

Axiom
annotated source: organic heterocyclic compound
annotated property: has_related_synonym
annotated target: organic heterocycle
has db xref: ChEBI

Axiom
annotated source: organic heterocyclic compound
annotated property: has_related_synonym
annotated target: organic heterocyclic compounds
has db xref: ChEBI

ion
type: Class
subclass of: molecular entity
definition: A molecular entity having a net electric charge.
has_exact_synonym: Ion
has_exact_synonym: ion
has_obo_namespace: chebi_ontology
has_related_synonym: Ionen
has_related_synonym: iones
has_related_synonym: ions
id: CHEBI:24870
in_subset: 3 STAR

Axiom
annotated source: ion
annotated property: has_exact_synonym
annotated target: Ion
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: has_exact_synonym
annotated target: ion
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: has_exact_synonym
annotated target: ion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: Ionen
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: iones
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: ions
has db xref: ChEBI

molecule
type: Class
subclass of: polyatomic entity
definition: Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
has_exact_synonym: molecule
has_obo_namespace: chebi_ontology
has_related_synonym: Molekuel
has_related_synonym: molecula
has_related_synonym: molecules
has_related_synonym: neutral molecular compounds
id: CHEBI:25367
in_subset: 3 STAR

Axiom
annotated source: molecule
annotated property: has_exact_synonym
annotated target: molecule
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: Molekuel
has db xref: ChEBI

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: molecula
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: molecules
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: neutral molecular compounds
has db xref: IUPAC

organic anion
type: Class
subclass of: anion
subclass of: organic ion
definition: Any organic ion with a net negative charge.
has_obo_namespace: chebi_ontology
has_related_synonym: organic anions
id: CHEBI:25696
in_subset: 3 STAR

Axiom
annotated source: organic anion
annotated property: has_related_synonym
annotated target: organic anions
has db xref: ChEBI

organic ion
type: Class
subclass of: ion
subclass of: organic molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: organic ions
id: CHEBI:25699
in_subset: 3 STAR

Axiom
annotated source: organic ion
annotated property: has_related_synonym
annotated target: organic ions
has db xref: ChEBI

sulfur molecular entity
type: Class
subclass of: chalcogen molecular entity
has_exact_synonym: sulfur molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: sulfur molecular entities
id: CHEBI:26835
in_subset: 3 STAR

Axiom
annotated source: sulfur molecular entity
annotated property: has_exact_synonym
annotated target: sulfur molecular entity
has db xref: ChEBI

Axiom
annotated source: sulfur molecular entity
annotated property: has_related_synonym
annotated target: sulfur molecular entities
has db xref: ChEBI

rubber particle
type: Class
subclass of: polymer
definition: A polymer consisting of cis-linked prenyl units.
charge: 0
formula: (C5H8)n.H2
has_alternative_id: CHEBI:26584
has_alternative_id: CHEBI:8905
has db xref: KEGG:C02321
has_exact_synonym: Rubber particle
has_obo_namespace: chebi_ontology
has_related_synonym: Rubber
has_related_synonym: Rubber (all-cis)
id: CHEBI:28798
in_subset: 3 STAR

Axiom
annotated source: rubber particle
annotated property: has_exact_synonym
annotated target: Rubber particle
has db xref: KEGG_COMPOUND

Axiom
annotated source: rubber particle
annotated property: has_related_synonym
annotated target: Rubber
has db xref: KEGG_COMPOUND

Axiom
annotated source: rubber particle
annotated property: has_related_synonym
annotated target: Rubber (all-cis)
has db xref: KEGG_COMPOUND

organic group
type: Class
subclass of: group
definition: Any substituent group or skeleton containing carbon.
has_obo_namespace: chebi_ontology
has_related_synonym: organic groups
id: CHEBI:33247
in_subset: 3 STAR

Axiom
annotated source: organic group
annotated property: has_related_synonym
annotated target: organic groups
has db xref: ChEBI

elemental molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity all atoms of which have the same atomic number.
has_obo_namespace: chebi_ontology
has_related_synonym: homoatomic entity
has_related_synonym: homoatomic molecular entities
has_related_synonym: homoatomic molecular entity
id: CHEBI:33259
in_subset: 3 STAR

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic entity
has db xref: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic molecular entities
has db xref: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic molecular entity
has db xref: ChEBI

organosulfur compound
type: Class
subclass of: sulfur molecular entity
subclass of: organochalcogen compound
definition: An organosulfur compound is a compound containing at least one carbon-sulfur bond.
has_alternative_id: CHEBI:23010
has_alternative_id: CHEBI:25714
has db xref: Wikipedia:Organosulfur_compounds
has_exact_synonym: organosulfur compound
has_obo_namespace: chebi_ontology
has_related_synonym: organosulfur compounds
id: CHEBI:33261
in_subset: 3 STAR

Axiom
annotated source: organosulfur compound
annotated property: has_exact_synonym
annotated target: organosulfur compound
has db xref: ChEBI

Axiom
annotated source: organosulfur compound
annotated property: has_related_synonym
annotated target: organosulfur compounds
has db xref: ChEBI

polyatomic anion
type: Class
subclass of: anion
subclass of: polyatomic ion
definition: An anion consisting of more than one atom.
has_obo_namespace: chebi_ontology
has_related_synonym: polyatomic anions
id: CHEBI:33273
in_subset: 3 STAR

Axiom
annotated source: polyatomic anion
annotated property: has_related_synonym
annotated target: polyatomic anions
has db xref: ChEBI

heteroorganic entity
type: Class
subclass of: organic molecular entity
definition: A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
has_obo_namespace: chebi_ontology
has_related_synonym: heteroorganic entities
has_related_synonym: organoelement compounds
id: CHEBI:33285
in_subset: 3 STAR

Axiom
annotated source: heteroorganic entity
annotated property: has_related_synonym
annotated target: heteroorganic entities
has db xref: ChEBI

Axiom
annotated source: heteroorganic entity
annotated property: has_related_synonym
annotated target: organoelement compounds
has db xref: ChEBI

pnictogen molecular entity
type: Class
subclass of: p-block molecular entity
definition: A p-block molecular entity containing any pnictogen.
has_exact_synonym: pnictogen molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: pnictogen molecular entities
id: CHEBI:33302
in_subset: 3 STAR

Axiom
annotated source: pnictogen molecular entity
annotated property: has_exact_synonym
annotated target: pnictogen molecular entity
has db xref: ChEBI

Axiom
annotated source: pnictogen molecular entity
annotated property: has_related_synonym
annotated target: pnictogen molecular entities
has db xref: ChEBI

chalcogen molecular entity
type: Class
subclass of: p-block molecular entity
definition: Any p-block molecular entity containing a chalcogen.
has_exact_synonym: chalcogen molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: chalcogen compounds
has_related_synonym: chalcogen molecular entities
id: CHEBI:33304
in_subset: 3 STAR

Axiom
annotated source: chalcogen molecular entity
annotated property: has_exact_synonym
annotated target: chalcogen molecular entity
has db xref: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: has_related_synonym
annotated target: chalcogen compounds
has db xref: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: has_related_synonym
annotated target: chalcogen molecular entities
has db xref: ChEBI

elemental carbon
type: Class
subclass of: elemental molecular entity
subclass of: organic molecular entity
has db xref: CAS:7440-44-0
has db xref: CAS:82600-58-6
has db xref: Gmelin:8868
has_obo_namespace: chebi_ontology
has_related_synonym: carbon
id: CHEBI:33415
in_subset: 3 STAR

Axiom
annotated source: elemental carbon
annotated property: hasDbXref
annotated target: CAS:7440-44-0
source: ChemIDplus

Axiom
annotated source: elemental carbon
annotated property: hasDbXref
annotated target: CAS:7440-44-0
source: NIST Chemistry WebBook

Axiom
annotated source: elemental carbon
annotated property: hasDbXref
annotated target: CAS:82600-58-6
source: NIST Chemistry WebBook

Axiom
annotated source: elemental carbon
annotated property: hasDbXref
annotated target: Gmelin:8868
source: Gmelin

Axiom
annotated source: elemental carbon
annotated property: has_related_synonym
annotated target: carbon
has db xref: ChemIDplus

hydrocarbylene group
type: Class
subclass of: organodiyl group
definition: A bivalent group formed by removing two hydrogen atoms from a hydrocarbon, the free valencies of which are not engaged in a double bond.
has_exact_synonym: hydrocarbylene group
has_exact_synonym: hydrocarbylene groups
has_obo_namespace: chebi_ontology
has_related_synonym: groupe hydrocarbylene
has_related_synonym: grupo hidrocarbileno
has_related_synonym: grupos hidrocarbileno
id: CHEBI:33471
in_subset: 3 STAR

Axiom
annotated source: hydrocarbylene group
annotated property: has_exact_synonym
annotated target: hydrocarbylene group
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrocarbylene group
annotated property: has_exact_synonym
annotated target: hydrocarbylene groups
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrocarbylene group
annotated property: has_related_synonym
annotated target: groupe hydrocarbylene
has db xref: IUPAC

Axiom
annotated source: hydrocarbylene group
annotated property: has_related_synonym
annotated target: grupo hidrocarbileno
has db xref: IUPAC

Axiom
annotated source: hydrocarbylene group
annotated property: has_related_synonym
annotated target: grupos hidrocarbileno
has db xref: IUPAC

main group molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
has_obo_namespace: chebi_ontology
has_related_synonym: main group compounds
has_related_synonym: main group molecular entities
id: CHEBI:33579
in_subset: 3 STAR

Axiom
annotated source: main group molecular entity
annotated property: has_related_synonym
annotated target: main group compounds
has db xref: ChEBI

Axiom
annotated source: main group molecular entity
annotated property: has_related_synonym
annotated target: main group molecular entities
has db xref: ChEBI

carbon group molecular entity
type: Class
subclass of: p-block molecular entity
has_exact_synonym: carbon group molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: carbon group molecular entities
id: CHEBI:33582
in_subset: 3 STAR

Axiom
annotated source: carbon group molecular entity
annotated property: has_exact_synonym
annotated target: carbon group molecular entity
has db xref: ChEBI

Axiom
annotated source: carbon group molecular entity
annotated property: has_related_synonym
annotated target: carbon group molecular entities
has db xref: ChEBI

cyclic compound
type: Class
subclass of: molecule
definition: Any molecule that consists of a series of atoms joined together to form a ring.
has db xref: Wikipedia:Cyclic_compound
has_obo_namespace: chebi_ontology
has_related_synonym: cyclic compounds
id: CHEBI:33595
in_subset: 3 STAR

Axiom
annotated source: cyclic compound
annotated property: has_related_synonym
annotated target: cyclic compounds
has db xref: ChEBI

aromatic compound
type: Class
subclass of: cyclic compound
definition: A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.
has_exact_synonym: aromatic compounds
has_exact_synonym: aromatic molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: aromatics
has_related_synonym: aromatische Verbindungen
id: CHEBI:33655
in_subset: 3 STAR

Axiom
annotated source: aromatic compound
annotated property: has_exact_synonym
annotated target: aromatic compounds
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: aromatic compound
annotated property: has_exact_synonym
annotated target: aromatic molecular entity
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: aromatic compound
annotated property: has_related_synonym
annotated target: aromatics
has db xref: ChEBI

Axiom
annotated source: aromatic compound
annotated property: has_related_synonym
annotated target: aromatische Verbindungen
has db xref: ChEBI

organic aromatic compound
type: Class
subclass of: aromatic compound
subclass of: organic cyclic compound
has_obo_namespace: chebi_ontology
has_related_synonym: organic aromatic compounds
id: CHEBI:33659
in_subset: 3 STAR

Axiom
annotated source: organic aromatic compound
annotated property: has_related_synonym
annotated target: organic aromatic compounds
has db xref: ChEBI

p-block molecular entity
type: Class
subclass of: main group molecular entity
definition: A main group molecular entity that contains one or more atoms of a p-block element.
has_obo_namespace: chebi_ontology
has_related_synonym: p-block compounds
has_related_synonym: p-block molecular entities
has_related_synonym: p-block molecular entitiy
id: CHEBI:33675
in_subset: 3 STAR

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block compounds
has db xref: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block molecular entities
has db xref: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block molecular entitiy
has db xref: ChEBI

organic cyclic compound
type: Class
subclass of: cyclic compound
subclass of: organic molecule
definition: Any organic molecule that consists of atoms connected in the form of a ring.
has_obo_namespace: chebi_ontology
has_related_synonym: organic cyclic compounds
id: CHEBI:33832
in_subset: 3 STAR

Axiom
annotated source: organic cyclic compound
annotated property: has_related_synonym
annotated target: organic cyclic compounds
has db xref: ChEBI

heteroarene
type: Class
subclass of: organic heterocyclic compound
subclass of: organic aromatic compound
definition: A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).
has_exact_synonym: heteroarenes
has_obo_namespace: chebi_ontology
has_related_synonym: hetarenes
id: CHEBI:33833
in_subset: 3 STAR

Axiom
annotated source: heteroarene
annotated property: has_exact_synonym
annotated target: heteroarenes
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: heteroarene
annotated property: has_related_synonym
annotated target: hetarenes
has db xref: IUPAC

organonitrogen compound
type: Class
subclass of: heteroorganic entity
subclass of: nitrogen molecular entity
definition: Any heteroorganic entity containing at least one carbon-nitrogen bond.
has_exact_synonym: organonitrogen compounds
has_obo_namespace: chebi_ontology
has_related_synonym: organonitrogens
id: CHEBI:35352
in_subset: 3 STAR

Axiom
annotated source: organonitrogen compound
annotated property: has_exact_synonym
annotated target: organonitrogen compounds
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organonitrogen compound
annotated property: has_related_synonym
annotated target: organonitrogens
has db xref: ChEBI

organic disulfide
type: Class
subclass of: organosulfur compound
subclass of: disulfide
definition: Compounds of structure RSSR in which R and R' are organic groups.
charge: 0
formula: S2R2
mass: 64.13000
monoisotopicmass: 63.94414
smiles: [*]SS[*]
has_exact_synonym: disulfides
has_obo_namespace: chebi_ontology
has_related_synonym: an organic disulfide
has_related_synonym: organic disulfides
id: CHEBI:35489
in_subset: 3 STAR

Axiom
annotated source: organic disulfide
annotated property: has_exact_synonym
annotated target: disulfides
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organic disulfide
annotated property: has_related_synonym
annotated target: an organic disulfide
has db xref: UniProt

Axiom
annotated source: organic disulfide
annotated property: has_related_synonym
annotated target: organic disulfides
has db xref: ChEBI

polyatomic entity
type: Class
subclass of: molecular entity
definition: Any molecular entity consisting of more than one atom.
has_obo_namespace: chebi_ontology
has_related_synonym: polyatomic entities
id: CHEBI:36357
in_subset: 3 STAR

Axiom
annotated source: polyatomic entity
annotated property: has_related_synonym
annotated target: polyatomic entities
has db xref: ChEBI

polyatomic ion
type: Class
subclass of: ion
subclass of: polyatomic entity
definition: An ion consisting of more than one atom.
has_obo_namespace: chebi_ontology
has_related_synonym: polyatomic ions
id: CHEBI:36358
in_subset: 3 STAR

Axiom
annotated source: polyatomic ion
annotated property: has_related_synonym
annotated target: polyatomic ions
has db xref: ChEBI

pseudohalide anion
type: Class
subclass of: polyatomic monoanion
has_exact_synonym: pseudohalide ions
has_obo_namespace: chebi_ontology
has_related_synonym: pseudohalide anions
has_related_synonym: pseudohalides
has_related_synonym: pseudohalogen anion
has_related_synonym: pseudohalogen ion
id: CHEBI:36828
in_subset: 3 STAR

Axiom
annotated source: pseudohalide anion
annotated property: has_exact_synonym
annotated target: pseudohalide ions
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: pseudohalide anion
annotated property: has_related_synonym
annotated target: pseudohalide anions
has db xref: ChEBI

Axiom
annotated source: pseudohalide anion
annotated property: has_related_synonym
annotated target: pseudohalides
has db xref: ChEBI

Axiom
annotated source: pseudohalide anion
annotated property: has_related_synonym
annotated target: pseudohalogen anion
has db xref: ChEBI

Axiom
annotated source: pseudohalide anion
annotated property: has_related_synonym
annotated target: pseudohalogen ion
has db xref: ChEBI

polyatomic monoanion
type: Class
subclass of: polyatomic anion
subclass of: monoanion
has_obo_namespace: chebi_ontology
has_related_synonym: polyatomic monoanions
id: CHEBI:36829
in_subset: 3 STAR

Axiom
annotated source: polyatomic monoanion
annotated property: has_related_synonym
annotated target: polyatomic monoanions
has db xref: ChEBI

monoanion
type: Class
subclass of: anion
charge: -1
has_obo_namespace: chebi_ontology
has_related_synonym: monoanions
id: CHEBI:36830
in_subset: 3 STAR

Axiom
annotated source: monoanion
annotated property: has_related_synonym
annotated target: monoanions
has db xref: ChEBI

organochalcogen compound
type: Class
subclass of: heteroorganic entity
subclass of: chalcogen molecular entity
definition: An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
has_exact_synonym: organochalcogen compound
has_obo_namespace: chebi_ontology
has_related_synonym: organochalcogen compounds
id: CHEBI:36962
in_subset: 3 STAR

Axiom
annotated source: organochalcogen compound
annotated property: has_exact_synonym
annotated target: organochalcogen compound
has db xref: ChEBI

Axiom
annotated source: organochalcogen compound
annotated property: has_related_synonym
annotated target: organochalcogen compounds
has db xref: ChEBI

organonitrogen heterocyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: organonitrogen compound
definition: Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.
has_obo_namespace: chebi_ontology
has_related_synonym: heterocyclic organonitrogen compounds
has_related_synonym: organonitrogen heterocyclic compounds
id: CHEBI:38101
in_subset: 3 STAR

Axiom
annotated source: organonitrogen heterocyclic compound
annotated property: has_related_synonym
annotated target: heterocyclic organonitrogen compounds
has db xref: ChEBI

Axiom
annotated source: organonitrogen heterocyclic compound
annotated property: has_related_synonym
annotated target: organonitrogen heterocyclic compounds
has db xref: ChEBI

organosulfur heterocyclic compound
type: Class
subclass of: organic heterocyclic compound
subclass of: organosulfur compound
has_obo_namespace: chebi_ontology
has_related_synonym: heterocyclic organosulfur compounds
has_related_synonym: organosulfur heterocyclic compounds
id: CHEBI:38106
in_subset: 3 STAR

Axiom
annotated source: organosulfur heterocyclic compound
annotated property: has_related_synonym
annotated target: heterocyclic organosulfur compounds
has db xref: ChEBI

Axiom
annotated source: organosulfur heterocyclic compound
annotated property: has_related_synonym
annotated target: organosulfur heterocyclic compounds
has db xref: ChEBI

monocyclic heteroarene
type: Class
subclass of: heteroarene
has_obo_namespace: chebi_ontology
has_related_synonym: monocyclic heteroarenes
id: CHEBI:38179
in_subset: 3 STAR

Axiom
annotated source: monocyclic heteroarene
annotated property: has_related_synonym
annotated target: monocyclic heteroarenes
has db xref: ChEBI

1,3-thiazoles
type: Class
subclass of: thiazoles
has_alternative_id: CHEBI:26949
has_alternative_id: CHEBI:38417
has_exact_synonym: 1,3-thiazoles
has_obo_namespace: chebi_ontology
id: CHEBI:38418
in_subset: 3 STAR

Axiom
annotated source: 1,3-thiazoles
annotated property: has_exact_synonym
annotated target: 1,3-thiazoles
has db xref: ChEBI

disulfide
type: Class
subclass of: sulfur molecular entity
definition: Compounds of structure RSSR'.
has_obo_namespace: chebi_ontology
has_related_synonym: disulfides
id: CHEBI:48343
in_subset: 3 STAR

Axiom
annotated source: disulfide
annotated property: has_related_synonym
annotated target: disulfides
has db xref: ChEBI

thiazoles
type: Class
subclass of: organosulfur heterocyclic compound
subclass of: azole
definition: An azole in which the five-membered heterocyclic aromatic skeleton contains a N atom and one S atom.
has_obo_namespace: chebi_ontology
has_related_synonym: thiazole
id: CHEBI:48901
in_subset: 3 STAR

Axiom
annotated source: thiazoles
annotated property: has_related_synonym
annotated target: thiazole
has db xref: ChEBI

nanostructure
type: Class
subclass of: polyatomic entity
definition: A nanometre sized object.
has_obo_namespace: chebi_ontology
has_related_synonym: nanoestructura
id: CHEBI:50795
in_subset: 3 STAR

Axiom
annotated source: nanostructure
annotated property: has_related_synonym
annotated target: nanoestructura
has db xref: ChEBI

nanoparticle
type: Class
subclass of: nanostructure
definition: A nanosized spherical or capsule-shaped structure.
has_obo_namespace: chebi_ontology
has_related_synonym: NP
has_related_synonym: Nanoteilchen
has_related_synonym: nanoparticles
has_related_synonym: nanoparticula
has_related_synonym: nanoparticule
id: CHEBI:50803
in_subset: 3 STAR

Axiom
annotated source: nanoparticle
annotated property: has_related_synonym
annotated target: NP
has db xref: ChEBI

Axiom
annotated source: nanoparticle
annotated property: has_related_synonym
annotated target: Nanoteilchen
has db xref: ChEBI

Axiom
annotated source: nanoparticle
annotated property: has_related_synonym
annotated target: nanoparticles
has db xref: ChEBI

Axiom
annotated source: nanoparticle
annotated property: has_related_synonym
annotated target: nanoparticula
has db xref: ChEBI

Axiom
annotated source: nanoparticle
annotated property: has_related_synonym
annotated target: nanoparticule
has db xref: ChEBI

carbon nanostructure
type: Class
subclass of: elemental carbon
subclass of: nanostructure
has_obo_namespace: chebi_ontology
has_related_synonym: carbon nanostructures
id: CHEBI:50812
in_subset: 3 STAR

Axiom
annotated source: carbon nanostructure
annotated property: has_related_synonym
annotated target: carbon nanostructures
has db xref: ChEBI

organic molecular entity
type: Class
subclass of: carbon group molecular entity
definition: Any molecular entity that contains carbon.
has_alternative_id: CHEBI:25700
has_alternative_id: CHEBI:33244
has_obo_namespace: chebi_ontology
has_related_synonym: organic compounds
has_related_synonym: organic entity
has_related_synonym: organic molecular entities
id: CHEBI:50860
in_subset: 3 STAR

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic compounds
has db xref: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic entity
has db xref: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic molecular entities
has db xref: ChEBI

nitrogen molecular entity
type: Class
subclass of: pnictogen molecular entity
has_alternative_id: CHEBI:25556
has_alternative_id: CHEBI:7594
has db xref: KEGG:C06061
has_obo_namespace: chebi_ontology
has_related_synonym: Nitrogenous compounds
has_related_synonym: nitrogen compounds
has_related_synonym: nitrogen molecular entities
id: CHEBI:51143
in_subset: 3 STAR

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: Nitrogenous compounds
has db xref: KEGG_COMPOUND

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: nitrogen compounds
has db xref: ChEBI

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: nitrogen molecular entities
has db xref: ChEBI

organodiyl group
type: Class
subclass of: organic divalent group
definition: Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s).
has_obo_namespace: chebi_ontology
has_related_synonym: organodiyl groups
id: CHEBI:51422
in_subset: 3 STAR

Axiom
annotated source: organodiyl group
annotated property: has_related_synonym
annotated target: organodiyl groups
has db xref: ChEBI

organic divalent group
type: Class
subclass of: organic group
has_obo_namespace: chebi_ontology
id: CHEBI:51446
in_subset: 1 STAR

heterocyclic compound
type: Class
subclass of: cyclic compound
definition: A cyclic compound having as ring members atoms of at least two different elements.
has_exact_synonym: Heterocyclic compound
has_obo_namespace: chebi_ontology
has_related_synonym: compuesto heterociclico
has_related_synonym: compuestos heterociclicos
has_related_synonym: heterocycle
has_related_synonym: heterocyclic compounds
id: CHEBI:5686
in_subset: 3 STAR

Axiom
annotated source: heterocyclic compound
annotated property: has_exact_synonym
annotated target: Heterocyclic compound
has db xref: KEGG_COMPOUND

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: compuesto heterociclico
has db xref: IUPAC

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: compuestos heterociclicos
has db xref: IUPAC

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: heterocycle
has db xref: ChEBI

Axiom
annotated source: heterocyclic compound
annotated property: has_related_synonym
annotated target: heterocyclic compounds
has db xref: ChEBI

chemical substance
type: Class
subclass of: chemical entity
definition: A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
has_obo_namespace: chebi_ontology
has_related_synonym: Chemische Substanz
id: CHEBI:59999
in_subset: 3 STAR

Axiom
annotated source: chemical substance
annotated property: has_related_synonym
annotated target: Chemische Substanz
has db xref: ChEBI

mixture
type: Class
subclass of: chemical substance
definition: A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind.
has_obo_namespace: chebi_ontology
has_related_synonym: Mischung
id: CHEBI:60004
in_subset: 3 STAR

Axiom
annotated source: mixture
annotated property: has_related_synonym
annotated target: Mischung
has db xref: ChEBI

polymer
type: Class
subclass of: mixture
definition: A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc..
has db xref: Wikipedia:Polymer
has_exact_synonym: Polymer
has_obo_namespace: chebi_ontology
has_related_synonym: Kunststoff
id: CHEBI:60027
in_subset: 3 STAR

Axiom
annotated source: polymer
annotated property: has_exact_synonym
annotated target: Polymer
has db xref: ChEBI

Axiom
annotated source: polymer
annotated property: has_related_synonym
annotated target: Kunststoff
has db xref: ChEBI

azole
type: Class
subclass of: organonitrogen heterocyclic compound
subclass of: monocyclic heteroarene
definition: Any monocyclic heteroarene consisting of a five-membered ring containing nitrogen. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen.
has db xref: Wikipedia:Azole
has_obo_namespace: chebi_ontology
has_related_synonym: azoles
id: CHEBI:68452
in_subset: 3 STAR

Axiom
annotated source: azole
annotated property: has_related_synonym
annotated target: azoles
has db xref: ChEBI

organic molecule
type: Class
subclass of: molecule
subclass of: organic molecular entity
definition: Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
has_obo_namespace: chebi_ontology
has_related_synonym: organic compound
has_related_synonym: organic compounds
has_related_synonym: organic molecules
id: CHEBI:72695
in_subset: 3 STAR

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic compound
has db xref: ChEBI

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic compounds
has db xref: ChEBI

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic molecules
has db xref: ChEBI

carbon black
type: Class
subclass of: elemental carbon
definition: An elemental carbon in the form of virtually pure colloidal particles that are produced by incomplete combustion or thermal decomposition of gaseous or liquid hydrocarbons under controlled conditions. A black, finely divided pellet or powder, its properties of specific surface area, particle size and structure, conductivity and colour can be varied by varying the exact conditions for its production. It is used in tyres, rubber and plastic products, printing inks and coatings.
has db xref: CAS:1333-86-4
has db xref: KEGG:C19202
has db xref: PMID:24291665
has db xref: PMID:24669321
has db xref: PMID:25071917
has db xref: PMID:26803751
has db xref: Wikipedia:Carbon_black
has_obo_namespace: chebi_ontology
id: CHEBI:82297
in_subset: 3 STAR

Axiom
annotated source: carbon black
annotated property: hasDbXref
annotated target: CAS:1333-86-4
source: ChemIDplus

Axiom
annotated source: carbon black
annotated property: hasDbXref
annotated target: CAS:1333-86-4
source: KEGG COMPOUND

Axiom
annotated source: carbon black
annotated property: hasDbXref
annotated target: PMID:24291665
source: Europe PMC

Axiom
annotated source: carbon black
annotated property: hasDbXref
annotated target: PMID:24669321
source: Europe PMC

Axiom
annotated source: carbon black
annotated property: hasDbXref
annotated target: PMID:25071917
source: Europe PMC

Axiom
annotated source: carbon black
annotated property: hasDbXref
annotated target: PMID:26803751
source: Europe PMC

Poligeenan
type: Class
subclass of: polymer
charge: 0
formula: C12H16O15S2
has db xref: CAS:53973-98-1
has db xref: KEGG:C19203
has db xref: KEGG:D05539
has_obo_namespace: chebi_ontology
has_related_synonym: Carrageenan, degraded
id: CHEBI:82298
in_subset: 2 STAR

Axiom
annotated source: Poligeenan
annotated property: hasDbXref
annotated target: CAS:53973-98-1
source: KEGG COMPOUND

Axiom
annotated source: Poligeenan
annotated property: has_related_synonym
annotated target: Carrageenan, degraded
has db xref: KEGG_COMPOUND

organic sulfur anion
type: Class
subclass of: organic anion
subclass of: sulfur molecular entity
definition: An organic anion in which the charge resides on a sulfur atom.
has_obo_namespace: chebi_ontology
has_related_synonym: organic sulfur anions
id: CHEBI:84291
in_subset: 3 STAR

Axiom
annotated source: organic sulfur anion
annotated property: has_related_synonym
annotated target: organic sulfur anions
has db xref: ChEBI

dithiocarbamate anions
type: Class
subclass of: organic sulfur anion
definition: Any organic sulfur anion resulting from the removal of a proton from any N-substituted dithiocarbamic acid.
charge: -1
formula: CNS2R2
mass: 90.14800
monoisotopicmass: 89.94722
smiles: [S-]C(=S)N([*])[*]
has_obo_namespace: chebi_ontology
id: CHEBI:84292
in_subset: 3 STAR

root node
type: Class

molecular_function
type: Class
definition: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
has_exact_synonym: molecular function
id: GO:0003674
comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.

Axiom
annotated source: molecular_function
annotated property: definition
annotated target: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.
has db xref: GOC:pdt

biological_process
type: Class
definition: A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
created by: jl
creation date: 2012-09-19T15:05:24Z
has db xref: Wikipedia:Biological_process
has_exact_synonym: biological process
has_exact_synonym: physiological process
has_related_synonym: single organism process
has_related_synonym: single-organism process
id: GO:0008150
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.

Axiom
annotated source: biological_process
annotated property: definition
annotated target: A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
has db xref: GOC:pdt

kinase activity
type: Class
subclass of: molecular_function
definition: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
has db xref: Reactome:R-HSA-6788855
has db xref: Reactome:R-HSA-6788867
has_exact_synonym: phosphokinase activity
id: GO:0016301
comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.

Axiom
annotated source: kinase activity
annotated property: definition
annotated target: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
has db xref: ISBN:0198506732

FN3KRP phosphorylates PsiAm, RibAm
type: Axiom
annotated source: kinase activity
annotated property: hasDbXref
annotated target: Reactome:R-HSA-6788855

FN3K phosphorylates ketosamines
type: Axiom
annotated source: kinase activity
annotated property: hasDbXref
annotated target: Reactome:R-HSA-6788867

measurement unit label
type: Class
subclass of: datum label
IAO_0000111: measurement unit label
example of usage: Examples of measurement unit labels are liters, inches, weight per volume.
has curation status: pending final vetting
definition: A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
IAO_0000116: 2009-03-16: provenance: a term measurement unit was proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and Cristian Cocos, and subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definition of this, different, term.
IAO_0000116: 2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Melanie Courtot

objective specification
type: Class
subclass of: directive information entity
IAO_0000111: objective specification
example of usage: In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.
has curation status: ready for release
definition: A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
IAO_0000116: 2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."
IAO_0000116: 2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.
IAO_0000116: Answers the question, why did you do this experiment?
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Barry Smith
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Jennifer Fostel
alternative term: goal specification
definition source: OBI Plan and Planned Process/Roles Branch
definition source: OBI_0000217

action specification
type: Class
subclass of: directive information entity
example of usage: Pour the contents of flask 1 into flask 2
has curation status: ready for release
definition: A directive information entity that describes an action the bearer will take.
IAO_0000117: Alan Ruttenberg
definition source: OBI Plan and Planned Process branch

datum label
type: Class
subclass of: information content entity
IAO_0000111: datum label
has curation status: metadata incomplete
definition: A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label
IAO_0000116: http://www.golovchenko.org/cgi-bin/wnsearch#4n
IAO_0000117: GROUP: IAO
IAO_0000232: 9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum.

software
type: Class
subclass of: plan specification
IAO_0000111: software
has curation status: metadata complete
definition: Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.
IAO_0000116: see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Chris Stoeckert
IAO_0000117: PERSON: Melanie Courtot
definition source: GROUP: OBI

information carrier
type: Class
equivalent class: Class
  intersection of: quality
  intersection of: Restriction
    on property: concretizes
    some values from: information content entity
subclass of: quality
subclass of: Restriction
  on property: concretizes
  some values from: information content entity
IAO_0000111: information carrier
example of usage: In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case.
has curation status: pending final vetting
definition: A quality of an information bearer that imparts the information content
IAO_0000116: 12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.
IAO_0000116: 2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.
IAO_0000117: PERSON: Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

data item
type: Class
subclass of: information content entity
IAO_0000111: data item
example of usage: Data items include counts of things, analyte concentrations, and statistical summaries.
has curation status: pending final vetting
definition: An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
IAO_0000116: 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
IAO_0000116: 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
IAO_0000116: 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
IAO_0000116: 2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
IAO_0000116: JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Chris Stoeckert
IAO_0000117: PERSON: Jonathan Rees
alternative term: data

information content entity
type: Class
subclass of: generically dependent continuant
subclass of: Restriction
  on property: is about
  some values from: entity
IAO_0000111: information content entity
example of usage: Examples of information content entites include journal articles, data, graphical layouts, and graphs.
has curation status: ready for release
definition: A generically dependent continuant that is about some thing.
IAO_0000116: 2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
IAO_0000116: information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
IAO_0000117: PERSON: Chris Stoeckert
definition source: OBI_0000142

directive information entity
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: realizable entity
has curation status: ready for release
definition: An information content entity whose concretizations indicate to their bearer how to realize them in a process.
IAO_0000116: 2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was "is the specification of a process that can be concretized and realized by an actor" with alternative term "instruction".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
IAO_0000116: 2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.
IAO_0000116: 8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO
IAO_0000116: Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters

dot plot
type: Class
subclass of: graph
IAO_0000111: dot plot
example of usage: Dot plot of SSC-H and FSC-H.
has curation status: example to be eventually removed
definition: A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.
IAO_0000117: person:Allyson Lister
IAO_0000117: person:Chris Stoeckert
definition source: OBI_0000123
definition source: group:OBI

graph
type: Class
subclass of: diagram
IAO_0000111: graph
has curation status: pending final vetting
definition: A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.
IAO_0000117: PERSON: Lawrence Hunter
IAO_0000117: person:Alan Ruttenberg
IAO_0000117: person:Allyson Lister
definition source: OBI_0000240
definition source: group:OBI

algorithm
type: Class
subclass of: plan specification
IAO_0000111: algorithm
example of usage: PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies.
has curation status: metadata complete
definition: A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.
IAO_0000117: Philippe Rocca-Serra
IAO_0000117: PlanAndPlannedProcess Branch
definition source: OBI_0000270
definition source: adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)

curation status specification
type: Class
equivalent class: Class
  one of: example to be eventually removed
  one of: metadata complete
  one of: organizational term
  one of: ready for release
  one of: metadata incomplete
  one of: uncurated
  one of: pending final vetting
  one of: to be replaced with external ontology term
  one of: requires discussion
subclass of: data about an ontology part
IAO_0000111: curation status specification
has curation status: pending final vetting
definition: The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
IAO_0000116: Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
IAO_0000117: PERSON:Bill Bug
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source: OBI_0000266

source code module
type: Class
subclass of: directive information entity
IAO_0000111: source code module
example of usage: The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script.
has curation status: metadata incomplete
definition: A source code module is a directive information entity that specifies, using a programming language, some algorithm.
IAO_0000117: person:Alan Ruttenberg
IAO_0000117: person:Chris Stoeckert
definition source: OBI_0000039
definition source: group:OBI

data format specification
type: Class
subclass of: directive information entity
IAO_0000111: data format specification
has curation status: metadata incomplete
definition: A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file
IAO_0000116: 2009-03-16: provenance: term imported from OBI_0000187, which had original definition "A data format specification is a plan which organizes information. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file"
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PlanAndPlannedProcess Branch
definition source: OBI branch derived
definition source: OBI_0000187

data set
type: Class
subclass of: data item
IAO_0000111: data set
example of usage: Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).
has curation status: pending final vetting
definition: A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
IAO_0000116: 2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type
IAO_0000116: 2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.
IAO_0000117: person:Allyson Lister
IAO_0000117: person:Chris Stoeckert
definition source: OBI_0000042
definition source: group:OBI

image
type: Class
subclass of: figure
IAO_0000111: image
has curation status: ready for release
definition: An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.
IAO_0000117: person:Alan Ruttenberg
IAO_0000117: person:Allyson
IAO_0000117: person:Chris Stoeckert
definition source: OBI_0000030
definition source: group:OBI

data about an ontology part
type: Class
subclass of: data item
IAO_0000111: data about an ontology part
definition: Data about an ontology part is a data item about a part of an ontology, for example a term
IAO_0000117: Person:Alan Ruttenberg

plan specification
type: Class
subclass of: directive information entity
subclass of: Restriction
  on property: has part
  some values from: objective specification
subclass of: Restriction
  on property: has part
  some values from: action specification
IAO_0000111: plan specification
example of usage: PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.
has curation status: ready for release
definition: A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.
IAO_0000116: 2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
IAO_0000116: 2014-03-31: A plan specification can have other parts, such as conditional specifications.
IAO_0000116: Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved
IAO_0000117: Alan Ruttenberg
definition source: OBI Plan and Planned Process branch
definition source: OBI_0000344
comment: 2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them

measurement datum
type: Class
subclass of: data item
subclass of: Restriction
  on property: has value specification
  some values from: value specification
IAO_0000111: measurement datum
example of usage: Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.
has curation status: pending final vetting
definition: A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.
IAO_0000116: 2/2/2009 is_specified_output of some assay?
IAO_0000117: person:Chris Stoeckert
definition source: OBI_0000305
definition source: group:OBI

material information bearer
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: Restriction
      on property: concretizes
      some values from: information content entity
subclass of: material entity
subclass of: Restriction
  on property: bearer of
  some values from: Restriction
    on property: concretizes
    some values from: information content entity
IAO_0000111: material information bearer
example of usage: A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier.
example of usage: a brain
example of usage: a hard drive
has curation status: ready for release
definition: A material entity in which a concretization of an information content entity inheres.
IAO_0000117: GROUP: IAO

histogram
type: Class
subclass of: graph
IAO_0000111: histogram
has curation status: ready for release
definition: A histogram is a report graph which is a statistical description of a distribution in terms of occurrence frequencies of different event classes.
IAO_0000117: PERSON:Chris Stoeckert
IAO_0000117: PERSON:James Malone
IAO_0000117: PERSON:Melanie Courtot
definition source: GROUP:OBI

heatmap
type: Class
subclass of: graph
IAO_0000111: heatmap
has curation status: ready for release
definition: A heatmap is a report graph which is a graphical representation of data where the values taken by a variable(s) are shown as colors in a two-dimensional map.
IAO_0000117: PERSON:Chris Stoeckert
IAO_0000117: PERSON:James Malone
IAO_0000117: PERSON:Melanie Courtot
definition source: GROUP:OBI

dendrogram
type: Class
subclass of: graph
IAO_0000111: dendrogram
example of usage: Dendrograms are often used in computational biology to illustrate the clustering of genes.
has curation status: ready for release
definition: A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm.
IAO_0000117: PERSON:Chris Stoeckert
IAO_0000117: PERSON:James Malone
IAO_0000117: PERSON:Melanie Courtot
definition source: WEB: http://en.wikipedia.org/wiki/Dendrogram

scatter plot
type: Class
subclass of: graph
IAO_0000111: scatter plot
example of usage: Comparison of gene expression values in two samples can be displayed in a scatter plot
has curation status: ready for release
definition: A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.
IAO_0000117: PERSON:Chris Stoeckert
IAO_0000117: PERSON:James Malone
IAO_0000117: PERSON:Melanie Courtot
alternative term: scattergraph
definition source: WEB: http://en.wikipedia.org/wiki/Scatterplot

obsolescence reason specification
type: Class
equivalent class: Class
  one of: failed exploratory term
  one of: placeholder removed
  one of: terms merged
  one of: term imported
  one of: term split
subclass of: data about an ontology part
IAO_0000111: obsolescence reason specification
has curation status: pending final vetting
definition: The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
IAO_0000116: The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Melanie Courtot

figure
type: Class
subclass of: information content entity
IAO_0000111: figure
example of usage: Any picture, diagram or table
has curation status: metadata complete
definition: An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.
IAO_0000117: PERSON: Lawrence Hunter

diagram
type: Class
subclass of: figure
IAO_0000111: diagram
example of usage: A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space.
has curation status: metadata complete
definition: A figure that expresses one or more propositions
IAO_0000117: PERSON: Lawrence Hunter

document
type: Class
subclass of: information content entity
IAO_0000111: document
example of usage: A journal article, patent application, laboratory notebook, or a book
has curation status: metadata complete
definition: A collection of information content entities intended to be understood together as a whole
IAO_0000117: PERSON: Lawrence Hunter

denotator type
type: Class
equivalent class: Class
  one of: universal
  one of: defined class
  one of: named class expression
subclass of: data about an ontology part
IAO_0000111: denotator type
example of usage: The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
definition: A denotator type indicates how a term should be interpreted from an ontological perspective.
IAO_0000117: Alan Ruttenberg
definition source: Barry Smith, Werner Ceusters

Viruses
type: Class
subclass of: organism
IAO_0000111: Viruses
imported from: ncbitaxon.owl

Euteleostomi
type: Class
subclass of: Vertebrata <vertebrates>
IAO_0000111: Euteleostomi
alternative term: bony vertebrates
imported from: ncbitaxon.owl

Bacteria
type: Class
subclass of: organism
IAO_0000111: Bacteria
alternative term: eubacteria
imported from: ncbitaxon.owl

Archaea
type: Class
subclass of: organism
IAO_0000111: Archaea
imported from: ncbitaxon.owl

Eukaryota
type: Class
subclass of: organism
IAO_0000111: Eukaryota
alternative term: eucaryotes
alternative term: eukaryotes
imported from: ncbitaxon.owl

Euarchontoglires
type: Class
subclass of: Mammalia
IAO_0000111: Euarchontoglires
imported from: ncbitaxon.owl

Tetrapoda
type: Class
subclass of: Euteleostomi
IAO_0000111: Tetrapoda
alternative term: tetrapods
imported from: ncbitaxon.owl

Amniota
type: Class
subclass of: Tetrapoda
IAO_0000111: Amniota
alternative term: amniotes
imported from: ncbitaxon.owl

Opisthokonta
type: Class
subclass of: Eukaryota
IAO_0000111: Opisthokonta
imported from: ncbitaxon.owl

Metazoa
type: Class
subclass of: Opisthokonta
IAO_0000111: Metazoa
alternative term: metazoans
alternative term: multicellular animals
imported from: ncbitaxon.owl

Bilateria
type: Class
subclass of: Metazoa
IAO_0000111: Bilateria
imported from: ncbitaxon.owl

Mammalia
type: Class
subclass of: Amniota
IAO_0000111: Mammalia
alternative term: mammals
imported from: ncbitaxon.owl

Vertebrata <vertebrates>
type: Class
subclass of: Bilateria
IAO_0000111: Vertebrata <vertebrates>
alternative term: Vertebrata
alternative term: vertebrates
imported from: ncbitaxon.owl

Homo sapiens
type: Class
subclass of: Euarchontoglires
IAO_0000111: Homo sapiens
alternative term: human
alternative term: human being
imported from: ncbitaxon.owl

planned process
type: Class
equivalent class: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
subclass of: process
subclass of: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
IAO_0000111: planned process
example of usage: Injecting mice with a vaccine in order to test its efficacy
has curation status: ready for release
definition: A process that realizes a plan which is the concretization of a plan specification.
IAO_0000116: 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
IAO_0000116: We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process.
IAO_0000117: Bjoern Peters
definition source: branch derived
IAO_0000232: 6/11/9: Edited at workshop. Used to include: is initiated by an agent
IAO_0000232: This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)
imported from: obi.owl

regulator role
type: Class
subclass of: regulatory role
IAO_0000111: regulator role
example of usage: Fact sheet - Regulating the companies The role of the regulator. Ofwat is the economic regulator of the water and sewerage industry in England and Wales. http://www.ofwat.gov.uk/aptrix/ofwat/publish.nsf/Content/roleofregulator_factsheet170805
has curation status: metadata complete
definition: a regulatory role involved with making and/or enforcing relevant legislation and governmental orders
IAO_0000117: Person:Jennifer Fostel
alternative term: regulator
definition source: OBI

regulatory role
type: Class
subclass of: role
IAO_0000111: regulatory role
example of usage: Regulatory agency, Ethics committee, Approval letter; example: Browse these EPA Regulatory Role subtopics http://www.epa.gov/ebtpages/enviregulatoryrole.html Feb 29, 2008
has curation status: metadata complete
definition: a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body.
IAO_0000117: GROUP: Role branch
definition source: OBI, CDISC
IAO_0000232: govt agents responsible for creating regulations; proxies for enforcing regulations. CDISC definition: regulatory authorities. Bodies having the power to regulate. NOTE: In the ICH GCP guideline the term includes the authorities that review submitted clinical data and those that conduct inspections. These bodies are sometimes referred to as competent

material supplier role
type: Class
subclass of: service provider role
IAO_0000111: material supplier role
example of usage: Jackson Labs is an organization which provide mice as experimental material
has curation status: metadata complete
definition: a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation.
IAO_0000116: Supplier role is a special kind of service, e.g. biobank
IAO_0000117: PERSON:Jennifer Fostel
alternative term: material provider role
alternative term: supplier

classified data set
type: Class
equivalent class: Restriction
  on property: is_specified_output_of
  some values from: class prediction data transformation
subclass of: data set
subclass of: Restriction
  on property: is_specified_output_of
  some values from: class prediction data transformation
IAO_0000111: classified data set
has curation status: pending final vetting
definition: A data set that is produced as the output of a class prediction data transformation and consists of a data set with assigned class labels.
IAO_0000117: PERSON: James Malone
IAO_0000117: PERSON: Monnie McGee
alternative term: data set with assigned class labels

processed material
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: is_specified_output_of
    some values from: material processing
subclass of: material entity
subclass of: Restriction
  on property: is_specified_output_of
  some values from: material processing
IAO_0000111: processed material
example of usage: Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples
has curation status: ready for release
definition: Is a material entity that is created or changed during material processing.
IAO_0000117: PERSON: Alan Ruttenberg

evaluant role
type: Class
subclass of: role
subclass of: Restriction
  on property: characteristic of
  some values from: material entity
subclass of: Restriction
  on property: realized in
  all values from: assay
IAO_0000111: evaluant role
example of usage: When a specimen of blood is assayed for glucose concentration, the blood has the evaluant role. When measuring the mass of a mouse, the evaluant is the mouse. When measuring the time of DNA replication, the evaluant is the DNA. When measuring the intensity of light on a surface, the evaluant is the light source.
has curation status: ready for release
definition: a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role
IAO_0000116: Role call - 17nov-08: JF and MC think an evaluant role is always specified input of a process. Even in the case where we have an assay taking blood as evaluant and outputting blood, the blood is not the specified output at the end of the assay (the concentration of glucose in the blood is)
IAO_0000116: examples of features that could be described in an evaluant: quality.... e.g. "contains 10 pg/ml IL2", or "no glucose detected")
IAO_0000117: GROUP: Role Branch
definition source: OBI
IAO_0000232: Feb 10, 2009. changes after discussion at OBI Consortium Workshop Feb 2-6, 2009. accepted as core term.

assay
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: assay objective
subclass of: planned process
subclass of: Restriction
  on property: realizes
  some values from: evaluant role
subclass of: Restriction
  on property: has_specified_input
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: has role
      some values from: evaluant role
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    intersection of: data item
    intersection of: Restriction
      on property: is about
      some values from: Class
        intersection of: material entity
        intersection of: Restriction
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: assay objective
disjoint with: data transformation
IAO_0000111: assay
example of usage: Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house.
has curation status: ready for release
definition: A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.
IAO_0000116: 12/3/12: BP: the reference to the 'physical examination' is included to point out that a prediction is not an assay, as that does not require physical examiniation.
IAO_0000117: PlanAndPlannedProcess Branch
alternative term: measuring
alternative term: scientific observation
definition source: OBI branch derived
ISA alternative term: study assay
IEDB alternative term: any method

material processing
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: material transformation objective
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: processed material
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: material transformation objective
subclass of: Restriction
  on property: has_specified_input
  all values from: material entity
IAO_0000111: material processing
example of usage: A cell lysis, production of a cloning vector, creating a buffer.
has curation status: ready for release
definition: A planned process which results in physical changes in a specified input material
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Frank Gibson
IAO_0000117: PERSON: Jennifer Fostel
IAO_0000117: PERSON: Melanie Courtot
IAO_0000117: PERSON: Philippe Rocca Serra
alternative term: material transformation
definition source: OBI branch derived

specimen role
type: Class
subclass of: role
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: is_specified_output_of
      some values from: specimen collection process
IAO_0000111: specimen role
example of usage: liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient.
has curation status: ready for release
definition: a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation
IAO_0000116: 22Jun09. The definition includes whole organisms, and can include a human. The link between specimen role and study subject role has been removed. A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000116: blood taken from animal: animal continues in study, whereas blood has role specimen. something taken from study subject, leaves the study and becomes the specimen.
IAO_0000116: parasite example - when parasite in people we study people, people are subjects and parasites are specimen - when parasite extracted, they become subject in the following study specimen can later be subject.
IAO_0000117: GROUP: Role Branch
definition source: OBI
IAO_0000233: https://github.com/obi-ontology/obi/issues/1013

organization
type: Class
subclass of: material entity
IAO_0000111: organization
example of usage: PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods.
has curation status: ready for release
definition: An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.
IAO_0000116: BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based: 1) there are organization_member_roles (president, treasurer, branch editor), with individual persons as bearers 2) there are organization_roles (employer, owner, vendor, patent holder) 3) an organization has a charter / rules / bylaws, which specify what roles there are, how they should be realized, and how to modify the charter/rules/bylaws themselves. It is debatable what the organization itself is (some kind of dependent continuant or an aggregate of people). This also determines who/what the bearer of organization_roles' are. My personal favorite is still to define organization as a kind of 'legal entity', but thinking it through leads to all kinds of questions that are clearly outside the scope of OBI. Interestingly enough, it does not seem to matter much where we place organization itself, as long as we can subclass it (University, Corporation, Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO, W3C, University of Oklahoma), and have it play roles. This leads to my proposal: We define organization through the statements 1 - 3 above, but without an 'is a' statement for now. We can leave it in its current place in the is_a hierarchy (material entity) or move it up to 'continuant'. We leave further clarifications to BFO, and close this issue for now.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Philippe Rocca-Serra
IAO_0000117: PERSON: Susanna Sansone
definition source: GROUP: OBI

protocol
type: Class
subclass of: plan specification
IAO_0000111: protocol
example of usage: PCR protocol, has objective specification, amplify DNA fragment of interest, and has action specification describes the amounts of experimental reagents used (e..g. buffers, dNTPS, enzyme), and the temperature and cycle time settings for running the PCR.
has curation status: ready for release
definition: A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.
IAO_0000117: PlanAndPlannedProcess Branch
definition source: OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)
ISA alternative term: study protocol

heat function
type: Class
subclass of: function
IAO_0000111: heat function
has curation status: ready for release
definition: A heat function is a function that increases the internal kinetic energy of a material
IAO_0000117: Bill Bug
IAO_0000117: Daniel Schober
IAO_0000117: Frank Gibson
IAO_0000117: Melanie Courtot

mechanical function
type: Class
subclass of: function
IAO_0000111: mechanical function
has curation status: ready for release
definition: A mechanical function is a function that is realised via mechanical work (through an certain amount of energy transferred by some force).
IAO_0000117: Bill Bug
IAO_0000117: Daniel Schober
IAO_0000117: Frank Gibson
IAO_0000117: Melanie Courtot
definition source: http://en.wikipedia.org/wiki/Mechanical_work

cool function
type: Class
subclass of: function
IAO_0000111: cool function
has curation status: ready for release
definition: A cool function is a function to decrease the internal kinetic energy of a material below the initial kinetic energy of that type of material.
IAO_0000117: Daniel Schober
IAO_0000117: Frank Gibson
IAO_0000117: Melanie Courtot

environment control function
type: Class
subclass of: function
IAO_0000111: environment control function
has curation status: ready for release
definition: An environmental control function is a function that regulates a contained environment within specified parameter ranges. For example the control of light exposure, humidity and temperature.
IAO_0000117: Bill Bug
IAO_0000117: Daniel Schober
IAO_0000117: Frank Gibson
IAO_0000117: Melanie Courtot

assay objective
type: Class
subclass of: objective specification
IAO_0000111: assay objective
example of usage: the objective to determine the weight of a mouse.
has curation status: ready for release
definition: an objective specification to determine a specified type of information about an evaluated entity (the material entity bearing evaluant role)
IAO_0000117: PPPB branch
definition source: PPPB branch

regulatory agency
type: Class
equivalent class: Class
  intersection of: organization
  intersection of: Restriction
    on property: has role
    some values from: regulator role
subclass of: organization
subclass of: Restriction
  on property: has role
  some values from: regulator role
IAO_0000111: regulatory agency
example of usage: The US Environmental Protection Agency
has curation status: ready for release
definition: A regulatory agency is a organization that has responsibility over or for the legislation (acts and regulations) for a given sector of the government.
IAO_0000117: GROUP: OBI Biomaterial Branch
definition source: WEB: en.wikipedia.org/wiki/Regulator

measure function
type: Class
subclass of: function
subclass of: Restriction
  on property: function of
  some values from: processed material
subclass of: Restriction
  on property: realized in
  all values from: Restriction
    on property: has_specified_output
    some values from: measurement datum
IAO_0000111: measure function
example of usage: A glucometer measures blood glucose concentration, the glucometer has a measure function.
has curation status: ready for release
definition: Measure function is a function that is borne by a processed material and realized in a process in which information about some entity is expressed relative to some reference.
IAO_0000117: PERSON: Daniel Schober
IAO_0000117: PERSON: Helen Parkinson
IAO_0000117: PERSON: Melanie Courtot
IAO_0000117: PERSON:Frank Gibson

material transformation objective
type: Class
subclass of: objective specification
IAO_0000111: material transformation objective
example of usage: The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS.
has curation status: ready for release
definition: an objective specifiction that creates an specific output object from input materials.
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Frank Gibson
IAO_0000117: PERSON: Jennifer Fostel
IAO_0000117: PERSON: Melanie Courtot
IAO_0000117: PERSON: Philippe Rocca-Serra
alternative term: artifact creation objective
definition source: GROUP: OBI PlanAndPlannedProcess Branch

manufacturing
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: manufacturing objective
subclass of: material processing
subclass of: Restriction
  on property: has_specified_input
  some values from: material entity
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: manufacturing objective
IAO_0000111: manufacturing
has curation status: ready for release
definition: Manufacturing is a process with the intent to produce a processed material which will have a function for future use. A person or organization (having manufacturer role) is a participant in this process
IAO_0000116: Manufacturing implies reproducibility and responsibility AR
IAO_0000116: This includes a single scientist making a processed material for personal use.
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Frank Gibson
IAO_0000117: PERSON: Jennifer Fostel
IAO_0000117: PERSON: Melanie Courtot
IAO_0000117: PERSON: Philippe Rocca-Serra
definition source: GROUP: OBI PlanAndPlannedProcess Branch

manufacturing objective
type: Class
subclass of: material transformation objective
IAO_0000111: manufacturing objective
has curation status: ready for release
definition: is the objective to manufacture a material of a certain function (device)
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Frank Gibson
IAO_0000117: PERSON: Jennifer Fostel
IAO_0000117: PERSON: Melanie Courtot
IAO_0000117: PERSON: Philippe Rocca-Serra
definition source: GROUP: OBI PlanAndPlannedProcess Branch

manufacturer role
type: Class
subclass of: role
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    union of: Homo sapiens
    union of: organization
subclass of: Restriction
  on property: realized in
  all values from: manufacturing
IAO_0000111: manufacturer role
example of usage: With respect to The Accuri C6 Flow Cytometer System, the organization Accuri bears the role manufacturer role. With respect to a transformed line of tissue culture cells derived by a specific lab, the lab whose personnel isolated the cll line bears the role manufacturer role. With respect to a specific antibody produced by an individual scientist, the scientist who purifies, characterizes and distributes the anitbody bears the role manufacturer role.
has curation status: metadata incomplete
definition: Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process.
IAO_0000117: GROUP: Role Branch
definition source: OBI

clustered data set
type: Class
equivalent class: Restriction
  on property: is_specified_output_of
  some values from: class discovery data transformation
subclass of: data set
subclass of: Restriction
  on property: is_specified_output_of
  some values from: class discovery data transformation
IAO_0000111: clustered data set
example of usage: A clustered data set is the output of a K means clustering data transformation
has curation status: pending final vetting
definition: A data set that is produced as the output of a class discovery data transformation and consists of a data set with assigned discovered class labels.
IAO_0000117: PERSON: James Malone
IAO_0000117: PERSON: Monnie McGee
alternative term: data set with assigned discovered class labels
IAO_0000232: AR thinks could be a data item instead

specimen collection process
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: specimen collection objective
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: material entity
subclass of: Restriction
  on property: has_specified_output
  some values from: specimen
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: specimen collection objective
IAO_0000111: specimen collection process
example of usage: drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation
has curation status: ready for release
definition: A planned process with the objective of collecting a specimen.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000116: Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role.
IAO_0000116: Philly2013: The specimen_role for the specimen is created during the specimen collection process.
IAO_0000116: label changed to 'specimen collection process' on 10/27/2014, details see tracker: http://sourceforge.net/p/obi/obi-terms/716/
IAO_0000117: Bjoern Peters
alternative term: specimen collection
IAO_0000232: 5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession
IAO_0000232: 6/9/09: used at workshop

class prediction data transformation
type: Class
equivalent class: Class
  union of: Restriction
    on property: has_specified_output
    some values from: classified data set
  union of: Restriction
    on property: achieves_planned_objective
    some values from: class prediction objective
subclass of: data transformation
IAO_0000111: class prediction data transformation
has curation status: ready for release
definition: A class prediction data transformation (sometimes called supervised classification) is a data transformation that has objective class prediction.
IAO_0000117: James Malone
alternative term: supervised classification data transformation
definition source: PERSON: James Malone

specimen collection objective
type: Class
subclass of: objective specification
IAO_0000111: specimen collection objective
example of usage: The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient.
has curation status: ready for release
definition: A objective specification to obtain a material entity for potential use as an input during an investigation.
IAO_0000117: Bjoern Peters
definition source: Bjoern Peters

support vector machine
type: Class
subclass of: class prediction data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: class prediction objective
IAO_0000111: support vector machine
has curation status: metadata incomplete
definition: A support vector machine is a data transformation with a class prediction objective based on the construction of a separating hyperplane that maximizes the margin between two data sets of vectors in n-dimensional space.
IAO_0000117: James Malone
IAO_0000117: Ryan Brinkman
alternative term: SVM
definition source: PERSON: Ryan Brinkman

decision tree induction objective
type: Class
subclass of: data transformation objective
IAO_0000111: decision tree induction objective
has curation status: metadata incomplete
definition: A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made.
IAO_0000117: James Malone

decision tree building data transformation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: decision tree induction objective
subclass of: data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: decision tree induction objective
IAO_0000111: decision tree building data transformation
has curation status: metadata complete
definition: A decision tree building data transformation is a data transformation that has objective decision tree induction.
IAO_0000117: James Malone
definition source: PERSON: James Malone

GenePattern software
type: Class
subclass of: software
IAO_0000111: GenePattern software
has curation status: metadata complete
definition: a software that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks.
IAO_0000117: James Malone
IAO_0000117: Person:Helen Parkinson
definition source: WEB: http://www.broadinstitute.org/cancer/software/genepattern/

peak matching
type: Class
subclass of: data transformation
IAO_0000111: peak matching
has curation status: metadata incomplete
definition: Peak matching is a data transformation performed on a dataset of a graph of ordered data points (e.g. a spectrum) with the objective of pattern matching local maxima above a noise threshold
IAO_0000117: James Malone
IAO_0000117: Ryan Brinkman
definition source: PERSON: Ryan Brinkman

k-nearest neighbors
type: Class
subclass of: dataset creating
subclass of: partitioning data transformation
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
IAO_0000111: k-nearest neighbors
has curation status: pending final vetting
definition: A k-nearest neighbors is a data transformation which achieves a class discovery or partitioning objective, in which an input data object with vector y is assigned to a class label based upon the k closest training data set points to y; where k is the largest value that class label is assigned.
IAO_0000117: James Malone
alternative term: k-NN
definition source: PERSON: James Malone

CART
type: Class
subclass of: decision tree building data transformation
IAO_0000111: CART
has curation status: ready for release
definition: A CART (classification and regression trees) is a data transformation method for producing a classification or regression model with a tree-based structure.
IAO_0000117: James Malone
alternative term: classification and regression trees
definition source: BOOK: David J. Hand, Heikki Mannila and Padhraic Smyth (2001) Principles of Data Mining.

statistical model validation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: cross validation objective
subclass of: partitioning data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: cross validation objective
IAO_0000111: statistical model validation
example of usage: Using the expression levels of 20 proteins to predict whether a cancer patient will respond to a drug. A practical goal would be to determine which subset of the 20 features should be used to produce the best predictive model. - wikipedia
has curation status: metadata complete
definition: A data transformation which assesses how the results of a statistical analysis will generalize to an independent data set.
IAO_0000117: Helen Parkinson
definition source: http://en.wikipedia.org/wiki/Cross-validation_%28statistics%29

measurement device
type: Class
equivalent class: Class
  intersection of: device
  intersection of: Restriction
    on property: has function
    some values from: measure function
subclass of: device
subclass of: Restriction
  on property: has function
  some values from: measure function
IAO_0000111: measurement device
example of usage: A ruler, a microarray scanner, a Geiger counter.
has curation status: ready for release
definition: A device in which a measure function inheres.
IAO_0000117: GROUP:OBI Philly workshop
definition source: OBI

manufacturer
type: Class
equivalent class: Class
  intersection of: Class
    union of: Homo sapiens
    union of: organization
  intersection of: Restriction
    on property: has role
    some values from: manufacturer role
subclass of: material entity
subclass of: Restriction
  on property: has role
  some values from: manufacturer role
IAO_0000111: manufacturer
has curation status: metadata incomplete
definition: A person or organization that has a manufacturer role

sterilization function
type: Class
subclass of: function
IAO_0000111: sterilization function
has curation status: metadata incomplete
definition: a function to remove viable organisms from an input material

service provider role
type: Class
subclass of: role
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    union of: Homo sapiens
    union of: organization
subclass of: Restriction
  on property: realized in
  all values from: planned process
IAO_0000111: service provider role
example of usage: Jackson Lab provides experimental animals, EBI provides training on databases, a core facility provides access to a DNA sequencer.
has curation status: metadata incomplete
definition: is a role which inheres in a person or organization and is realized in in a planned process which provides access to training, materials or execution of protocols for an organization or person
IAO_0000117: PERSON:Helen Parkinson

processed specimen
type: Class
equivalent class: Class
  intersection of: processed material
  intersection of: specimen
subclass of: processed material
subclass of: specimen
IAO_0000111: processed specimen
example of usage: A tissue sample that has been sliced and stained for a histology study. A blood specimen that has been centrifuged to obtain the white blood cells.
has curation status: ready for release
definition: A specimen that has been intentionally physically modified.
IAO_0000117: Bjoern Peters
definition source: Bjoern Peters
comment: A tissue sample that has been sliced and stained for a histology study.

categorical label
type: Class
subclass of: datum label
IAO_0000111: categorical label
example of usage: The labels 'positive' vs. 'negative', or 'left handed', 'right handed', 'ambidexterous', or 'strongly binding', 'weakly binding' , 'not binding', or '+++', '++', '+', '-' etc. form scales of categorical labels.
has curation status: metadata complete
definition: A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale.
IAO_0000117: Bjoern Peters
definition source: Bjoern Peters

device
type: Class
subclass of: processed material
subclass of: Restriction
  on property: has function
  some values from: function
IAO_0000111: device
example of usage: A voltmeter is a measurement device which is intended to perform some measure function.
example of usage: An autoclave is a device that sterlizes instruments or contaminated waste by applying high temperature and pressure.
has curation status: ready for release
definition: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent.
IAO_0000116: 2012-12-17 JAO: In common lab usage, there is a distinction made between devices and reagents that is difficult to model. Therefore we have chosen to specifically exclude reagents from the definition of "device", and are enumerating the types of roles that a reagent can perform. 2013-6-5 MHB: The following clarifications are outcomes of the May 2013 Philly Workshop. Reagents are distinguished from devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in some chemical interaction or reaction during the realization of their experimental role. By contrast, devices do not participate in such chemical reactions/interactions. Note that there are cases where devices use reagent components during their operation, where the reagent-device distinction is less clear. For example: (1) An HPLC machine is considered a device, but has a column that holds a stationary phase resin as an operational component. This resin qualifies as a device if it participates purely in size exclusion, but bears a reagent role that is realized in the running of a column if it interacts electrostatically or chemically with the evaluant. The container the resin is in (“the column”) considered alone is a device. So the entire column as well as the entire HPLC machine are devices that have a reagent as an operating part. (2) A pH meter is a device, but its electrode component bears a reagent role in virtue of its interacting directly with the evaluant in execution of an assay. (3) A gel running box is a device that has a metallic lead as a component that participates in a chemical reaction with the running buffer when a charge is passed through it. This metallic lead is considered to have a reagent role as a component of this device realized in the running of a gel. In the examples above, a reagent is an operational component of a device, but the device itself does not realize a reagent role (as bearing a reagent…
IAO_0000117: PERSON: Helen Parkinson
alternative term: instrument
definition source: OBI development call 2012-12-17.

questionnaire
type: Class
subclass of: document
IAO_0000111: questionnaire
has curation status: metadata complete
definition: A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study.
IAO_0000116: JT: It plays a role in collecting data that could be fleshed out more; but I'm thinking it is, in itself, an edited document. JZ: based on textual definition of edited document, it can be defined as N&S. I prefer to leave questionnaire as a document now. We can add more restrictions in the future and use that to determine it is an edited document or not.
IAO_0000116: Need to clarify if this is a document or a directive information entity (or what their connection is))
IAO_0000117: PERSON: Jessica Turner
definition source: Merriam-Webster

environmental control device
type: Class
equivalent class: Class
  intersection of: device
  intersection of: Restriction
    on property: has function
    some values from: Class
      union of: heat function
      union of: cool function
      union of: environment control function
subclass of: device
subclass of: Restriction
  on property: has function
  some values from: Class
    union of: heat function
    union of: cool function
    union of: environment control function
IAO_0000111: environmental control device
example of usage: A growth chamber is an environmental control device.
has curation status: metadata complete
definition: An environmental control device is a device which has the function to control some aspect of the environment such as temperature, or humidity.
IAO_0000117: Helen Parkinson
definition source: OBI

autoclave
type: Class
subclass of: environmental control device
subclass of: Restriction
  on property: has function
  some values from: heat function
subclass of: Restriction
  on property: has function
  some values from: mechanical function
subclass of: Restriction
  on property: has function
  some values from: sterilization function
IAO_0000111: autoclave
has curation status: metadata complete
definition: A device that is used to sterilize equipment and supplies by subjecting them to high pressure steam at 121 C or more, typically for 15 to 20 minutes depending on the size of the load and the contents.
IAO_0000117: PERSON: Erik Segerdell
definition source: J. Black, Microbiology, Prentice Hall (1993) pg. 334; http://en.wikipedia.org/wiki/Autoclave

categorical value specification
type: Class
subclass of: value specification
IAO_0000111: categorical value specification
has curation status: metadata incomplete
definition: A value specification that is specifies one category out of a fixed number of nominal categories
IAO_0000117: PERSON:Bjoern Peters

value specification
type: Class
subclass of: information content entity
IAO_0000111: value specification
example of usage: The value of 'positive' in a classification scheme of "positive or negative"; the value of '20g' on the quantitative scale of mass.
has curation status: ready for release
definition: An information content entity that specifies a value within a classification scheme or on a quantitative scale.
IAO_0000116: This term is currently a descendant of 'information content entity', which requires that it 'is about' something. A value specification of '20g' for a measurement data item of the mass of a particular mouse 'is about' the mass of that mouse. However there are cases where a value specification is not clearly about any particular. In the future we may change 'value specification' to remove the 'is about' requirement.
IAO_0000117: PERSON:Bjoern Peters

collection of specimens
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has member
    all values from: specimen
subclass of: material entity
IAO_0000111: collection of specimens
example of usage: Blood cells collected from multiple donors over the course of a study.
has curation status: pending final vetting
definition: A material entity that has two or more specimens as its parts.
IAO_0000116: Details see tracker: https://sourceforge.net/p/obi/obi-terms/778/
IAO_0000117: Person: Chris Stoeckert, Jie Zheng
definition source: OBIB, OBI
source: Biobank

histologic grade according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: histologic grade according to AJCC 7th edition
example of usage: G1:Well differentiated
example of usage: G4: Undifferentiated
has curation status: metadata complete
definition: A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the American Joint Committee on Cancer (AJCC) 7th Edition grading system.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

histologic grade according to the Fuhrman Nuclear Grading System
type: Class
subclass of: categorical value specification
IAO_0000111: histologic grade according to the Fuhrman Nuclear Grading System
has curation status: metadata complete
definition: A categorical value specification that is a histologic grade assigned to a tumor slide specimen according to the Fuhrman Nuclear Grading System.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Histologic Grade (Fuhrman Nuclear Grading System)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

histologic grade for ovarian tumor
type: Class
subclass of: categorical value specification
IAO_0000111: histologic grade for ovarian tumor
has curation status: metadata complete
definition: A categorical value specification that is a histologic grade assigned to a ovarian tumor.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

histologic grade for ovarian tumor according to a two-tier grading system
type: Class
subclass of: histologic grade for ovarian tumor
IAO_0000111: histologic grade for ovarian tumor according to a two-tier grading system
has curation status: metadata complete
definition: A histologic grade for ovarian tumor that is from a two-tier histological classification of tumors.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

histologic grade for ovarian tumor according to the World Health Organization
type: Class
subclass of: histologic grade for ovarian tumor
IAO_0000111: histologic grade for ovarian tumor according to the World Health Organization
has curation status: metadata complete
definition: A histologic grade for ovarian tumor that is from a histological classification by the World Health Organization (WHO).
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread colorectal primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic primary tumor stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic primary tumor stage for lung according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM American Joint Committee on Cancer (AJCC) version 7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread lung primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic primary tumor stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic primary tumor stage for kidney according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread kidney primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic primary tumor stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic primary tumor stage for ovary according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of the primary tumor. TNM pathologic primary tumor findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pT: Pathologic spread ovarian primary tumor (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic lymph node stage for colon and rectum according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of colorectal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic lymph node stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic lymph node stage for lung according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic lymph node stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic lymph node stage for kidney according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread kidney lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic lymph node stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic lymph node stage for ovary according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to staging of regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: pN: Pathologic spread ovarian lymph nodes (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic distant metastases stage for colon according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic distant metastases stage for colon according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of colon cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: M: colon distant metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic distant metastases stage for lung according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic distant metastases stage for lung according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of lung cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: M: lung distant metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic distant metastases stage for kidney according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic distant metastases stage for kidney according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of renal cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: M: kidney distant Metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pathologic distant metastases stage for ovary according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: pathologic distant metastases stage for ovary according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the TNM AJCC v7 classification system as they pertain to distant metastases. TNM pathologic distant metastasis findings are based on clinical findings supplemented by histopathologic examination of one or more tissue specimens acquired during surgery.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: M: ovarian distant metastases (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

clinical tumor stage group according to AJCC 7th edition
type: Class
subclass of: categorical value specification
IAO_0000111: clinical tumor stage group according to AJCC 7th edition
has curation status: metadata complete
definition: A categorical value specification that is an assessment of the stage of a cancer according to the American Joint Committee on Cancer (AJCC) v7 staging systems.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Clinical tumor stage group (AJCC 7th Edition)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

International Federation of Gynecology and Obstetrics cervical cancer stage value specification
type: Class
subclass of: categorical value specification
IAO_0000111: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
has curation status: metadata complete
definition: A categorical value specification that is an assessment of the stage of a gynecologic cancer according to the International Federation of Gynecology and Obstetrics (FIGO) staging systems.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Clinical FIGO stage
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
type: Class
subclass of: categorical value specification
IAO_0000111: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
has curation status: metadata complete
definition: A categorical value specification that is a pathologic finding about one or more characteristics of ovarian cancer following the rules of the FIGO classification system.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Pathologic Tumor Stage Grouping for ovarian cancer (FIGO)
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

performance status value specification
type: Class
subclass of: categorical value specification
IAO_0000111: performance status value specification
has curation status: metadata complete
definition: A categorical value specification that is an assessment of a participant's performance status (general well-being and activities of daily life).
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Performance Status Scale
definition source: https://en.wikipedia.org/wiki/Performance_status
IAO_0000234: NCI BBRB

Eastern Cooperative Oncology Group score value specification
type: Class
subclass of: performance status value specification
IAO_0000111: Eastern Cooperative Oncology Group score value specification
has curation status: metadata complete
definition: A performance status value specification designed by the Eastern Cooperative Oncology Group to assess disease progression and its affect on the daily living abilities of the patient.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: ECOG score
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

Karnofsky score vaue specification
type: Class
subclass of: performance status value specification
IAO_0000111: Karnofsky score vaue specification
has curation status: metadata complete
definition: A performance status value specification designed for classifying patients 16 years of age or older by their functional impairment.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Karnofsky Score
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

material supplier
type: Class
equivalent class: Class
  intersection of: Class
    union of: Homo sapiens
    union of: organization
  intersection of: Restriction
    on property: has role
    some values from: material supplier role
subclass of: material entity
subclass of: Restriction
  on property: has role
  some values from: material supplier role
IAO_0000111: material supplier
has curation status: metadata incomplete
definition: A person or organization that provides material supplies to other people or organizations.
IAO_0000117: Rebecca Jackson
IAO_0000233: https://github.com/obi-ontology/obi/issues/1289

organism
type: Class
equivalent class: Class
  union of: Viruses
  union of: Bacteria
  union of: Archaea
  union of: Eukaryota
subclass of: material entity
IAO_0000111: organism
example of usage: animal
example of usage: fungus
example of usage: plant
example of usage: virus
has curation status: ready for release
definition: A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
IAO_0000116: 10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')
IAO_0000116: 13-02-2009: OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. This issue is outside the scope of OBI.
IAO_0000117: GROUP: OBI Biomaterial Branch
definition source: WEB: http://en.wikipedia.org/wiki/Organism

specimen
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has role
    some values from: specimen role
subclass of: material entity
subclass of: Restriction
  on property: has role
  some values from: specimen role
IAO_0000111: specimen
example of usage: Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen.
has curation status: ready for release
definition: A material entity that has the specimen role.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000117: PERSON: James Malone
IAO_0000117: PERSON: Philippe Rocca-Serra
definition source: GROUP: OBI Biomaterial Branch
IAO_0000233: https://github.com/obi-ontology/obi/issues/1013

data transformation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: data transformation objective
subclass of: planned process
subclass of: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: Class
      intersection of: algorithm
      intersection of: Restriction
        on property: has part
        some values from: objective specification
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: data transformation objective
subclass of: Restriction
  on property: has_specified_input
  all values from: data item
IAO_0000111: data transformation
example of usage: The application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value.
has curation status: ready for release
definition: A planned process that produces output data from input data.
IAO_0000117: Elisabetta Manduchi
IAO_0000117: Helen Parkinson
IAO_0000117: James Malone
IAO_0000117: Melanie Courtot
IAO_0000117: Philippe Rocca-Serra
IAO_0000117: Richard Scheuermann
IAO_0000117: Ryan Brinkman
IAO_0000117: Tina Hernandez-Boussard
alternative term: data analysis
alternative term: data processing
definition source: Branch editors
imported from: obi.owl

leave one out cross validation method
type: Class
subclass of: statistical model validation
IAO_0000111: leave one out cross validation method
example of usage: The authors conducted leave-one-out cross validation to estimate the strength and accuracy of the differentially expressed filtered genes. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/3/368
has curation status: metadata incomplete
definition: is a data transformation : leave-one-out cross-validation (LOOCV) involves using a single observation from the original sample as the validation data, and the remaining observations as the training data. This is repeated such that each observation in the sample is used once as the validation data
IAO_0000116: 2009-11-10. Tracker: https://sourceforge.net/tracker/?func=detail&aid=2893049&group_id=177891&atid=886178
IAO_0000117: Person:Helen Parkinson

k-means clustering
type: Class
subclass of: dataset creating
subclass of: partitioning data transformation
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
IAO_0000111: k-means clustering
has curation status: pending final vetting
definition: A k-means clustering is a data transformation which achieves a class discovery or partitioning objective, which takes as input a collection of objects (represented as points in multidimensional space) and which partitions them into a specified number k of clusters. The algorithm attempts to find the centers of natural clusters in the data. The most common form of the algorithm starts by partitioning the input points into k initial sets, either at random or using some heuristic data. It then calculates the mean point, or centroid, of each set. It constructs a new partition by associating each point with the closest centroid. Then the centroids are recalculated for the new clusters, and the algorithm repeated by alternate applications of these two steps until convergence, which is obtained when the points no longer switch clusters (or alternatively centroids are no longer changed).
IAO_0000117: Elisabetta Manduchi
IAO_0000117: James Malone
IAO_0000117: Philippe Rocca-Serra
definition source: WEB: http://en.wikipedia.org/wiki/K-means

hierarchical clustering
type: Class
subclass of: dataset creating
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
IAO_0000111: hierarchical clustering
has curation status: pending final vetting
definition: A hierarchical clustering is a data transformation which achieves a class discovery objective, which takes as input data item and builds a hierarchy of clusters. The traditional representation of this hierarchy is a tree (visualized by a dendrogram), with the individual input objects at one end (leaves) and a single cluster containing every object at the other (root).
IAO_0000117: James Malone
definition source: WEB: http://en.wikipedia.org/wiki/Data_clustering#Hierarchical_clustering

dimensionality reduction
type: Class
subclass of: dataset creating
subclass of: class discovery data transformation
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
IAO_0000111: dimensionality reduction
has curation status: ready for release
definition: A dimensionality reduction is data partitioning which transforms each input m-dimensional vector (x_1, x_2, ..., x_m) into an output n-dimensional vector (y_1, y_2, ..., y_n), where n is smaller than m.
IAO_0000117: Elisabetta Manduchi
IAO_0000117: James Malone
IAO_0000117: Melanie Courtot
IAO_0000117: Philippe Rocca-Serra
alternative term: data projection
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone
definition source: PERSON: Melanie Courtot

principal components analysis dimensionality reduction
type: Class
subclass of: dimensionality reduction
IAO_0000111: principal components analysis dimensionality reduction
has curation status: ready for release
definition: A principal components analysis dimensionality reduction is a dimensionality reduction achieved by applying principal components analysis and by keeping low-order principal components and excluding higher-order ones.
IAO_0000117: Elisabetta Manduchi
IAO_0000117: James Malone
IAO_0000117: Melanie Courtot
IAO_0000117: Philippe Rocca-Serra
alternative term: pca data reduction
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone
definition source: PERSON: Melanie Courtot

data visualization
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: data item
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    union of: graph
    union of: image
subclass of: Restriction
  on property: has_specified_input
  all values from: data item
subclass of: Restriction
  on property: has_specified_output
  all values from: Class
    union of: graph
    union of: image
IAO_0000111: data visualization
example of usage: Generation of a heatmap from a microarray dataset
has curation status: ready for release
definition: An planned process that creates images, diagrams or animations from the input data.
IAO_0000117: Elisabetta Manduchi
IAO_0000117: James Malone
IAO_0000117: Melanie Courtot
IAO_0000117: Tina Boussard
alternative term: data encoding as image
alternative term: visualization
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone
definition source: PERSON: Melanie Courtot
definition source: PERSON: Tina Boussard
IAO_0000232: Possible future hierarchy might include this: information_encoding >data_encoding >>image_encoding

data transformation objective
type: Class
subclass of: objective specification
IAO_0000111: data transformation objective
example of usage: normalize objective
has curation status: ready for release
definition: An objective specification to transformation input data into output data
IAO_0000116: Modified definition in 2013 Philly OBI workshop
IAO_0000117: James Malone
definition source: PERSON: James Malone

partitioning data transformation
type: Class
equivalent class: Restriction
  on property: achieves_planned_objective
  some values from: partitioning objective
subclass of: data transformation
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: partitioning objective
IAO_0000111: partitioning data transformation
has curation status: metadata incomplete
definition: A partitioning data transformation is a data transformation that has objective partitioning.
IAO_0000117: James Malone
definition source: PERSON: James Malone

partitioning objective
type: Class
subclass of: data transformation objective
IAO_0000111: partitioning objective
example of usage: A k-means clustering which has partitioning objective is a data transformation in which the input data is partitioned into k output sets.
has curation status: ready for release
definition: A partitioning objective is a data transformation objective where the aim is to generate a collection of disjoint non-empty subsets whose union equals a non-empty input set.
IAO_0000117: Elisabetta Manduchi
IAO_0000117: James Malone
definition source: PERSON: Elisabetta Manduchi

class discovery data transformation
type: Class
equivalent class: Class
  union of: Restriction
    on property: has_specified_output
    some values from: clustered data set
  union of: Restriction
    on property: achieves_planned_objective
    some values from: class discovery objective
subclass of: data transformation
IAO_0000111: class discovery data transformation
has curation status: ready for release
definition: A class discovery data transformation (sometimes called unsupervised classification) is a data transformation that has objective class discovery.
IAO_0000117: James Malone
alternative term: clustering data transformation
alternative term: unsupervised classification data transformation
definition source: PERSON: James Malone

class discovery objective
type: Class
subclass of: data transformation objective
IAO_0000111: class discovery objective
has curation status: ready for release
definition: A class discovery objective (sometimes called unsupervised classification) is a data transformation objective where the aim is to organize input data (typically vectors of attributes) into classes, where the number of classes and their specifications are not known a priori. Depending on usage, the class assignment can be definite or probabilistic.
IAO_0000117: James Malone
alternative term: clustering objective
alternative term: discriminant analysis objective
alternative term: unsupervised classification objective
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone

class prediction objective
type: Class
subclass of: data transformation objective
IAO_0000111: class prediction objective
has curation status: ready for release
definition: A class prediction objective (sometimes called supervised classification) is a data transformation objective where the aim is to create a predictor from training data through a machine learning technique. The training data consist of pairs of objects (typically vectors of attributes) and class labels for these objects. The resulting predictor can be used to attach class labels to any valid novel input object. Depending on usage, the prediction can be definite or probabilistic. A classification is learned from the training data and can then be tested on test data.
IAO_0000117: James Malone
alternative term: classification objective
alternative term: supervised classification objective
definition source: PERSON: Elisabetta Manduchi
definition source: PERSON: James Malone

cross validation objective
type: Class
subclass of: partitioning objective
IAO_0000111: cross validation objective
has curation status: pending final vetting
definition: A cross validation objective is a data transformation objective in which the aim is to partition a sample of data into subsets such that the analysis is initially performed on a single subset, while the other subset(s) are retained for subsequent use in confirming and validating the initial analysis.
IAO_0000117: James Malone
alternative term: rotation estimation objective
definition source: WEB: http://en.wikipedia.org/wiki/Cross_validation

clustered data visualization
type: Class
subclass of: data visualization
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    union of: dot plot
    union of: histogram
    union of: heatmap
    union of: dendrogram
    union of: scatter plot
subclass of: Restriction
  on property: has_specified_input
  all values from: clustered data set
IAO_0000111: clustered data visualization
has curation status: metadata incomplete
definition: A data visualization which has input of a clustered data set and produces an output of a report graph which is capable of rendering data of this type.
IAO_0000117: James Malone

quality
type: Class
subclass of: specifically dependent continuant
definition: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
id: PATO:0000001

Axiom
annotated source: quality
annotated property: definition
annotated target: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
has db xref: PATOC:GVG

concentration of
type: Class
subclass of: molecular quality
IAO_0000111: concentration of
definition: A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
imported from: pato.owl

morphology
type: Class
subclass of: physical object quality
IAO_0000111: morphology
definition: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
imported from: pato.owl

length
type: Class
subclass of: morphology
IAO_0000111: length
definition: A 1-D extent quality which is equal to the distance between two points.
imported from: pato.owl

temperature
type: Class
subclass of: physical quality
IAO_0000111: temperature
definition: A physical quality of the thermal energy of a system.
imported from: pato.owl

physical quality
type: Class
subclass of: physical object quality
IAO_0000111: physical quality
definition: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
imported from: pato.owl

pressure
type: Class
subclass of: physical quality
IAO_0000111: pressure
definition: A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts.
imported from: pato.owl

physical object quality
type: Class
subclass of: quality
IAO_0000111: physical object quality
definition: A quality which inheres in a continuant.
imported from: pato.owl

electromagnetic (EM) radiation quality
type: Class
subclass of: radiation quality
IAO_0000111: electromagnetic (EM) radiation quality
definition: A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
imported from: pato.owl

optical quality
type: Class
subclass of: electromagnetic (EM) radiation quality
IAO_0000111: optical quality
definition: An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
imported from: pato.owl

quality of a solid
type: Class
subclass of: quality of a substance
IAO_0000111: quality of a solid
definition: A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.
imported from: pato.owl

quality of a liquid
type: Class
subclass of: quality of a substance
IAO_0000111: quality of a liquid
definition: A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.
imported from: pato.owl

radiation quality
type: Class
subclass of: physical quality
IAO_0000111: radiation quality
definition: A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
imported from: pato.owl

molecular quality
type: Class
subclass of: physical object quality
IAO_0000111: molecular quality
definition: A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
imported from: pato.owl

quality of a substance
type: Class
subclass of: physical quality
IAO_0000111: quality of a substance
definition: A quality inhering in a bearer by virtue of its constitution.
imported from: pato.owl

length unit
type: Class
subclass of: measurement unit label
IAO_0000111: length unit
definition: A unit which is a standard measure of the distance between two points.
imported from: uo.owl

mass unit
type: Class
subclass of: measurement unit label
IAO_0000111: mass unit
definition: A unit which is a standard measure of the amount of matter/energy of a physical object.
imported from: uo.owl

time unit
type: Class
subclass of: measurement unit label
IAO_0000111: time unit
definition: A unit which is a standard measure of the dimension in which events occur in sequence.
imported from: uo.owl

temperature unit
type: Class
subclass of: measurement unit label
IAO_0000111: temperature unit
imported from: uo.owl

substance unit
type: Class
subclass of: measurement unit label
IAO_0000111: substance unit
imported from: uo.owl

concentration unit
type: Class
subclass of: measurement unit label
IAO_0000111: concentration unit
imported from: uo.owl

volume unit
type: Class
subclass of: measurement unit label
IAO_0000111: volume unit
imported from: uo.owl

frequency unit
type: Class
subclass of: measurement unit label
IAO_0000111: frequency unit
imported from: uo.owl

volumetric flow rate unit
type: Class
subclass of: measurement unit label
IAO_0000111: volumetric flow rate unit
imported from: uo.owl

rate unit
type: Class
subclass of: measurement unit label
IAO_0000111: rate unit
imported from: uo.owl

measurement quality [imr]
type: Class
subclass of: quality
has curation status: uncurated
definition: In relation to optical measuring methods a rating for the precision of a reconstructed measurement object
alternative term: is quality measurement (http://purl.obolibrary.org/obo/IAO_0000221 - m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q). TIB terminological service.
last update on: 18.08.2022
coarse classification: quality

extrudate [imr]
type: Class
subclass of: material entity
definition: definded rigid Object based as result of an extrusion process
coarse classification: material entity

geometry [imr]
type: Class
subclass of: quality
coarse classification: quality

geometry [geosparql]
type: Class
subclass of: quality
has curation status: uncurated
definition: A coherent set of direct positions in space. The positions are held within a Spatial Reference System (SRS).
definition source: http://www.opengis.net/ont/geosparql#Geometry
imported from: geosparql#
language: English
last update on: 18.08.2022
coarse classification: quality

point cloud [imr]
type: Class
subclass of: information content entity
definition: A gathering of individual points with an with an unstructured spatial structure
coarse classification: information content entity

triangulation [imr]
type: Class
subclass of: plan specification
definition: geometrical method to determine distances between to points
coarse classification: plan specification

millimeter [imr]
type: Class
subclass of: UO_1000008
has curation status: uncurated
has_exact_synonym: mm
coarse classification: quality

millimeter [nist]
type: Class
subclass of: UO_1000008
has curation status: uncurated
definition: "A length unit which is equal to one thousandth of a meter or 10^[-3] m." [NIST:NIST]
alternative term: mm MILLIMETER Millimeter millimeter(s) millimeter
definition source: https://ontobee.org/ontology/UO
imported from: uo.owl
language: English
last update on: 18.08.2022
has_exact_synonym: mm
comment: Imported from ontocomons, also present in TIB terminological service
is defined by: NIST (OntoCommons)
coarse classification: quality

surface of extrudate [imr]
type: Class
subclass of: immaterial entity
definition: uppermost layer of the extrudate
coarse classification: immaterial entity

line in the surface of extrudate [imr]
type: Class
subclass of: immaterial entity
definition: cutout of a single line of the extrudate surface
coarse classification: immaterial entity

shape [imr]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition source: https://ontobee.org/ontology/PATO
imported from: PATO
language: English
last update on: 15.08.2022
coarse classification: immaterial entity

shape [ncit]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: The spatial arrangement of something as distinct from its substance.
definition source: http://purl.obolibrary.org/obo/NCIT_C25677
imported from: ncit.owl
language: English
last update on: 18.08.2022
coarse classification: immaterial entity

shape [pato]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
definition source: http://purl.obolibrary.org/obo/PATO_0000052
imported from: PATO
language: English
last update on: 18.08.2022
coarse classification: immaterial entity

stitching process [imr]
type: Class
subclass of: process
definition: use of different algorithms to determine the exact allignment respectively the characteristik shared edges
coarse classification: process

stitching method [imr]
type: Class
subclass of: plan specification
definition: alligning of single measurements to form a connected/combined measurement
coarse classification: plan specification

distance between sensor and extrudate [imr]
type: Class
subclass of: quality
coarse classification: quality

extrudate norm [imr]
type: Class
subclass of: information content entity
definition: ideal dimensions and shape of the extrudate defined by the manufacturer
coarse classification: information content entity

standard deviation [imr]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: a quantity expressing by how much the members of a group differ from the mean value for the group
last update on: 15.08.2021
coarse classification: information content entity

standard deviation [Wikipedia]
type: Class
subclass of: information content entity
definition: The standard deviation is a measure of the amount of variation or dispersion of a set of values. [Wikipedia]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0002192
imported from: purl.allotrope.org
comment: from ontocommons skos:definition

standard deviation [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A measure of the range of values in a set of numbers. Standard deviation is a statistic used as a measure of the dispersion or variation in a distribution, equal to the square root of the arithmetic mean of the squares of the deviations from the arithmetic mean.
definition source: http://purl.obolibrary.org/obo/NCIT_C53322
imported from: ncit.owl
language: English
last update on: 18.08.2022
comment: TIB terminological service
coarse classification: information content entity

interior orientation [jade]
type: Class
subclass of: information content entity
definition: "The interior (intrinsic) orientation of a camera comprises all instrumental and mathematical elements which completely describe the imaging model within the camera. By taking proper account of the interior orientation, the real camera conforms to the pinhole camera model. It is a requirement of the model that there exists a reproducible image coordinate system so that geometric image values, such as measured image coordinates, can be transformed into the physical-mathematical imaging model." (Luhmann et al. 2020: 162). A standard model of describing the interior orientation was proposed by D.C. Brown (1971)
definition source: Luhmann, Robson, Kyle & Boehm (2020): Close-Range Photogrammetry and 3D Imaging, 3rd ed. De Gruyter: Berlin, Boston
comment: 0
coarse classification: information content entity

camera coordinate system [jade]
type: Class
subclass of: quality
definition: "The camera coordinate system has its origin at the perspective centre of the image. It is further defined by reference features fixed in the camera (fiducial marks, réseau, sensor system). It can therefore be reconstructed from the image and related to an image measuring device" (Luhmann et al. 2020: 278)
definition source: Luhmann, Robson, Kyle & Boehm (2020): Close-Range Photogrammetry and 3D Imaging, 3rd ed. De Gruyter: Berlin, Boston
coarse classification: quality

exterior orientation [jade]
type: Class
subclass of: information content entity
definition: "The exterior orientation consists of six parameters which describe the spatial position and orientation of the camera coordinate system with respect to the global object coordinate system" (Luhmann et al. 2020: 277)
definition source: Luhmann, Robson, Kyle & Boehm (2020): Close-Range Photogrammetry and 3D Imaging, 3rd ed. De Gruyter: Berlin, Boston
coarse classification: information content entity

camera calibration [jade]
type: Class
subclass of: quality
definition: "The photogrammetric determination of the parameters of interior orientation is usually referred to as calibration. This is based on the idea that once a mechanically stable camera is calibrated, it may be moved from one image taking location to another whilst retaining its calibration." (Luhmann, Robson et al. 2020: 170)
definition source: Luhmann, Robson, Kyle & Boehm (2020): Close-Range Photogrammetry and 3D Imaging, 3rd ed. De Gruyter: Berlin, Boston
coarse classification: quality

bundle adjustment [jade]
type: Class
subclass of: plan specification
definition: "Bundle adjustment [...] is a method for the simultaneous numerical fit of an unlimited number of spatially distributed images (bundles of rays). It makes use of photogrammetric observations (measured image points), survey observations and an object coordinate system. Using tie points, single images are merged into a global model in which the object surface can be reconstructed in three dimensions." (Luhmann et al. 2020: 349f.)
alternative term: bundle triangulation, bundle block adjustment, multi-image triangulation, multi-image orientation
definition source: Luhmann, Robson, Kyle & Boehm (2020): Close-Range Photogrammetry and 3D Imaging, 3rd ed. De Gruyter: Berlin, Boston
coarse classification: plan specification

agent [ita]
type: Class
subclass of: role
definition: An agent is a system that perceives its environment through sensors and can interact with it through actions.
label: Agent @de
coarse classification: role

agent [ncti]
type: Class
subclass of: role
has curation status: uncurated
definition: An active power or cause (as principle, substance, physical or biological factor, etc.) that produces a specific effect.
definition source: http://purl.obolibrary.org/obo/NCIT_C1708
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: role

approximation [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Approximation is a technique for approximating a value using historical or available observations from the domain.
Contributor: Luis Ramos
language: English
label: Approximationsmethode @de
coarse classification: plan specification

function approximation [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Function approximation is a technique for estimating an unknown underlying function using historical or available observations from the domain.
Contributor: Luis Ramos
language: English
label: Funktionsapproximationsmethode @de
coarse classification: plan specification

reinforcement learning [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Reinforcement learning is a set of machine learning methods in which an agent autonomously learns a strategy to maximize a reward. Algorithms follow the trail-and-error principle, thus try several strategies and repeat those with a higher reward. During the training the agent produces an input, while the target output is only known to a teacher. The teacher gives feedback to the agent in form of a reward.
Contributor: Luis Ramos
language: English
label: bestärkendes Lernen @de
coarse classification: plan specification

library [ita]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Libraries in programming languages are collections of prewritten code that users can use to optimize tasks.
Contributor: Luis Ramos
language: English
label: Bibliothek @de
coarse classification: information content entity

cluster analysis [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Clustering or cluster analysis is a unsupervised machine learning technique, which groups the unlabelled dataset. It can be defined as a way of grouping the data points into different clusters, consisting of similar data points.
Contributor: Luis Ramos
language: English
label: Clusteranalyse @de
coarse classification: plan specification

cluster analysis [ncti]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Methods for grouping objects into subsets such that those within each cluster are more closely related to one another than objects assigned to different clusters.
definition source: http://purl.obolibrary.org/obo/NCIT_C15426
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

data mining [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A Database is a System for describing, storing and retrieving large amounts of data.
Contributor: Luis Ramos
language: English
label: Data Mining @de
coarse classification: plan specification

data mining [edam]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: An information set with a regular structure. Although it can be applied to any set of information the term was invented to refer to computerized data, and is used almost exclusively in computing.
definition source: http://edamontology.org/topic_3473
imported from: edamontology.org
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
comment: http://edamontology.org
coarse classification: plan specification

database [ita]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A Database is a System for describing, storing and retrieving large amounts of data.
Contributor: ITA
language: English
label: Datenbank @de
coarse classification: material entity

database [ncti]
type: Class
subclass of: material entity
has curation status: uncurated
definition: An information set with a regular structure. Although it can be applied to any set of information the term was invented to refer to computerized data, and is used almost exclusively in computing.
definition source: http://purl.obolibrary.org/obo/NCIT_C15426
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: material entity

deep learning [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Deep learning is a class of machine learning algorithms that uses multiple layers to progressively extract higher-level features from the raw input. There is no universally agreed-upon threshold of depth that divides shallow learning from deep learning, but most researchers agree that deep learning involves CAP depth higher than 2. The CAP (credit assignment path) is the chain of transformations from input to output. CAPs describe potentially causal connections between input and output. For simple neural networks (feedforward neural networks) this treshhold is reached with at least two hidden layers.
language: English
label: Deep Learning @de
coarse classification: plan specification

deep learning [ncti]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A subset of machine learning that is part of the broader family of machine learning methodologies based on artificial neural networks. A deep neural network has multiple layers between input and output layers to progressively extract higher level features from the raw input. (After DeepAI Machine Learning Glossary and Terms) [ NCI ]
definition source: http://purl.obolibrary.org/obo/NCIT_C176258
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

input layer [ita]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The input layer of a neural network is composed of artificial input neurons, and brings the initial data into the system for further processing by subsequent layers of artificial neurons. The input layer is the very beginning of the workflow for the artificial neural network.
language: English
label: Eingangsvektor @de
coarse classification: information content entity

elastomers [ita]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Elastomers are dimensionally stable but elastically deformable plastics. They are producest by vulcanization of rubber.
language: English
label: Elastomere @de
coarse classification: material entity

output layer [ita]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The output layer in an artificial neural network is the last layer of neurons that produces given outputs for the program.
language: English
label: Ergebnisvektor @de
coarse classification: information content entity

extrusion [ita]
type: Class
subclass of: process
has curation status: uncurated
definition: Extrusion is a process used to create objects of a fixed cross-sectional profile by pushing material through a die of the desired cross-section.
language: English
label: Extrusion @de
coarse classification: process

extrusion [rex]
type: Class
subclass of: process
has curation status: uncurated
definition: A transformation in which an atom or group Y connected to two other atoms or groups X and Z is lost from a molecule, leading to a product in which X is bonded to Z, e.g. X-Y-Z --> X-Z + Y.
definition source: http://purl.obolibrary.org/obo/REX_0000100
imported from: rex.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/rex.owl
coarse classification: process

extrusion [chmo]
type: Class
subclass of: process
has curation status: uncurated
definition: A process used to create objects of a fixed cross-sectional profile by forcing or drawing a material through a die.
definition source: http://purl.obolibrary.org/obo/CHMO_0001613
imported from: chmo.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/chmo.owl
coarse classification: process

hidden layer [ita]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: In neural networks, a hidden layer is located between the input and output of the algorithm, in which the function applies weights to the inputs and directs them through an activation function as the output. In short, the hidden layers perform nonlinear transformations of the inputs entered into the network.
language: English
label: Hidden-Layer @de
coarse classification: information content entity

Industrie 4.0 [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Industrie 4.0 is the intelligent networking of machines and processes in the industrial environment, with the help of information and communication technology and thus digitization of the industrial production.
language: English
label: Industrie 4.0 @de
coarse classification: plan specification

rubber [ita]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Rubber is an elastic substance made either from the juice of particular tropical trees or artificially. It is raw material for car tires and other technical products.
language: English
label: Kautschuk @de
coarse classification: material entity

Artificial Intelligence (AI) [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Artifical intelligence is a branch of computer science dealing with the automation of intelligent behavior. Can be used in technical areas as methods of machine learning.
language: English
label: Künstliche Intelligenz (KI) @de
coarse classification: plan specification

Artificial Intelligence (AI) [ncti]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Artificial intelligence is the branch of computer science that deals with writing computer programs that can solve problems creatively.
definition source: http://purl.obolibrary.org/obo/NCIT_C16309
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

machine learning [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Machine learning is a sub-area of ​​artificial intelligence that deals with artificial systems that adapt their actions to external conditions so that their output is improved according to defined standards. For this purpose, algorithms build a model based on training data. The algorithms does not learn to memorize, but uses patterns and laws, so the systems can also process unknown data. The learning algorithms are divided into supervised learning, unsupervised learning and reinforcement learning.
language: English
label: maschinelles Lernen @de
coarse classification: plan specification

machine learning [ncti]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A computing system (inspired by biological neural networks) that learns (progressively improves its ability) to do tasks by considering examples without task-specific programming. (After DeepAI Machine Learning Glossary and Terms)
definition source: http://purl.obolibrary.org/obo/NCIT_C176231
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

machine learning [obi]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A planned process in which statistical techniques are used to give computers the ability to learn about patterns in data, without being explicitly programmed. Learning is defined in this case as progressively improving performance on a specific task.
definition source: http://purl.obolibrary.org/obo/OBI_0002587
imported from: obi.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/obi.owl
coarse classification: plan specification

machine learning [edam]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A topic concerning the application of artificial intelligence methods to algorithms, in order to create methods that can learn from data in order to generate an ouput, rather than relying on explicitly encoded information only.
definition source: http://edamontology.org/topic_3474
imported from: edamontology.org
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://edamontology.org
coarse classification: plan specification

microcontroller [ita]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Microcontrollers are compact integrated circuits designed to govern a specific operation in an embedded system. Typically a microcontroller includes a processor, memory and input/output peripherals on a single chip.
language: English
label: Mikrocontroller @de
coarse classification: material entity

mixing [ita]
type: Class
subclass of: process
has curation status: uncurated
definition: Mixing is the first of the three areas of an extrusion line, where the input material is homogenized and mixed. This occurs within a screw element through shearing and mixing of the input material.
language: English
label: Mischen @de
coarse classification: process

mixing [chmo]
type: Class
subclass of: process
has curation status: uncurated
definition: The combining of components, particles or layers into a more homogeneous state. The mixing may be achieved manually or mechanically by shifting the material with stirrers or pumps or by revolving or shaking the container. The process μst not permit segregation of particles of different size or properties. Homogeneity may be considered to have been achieved in a practical sense when the sampling error of the processed portion is negligible compared to the total error of the measurement system.
definition source: http://purl.obolibrary.org/obo/CHMO_0001685
imported from: chmo.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/chmo.owl
coarse classification: process

mixing [ncti]
type: Class
subclass of: process
has curation status: uncurated
definition: To bring or combine together or with something else; add as an additional element or part.
definition source: http://purl.obolibrary.org/obo/NCIT_C64925
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: process

pattern recognition [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Pattern recognition is the automated recognition of patterns and regularities in data. Pattern recognition has its origins in statistics and engineering; some modern approches include the use of machine learning, due to the increased availability of big data and a new abundance of processing power.
language: English
label: Mustererkennung @de
coarse classification: plan specification

pattern recognition [ncti]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A branch of artificial intelligence concerned with the identification of visual or audio patterns by computers.For the computer to recognize the patterns, the patterns must be converted into digital signals and compared with patterns already stored in memory.Some uses of this technology are in character recognition, voice recognition, handwriting recognition, and robotics. (High-Tech Dictionary) [ NCI ]
definition source: http://purl.obolibrary.org/obo/NCIT_C16961
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

neural network [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Artificial neural networks (ANNs) are based on a reduced set of concepts from biological neural systems. It is composed of different Layeres, an input layer, one or more hidden layers and an output layer. Each layer consists of several artificial neurons. The connections of the biological neuron are modeled in artificial neural networks as weights between the artificial neurons. A positive weight reflects an excitatory connection, while negative values mean inhibitory connections. An activation function controls the amplitude of the output. They can be used to model complex relationships between inputs and outputs or to find patterns in data. Thereby ANNs can be trained by machine learning techniques to approximate a function, when the complexity of the data or task makes the design of such function by hand impractical. Other tasks in which ANNs can be trained are classification, including pattern recognition, clustering and Data processing, including clustering.
language: English
label: neuronales Netz @de
coarse classification: plan specification

neural network [ncti]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A computer algorithm to solve non-linear optimization problems. The algorithm was derived in analogy to the way the densely interconnected, parallel structure of the brain processes information.
definition source: http://purl.obolibrary.org/obo/NCIT_C17429
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

online characterisation [ita]
type: Class
subclass of: process
has curation status: uncurated
definition: Online characterisation is the characterization of the material properties during the process and on the real process line in order to be able to react to fluctuations during production.
language: English
label: Online-Charakterisierung @de
coarse classification: process

online optimization [ita]
type: Class
subclass of: process
has curation status: uncurated
definition: In online optimization decisions are made directly in the real process section and without knowledge of future results. Also often the data of the problem instance is not complete.
language: English
label: Online-Optimierung @de
coarse classification: process

optimization [ita]
type: Class
subclass of: process
has curation status: uncurated
definition: Optimizers are algorithms or methods used to solve optimization problems by minimize an error function (loss function) or to maximize the efficiency of production. Optimizers are mathematical functions which are dependent on model's learnable parameters i.e Weights & Biases.
language: English
label: Optimierungsmethoden @de
coarse classification: process

optimization [ncti]
type: Class
subclass of: process
has curation status: uncurated
definition: An activity that attempts to find the best solution to a problem.
definition source: http://purl.obolibrary.org/obo/NCIT_C78561
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: process

Production-in-the-Loop [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Production-in-the-Loop describes a method, in which information from the production process is continuously recorded and the process is adapted to the changing framework conditions on the basis of this information.
language: English
label: Production-in-the-loop @de
coarse classification: plan specification

regression analysis [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Regression analysis consists of a set of machine learning methods that allow us to predict a continuous outcome variable (y) based on the value of one or multiple predictor variables (x). Regression is a supervised learning technique, in which Algorithems build a mathematical Modell or equation that defines y as a funktion of x.
language: English
label: Regressionsanalyse @de
coarse classification: plan specification

simulation environment [ita]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A simulation environment is a virtual environment that maps/models the real process. A simulation model thus makes it possible to train control tasks using learning algorithms offline, i.e. not on the real system but on the computer. Neural networks can be used to create such model.
language: English
label: Simulationsumgebung @de
coarse classification: material entity

test dataset [ita]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The test dataset is a subset of the dataset that is held back from training the model and given to the learning algorithm to test the trained model. Typically it consists of 20% to 30% of the original dataset. It is the sample of data used to provide an unbiased evaluation of a final model fit on the training dataset.
language: English
label: Test-Dataset @de
coarse classification: information content entity

train dataset [ita]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The train dataset is a subset of the dataset that is given to the learning algorithm to train a model. Typically it consists of 70% to 80% of the original dataset. It is the sample of data used to fit the model.
language: English
label: Train-Dataset @de
coarse classification: information content entity

supervised learning [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Supervised learning is the machine learning task of learning a function that maps an input to an output based on example input-output pairs. It infers a function from labeled training data consisting of a set of training examples. In supervised learning, each example is a pair consisting of an input object (typically a vector) and a desired output value (target).
language: English
label: überwachtes Lernen @de
coarse classification: plan specification

supervised learning [obi]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A machine learning process using a function that maps an input to an output based on example input-output pairs. It infers a function from labeled training data consisting of a set of training examples.
alternative term: supervised machine learning
definition source: http://purl.obolibrary.org/obo/OBI_0002588
imported from: obi.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/obi.owl
coarse classification: plan specification

unsupervised learning [ita]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Unsupervised learning is a type of algorithm that learns patterns from untagged data. The hope is that through mimicry, which is an important mode of learning in people, the machine is forced to build a compact internal representation of its world and then generate imaginative content from it. Unsupervised methods exhibit self-organization that captures patterns as probability densities or a combination of neural feature preferences.
language: English
label: unüberwachtes Lernen @de
coarse classification: plan specification

unsupervised learning [obi]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A machine learning process that infers a function describing the structure of "unlabeled" data (i.e. data that has not been classified or categorized).
alternative term: unsupervised machine learning
definition source: http://purl.obolibrary.org/obo/OBI_0002589
imported from: obi.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/obi.owl
coarse classification: plan specification

validation dataset [ita]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The validation dataset is the sample of data used to provide an unbiased evaluation of a model fit on the training dataset while tuning model hyperparameters. The evaluation becomes more biased as skill on the validation dataset is incorporated into the model configuration.
language: English
label: Validation-Dataset @de
coarse classification: information content entity

validation [ita]
type: Class
subclass of: process
has curation status: uncurated
definition: Validation data is to "validate" that your neural network hasn't rather memorized your training data and has thus actually learned some meaningful aspects of the data so that the model can be later used (generalized) to unseen, held-out "test dataset".
language: English
label: Validierung @de
coarse classification: process

validation [ncti]
type: Class
subclass of: process
has curation status: uncurated
definition: The act of validating; finding or testing the truth of something.
definition source: http://purl.obolibrary.org/obo/NCIT_C16237
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: process

validation [obi]
type: Class
subclass of: process
has curation status: uncurated
definition: a planned process with objective to check that the accuracy or the quality of a claim or prediction satisfies some criteria and which is assessed by comparing with independent results
definition source: http://purl.obolibrary.org/obo/OBI_0302911
imported from: obi.owl
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://purl.obolibrary.org/obo/obi.owl
coarse classification: process

validation [edam]
type: Class
subclass of: process
has curation status: uncurated
definition: Validate some data.
definition source: http://edamontology.org/operation_2428
imported from: edamontology.org
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://edamontology.org
coarse classification: process

rolling [ita]
type: Class
subclass of: process
has curation status: uncurated
definition: Rolling is the second of the three areas of the extrusion line. Where the material is homogenised.
language: English
label: Walzen @de
coarse classification: process

twin screw extruder [ita]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Twin screw extruders have two screws, which have more shear and mixing capability than the single screw in a singel screw extruder. Depending on the direction of rotation of the screws, a distinction is made between counter-rotating and co-rotating twin-screw extruders.
language: English
label: Zweischneckenextruder @de
coarse classification: material entity

Mixing temperature [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control variable that specifies at which temperature mixing takes place.
language: English
label: Mischungstemperatur @de
coarse classification: quality

Stamp pressure [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Rücksprache DIK
language: English
label: Stemepeldruck @de
coarse classification: quality

rotation speed (Mixer) [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control value that specifies at which speed mixing takes place
language: English
label: Drehzahl (Mischer) @de
coarse classification: quality

Mixing time [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control value that specifies how long mixing takes place
language: English
label: Mischzeit @de
coarse classification: quality

Torque (mixer) [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Measured variable that indicates how high the torque is during mixing.
language: English
label: Drehmoment (Mischer) @de
coarse classification: quality

Torque (mixer) [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: Torque is the effectiveness of a force to produce rotation about an axis, measured by the product of the force and the perpendicular distance from the line of action of the force to the axis.
definition source: http://www.ontology-of-units-of-measure.org/resource/om-2/Torque
imported from: om-2
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
comment: http://www.ontology-of-units-of-measure.org/resource/om-2
coarse classification: quality

Screw speed [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control variable that indicates how high the speed of the screw is during extrusion.
language: English
label: Schneckendrezahl @de
coarse classification: quality

Screw torque [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Measured variable that indicates how high the torque of the screw is during extrusion.
language: English
label: Schneckendrehmoment @de
coarse classification: quality

Tempering screw [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control variable that indicates how high the temperature of the screw is during extrusion.
language: English
label: Temperierung Schnecke @de
coarse classification: quality

Tempering Feed roller [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control variable that indicates how high the temperature of the feed roller is during extrusion.
language: English
label: Temperierung Speisewalze @de
coarse classification: quality

Tempering cylinder [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control variable that indicates how high the temperature of the cylinder is during extrusion.
language: English
label: Temperierung Zylinder @de
coarse classification: quality

Cylinder pressure [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Measured variable that indicates how high the pressure in the cylinder is during extrusion.
language: English
label: Zylinderdruck @de
coarse classification: quality

Tempering Tool [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Control variable that indicates how high the temperature of the tool is during extrusion.
language: English
label: Temperiung Werkzeug @de
coarse classification: quality

Tool pressure [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Measured variable that indicates how high the pressure in the tool is during extrusion.
language: English
label: Werkzeugdruck @de
coarse classification: quality

Near-surface mass temperature in the tool [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Measured variable that indicates what the temperature is at the surface of the material.
language: English
label: Oberflächennahe Massentemperatur im Werkzeug @de
coarse classification: quality

Radial temperature profile of the mixture in the screw channel [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: Measured variable that indicates how the temperature is distributed radially over the screw channel.
language: English
label: Radiales Temperaturprofil der Mischung im Schneckenkanal @de
coarse classification: quality

Outlet surface [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: System parameter that indicates how large the outlet surface of the rubber is.
language: English
label: Austrittsfläche @de
coarse classification: quality

Throughput [ita]
type: Class
subclass of: quality
has curation status: uncurated
definition: The throughput indicates how many kilograms of rubber are extruded in a given unit of time.
language: English
label: Durchsatz @de
coarse classification: quality

collection of material entities [hsh]
type: Class
subclass of: material entity
definition: A class of units in the system under study (e.g, machines, spare parts)
coarse classification: material entity

factor [hsh]
type: Class
subclass of: information content entity
definition: A circumstance, fact, or influence that contributes to the costs associated with an entity (e.g., wages, number)
label: faktor [hsh] @de
coarse classification: information content entity

factor [ncti]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Anything that contributes causally to a result.
definition source: http://purl.obolibrary.org/obo/NCIT_C25506
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: faktor [ncti] @de
coarse classification: information content entity

factor [proco]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A data item that is a member of a minimal set of independent variables that can be used to model the dependent reponses in a set of related experiments.
definition source: http://purl.obolibrary.org/obo/PROCO_0000005
imported from: proco.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: faktor [proco] @de
coarse classification: information content entity

factor [allotrope]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A multiplicand in a mathematical product expression. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0000924>
imported from: ontologies
language: English
last update on: 15.08.2022
comment: skos:definition
label: faktor [allotrope] @de
coarse classification: information content entity

cost [hsh]
type: Class
subclass of: information content entity
definition: Cumulative expression for the value of all costs groups within the system under study
label: kosten [hsh] @de
coarse classification: information content entity

cost [ncti]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The amount paid, charged, or engaged to be paid, for purchasing goods, services and financial instruments.
definition source: http://purl.obolibrary.org/obo/NCIT_C69088
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: kosten [ncti] @de
coarse classification: information content entity

cost group [hsh]
type: Class
subclass of: information content entity
definition: Cumulative expression for the value of overarching entity groups (e.g., human ressource, maintenance) within the system under study
label: kostengruppe [hsh] @de
coarse classification: information content entity

human ressource cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the human ressource cost group and the associated factors
label: personalkosten [hsh] @de
coarse classification: information content entity

maintenance cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the maintenance cost group and the associated factors
label: wartungskosten [hsh] @de
coarse classification: information content entity

energy cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the energy cost group and the associated factors
label: energiekosten [hsh] @de
coarse classification: information content entity

material cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the material cost group and the associated factors
label: materialkosten [hsh] @de
coarse classification: information content entity

storage cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the storage cost group and the associated factors
label: lagerhaltungskosten [hsh] @de
coarse classification: information content entity

production cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the production cost group and the associated factors
label: produktionskosten [hsh] @de
coarse classification: information content entity

investment cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the investment cost group and the associated factors
label: investitionskosten [hsh] @de
coarse classification: information content entity

waste management cost [hsh]
type: Class
subclass of: information content entity
definition: A cost group for all cost values occuring from entity sub-groups in the waste management cost group and the associated factors
label: abfallmanagementkosten [hsh] @de
coarse classification: information content entity

turnover [hsh]
type: Class
subclass of: information content entity
definition: A cost group for the total sales value generated in a time period X by the system under investigation
label: umsatz [hsh] @de
coarse classification: information content entity

machine [hsh]
type: Class
subclass of: material entity
definition: An apparatus using mechanical power and having several parts, each with a definite function and together performing a particular task, required for operations in the system under investigation. Constitutes an entity in the maintenance cost, energy cost, production cost, investment cost and turnover cost group.
label: maschine [hsh] @de
coarse classification: material entity

condition [hsh]
type: Class
subclass of: quality
definition: The state of an unit within an individual entity sub-group with regard to its working order (e.g., good, defective, not working).
label: zustand [hsh] @de
coarse classification: quality

condition [ncti]
type: Class
subclass of: quality
has curation status: uncurated
definition: A state of being, such as a state of health.
definition source: http://purl.obolibrary.org/obo/NCIT_C25457
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: zustand [ncti] @de
coarse classification: quality

condition [shacl]
type: Class
subclass of: quality
has curation status: uncurated
definition: The shapes that the focus nodes need to conform to before a rule is executed on them.
definition source: http://www.w3.org/ns/shacl#condition
imported from: shacl#
Contributor: Luis Ramos
language: English
last update on: 22.08.2023
creation date: 22.08.2023
label: zustand [shacl] @de
coarse classification: quality

condition [ssn]
type: Class
subclass of: quality
has curation status: uncurated
definition: Used to specify ranges for qualities that act as conditions on a system/sensor's operation. For example, wind speed of 10-60m/s may be used as the condition on a SystemProperty, for example, to state that a sensor has a particular accuracy in that
definition source: http://www.w3.org/ns/ssn/systems/Condition
imported from: systems
Contributor: Luis Ramos
language: English
last update on: 22.08.2024
creation date: 22.08.2024
label: zustand [ssn] @de
coarse classification: quality

raw material [hsh]
type: Class
subclass of: material entity
definition: The basic materials from which a finished product is made in the system under investigation. Constitutes an entity in the material cost and waste management cost group.
label: rohmaterial [hsh] @de
coarse classification: material entity

semi-finished product [hsh]
type: Class
subclass of: material entity
definition: Processed raw materials that are not used for final consumption but as input for the production of finished goods in the system under investigation. Constitutes an entity in the material cost and waste management cost group.
label: halbfabrikat [hsh] @de
coarse classification: material entity

finished product [hsh]
type: Class
subclass of: material entity
definition: The product that emerges at the end of the production process of the system under study. Constitutes an entity in the material cost, production cost, and waste management cost group.
label: endprodukt [hsh] @de
coarse classification: material entity

spare parts [hsh]
type: Class
subclass of: material entity
definition: A duplicate part to replace a lost or damaged part of a machine entity unit in the system under investigation. Constitutes an entity sub-group of the wear parts entity.
label: ersatzteil [hsh] @de
coarse classification: material entity

wear parts [hsh]
type: Class
subclass of: material entity
definition: Parts pf a machine entity unit that are bound to wear out with repetitive use and will require periodic repair or replacement based on maintenance interval in the system under investigation. Constitutes an entity of the maintenance cost and material cost group.
label: verschleißteil [hsh] @de
coarse classification: material entity

packaging [hsh]
type: Class
subclass of: material entity
definition: Materials used to wrap or protect raw materials, semi-finished products, and finished products.
label: verpackung [hsh] @de
coarse classification: material entity

operator [hsh]
type: Class
subclass of: role
definition: A person who operates a machine entity unit in the system under investigation. Constitutes an entity of the human resource and the production cost group.
coarse classification: role

operator [ncti]
type: Class
subclass of: role
has curation status: uncurated
definition: A person that operates some apparatus or machine.
definition source: http://purl.obolibrary.org/obo/NCIT_C48036
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
coarse classification: role

supervisor [hsh]
type: Class
subclass of: role
definition: A person who supervises and coordinates the work of employees who set up and operate machine entity units in the system under investigation. Constitutes an entity of the human ressource and the production cost group.
coarse classification: role

supervisor [ncti]
type: Class
subclass of: role
has curation status: uncurated
definition: An individual who is responsible for managing or operating a business, organization, team or department.
definition source: http://purl.obolibrary.org/obo/NCIT_C134832
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
coarse classification: role

supervisor [m4i]
type: Class
subclass of: role
has curation status: uncurated
definition: Designated administrator over one or more groups/teams working to produce a resource, or over one or more steps of a development process
definition source: http://w3id.org/nfdi4ing/metadata4ing#Supervisor
imported from: metadata4ing#
Contributor: Luis Ramos
language: English
last update on: 22.08.2023
creation date: 22.08.2023
coarse classification: role

operational assistant [hsh]
type: Class
subclass of: role
definition: A person who supports an operator in the system under investigation. Constitutes an entity of the human ressource and the production cost group.
label: hilfskraft [hsh] @de
coarse classification: role

warehouse clerk [hsh]
type: Class
subclass of: role
definition: A person who handles a company's incoming and outgoing raw materials, semi-finished prodcuts as well as finished products, and who manages stocks in the system under investigation. Constitutes an entity of the human ressource and the storage cost group.
label: lagerist [hsh] @de
coarse classification: role

quality inspector [hsh]
type: Class
subclass of: role
definition: A person who monitors the quality of incoming and outgoing products or materials in the system under investigation. Constitutes an entity of the human ressource and the production cost group.
label: qualitätsprüfer [hsh] @de
coarse classification: role

conveyor vehicle [hsh]
type: Class
subclass of: material entity
definition: A mode of transport that is employed to transport raw materials, semi-finished goods and finished goods within the system under investigation.
label: fördermittel [hsh] @de
coarse classification: material entity

mean time to failure [hsh]
type: Class
subclass of: information content entity
definition: A maintenance metric that measures the average amount of time a non-repairable asset operates before it fails in the system under investigation. Constitutes a factor of the maintenance cost group.
label: mittlere zeit bis zum ausfall [hsh] @de
coarse classification: information content entity

mean time to repair [hsh]
type: Class
subclass of: information content entity
definition: A maintenance metric that measures the average time required to troubleshoot and repair failed equipment. Constitutes a factor of the maintenance cost group.
label: mittlere reperaturdauer [hsh] @de
coarse classification: information content entity

maintenance interval [hsh]
type: Class
subclass of: information content entity
definition: The schedule for all anticipated maintenance activities regarding machine entites within the system under investigation. Constitutes a factor of the maintenance cost group.
label: wartungsintevall [hsh] @de
coarse classification: information content entity

maintenance interval [iirds]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Type of planning time: Fixed time interval for the scheduled maintenance of a technical system or its parts.
definition source: http://iirds.tekom.de/iirds#MaintenanceInterval
imported from: iirds#
language: English
last update on: 15.08.2022
comment: rdfs:comment
label: wartungsintevall @de
coarse classification: information content entity

maintenance duration [hsh]
type: Class
subclass of: information content entity
definition: The averafe time that is required to conduct scheduled maintenance activities for a machine entity unit. Constitutes a factor of the maintenance cost group.
label: wartungsdauer [hsh] @de
coarse classification: information content entity

energy consumption [hsh]
type: Class
subclass of: information content entity
definition: The amount of electricity (kw/h) that is consumed by all entities in the system under investigation. Constitutes a factor of the energy cost, storage cost and production cost group.
label: stromverbrauch [hsh] @de
coarse classification: information content entity

unit cost [hsh]
type: Class
subclass of: information content entity
definition: The expenditure that incurs for acquiring a single unit of an entity sub-group in the system under investigation. Constitutes a factor of the maintenance cost, material cost, and storage cost group.
label: stückkosten [hsh] @de
coarse classification: information content entity

building [hsh]
type: Class
subclass of: material entity
definition: The facility where the operations of the system under investigation are conducted. Constitutes an entity of the energy cost group.
comment: add location as top-level category
label: gebäude [hsh] @de
coarse classification: material entity

building [bwmd]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Any kind of building (e.g. an institute building)
definition source: https://www.materials.fraunhofer.de/ontologies/BWMD_ontology/mid#BWMD_00027
imported from: ontologies
Contributor: Luis Ramos
language: English
last update on: 16.08.2022
creation date: 16.08.2022
comment: rdfs:comment
label: gebäude @de
coarse classification: material entity

building [allotrope]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A building (site) is a site located in a structure with a roof and walls. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/spatial#AFSP_0000003
imported from: purl.allotrope.org
Contributor: Luis Ramos
language: English
last update on: 16.08.2022
creation date: 16.08.2022
comment: skos:definition
label: gebäude @de
coarse classification: material entity

building [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A structure that has a roof and walls and stands more or less permanently in one place.
definition source: http://purl.obolibrary.org/obo/NCIT_C80231
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: gebäude @de
coarse classification: material entity

building [envo]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A permanent walled and roofed construction.
definition source: http://purl.obolibrary.org/obo/ENVO_00000073
imported from: envo.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: gebäude @de
coarse classification: material entity

throughput [hsh]
type: Class
subclass of: information content entity
definition: The amount of raw materials, semi-finisehd products or finished products passing through a machine entity in the time X in the system under investigation.
label: durchsatz [hsh] @de
coarse classification: information content entity

indirect cost [hsh]
type: Class
subclass of: information content entity
definition: All costs that are derived from costs groups encompassing overhead charges or subsidiary work.
label: indirekte kosten [hsh] @de
coarse classification: information content entity

direct cost [hsh]
type: Class
subclass of: information content entity
definition: All costs that are derived from costs groups that are directly related to the production of finished goods in the system under study.
label: direkte kosten [hsh] @de
coarse classification: information content entity

direct cost
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Costs that can be identified with a particular project or program.
definition source: http://purl.obolibrary.org/obo/NCIT_C19579
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: direkte kosten @de
coarse classification: information content entity

unit [hsh]
type: Class
subclass of: information content entity
definition: A single system element (e.g., extruder 1, tool 1) within an entity sub-group in the system under investigation.
label: einheit [hsh] @de
coarse classification: material entity

unit [ncti]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A property representing the unit of measure in which a nutrient or food component is typically expressed, ex., gram (g), minigram (mg), microgram (mcg), joule, or kilojoule.
definition source: http://purl.obolibrary.org/obo/NCIT_P355
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2018
creation date: 22.08.2018
label: einheit [ncti] @de
coarse classification: material entity

unit [ncti]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The property used in conjunction with a nutrient or food component, typically expressed in gram (g), milligram (mg), microgram (mcg), joule, or kilojoule.
definition source: http://purl.obolibrary.org/obo/NCIT_C68553
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2019
creation date: 22.08.2019
label: einheit [ncti] @de
coarse classification: material entity

unit [ncti]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A single undivided thing occurring in the composition of something else.
definition source: http://purl.obolibrary.org/obo/NCIT_C44278
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2020
creation date: 22.08.2020
label: einheit [ncti] @de
coarse classification: material entity

unit [sd]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Class designed to distinguish the different types of units that are available in variables from datasets or parameters
definition source: https://w3id.org/okn/o/sd#Unit
imported from: sd
Contributor: Luis Ramos
language: English
last update on: 22.08.2021
creation date: 22.08.2021
label: einheit [sd] @de
coarse classification: material entity

unit [uo]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: "A unit of measurement is a standardized quantity of a physical quality." [Wikipedia:Wikipedia]
definition source: http://purl.obolibrary.org/obo/UO_0000000
imported from: uo.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: einheit [uo] @de
coarse classification: material entity

extruder [hsh]
type: Class
subclass of: material entity
definition: A machine that pushes unvulcanized rubber compounds through an extrusion die under pressure. Constitutes an entity sub-group of the machine entity.
coarse classification: material entity

banbury mixer [hsh]
type: Class
subclass of: material entity
definition: A machine that mixes polymers and additives in the manufacture of plastic and rubber products. Constitutes an entity sub-group of the machine entity.
label: knetmaschine [hsh] @de
coarse classification: material entity

tire building machine [hsh]
type: Class
subclass of: material entity
definition: A machine that assembles assembles all components and semi-finished products to produce a tyre. Constitutes an entity sub-group of the machine entity.
label: reifenproduktionsmaschine [hsh] @de
coarse classification: material entity

cutter [hsh]
type: Class
subclass of: material entity
definition: A pneumtaic machine that cuts rubber materials. Constitutes an entity sub-group of the machine entity.
label: schneidemaschine [hsh] @de
coarse classification: material entity

calandar [hsh]
type: Class
subclass of: material entity
definition: A machine that combines a series of hard pressure rollers used to finish or smooth a sheet of rubber material. Constitutes an entity sub-group of the machine entity.
label: kalandar [hsh] @de
coarse classification: material entity

storage robot [hsh]
type: Class
subclass of: material entity
definition: An automated system that transports good to, within and from storage areas. Constitutes an entity sub-group of the machine entity.
label: lagerroboter [hsh] @de
coarse classification: material entity

gantry crane [hsh]
type: Class
subclass of: material entity
definition: An overhead crane with a girder configuration supported by freestanding legs that move on wheels to transport goods. Constitutes an entity sub-group of the machine entity.
label: portalkran [hsh] @de
coarse classification: material entity

uniformity grading machine [hsh]
type: Class
subclass of: material entity
definition: A machine that is measures the tire uniformity for complete vehicle wheels and determines the radial and lateral force fluctuations of the rolling wheel. Constitutes an entity sub-group of the machine entity.
label: gleichförmigkeitsmessautomat [hsh] @de
coarse classification: material entity

forklift [hsh]
type: Class
subclass of: material entity
definition: A powered industrial truck used to lift and move materials over short distances. Constitutes an entity sub-group of the conveyor vehicle entity.
label: gabelstapler [hsh] @de
coarse classification: material entity

conveyor [hsh]
type: Class
subclass of: material entity
definition: A continuous moving strip or surface that is used for transporting objects between different destinations. Constitutes an entity sub-group of the conveyor vehicle entity.
label: fördertechnik [hsh] @de
coarse classification: material entity

lift truck [hsh]
type: Class
subclass of: material entity
definition: A small truck for lifting and transporting loads. Constitutes an entity sub-group of the conveyor vehicle entity.
label: hubwagen [hsh] @de
coarse classification: material entity

tools [hsh]
type: Class
subclass of: material entity
definition: An object shaped for repair and installation purposes, with the help of which something is processed or manufactured.Constitutes an entity sub-group of the wear parts entity.
label: wekzeuge [hsh] @de
coarse classification: material entity

small parts [hsh]
type: Class
subclass of: material entity
definition: A set of small wear parts required to maintain and repair a machine entity. Constitutes an entity sub-group of the wear parts entity.
label: kleinteile [hsh] @de
coarse classification: material entity

whole components [hsh]
type: Class
subclass of: material entity
definition: Components required to maintain and repair a machine entity. Constitutes an entity sub-group of the wear parts entity.
label: ganze komponenten [hsh] @de
coarse classification: material entity

lighting [hsh]
type: Class
subclass of: material entity
definition: Equipment that is employed for producing light in the system under investigation. Constitutes an entity sub-group of the building entity.
label: beleuchtung [hsh] @de
coarse classification: material entity

air conditioning [hsh]
type: Class
subclass of: material entity
definition: Equipment that is employed for cooling and heating in the system under investigation. Constitutes an entity sub-group of the building entity.
label: klimatisierung [hsh] @de
coarse classification: material entity

office equipment [hsh]
type: Class
subclass of: material entity
definition: Equipment that is employed for managerial purposes in the system under investigation.
label: büroausstattung [hsh] @de
coarse classification: material entity

narural rubber [hsh]
type: Class
subclass of: material entity
definition: An elastic material obtained from the latex sap of trees. Constitutes an entity sub-group of the raw material entity.
label: naturkautschuk [hsh] @de
coarse classification: material entity

narural rubber [ncti]
type: Class
subclass of: material entity
has curation status: uncurated
definition: The natural extract of tropical rubber plants.
definition source: http://purl.obolibrary.org/obo/NCIT_C106043
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
label: naturkautschuk [ncti] @de
coarse classification: material entity

synthetic rubber [hsh]
type: Class
subclass of: material entity
definition: Any of several substances similar to natural rubber in properties and uses, produced synthetically. Constitutes an entity sub-group of the raw material entity.
label: synthetikkautschuk [hsh] @de
coarse classification: material entity

filling material [hsh]
type: Class
subclass of: material entity
definition: Material that is required to manipulate the properties of rubber products. Constitutes an entity sub-group of the raw material entity.
label: füllstoffe [hsh] @de
coarse classification: material entity

reinforcing materials [hsh]
type: Class
subclass of: material entity
definition: Material that is used to support the structure of rubber based products (e.g., steel cords). Constitutes an entity sub-group of the raw material entity.
label: verstärkungsmaterialien [hsh] @de
coarse classification: material entity

plasticizer [hsh]
type: Class
subclass of: material entity
definition: A substance added to a synthetic resin to produce or promote plasticity and flexibility and to reduce brittleness. Constitutes an entity sub-group of the raw material entity.
label: weichmacher [hsh] @de
coarse classification: material entity

plasticizer [ncti]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A substance added to plastics or other materials to make or keep them soft or pliable.
definition source: http://purl.obolibrary.org/obo/NCIT_C55826
imported from: ncit.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
comment: plasticiser
label: weichmacher [ncti] @de
coarse classification: material entity

plasticizer [chebi]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Any compound that is used as an additive to increase the plasticity or fluidity of a substance, particularly but not exclusively to synthetic polymers.
definition source: http://purl.obolibrary.org/obo/CHEBI_79056
imported from: chebi.owl
Contributor: Luis Ramos
language: English
last update on: 22.08.2022
creation date: 22.08.2022
comment: plasticiser
label: weichmacher [chebi] @de
coarse classification: material entity

vulcanization chemicals [hsh]
type: Class
subclass of: material entity
definition: Chemicals added to rubber to alter its physical properties. Constitutes an entity sub-group of the raw material entity.
label: vulkanisationschemikalien [hsh] @de
coarse classification: material entity

other additives [hsh]
type: Class
subclass of: material entity
definition: Additional substances that are employed to product rubber-based products. Constitutes an entity sub-group of the raw material entity.
label: sonstige additive [hsh] @de
coarse classification: material entity

Raman spectroscopy [ifnano]
type: Class
subclass of: plan specification
definition: A non-destructive light scattering technique that provides detailed information about the chemical structure upon the interaction of light with the chemical bonds within a material based on periodic changes of polarizabilities.
definition source: https://www.horiba.com/ind/raman-imaging-and-spectroscopy/
coarse classification: plan specification

Raman spectroscopy [allotrope]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Any type of vibrational spectroscopy where the Raman scattering of monochromatic light, usually from a laser in the visible, near infrared, or near ultraviolet range by a sample is detected. [CHMO]
definition source: http://purl.allotrope.org/ontologies/process#AFP_0000047
language: English
last update on: 17.08.2022
comment: http://purl.allotrope.org/ontologies/
coarse classification: plan specification

Raman spectroscopy [ncit]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Emission of electromagnetic energy with a shorter frequency (longer wavelength) than that of the incident monochromatic light. Arises from the low probability absorption of quanta with a higher energy than that required for a transition: the difference in energy is emitted as a lower frequency (energy) photon. Allows analysis of vibrational and rotational energy levels using visible incident light. [ NCI ]
definition source: http://purl.obolibrary.org/obo/NCIT_C17157
imported from: ncit.owl
language: English
last update on: 18.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

Spectrum [ifnano]
type: Class
subclass of: information content entity
definition: A graph that shows the intensity of radiation at different wavelengths or the response of the atomic or molecular system to different wavelengths of the radiation
definition source: https://chem.libretexts.org/Bookshelves/Physical_and_Theoretical_Chemistry_Textbook_Maps/Book%3A_Quantum_States_of_Atoms_and_Molecules_(Zielinksi_et_al)/01%3A_Spectroscopy#:~:text=A%20spectrum%20is%20a%20graph,different%20wavelengths%20of%20the%20radiation.
coarse classification: information content entity
refers to competence question: IFNANO:01_CQ

Spectrum [allotrope]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A spectrum is a data distribution function of a measured quantity in a spectroscopy against some experimental parameter. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0000068
language: English
last update on: 17.08.2022
comment: http://purl.allotrope.org/ontologies/
coarse classification: information content entity

Spectrum [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: An array of entities, such as light waves or particles, ordered in accordance with the magnitudes of a common physical property, such as wavelength or mass.
definition source: http://purl.obolibrary.org/obo/NCIT_C84383
imported from: ncit.owl
language: English
last update on: 18.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

Raman spectrum [ifnano]
type: Class
subclass of: information content entity
definition: A graph presents a number of peaks, showing the intensity and wavelength position of the Raman scattered light, in which each peak corresponds to a specific molecular bond vibration.
definition source: https://www.horiba.com/ind/raman-imaging-and-spectroscopy/
coarse classification: information content entity

Raman spectrum [allotrope]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A plot of intensity vs. Raman shift (cm-1) obtained by measuring the Raman scattering of monochromatic light from a sample. [CHMO]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0000519
language: English
last update on: 17.08.2022
comment: http://purl.allotrope.org/ontologies/
is defined by: allotrope.org (chmo)
coarse classification: information content entity

FTIR spectroscopy [ifnano]
type: Class
subclass of: plan specification
definition: Fourier transform infrared involves the probing of matter with infrared radiation. It is based on periodic changes in dipole moments caused by molecular vibrations during the absorption of IR radiation and gives spectroscopic fingerprints.
definition source: https://www.hamamatsu.com/eu/en/applications/analytical-equipment/infrared-spectroscopy.html
coarse classification: plan specification

ATR-FTIR [ifnano]
type: Class
subclass of: plan specification
definition: An attenuated total reflection accessory operates by measuring the changes that occur in a totally internally reflected infrared beam when the beam comes into contact with a sample.
definition source: https://cmdis.rpi.edu/sites/default/files/ATR_FTIR.pdf
coarse classification: plan specification

Statistical discrimination [ifnano]
type: Class
subclass of: plan specification
definition: It arises when groups differ statistically in their distributions on characteristics relevant to a given situation.
definition source: https://www.sciencedirect.com/science/article/pii/B0123693985005442
coarse classification: plan specification

Chemometrics [ifnano]
type: Class
subclass of: plan specification
definition: The chemical discipline that uses mathematical and statistical methods, (a) to design or select optimal measurement procedures and experiments, and (b) to provide maximum chemical information by analyzing chemical data.
definition source: https://www.wiley-vch.de/de/fachgebiete/naturwissenschaften/chemometrics-978-3-527-34097-2
coarse classification: plan specification

Raw rubber samples [ifnano]
type: Class
subclass of: material entity
definition: Natural and synthetic rubber materials that are modified and shaped into rubber products through the rubber extrusion process.
definition source: https://www.extrudedrubber.net/
coarse classification: material entity

Correlation [ifnano]
type: Class
subclass of: information content entity
definition: A statistical measure that expresses the extent to which two variables are linearly related (meaning they change together at a constant rate). It’s a common tool for describing simple relationships without making a statement about cause and effect.
definition source: https://www.jmp.com/en_ca/statistics-knowledge-portal/what-is-correlation.html
coarse classification: information content entity

Correlation [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The degree to which two or more quantities or events are linearly associated, a statistical relation between two or more variables such that systematic changes in the value of one variable are accompanied by systematic changes in the others.
definition source: http://purl.obolibrary.org/obo/NCIT_C48834
imported from: ncit.owl
language: English
last update on: 18.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

concentration [ifnano]
type: Class
subclass of: quality
example of usage: The concentration of Zinc in the extrudate is 0.5 g/L.
has curation status: uncurated
definition: A quality of a substance in terms of its amount per unit volume in a mixture.
alternative term: Konzentration
definition source: https://en.wikipedia.org/wiki/Concentration
Contributor: Sven Schwabe (IFNANO)
language: English
last update on: 06.04.2022
creation date: 31.03.2022
has_exact_synonym: conc.
coarse classification: quality
refers to competence question: IFNANO:01_CQ; IFNANO:02_CQ; IFNANO:03_CQ

concentration [bwmd]
type: Class
subclass of: quality
has curation status: uncurated
definition: The quantity kind concentration
definition source: https://www.materials.fraunhofer.de/ontologies/BWMD_ontology/mid#BWMD_00298
imported from: BWMD ontology
language: English
last update on: 17.08.2022
comment: https://www.materials.fraunhofer.de/ontologies/BWMD_ontology
coarse classification: quality

concentration [allotrope]
type: Class
subclass of: quality
has curation status: uncurated
definition: A concentration (datum) is a quantification facet that quantifies a quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0002036
imported from: ontologies
language: English
last update on: 17.08.2022
comment: http://purl.allotrope.org/ontologies/
coarse classification: quality

concentration [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: The quantity of a substance per unit volume or weight; a measure of the amount of substance present in a unit amount of mixture, particularly, the amount of solute dissolved in a solvent. The amounts can be expressed as moles, masses, volumes, or parts.
definition source: http://purl.obolibrary.org/obo/NCIT_C41185
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: quality

concentration [edam]
type: Class
subclass of: quality
has curation status: uncurated
definition: The concentration of a chemical compound.
definition source: http://edamontology.org/data_2140
imported from: edamontology.org
language: English
last update on: 19.08.2022
comment: http://edamontology.org
coarse classification: quality

concentration [chmo]
type: Class
subclass of: quality
has curation status: uncurated
definition: Experimental method output expressing the contribution of one constituent to the composition of a mixture.
definition source: http://purl.obolibrary.org/obo/CHMO_0002820
imported from: chmo.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/chmo.owl
coarse classification: quality

concentration [ecso]
type: Class
subclass of: quality
has curation status: uncurated
definition: the strength of a solution; number of molecules of a substance in a given volume
definition source: http://purl.dataone.org/odo/ECSO_00001120
imported from: ECSO8.owl
language: English
last update on: 19.08.2022
comment: http://purl.dataone.org/odo/ECSO8.owl
coarse classification: quality

extrudate [ifnano]
type: Class
subclass of: material entity
definition: Product of the process of Extrusion
alternative term: Extrudat
definition source: https://en.wikipedia.org/wiki/Extrusionn
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
coarse classification: material entity
refers to competence question: IFNANO:02_CQ; IFNANO:03_CQ

extrusion [ifnano]
type: Class
subclass of: process
definition: Extrusion is a process used to create objects of a fixed cross-sectional profile by pushing material through a die of the desired cross-section.
alternative term: Extrusion
definition source: https://en.wikipedia.org/wiki/Extrusion
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
coarse classification: process

extrusion [rex]
type: Class
subclass of: process
has curation status: uncurated
definition: A transformation in which an atom or group Y connected to two other atoms or groups X and Z is lost from a molecule, leading to a product in which X is bonded to Z, e.g. X-Y-Z --> X-Z + Y.
definition source: http://purl.obolibrary.org/obo/REX_0000100
imported from: rex.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/rex.owl
coarse classification: process

extrusion [chmo]
type: Class
subclass of: process
has curation status: uncurated
definition: A process used to create objects of a fixed cross-sectional profile by forcing or drawing a material through a die.
definition source: http://purl.obolibrary.org/obo/CHMO_0001613
imported from: chmo.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/chmo.owl
coarse classification: process

Laser induced breakdown spectroscopy [ifnano]
type: Class
subclass of: plan specification
definition: Laser induced breakdown spectroscopy is a type of atomic emission spectroscopy which uses a highly energetic laser pulse as the excitation source. The laser is focused to form a plasma, which atomizes and excites samples. The Emission of these excited species is analyzed to identify and quantify the elements contained in the sample.
alternative term: Laserinduzierte Plasmaspektroskopie
definition source: https://en.wikipedia.org/wiki/Laser-induced_breakdown_spectroscopy
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
has_exact_synonym: LIBS
coarse classification: plan specification
refers to competence question: IFNANO:01_CQ; IFNANO:02_CQ; IFNANO:03_CQ

Laser induced breakdown spectroscopy [chmo]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A type of atomic emission spectrometry where a high energy laser pulse is used to generate a plasma which acts as the excitation source.
definition source: http://purl.obolibrary.org/obo/CHMO_0000258
imported from: chmo.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/chmo.owl
coarse classification: plan specification

distribution quality [ifnano]
type: Class
subclass of: quality
definition: A quality of a sample in terms of homogenity, or the distribution of concentration of a specific component in a mixture, in a macroscopic body.
alternative term: Verteilungsgüte; homogenity
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
coarse classification: quality
refers to competence question: IFNANO:02_CQ; IFNANO:03_CQ

peak [ifnano]
type: Class
subclass of: information content entity
definition: In Spectroscopy, peaks are features of a spectrum. A peak comprise a restricted region of a spectrum, which is absorbed or emitted with high intensity.
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
coarse classification: information content entity
refers to competence question: IFNANO:01_CQ

peak [allotrope]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A peak describes a part of a data distribution function at a definite range of the experimental parameter (independent variable) of the distribution function. This definition includes a single data point of the distribution function. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0000413
imported from: ontologies
language: English
last update on: 17.08.2022
comment: http://purl.allotrope.org/ontologies/
coarse classification: information content entity

peak [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The most extreme possible amount or value; the highest point.
definition source: http://purl.obolibrary.org/obo/NCIT_C48054
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

peak [envo]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The summit of a mount.
definition source: http://purl.obolibrary.org/obo/ENVO_00000480
imported from: envo.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/envo.owl
coarse classification: information content entity

peak [ms]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably.
definition source: http://purl.obolibrary.org/obo/MS_1000231
imported from: ms.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ms.owl
coarse classification: information content entity

raw spectrum [ifnano]
type: Class
subclass of: information content entity
definition: Unprocessed data obtained from spectrometric devices
alternative term: Rohspektrum
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
coarse classification: information content entity
refers to competence question: IFNANO:01_CQ

processed spectrum [ifnano]
type: Class
subclass of: information content entity
definition: Result of different mathematical processes conducted on raw Spectra. Processing steps include e.g. normalization and baseline correction
alternative term: bearbeitetes Spektrum; verarbeitetes Spektrum
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
coarse classification: information content entity
refers to competence question: IFNANO:01_CQ

principal component analysis [ifnano]
type: Class
subclass of: plan specification
definition: Principal component analysis (PCA) is the process of computing the principal components and using them to perform a change of basis on the data.
alternative term: Hauptkomponentenanalyse
definition source: https://en.wikipedia.org/wiki/Principal_component_analysis
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
coarse classification: plan specification
refers to competence question: IFNANO:01_CQ

principal component analysis [ncit]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A vector space transform used to reduce the dimensionality in a dataset while retaining those characteristics of the dataset that contribute most to its variance.
definition source: http://purl.obolibrary.org/obo/NCIT_C49291
imported from: ncit.owl
language: English
last update on: 19.08.2023
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

principal component analysis [edam]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A statistical procedure that uses an orthogonal transformation to convert a set of observations of possibly correlated variables into a set of values of linearly uncorrelated variables called principal components.
definition source: http://edamontology.org/operation_3960
imported from: edamontology.org
language: English
last update on: 19.08.2023
comment: http://edamontology.org
coarse classification: plan specification

Photometric Measurement Process [ifnano]
type: Class
subclass of: process
definition: Measurement using photometry
coarse classification: process

Metadata [ifnano]
type: Class
subclass of: information content entity
definition: Metadata are data, which belong to a measurement. They complete the measurment data providing information about the condition under which the measurements have been taken place.
coarse classification: information content entity

Metadata [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Data about data; information that describes another set of data.
definition source: http://purl.obolibrary.org/obo/NCIT_C52095
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

Photometry [ifnano]
type: Class
subclass of: plan specification
definition: Measurement method using visible light
coarse classification: plan specification

Photometry [ncit]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Measurement of the properties of light, especially luminous intensity.
definition source: http://purl.obolibrary.org/obo/NCIT_C65109
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

Colorimetry [ifnano]
type: Class
subclass of: plan specification
definition: Determination concentrations using a color chart
coarse classification: plan specification

Colorimetry [allotrope]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: The determination of the spectral absorbance of a solution. This method is often used to determine the concentration of a chemical in a solution. [CHMO]
definition source: http://purl.allotrope.org/ontologies/process#AFP_0002309
language: English
last update on: 17.08.2022
comment: http://purl.allotrope.org/ontologies/
coarse classification: plan specification

Colorimetry [ncit]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: An assessment used to quantify and describe the colors within the visible spectrum of light.
definition source: http://purl.obolibrary.org/obo/NCIT_C111096
imported from: ontologies
language: English
last update on: 19.08.2022
comment: http://purl.allotrope.org/ontologies/
coarse classification: plan specification

Image data [ifnano]
type: Class
subclass of: information content entity
definition: Digital representation of an image. Images are represented in natural numbers.
coarse classification: information content entity

RGB image data [ifnano]
type: Class
subclass of: information content entity
definition: Digital representation of an image using a natural number defining the red, green and blue proportion for each pixel
coarse classification: information content entity

Picture grid [ifnano]
type: Class
subclass of: information content entity
definition: Commen form of representing a digital picture: The picture is represented as a XY-Grid of Data-Points containing the color and brightness information.
comment: format
coarse classification: information content entity

Pixel [ifnano]
type: Class
subclass of: information content entity
definition: Element of the picture grid
comment: format
coarse classification: information content entity

Pixel [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The smallest resolvable rectangular area of an image, either on a screen or stored in memory.
definition source: http://purl.obolibrary.org/obo/NCIT_C48367
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

Digital image processing [ifnano]
type: Class
subclass of: plan specification
definition: The use of a digital computer to process digital images through an algorithm.
coarse classification: plan specification

Image analysis [ifnano]
type: Class
subclass of: plan specification
definition: Using image data and eventually digital image processing in order to generate a corellation between this data and an analytical target.
coarse classification: plan specification

Image analysis [allotrope]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Image analysis is the discovering of patterns in an image that are correlated to qualities of the material entity the image represents or of abstract patterns. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/process#AFP_0003540
language: English
last update on: 18.08.2022
comment: allotrope
coarse classification: plan specification

Image analysis [edam]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: The analysis of a image (typically a digital image) of some type in order to extract information from it.
definition source: http://edamontology.org/operation_3443
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: plan specification

Analytical target [ifnano]
type: Class
subclass of: information content entity
definition: The information represented by one or more variables, which has to be predicted by data analysis in instrumental analytics
coarse classification: information content entity

Geometry correction [ifnano]
type: Class
subclass of: plan specification
definition: In terms of digtal image procession: correction methods to compensate image errors caused by lense distorsion or perspective.
coarse classification: plan specification

Linear discriminant analysis [ifnano]
type: Class
subclass of: plan specification
definition: Linear discriminant analysis (LDA), normal discriminant analysis (NDA), or discriminant function analysis is a generalization of Fisher's linear discriminant, a method used in statistics and other fields, to find a linear combination of features that characterizes or separates two or more classes of objects or events.
coarse classification: plan specification

Supervised learning [ifnano]
type: Class
subclass of: plan specification
definition: Machine learning task of learning a function that maps an input to an output based on example input-output pairs.
coarse classification: plan specification

Supervised learning [obi]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A machine learning process using a function that maps an input to an output based on example input-output pairs. It infers a function from labeled training data consisting of a set of training examples.
definition source: http://purl.obolibrary.org/obo/OBI_0002588
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/obi.owl
coarse classification: plan specification

Unsupervised learning [ifnano]
type: Class
subclass of: plan specification
definition: A type of algorithm that learns patterns from untagged data
coarse classification: plan specification

Unsupervised learning [obi]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A machine learning process that infers a function describing the structure of "unlabeled" data (i.e. data that has not been classified or categorized).
definition source: http://purl.obolibrary.org/obo/OBI_0002589
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/obi.owl
coarse classification: plan specification

Image histogramm / histogramm [ifnano]
type: Class
subclass of: information content entity
definition: A type of histogram that acts as a graphical representation of the tonal distribution in a digital image. It plots the number of pixels for each tonal value.
coarse classification: information content entity

Color histogramm [ifnano]
type: Class
subclass of: information content entity
definition: A multidimensional histogram of the distribution of color in an image
coarse classification: information content entity

8-bit number [ifnano]
type: Class
subclass of: information content entity
coarse classification: information content entity

16-bit number [ifnano]
type: Class
subclass of: information content entity
coarse classification: information content entity

count [ifnano]
type: Class
subclass of: information content entity
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
comment: unit
coarse classification: information content entity

count [allotrope]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The number of objects counted. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/property#AFX_0000604
language: English
last update on: 17.08.2022
comment: allotrope
coarse classification: information content entity

count [allotrope]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A datum that has non-negative integer values that is about the number of discrete things. [Allotrope]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0000984
language: English
last update on: 17.08.2022
comment: allotrope
coarse classification: information content entity

count [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Determining the number or amount of something.
definition source: http://purl.obolibrary.org/obo/NCIT_C25463
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

count [ms]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: a count is a data item denoted by an integer and represented the number of instances or occurences of an entity
definition source: http://purl.obolibrary.org/obo/STATO_0000047
imported from: ms.owl
language: English
last update on: 19.08.2023
comment: http://purl.obolibrary.org/obo/ms.owl
coarse classification: information content entity

arbitrary units [ifnano]
type: Class
subclass of: information content entity
definition: A general, relative unit of measurement
alternative term: willkürliche Einheiten
definition source: https://en.wikipedia.org/wiki/Arbitrary_unit
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
has_exact_synonym: a.u.; arb.u.; willk. E.
comment: unit
coarse classification: information content entity

arbitrary units [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A single undivided thing (unit) based on or subject to individual judgment or preference, and not by necessity, reason, or principle.
definition source: http://purl.obolibrary.org/obo/NCIT_C75765
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

zinc [ifnano]
type: Class
subclass of: information content entity
definition: The chemical element zinc
alternative term: Zink
definition source: https://en.wikipedia.org/wiki/Zinc
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
has_exact_synonym: Zn
coarse classification: material entity

zinc [bwmd]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The chemical element zinc
definition source: https://www.materials.fraunhofer.de/ontologies/BWMD_ontology/mid#BWMD_00096
imported from: BWMD ontology
language: English
last update on: 17.08.2022
comment: https://www.materials.fraunhofer.de/ontologies/BWMD_ontology
coarse classification: material entity

zinc [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: An element with atomic symbol Zn, atomic number 30, and atomic weight 65.39.
definition source: http://purl.obolibrary.org/obo/NCIT_C948
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: material entity

zinc [efo]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A zinc group element atom that has formula Zn.
definition source: http://purl.obolibrary.org/obo/CHEBI_27363
imported from: efo.owl
language: English
last update on: 19.08.2022
comment: http://www.ebi.ac.uk/efo/efo.owl
coarse classification: material entity

Standard deviation [ifnano]
type: Class
subclass of: information content entity
definition: A measure of the amount of variation of a set of values.
alternative term: Standardabweichung
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 31.03.2022
has_exact_synonym: std.dev.
coarse classification: information content entity

Standard deviation [allotrope]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The standard deviation is a measure of the amount of variation or dispersion of a set of values. [Wikipedia]
definition source: http://purl.allotrope.org/ontologies/result#AFR_0002192
language: English
last update on: 17.08.2022
comment: allotrope
coarse classification: information content entity

Standard deviation [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A measure of the range of values in a set of numbers. Standard deviation is a statistic used as a measure of the dispersion or variation in a distribution, equal to the square root of the arithmetic mean of the squares of the deviations from the arithmetic mean.
definition source: http://purl.obolibrary.org/obo/NCIT_C53322
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

Standard deviation [ms]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The standard deviation of a random variable, statistical population, data set, or probability distribution is a measure of variation which correspond to the average distance from the mean of the data set to any given point of that dataset. It also corresponds to the square root of its variance.
definition source: http://purl.obolibrary.org/obo/STATO_0000237
imported from: ms.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ms.owl
coarse classification: information content entity

Mooney viscosity [ifnano]
type: Class
subclass of: information content entity
definition: The viscosity of rubber using a standard test method and Mooney Viscometer.
definition source: https://www.astm.org/d1646-19a.html
coarse classification: information content entity

Monomer [ifnano]
type: Class
subclass of: material entity
definition: Asubstance which is capable of forming covalent bonds with a sequence of additional like or unlike molecules under the conditions of the relevant polymerforming reaction used for the particular process
coarse classification: material entity

Monomer [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A chemical subunit that can undergo polymerization by bonding to other subunits.
definition source: http://purl.obolibrary.org/obo/NCIT_C63845
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: material entity

Polymer [ifnano]
type: Class
subclass of: mixture
definition: a substance consisting of molecules characterised by the sequence of one or more types of monomer unit. Such molecules must be distributed over a range of molecular weights.
coarse classification: material entity

Polymer [chebi]
type: Class
subclass of: mixture
has curation status: uncurated
definition: A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc..
definition source: polymer
imported from: chebi.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/chebi.owl
coarse classification: material entity

Polymer [ncit]
type: Class
subclass of: mixture
has curation status: uncurated
definition: A substance made up of variable numbers of repeating structural units linked through covalent bonds.
definition source: http://purl.obolibrary.org/obo/NCIT_C48803
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: material entity

Polymer [proco]
type: Class
subclass of: mixture
has curation status: uncurated
definition: A substance or material consisting of very large molecules, or macromolecules, composed of many repeating subunits.
definition source: http://purl.obolibrary.org/obo/PROCO_0000054
imported from: proco.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/proco.owl
coarse classification: material entity

Composition [ifnano]
type: Class
subclass of: information content entity
definition: The relative proportions of monomers that make up a particular chemical polymer (raw rubber).
coarse classification: information content entity

Composition [fso]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: Composition of the material or substance.
definition source: http://www.aidimme.es/FurnitureSectorOntology.owl#hasComposition
imported from: FurnitureSectorOntology.owl
language: English
last update on: 17.08.2022
comment: http://www.aidimme.es/FurnitureSectorOntology.owl
is defined by: Furniture Sector Ontology
coarse classification: information content entity

Composition [pato]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts. [PATO]
definition source: http://purl.obolibrary.org/obo/PATO_0000025
language: English
last update on: 17.08.2022
comment: PATO
coarse classification: information content entity

Composition [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: The way in which something is made, especially in terms of its different parts; its constituents.
definition source: http://purl.obolibrary.org/obo/NCIT_C53414
imported from: ncit.owl
language: English
last update on: 19.08.2022
comment: http://purl.obolibrary.org/obo/ncit.owl
coarse classification: information content entity

sample [ifnano]
type: Class
subclass of: material entity
definition: A material entity, which is part of a larger set of the same material entity
alternative term: Probe; Materialprobe
definition source: https://en.wikipedia.org/wiki/Sample_(material)
Contributor: Sven Schwabe (IFNANO)
last update on: 06.04.2022
creation date: 06.04.2022
comment: for materials, sample is also a term used in statistics, graphics and other fileds
coarse classification: material entity
refers to competence question: IFNANO:01_CQ; IFNANO:02_CQ

Agglomerate [dik]
type: Class
subclass of: polymer
definition: Group of interlocked aggregates that are easily separated by normal rubber processing
definition: Verbund von zusammenhängenden Aggregaten, die bei normaler Kautschukverarbeitung leicht getrennt werden können @de
Contributor: Alexander Aschemann
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: 0
label: Agglomerat [dik] @de

Aggregate [dik]
type: Class
subclass of: mixture
definition: Rigid group of coalesced particles which is the smallest entity that can be dispersed by normal rubber processing
definition: Starre Gruppe von koaleszierten Partikeln, welche die kleinste Einheit ist, die bei normaler Kautschukverarbeitung dispergiert werden kann @de
Contributor: Alexander Aschemann
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Aggregat [dik] @de

Particle [dik]
type: Class
subclass of: chemical substance
definition: Kleinste erkennbare sphärische oder beinahe sphärische Einheit, die als solche einzeln existieren kann @de
definition: Smallest discernible spherical or nearly spherical unit which can exist separately
alternative term: Teilchen @de
Contributor: Alexander Aschemann
identifier: DIN ISO 1382:2016-07
last update on: 23.08.2022
creation date: 03.05.2022
comment: Die Partikel bilden in der Regel Gruppen, die als Aggregate bezeichnet werden. @de
comment: Groups of particles are generally coalesced into aggregates.
label: Partikel [dik] @de

Particle [ncit]
type: Class
subclass of: chemical entity
has curation status: uncurated
definition: An object with finite mass and size parameters.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C63850
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022
label: Partikel [ncit] @de

Polymer [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Substanz, aufgebaut aus Molekülen, die gekennzeichnet sind durch eine Vielzahl von einer oder mehreren Arten von Atomen oder Atom-Gruppierungen (konstitutive Einheiten), die wiederholt aneinandergereiht sind, in einer Menge, so dass ein gewünschtes Eigenschaftsbild erlangt wird, das sich durch die Addition oder die Entfernung einer oder mehrerer konstitutioneller Einheiten nicht wesentlich ändert @de
definition: substance composed of molecules characterized by the multiple repetition of one or more species of atoms or groups of atoms (constitutional units) linked to each other in amounts sufficient to provide a set of properties that do not vary markedly with the addition or removal of one or a few of the constitutional units
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022

Polymer [chebi]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc.
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: polymer
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022

Polymer [ncit]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: A substance made up of variable numbers of repeating structural units linked through covalent bonds.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C48803
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022

Polymer [proco]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: A substance or material consisting of very large molecules, or macromolecules, composed of many repeating subunits.
definition source: http://purl.obolibrary.org/obo/proco.owl
imported from: PROCO_0000054
Contributor: Luis Ramos
language: English
last update on: 23.08.2022
creation date: 23.08.2022

Raw Rubber [dik]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: Natur- oder synthetischer Kautschuk, gewöhnlich in Ballen- oder Paketform, welcher das Ausgangsmaterial für die Herstellung von Gummiprodukten darstellt @de
definition: natural or synthetic rubber, usually in bales or packages, forming the starting material for the manufacture of rubber products
alternative term: unbehandelter Kautschuk @de
alternative term: virgin rubber
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: It is normally free from compounding ingredients but may also, for example, take the form of a masterbatch with oil and/or filler.
comment: Rohkautschuk ist normalerweise frei von Mischungsbestandteilen, kann jedoch zum Beispiel auch als Masterbatch mit Öl und/oder Füllstoff vorliegen. @de
label: Rohkautschuk [dik] @de

Synthetic Rubber [dik]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: Kautschuk, der durch nicht biologische Polymerisation eines oder mehrerer Monomere hergestellt wird @de
definition: rubber produced by non-biologically polymerizing one or more monomers
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Synthesekautschuk [dik] @de

M-group Rubber [dik]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: Kautschuk mit einer gesättigten Kohlenstoffkette vom Polymethylen-Typ @de
definition: Rubber with a saturated carbon chain of the polymethylene type
Contributor: Alexander Aschemann
language: English
identifier: ISO 1629:2013(E)
creation date: 04.05.2022
label: M-Gruppe Kautschuk [dik] @de

Ethylene Propylene Diene Rubber [dik]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: Terpolymer aus Ethylen, Propylen und einem Dien mit dem restlichen ungesättigten Anteil des polymerisierten Diens in der Seitenkette @de
definition: Terpolymer of ethylene, propylene and a diene with the remaining unsaturated portion of the polymerized diene in the side chain
Contributor: Alexander Aschemann
language: English
identifier: ISO 1629:2013(E)
creation date: 03.05.2022
has_exact_synonym: EPDM
label: Ethylen-Propylen-Dien-‎Kautschuk ‎[dik] @de

Diene Rubber [dik]
type: Class
subclass of: rubber particle
has curation status: uncurated
definition: Kautschuktyp, der eine ungesättigte Kohlenstoffhauptkette hat, die zumeist auf Butadien oder substituiertem Butadien basiert @de
definition: type of rubber having an unsaturated carbon main chain derived mostly from butadiene or a substituted butadiene
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Dienkautschuk [dik] @de

Keltan 5470C [dik]
type: Class
subclass of: polymer
has curation status: uncurated
definition: Handelsname für ein spezifischen EPDM-Kautschuk @de
definition: Trade name for a specific EPDM rubber
Contributor: Alexander Aschemann
language: English
creation date: 04.05.2022

Filler [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: fester Mischungsbestandteil in Teilchenform, welcher aus technischen oder wirtschaftlichen Gründen zu einem relativ großen Anteil zu Kautschuk oder Kautschuklatex zugegeben werden kann @de
definition: solid compounding ingredient, in particulate form, which may be added in relatively large proportions to a rubber or rubber latex for technical or economic purposes
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Füllstoff [dik] @de

Carbon Black [dik]
type: Class
subclass of: carbon black
has curation status: uncurated
definition: Mischungsbestandteil, der im Wesentlichen aus mehr als 95 % elementaren Kohlenstoffs in der Form beinahe sphärischer Partikel mit maximalen Durchmessern kleiner als 1 μm besteht, im Allgemeinen zu Aggregaten koalesziert @de
definition: compounding ingredient consisting essentially of more than 95 % elemental carbon in the form of nearspherical particles with major diameters less than 1 μm, generally coalesced into aggregates
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: Carbon black is produced by incomplete burning or thermal decomposition of hydrocarbons.
comment: Ruß wird durch unvollständige Verbrennung oder thermische Zersetzung von Kohlenwasserstoffen produziert. @de
label: Ruß [dik] @de

Carbon Black [chebi]
type: Class
subclass of: Poligeenan
has curation status: uncurated
definition: An elemental carbon in the form of virtually pure colloidal particles that are produced by incomplete combustion or thermal decomposition of gaseous or liquid hydrocarbons under controlled conditions. A black, finely divided pellet or powder, its properties of specific surface area, particle size and structure, conductivity and colour can be varied by varying the exact conditions for its production. It is used in tyres, rubber and plastic products, printing inks and coatings.
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: carbon black
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Ruß [chebi] @de

N-Carbon Black [dik]
type: Class
subclass of: Carbon Black [chebi]
has curation status: uncurated
definition: Der Buchstabe "N" wird verwendet, um eine normale Vulkanisationsgeschwindigkeit anzugeben, die typisch ist für Furnace Blacks, die nicht speziell modifiziert wurden, um die Vulkanisierungsgeschwindigkeit zu ändern @de
definition: The letter “N” is used to indicate a normal curing rate typical of furnace blacks that have received no special modification to alter their influence on the rate of cure of rubber.
Contributor: Alexander Aschemann
language: English
identifier: ASTM D1765-10
creation date: 05.05.2022
label: N-Ruß [dik] @de

S-Carbon Black [dik]
type: Class
subclass of: Carbon Black [chebi]
has curation status: uncurated
definition: Der Buchstabe "S" wird für Channel Blacks oder für Furnace Blacks verwendet, die so modifiziert wurden, dass sie die Vulkanisationsgeschwindigkeit verringern. @de
definition: The letter “S” is used for channel blacks or for furnace blacks that have been modified to effectively reduce the curing rate of rubber.
Contributor: Alexander Aschemann
language: English
identifier: ASTM D1765-10
creation date: 05.05.2022
label: S-Ruß [dik] @de

N600-Carbon Black [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: An N carbon black with an average nitrogen surface area of 33 to 39 m²/g.
definition: Ein N-Ruß mit einer durchschnittlichen Stickstoff-Oberfläche von 33 bis 39 m²/g. @de
Contributor: Alexander Aschemann
language: English
identifier: ASTM D1765-10
creation date: 05.05.2022
label: N600-Ruß [dik] @de

Corax N660 [dik]
type: Class
subclass of: Carbon Black [chebi]
has curation status: uncurated
definition: Handelsname für ein spezifischen N600-Ruß @de
definition: Trade name for a specific N600-carbon black
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022

Softener [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Mischungsbestandteil, welcher in geringen Mengen verwendet wird, um die Viskosität einer unvulkanisierten Kautschukmischung oder die Härte eines Vulkanisats zu verringern @de
definition: compounding ingredient used in small proportions to reduce the viscosity of an unvulcanized rubber mix or the hardness of a vulcanizate
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Weichmacher ‎[dik] @de

Paraffinic Oil [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Prozessöl aus Kohlenwasserstoffen, das größtenteils oder vollständig aus Alkanen besteht @de
definition: hydrocarbon process oil, most or all of which is composed of alkanes
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Paraffinöl [dik] @de

‎P460 [dik]
type: Class
subclass of: Paraffinic Oil [dik]
has curation status: uncurated
definition: Handelsname für ein spezifisches Paraffinöl @de
definition: Trade name for a specific paraffinic oil
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022

Process Oil [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: hydrocarbon oil derived from petroleum or other sources and used as an extender or processing aid
definition: Öl auf Basis von Kohlenwasserstoffen, welches aus Erdöl oder anderen Quellen stammt und als Extender oder Verarbeitungshilfsmittel eingesetzt wird @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: ‎Prozessöl‎ [dik] @de

Processing Aid [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Mischungsbestandteil, der die Verarbeitbarkeit einer Kautschukmischung verbessert @de
definition: compounding ingredient which improves the processability of a rubber compound or mix
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Verarbeitungshilfsmittel [dik] @de

Antidegradant [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Mischungsbestandteil zur Verzögerung einer alterungsbedingten Verschlechterung @de
definition: compounding ingredient used to retard deterioration by ageing
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: Alterungsschutzmittel ist eine allgemeine Benennung für bestimmte Additive wie Antioxidantien, Ozonschutzmittel, Wachse und andere Schutzmittel. @de
comment: Antidegradant is a generic term for certain additives such as antioxidants, antiozonants, waxes and other protective materials.
label: Alterungsschutzmittel [dik] @de

Antilux 500‎ [dik]
type: Class
subclass of: Antidegradant [dik]
has curation status: uncurated
definition: Handelsname für ein spezifisches Alterungsschutzmittel @de
definition: Trade name for a specific antidegradant
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022

Activator [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: compounding ingredient used in small proportions to increase the effectiveness of an accelerator
definition: in kleinen Mengen eingesetzter Mischungsbestandteil zur Erhöhung der Effektivität eines Beschleunigers @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Aktivator [dik] @de

Activator [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A class of substances that binds to, activates and increases the activity of a target.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C154897
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Aktivator [ncit] @de

Zinc Oxide [dik]
type: Class
subclass of: material entity
has curation status: uncurated
language: English
label: Zinkoxid [dik] @de

Zinkoxid Rotsiegel [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Handelsname für ein spezifisches Zinkoxid @de
definition: Trade name for a specific zinc oxide
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022

Stearic Acid [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Stearinsäure [dik] @de

Stearic Acid [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A saturated long-chain fatty acid with an 18-carbon backbone. Stearic acid is found in various animal and plant fats, and is a major component of cocoa butter and shea butter.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C68426
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Stearinsäure [dik] @de

PALMERA B 1802-CG [dik]
type: Class
subclass of: Stearic Acid [dik]
has curation status: uncurated
definition: Handelsname für eine spezifische Stearinsäure @de
definition: Trade name for a specific stearic acid
language: English

Accelerator [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: compounding ingredient used in small amounts with a vulcanizing agent to increase the speed of vulcanization and/or enhance the physical properties of the vulcanizate
definition: in kleinen Mengen mit einem Vulkanisationsmittel eingesetzter Mischungsbestandteil zur Beschleunigung der Vulkanisationsgeschwindigkeit und/oder Verbesserung der physikalischen Eigenschaften des Vulkanisates @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Beschleuniger [dik] @de

Primary Accelerator [dik]
type: Class
subclass of: Accelerator [dik]
has curation status: uncurated
definition: in einem Vulkanisationssystem verwendeter Hauptbeschleuniger @de
definition: principal accelerator used in a vulcanizing system
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Primärbeschleuniger [dik] @de

Secondary Accelerator [dik]
type: Class
subclass of: Accelerator [dik]
has curation status: uncurated
definition: Beschleuniger, der in niedrigen Konzentrationen zusammen mit dem Erstbeschleuniger eingesetzt wird, um Vernetzungsgeschwindigkeit und Vulkanisateigenschaften zu optimieren @de
definition: accelerator used in low concentrations with the primary accelerator to optimize cure rate and vulcanizate properties
alternative term: Verstärker @de
alternative term: booster
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Zweitbeschleuniger [dik] @de

Thiazole [dik]
type: Class
subclass of: 1,3-thiazoles
has curation status: uncurated
definition: An azole in which the five-membered heterocyclic aromatic skeleton contains a N atom and one S atom.
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: CHEBI_43732
Contributor: Alexander Aschemann
language: English
creation date: 05.05.2022
label: Thiazol [dik] @de

di(benzothiazol-2-yl)disulfide [dik]
type: Class
subclass of: organic disulfide
has curation status: uncurated
alternative term: Dibenzothiazyldisulfid; 2,2′-Dithiobis(benzothiazol); Thiofid @de
Contributor: Alexander Aschemann
language: English
creation date: 05.05.2022
has_exact_synonym: MBTS
label: Di(benzothiazol-2-yl)disulfid [dik] @de

di(benzothiazol-2-yl)disulfide [chebi]
type: Class
subclass of: organic disulfide
has curation status: uncurated
definition: An organic disulfide resulting from the formal oxidative coupling of the thiol groups of two molecules of 1,3-benzothiazole-2-thiol. It is used as an accelerator in the rubber industry.
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: CHEBI_53239
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Di(benzothiazol-2-yl)disulfid [chebi] @de

Vulkacit MBTS [dik]
type: Class
subclass of: di(benzothiazol-2-yl)disulfide [chebi]
has curation status: uncurated
definition: Handelsname für ein spezifisches Di(benzothiazol-2-yl)disulfid @de
definition: Trade name for a specific di(benzothiazol-2-yl)disulfide
Contributor: Alexander Aschemann
language: English
creation date: 05.05.2022

Thiuram [dik]
type: Class
subclass of: Accelerator [dik]
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 05.05.2022

Tetrabenzylthiuramdisulfide [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 05.05.2022
has_exact_synonym: TBzTD
label: Tetrabenzylthiuramdisulfid [dik] @de

Luvomaxx TbzTD [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Handelsname für ein spezifisches Tetrabenzylthiuramdisulfid @de
definition: Trade name for a specific tetrabenzylthiuramdisulfide
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022

dithiocarbamate [dik]
type: Class
subclass of: dithiocarbamate anions
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Dithiocarbamat [dik] @de

dithiocarbamate [chebi]
type: Class
subclass of: dithiocarbamate anions
has curation status: uncurated
definition: A member of the class of dithiocarbamate anions resulting from the deprotonation of both of the dithiocarbamic acid moieties of ethylenebis(dithiocarbamic acid). The major species at pH 7.3.
alternative term: ethylenebis
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: CHEBI_77308
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Dithiocarbamat [chebi] @de

Zinc Dibenzyldithiocarbamate [dik]
type: Class
subclass of: Accelerator [dik]
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 05.05.2022
has_exact_synonym: ZBDC
label: Zink-Dibenzyldithiocarbamat [dik] @de

Rhenogran ‎ZBDC 80‎ [dik]
type: Class
subclass of: Accelerator [dik]
has curation status: uncurated
definition: Handelsname für ein spezifisches Zink-Dibenzyldithiocarbamat @de
definition: Trade name for a specific zinc dibenzyldithiocarbamate
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022

Vulcanizing Agent [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Mischungsbestandteil, der die Vernetzung des Kautschuks bewirkt @de
definition: compounding ingredient that produces crosslinking in rubber
alternative term: Vernetzer; Vernetzungsmittel @de
alternative term: curative; curing agent
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vulkanisationsmittel [dik] @de

Vulcanizing System [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Kombination aus Vulkanisationsmittel und, falls erforderlich, Beschleunigern, Aktivatoren, Verzögerern, etc., die verwendet wird, um die gewünschte Vulkanisationscharakteristik und Vulkanisateigenschaften herzustellen @de
definition: combination of vulcanizing agent and, as required, accelerators, activators, retarders, etc., used to produce the desired vulcanization characteristics and vulcanizate properties
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vulkanisationssystem [dik] @de

Cure Rate [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Geschwindigkeit, mit der eine Kautschukmischung nach Einsetzen der initialen Vulkanisation weitervernetzt @de
definition: rate at which a rubber compound vulcanizes after having reached the point of incipient vulcanization
alternative term: Vulkanisationsgeschwindigkeit @de
alternative term: vulcanization rate
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vernetzungsgeschwindigkeit [dik] @de

Retarder [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Mischungsbestandteil, eingesetzt zur Verringerung der Tendenz einer Kautschukmischung, vorzeitig zu vulkanisieren @de
definition: compounding ingredient used to reduce the tendency of a rubber compound to vulcanize prematurely
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Verzögerer [dik] @de

Sulfur [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Schwefel [dik] @de

PHR [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Masse an Mischungsbestandteilen, die zu 100 Masseeinheiten Kautschuk hinzugefügt werden @de
definition: mass of compounding ingredient added to one hundred mass units of elastomer
alternative term: Anteile pro hundert Teile Kautschuk; pphr @de
alternative term: parts per hundred rubber; pphr
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022

Formulation [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Liste der Mischungsbestandteile und ihrer Mengenverhältnisse, die bei der Herstellung einer Mischung verwendet werden @de
definition: list of compounding ingredients and their proportions, used in the preparation of a compound
alternative term: Mischungsrezeptur @de
alternative term: recipe
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Rezeptur [dik] @de

Compounding Ingredient [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Substanz, die zu einem Kautschuk oder einem Latex gegeben wird, um eine Mischung herzustellen @de
definition: substance added to a rubber or rubber latex to form a mix
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Mischungsbestandteil‎ [dik] @de

Compound [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: gründliche Mischung von Kautschuken oder anderen polymerbildenden Materialien mit allen Bestandteilen, die für das fertige Produkt notwendig sind @de
definition: intimate mixture of a rubber or rubbers or other polymer-forming materials with all the ingredients necessary for the finished product
alternative term: Kautschukmischung @de
alternative term: rubber compound
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Mischung [dik] @de

Safety Data Sheet [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Sicherheitsdatenblatt [dik] @de

Product Data Sheet [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Produktdatenblatt [dik] @de

Mill [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: Maschine mit zwei gegensätzlich drehenden Walzen, häufig erwärmbar oder kühlbar, welche gewöhnlich mit verschiedenen Umfangsgeschwindigkeiten betrieben werden, und mit einstellbarem Walzenspalt zum Mastizieren, Mischen, Verschneiden, Vorwärmen oder zum Auswalzen @de
definition: machine with two counter-rotating rolls, frequently heated or cooled, usually driven at different speeds, and having an adjustable nip for mastication, mixing, blending, warm-up or sheeting
alternative term: Zwei-Rollen-Walzwerk @de
alternative term: two-roll mill
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Walzwerk [dik] @de

Roll [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: Zylinder, der ein rotierendes Hauptelement eines Kalanders oder eines Walzwerks bildet @de
definition: cylinder forming a major, rotating member of a calender or mill
alternative term: Walzenzylinder @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Walze [dik] @de

Fixed Roll [dik]
type: Class
subclass of: process
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Festwalze [dik] @de

Setting Roll [dik]
type: Class
subclass of: process
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Stellwalze [dik] @de

Rotational Frequency [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality which inheres in a bearer by virtue of its speed rotating around itself.
alternative term: speed
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Drehzahl [dik] @de

Rotational Frequency Unit [dik]
type: Class
subclass of: frequency unit
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Drehzahleinheit [dik] @de

Rotational Frequency Unit [uo]
type: Class
subclass of: frequency unit
has curation status: uncurated
definition: "A unit which is a standard measure of the number of rotations in a given time." [NIST:NIST]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_0000058
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Drehzahleinheit [ou] @de

Frequency Unit [dik]
type: Class
subclass of: UO_0000000
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Frequenzeinheit [dik] @de

Frequency Unit [uo]
type: Class
subclass of: UO_0000000
has curation status: uncurated
definition: "A unit which is a standard measure of the number of repetitive actions in a particular time." [NIST:NIST]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: frequency unit
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Frequenzeinheit [uo] @de

Frequency Unit [ncit]
type: Class
subclass of: UO_0000000
has curation status: uncurated
definition: An indication of the type of unit of measure being used to express a number of regular events in a given time per unit of time.
alternative term: Unit of Frequency
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C67313
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Frequenzeinheit [ncit] @de

Turns per Second [dik]
type: Class
subclass of: UO_0000058
has curation status: uncurated
definition: A rotational frequency unit which is equal to the number of completed turns in a period of time that equals to 1 second.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
has_exact_synonym: 1/s
label: Umdrehungen pro Sekunde [dik] @de

Turns per Second [uo]
type: Class
subclass of: UO_0000058
has curation status: uncurated
definition: "A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second." [NIST:NIST]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: uo.owl
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Umdrehungen pro Sekunde [uo] @de

Turns per Minute [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: A rotational frequency unit which is equal to the number of completed turns in a period of time that equals to 1 minute.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
has_exact_synonym: 1/min
label: Umdrehungen pro Minute [dik] @de

Fixed Roll Speed [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Festwalzen-Drehzahl [dik] @de

Setting Roll Speed [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Stellwalzen-Drehzahl [dik] @de

Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Temperatur [dik] @de

Temperature [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: A measure of the average kinetic energy of a system of particles. Temperature may be quantified, in the context of thermodynamics, as the potential of one system to transfer thermal energy to another system until both systems reach a state of thermal equilibrium.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C25206
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Temperatur [ncit] @de

Temperature [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality of the thermal energy of a system.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: temperature
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Temperatur [pato] @de

Temperature [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: Temperature is the extent to which an object is hot.
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: Temperature
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Temperatur [om] @de

Temperature [efo]
type: Class
subclass of: quality
has curation status: uncurated
definition: Temperature is a physical quality of the thermal energy of a system.
definition source: http://www.ebi.ac.uk/efo/efo.owl
imported from: EFO_0001702
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Temperatur [efo] @de

Temperature Unit [dik]
type: Class
subclass of: UO_0000000
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Temperatureinheit [dik] @de

Temperature Unit [uo]
type: Class
subclass of: UO_0000000
has curation status: uncurated
definition: "A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter." [Wikipedia:Wikipedia]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: temperature unit
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Temperatureinheit [uo] @de

Temperature Unit [ncit]
type: Class
subclass of: UO_0000000
has curation status: uncurated
definition: An indication of the type of unit of measure being used to express a temperature.
alternative term: Unit of Temperature @de
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C44276
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Temperatureinheit [ncit] @de

Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
alternative term: Temperierungsgerät; Temperierungsaggregat; Temperiersteuergerät @de
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
has_exact_synonym: TCU
label: Temperatursteuergerät [dik] @de

Fixed Roll Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Festwalzen-Temperatursteuergerät [dik] @de

Setting Roll Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Stellwalzen-Temperatursteuergerät [dik] @de

Fixed Roll Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Festwalzen-Temperatur [dik] @de

Setting Roll Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Stellwalzen-Temperatur [dik] @de

NIP [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: Abstand zwischen den Walzenoberflächen einer Walze oder eines Kalanders, gemessen zwischen den Mittelpunkten @de
definition: radial clearance between the roll surfaces of a mill or calender on a line of centres
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Walzenspalt [dik] @de

Sheeting [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: Process of converting a rubber or rubber mix, rubber dough or coagulated latex into a form in which the thickness is small in proportion to the length
definition: Prozess der Überführung von Kautschuk oder einer Kautschukmischung, Gummilösung oder koaguliertem Latex in eine Form, bei der die Dicke klein gegenüber der Länge ist @de
alternative term: Plattenziehen @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Auswalzen [dik] @de

Dispersion [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: Distribution of one or more ingredients into a rubber, a rubber blend or a continuum material, by the application of shearing forces, in order to confer optimum and uniform properties
definition: Verteilen eines oder mehrerer Bestandteile in Kautschuk, Kautschukblends oder einer kontinuierlichen Phase durch Anwendung von Scherkräften, um optimale und homogene Eigenschaften zu erhalten @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Dispergierung [dik] @de

Mastication [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: Prozess der irreversiblen Reduzierung der Molmasse des Kautschuks, entweder im rohen oder im gemischten Zustand, durch das Einbringen mechanischer Arbeit (Scherung) und durch atmosphärischen Sauerstoff, manchmal unter Zuhilfenahme von Abbaumitteln und Wärme @de
definition: the molecular mass of a rubber, in either the raw or the mixed state, by the action of mechanical work (shear) and atmospheric oxygen, sometimes assisted by peptizers and heat
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Mastikation [dik] @de

Mastication [ncit]
type: Class
subclass of: process
has curation status: uncurated
definition: The process by which food is torn or crushed by the teeth.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C62062
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Mastikation [ncit] @de

Mastication [hp]
type: Class
subclass of: process
has curation status: uncurated
definition: The process of biting and mashing food with the teeth prior to swallowing.
definition source: http://purl.obolibrary.org/obo/hp.owl
imported from: GO_0071626
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Mastikation [hp] @de

Processability [dik]
type: Class
subclass of: measurement unit label
has curation status: uncurated
definition: relative Einfachheit, mit welcher Rohkautschuk oder Kautschukmischungen in einer Maschine zur Kautschukverarbeitung gehandhabt werden kann @de
definition: relative ease with which raw or compounded rubbers can be handled in rubber-processing machinery
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Verarbeitbarkeit [dik] @de

Mixer Device [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A device for mixing/blending materials or signals.
definition: Ein Gerät zum Mischen/Vermischen von Materialien oder Signalen. @de
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mischer [dik] @de

Mixer Device [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A mechanical device designed to blend materials or an electronic device designed to blend signals.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C50071
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Mischer [ncit] @de

Mechanical Mixer [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A mixer device designed for mechanically mixing/blending materials.
definition: Eine Mischvorrichtung, die zum mechanischen Mischen von Materialien bestimmt ist. @de
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mechanischer Mischer [dik] @de

Mechanical Mixer [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A mechanical component designed to blend materials.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C172142
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Mechanischer Mischer [ncit] @de

Internal Mixer [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Maschine mit Temperaturregelung, welche einen oder mehrere Rotoren in einer geschlossenen Kammer beinhaltet und zum Mastizieren und/oder zur Einarbeitung und Dispersion von Mischungsbestandteilen in den Kautschuk genutzt wird @de
definition: machine with temperature controls containing one or more rotors operating in a closed cavity used to masticate and/or to incorporate and disperse compounding ingredients into the rubber
alternative term: Kneter @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Innenmischer [dik] @de

Rotor [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022

Mixing Chamber [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mischkammer [dik] @de

Drop Door [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Klappsattel [dik] @de

Stamp [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stempel [dik] @de

Rotor Speed [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Rotor-Drehzahl [dik] @de

Rotor Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Rotor-Temperatursteuergerät [dik] @de

Rotor Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Rotor-Temperatur [dik] @de

Mixing Chamber Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mischkammer-Temperatursteuergerät [dik] @de

Mixing Chamber Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mischkammer-Temperatur [dik] @de

Drop Door Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Klappsattel-Temperatursteuergerät [dik] @de

Drop Door Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Klappsattel-Temperatur [dik] @de

Stamp Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stempel-Temperatursteuergerät [dik] @de

Stamp Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stempel-Temperatur [dik] @de

Torque [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Drehmoment [dik] @de

Torque [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: Torque is the effectiveness of a force to produce rotation about an axis, measured by the product of the force and the perpendicular distance from the line of action of the force to the axis.
definition source: http://www.ontology-of-units-of-measure.org/resource/om-2
imported from: Torque
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Drehmoment [om] @de

Torque Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Drehmoment Einheit [dik] @de

Newtonmeter [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
has_exact_synonym: Nm

Rotor Torque [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Rotor-Drehmoment [dik] @de

Mass Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Massetemperatur [dik] @de

Length [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Länge [dik] @de

Length [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: The linear extent in space from one end of something to the other end, or the extent of something from beginning to end.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C25334
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Länge [ncit] @de

Length [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A 1-D extent quality which is equal to the distance between two points.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: length
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Länge [pato] @de

Length [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: Length is the amount of space between two geographical points along a curve. It is a base quantity in the International System of Units and other systems of units. Length is speed times time. The metre, a base unit of length in the International System of Units, is defined in terms of speed of light during a certain time interval.
definition source: http://www.ontology-of-units-of-measure.org/resource/om-2
imported from: Length
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Länge [om] @de

Length [ms]
type: Class
subclass of: quality
has curation status: uncurated
definition: PEFF keyword for the sequence length.
definition source: http://purl.obolibrary.org/obo/ms.owl
imported from: PEFF_0001006
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Länge [ms] @de

Length Unit [dik]
type: Class
subclass of: UO_0000000
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Längen Einheit [dik] @de

Length Unit [uo]
type: Class
subclass of: UO_0000000
has curation status: uncurated
definition: "A unit which is a standard measure of the distance between two points." [Wikipedia:Wikipedia]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: length unit
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Längen Einheit [uo] @de

Length Unit [ncit]
type: Class
subclass of: UO_0000000
has curation status: uncurated
definition: An indication of the type of unit of measure being used to express a length or distance.
alternative term: Unit of Length @de
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C42578
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Längen Einheit [ncit] @de

millimeter [dik]
type: Class
subclass of: UO_1000008
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
has_exact_synonym: mm

millimeter [ncit]
type: Class
subclass of: UO_1000008
has curation status: uncurated
definition: A metric unit of length equal to one thousandth of a meter (10E-3 meter) or approximately 0.03937 inch.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C28251
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022

millimeter [uo]
type: Class
subclass of: UO_1000008
has curation status: uncurated
definition: "A length unit which is equal to one thousandth of a meter or 10^[-3] m." [NIST:NIST]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: millimeter
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022

Stamp Distance [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stempelweg [dik] @de

Addition Sequence [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Zugabereihenfolge [dik] @de

Time of Addition [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Zugabezeitpunkt [dik] @de

Power [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Leistung [dik] @de

Power [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality inhering in a bearer by virtue of the bearer's rate of doing work.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: PATO_0001024
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Leistung [pato] @de

Power [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: Power is the time rate at which work is done. It is a derived quantity in the International System of Units. Power is energy divided by time.
definition source: http://www.ontology-of-units-of-measure.org/resource/om-2
imported from: Power
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Leistung [om] @de

Electrical Power [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Elektrische Leistung [dik] @de

Mixing Time [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mischzeit [dik] @de

Filling Ratio [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality which inheres in a bearer by virtue of the ratio of the volume of a substance contained in the bearer and the bearer's own volume.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Füllgrad [dik] @de

Number of Mixing Stages [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mischstufenanzahl [dik] @de

Batch [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: Product of one mixing operation
definition: Produkt eines Mischungsvorganges @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Charge [dik] @de

Batch [ncit]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A quantity of people or things treated or regarded as a group, especially when subdivided from a larger group.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C67073
Contributor: Luis Ramos
language: English
creation date: 24.08.2022
label: Charge [ncit] @de

Extruder [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Maschine, die mit Hilfe einer Schnecke oder einer hydraulischen Presse kontinuierlich ein Material formt, indem dieses durch eine oder mehrere Schablonen gepresst wird @de
definition: machine which, through the use of a screw or a hydraulic ram, continuously shapes a material by forcing it through a die or dies
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022

Single Screw Extruder [dik]
type: Class
subclass of: Extruder [dik]
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Einschneckenextruder [dik] @de

Pin Extruder [dik]
type: Class
subclass of: Extruder [dik]
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Stiftextruder [dik] @de

Pin [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stift [dik] @de

Screw [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: rotating member with one or more helical grooves, used to propel rubber along the barrel of an extruder
definition: rotierendes Glied mit einer oder mehreren helixförmigen Rillen, das verwendet wird, um einen Kautschuk innerhalb eines Extruderrohrs voranzutreiben @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Schnecke [dik] @de

Die [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Teil eines Extruders, durch den das Material gedrückt wird und um ein Profil des Extrudats zu formen @de
definition: that part of an extruder through which material is forced, forming a profile of the extrudate
alternative term: Werkzeug; Düse @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Schablone [dik] @de

Extrudate [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Produkt eines Extrusionsprozesses @de
definition: product of an extrusion process
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Extrudat [dik] @de

Extruder Head [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Teil eines Extruders, welcher die Schablone mit Halterung enthält @de
definition: that part of an extruder which houses the die and die holder
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Extruderkopf [dik] @de

Extrusion [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: continuous shaping of a material by passage through a die
definition: kontinuierliches Formen eines Materials, indem dieses durch eine Schablone gepresst wird @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Extrudieren [dik] @de

Extrusion [rex]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A transformation in which an atom or group Y connected to two other atoms or groups X and Z is lost from a molecule, leading to a product in which X is bonded to Z, e.g. X-Y-Z --> X-Z + Y.
definition source: http://purl.obolibrary.org/obo/rex.owl
imported from: REX_0000100
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Extrudieren [rex] @de

Extrusion [chmo]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A process used to create objects of a fixed cross-sectional profile by forcing or drawing a material through a die.
definition source: http://purl.obolibrary.org/obo/chmo.owl
imported from: CHMO_0001613
Contributor: Luis Ramos
language: English
last update on: 24.08.2022
creation date: 24.08.2022
label: Extrudieren [chmo] @de

Die Swell [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: Unterschied zwischen den Dimensionen des Profilquerschnittes eines Extrudats und den korrespondierenden Dimensionen des Auslaufkanals, welcher üblicherweise als prozentuelle Zunahme der Fläche des Querschnittes ausgedrückt wird @de
definition: difference between the dimensions of the cross-section of an extrudate and the corresponding dimensions of the die orifice, usually quantified as the percentage increase in the crosssectional area
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Spritzquellung [dik] @de

Haul-off Speed [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Abzugsgeschwindigkeit [dik] @de

Conveyor Belt [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Förderband [dik] @de

Mass Throughput [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Massedurchsatz [dik] @de

Pressure Variation [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Druckschwankung [dik] @de

Geometry Variation [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Geometrieschwankung [dik] @de

Surface [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Oberfläche [dik] @de

Surface [ncit]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: The extended two-dimensional outer boundary of a three-dimensional object.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C25245
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Oberfläche [ncit] @de

Surface Defect [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Oberflächenfehler [dik] @de

Surface Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Oberflächentemperatur [dik] @de

Screw Speed [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Schneckendrehzahl [dik] @de

Pressure [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Druck [dik] @de

Pressure [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: pressure
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Druck [pato] @de

Pressure [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: Pressure is the force applied to or distributed over a surface. It is a derived quantity in the International System of Units. Pressure is force divided by area.
definition source: http://www.ontology-of-units-of-measure.org/resource/om-2
imported from: Pressure
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Druck [om] @de

Die Geometry [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Schablonengeometrie [dik] @de

Extrudate Cross Section [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Extrudatquerschnitt [dik] @de

Sensor [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022

Sensor [sosa]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Device, agent (including humans), or software (simulation) involved in, or implementing, a Procedure. Sensors respond to a stimulus, e.g., a change in the environment, or input data composed from the results of prior Observations, and generate a Result. Sensors can be hosted by Platforms.
definition source: http://www.w3.org/ns/sosa/
imported from: Sensor
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022

Sensor [chmo]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A piece of apparatus that is used to measure a physical quantity.
definition source: http://purl.obolibrary.org/obo/chmo.owl
imported from: CHMO_0002793
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022

Temperature Measuring Sword [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Temperaturmessschwert [dik] @de

Pressure Sensor [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Drucksensor [dik] @de

Temperature Sensor [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Temperatursensor [dik] @de

Gearbox [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Getriebe [dik] @de

Engine [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Motor [dik] @de

Engine [envo]
type: Class
subclass of: material entity
has curation status: uncurated
alternative term: motor
definition source: http://purl.obolibrary.org/obo/envo.owl
imported from: ENVO_01000610
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Motor [envo] @de

Feeding Roll [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Speisewalze [dik] @de

Pin Zone [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stiftzone [dik] @de

Feeding Zone [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Einzugszone [dik] @de

Molding Zone [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Werkzeugzone [dik] @de

Feeding Roll Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Speisewalzen-Temperatursteuergerät [dik] @de

Feeding Roll Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Speisewalzen-Temperatur [dik] @de

Screw Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Schnecken-Temperatursteuergerät [dik] @de

Screw Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Schnecken-Temperatur [dik] @de

Feeding Zone Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Einzugszonen-Temperatursteuergerät [dik] @de

Feeding Zone Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Einzugszonen-Temperatur [dik] @de

Pin Zone Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stiftzonen-Temperatursteuergerät [dik] @de

Pin Zone Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Stiftzonen-Temperatur [dik] @de

Molding Zone Temperature Control Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Werkzeugzonen-Temperatursteuergerät [dik] @de

Molding Zone Temperature [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Werkzeugzonen-Temperatur [dik] @de

Vulcanization Time [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Vulkanisationszeit [dik] @de

Crosslink Density [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Anzahl von Vernetzungen in einem Vulkanisat je Volumen- oder Masseneinheit @de
definition: number of crosslinks per unit volume or unit mass of vulcanizate
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vernetzungsdichte [dik] @de

Vulcanizate [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Produkt der Vulkanisation einer Kautschukmischung @de
definition: product of the vulcanization of a rubber compound
alternative term: vulcanized rubber
alternative term: vulkanisierter Kautschuk @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vulkanisat [dik] @de

Crosslink [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: chemical bond or atom(s) joining two rubber chains or two parts of the same rubber chain as a result of vulcanization
definition: chemische Bindung oder Atom(e), die zwei Kautschukketten oder zwei Teile derselben Kette verbinden als Ergebnis der Vulkanisation @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: In a vulcanizate, trapped chain entanglements can act as physical crosslinks and contribute to the crosslink density.
comment: In einem Vulkanisat können eingeschlossene Verschlaufungen als physikalische Vernetzungen fungieren und einen Beitrag zur Vernetzungsdichte leisten. @de
label: Vernetzung [dik] @de

Crosslink [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: Any covalent linkage between two polymers or between two different regions of the same polymer.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C47936
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Vernetzung [ncit] @de

Crosslinking [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: 〈Aktion〉 Erzeugung von Vernetzungen zwischen oder innerhalb von Kautschukketten unter Ausbildung eines Netzwerks @de
definition: 〈act of〉 insertion of crosslinks between or within rubber chains to give a network structure
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vernetzen [dik] @de

State of Cure [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Zustand eines Vulkanisats während des Vulkanisationsverlaufs, gemessen an dessen Struktur oder dessen Eigenschaften @de
definition: condition of a vulcanizate during the course of vulcanization, measured in terms of its structure or properties
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vernetzungsgrad [dik] @de

Vulcanization [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: Verfahren, üblicherweise auf Hitze basierend, bei dem Kautschuk durch eine Veränderung seiner chemischen Struktur (zum Beispiel Vernetzung) in einen Zustand überführt wird, in dem die elastischen Eigenschaften erzeugt, wiederhergestellt oder verbessert oder über einen größeren Tempe-raturbereich erweitert werden @de
definition: process, usually involving heat, in which rubber, through a change in its chemical structure (for example, crosslinking), is converted to a condition in which the elastic properties are conferred or re-established or improved or extended over a greater range of temperatures
alternative term: Vernetzung @de
alternative term: cure
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vulkanisation [dik] @de

Autoclave [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Druckkessel, der zur Vulkanisation von Kautschuk in Dampf oder Gas genutzt wird @de
definition: pressurized vessel used for vulcanizing rubber in a vapour or gas
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Autoklav [dik] @de

Autoclave[obi]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A device that is used to sterilize equipment and supplies by subjecting them to high pressure steam at 121 C or more, typically for 15 to 20 minutes depending on the size of the load and the contents.
definition source: http://purl.obolibrary.org/obo/obi.owl
imported from: autoclave
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Autoklav [obi] @de

Autoclave [chmo]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A thick-walled steel vessel used during synthesis methods that require both high pressures and high temperatures.
definition source: http://purl.obolibrary.org/obo/chmo.owl
imported from: CHMO_0002166
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Autoklav [chmo] @de

Plateau Cure [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: Art der Vulkanisation, bei der das Modul des Vulkanisats ein Maximum erreicht und dann über einen längeren Zeiraum bei der entsprechenden Vulkanisationstemperatur nahezu konstant bleibt @de
definition: type of vulcanization during which the modulus of the vulcanizate proceeds to a maximum and then remains essentially constant for a substantial period at the vulcanization temperature
alternative term: Vulkanisationsebene @de
alternative term: flat cure
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vulkanisationsplateau [dik] @de

Optimum Cure [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Vulkanisationsbedingungen, die notwendig sind, um einen akzeptablen Kompromiss zwischen verschiedenen gewünschten Vulkanisateigenschaften zu erzielen bzw. den optimalen Wert für eine bestimmte Eigenschaft zu erhalten @de
definition: condition of vulcanization required to achieve an acceptable compromise among a number of desired vulcanizate properties or the optimum value of a selected property
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Vulkanisationsoptimum [dik] @de

Overcure [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Vulkanisationszustand jenseits des Vulkanisationsoptimums @de
definition: state of vulcanization beyond the optimum cure
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: Overcure is generally caused by too long a time and/or too high a temperature of vulcanization and/or post cure, and/or a surplus of vulcanizing agents.
comment: Übervulkanisation wird gewöhnlich hervorgerufen durch zu lange Heizzeit und/oder zu hohe Vulkanisations- und/oder Nachvulkanisationstemperatur und/oder ein Übermaß an Vulkanisationsmitteln. @de
label: Übervulkanisation [dik] @de

Undercure [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Zustand der Vulkanisation unterhalb des Vulkanisationsoptimums @de
definition: state of vulcanization less than the optimum cure
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: Undercure is generally caused by too short a time and/or too low a temperature of vulcanization and/or post cure, and/or a deficiency of vulcanizing agents.
comment: Untervulkanisation wird im Allgemeinen durch zu kurze Zeit und/oder zu niedrige Vulkanisationstemperatur und/oder Nachvulkanisation und/oder Mängel der Vulkanisationsmittel hervorgerufen. @de
label: Untervulkanisation [dik] @de

Sample [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: ein oder mehrere Teile, entnommen aus einem Los, um Informationen über dieses Los zu liefern und möglicherweise als Entscheidungsbasis über das Los oder seinen Herstellprozess zu dienen @de
definition: one or more items taken from a lot and intended to provide information on the lot and possibly to serve as a basis for a decision on the lot or on the process which had produced it
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Probe [dik] @de

Sample [sosa]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Feature which is intended to be representative of a FeatureOfInterest on which Observations may be made.
definition source: http://www.w3.org/ns/sosa/
imported from: Sample
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Probe [sosa] @de

Sample [nmrcv]
type: Class
subclass of: material entity
has curation status: uncurated
definition: tempdef: A sample is a role that is played by an object of interest in an investigation used to obtain generalizable information about the sample source. defprov: Daniel Schober
definition source: http://nmrML.org/nmrCV
imported from: NMR:1000457
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Probe [nmrcv] @de

Test Piece [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Körper eines Materials von geeigneter Form und Dimension, fertig vorbereitet zur Verwendung in einer Prüfung @de
definition: piece of material of appropriate shape and size, prepared so that it is ready for use in a test
alternative term: Probekörper @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: Die englischen Benennungen „test specimen“ und „specimen“ werden häufig verwendet, um einen „Prüfkörper“ zu bezeichnen. @de
comment: The terms “test specimen” and “specimen” are also widely used to denote “test piece”.
label: Prüfkörper [dik] @de

Scrap Rubber [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: raw, compounded, vulcanized or partially vulcanized rubber in the form of end-of-life rubber products or factory scrap
definition: unverarbeiteter, gemischter, vulkanisierter oder teilvulkanisierter Kautschuk in Form von Altgummierzeugnissen oder Fabrikabfall @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Gummiabfall [dik] @de

Factory Scrap [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: raw, compounded, vulcanized or partially vulcanized rubber rejected or generated as waste during product manufacture and found unsuitable for further use unless recycled
definition: roher, gemischter, vulkanisierter oder teilweise vulkanisierter Kautschuk, der bei der Produktion ver-worfen oder als Abfall deklariert und für die weitere Verwendung, außer zum Recyceln, als ungeeignet befunden wird @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Produktionsabfall [dik] @de

Physical Object Quality [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: physical object quality
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Qualität des physischen Objekts [dik] @de

Physical Object Quality [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: physical object quality
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Qualität des physischen Objekts [pato] @de

Physical Quality [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: physical quality
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: physikalische Qualität [dik] @de

Physical Quality [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A quality which inheres in a continuant.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: physical quality
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: physikalische Qualität [pato] @de

Measurement Unit Label [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: measurement unit label
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Label der Messeinheit [dik] @de

Measurement Unit Label [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
definition source: http://purl.obolibrary.org/obo/iao.owl
imported from: measurement unit label
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Label der Messeinheit [pato] @de

Datum Label [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: datum label
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Bezugspunkt-Label [dik] @de

Datum Label [iao]
type: Class
subclass of: quality
has curation status: uncurated
definition: A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label
definition source: http://purl.obolibrary.org/obo/iao.owl
imported from: datum label
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Bezugspunkt-Label [iao] @de

Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
alternative term: Test @de
alternative term: testing; test
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: assay
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Prüfung [dik] @de

Assay [ncit]
type: Class
subclass of: process
has curation status: uncurated
definition: A qualitative or quantitative analysis performed to determine the amount of a particular constituent in a sample or the biological or pharmacological properties of a drug.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C60819
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Prüfung [ncit] @de

Assay [obi]
type: Class
subclass of: process
has curation status: uncurated
definition: A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.
definition source: http://purl.obolibrary.org/obo/obi.owl
imported from: assay
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Prüfung [obi] @de

Density Measurement Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: An assay with the objective to produce information about the density of the material entity that is the evaluant, by physically examining it or its proxies.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Prüfung zur Dichtemessung [dik] @de

Mass Density [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Masse pro Volumeneinheit eines Materials inklusive eventueller Hohlräume @de
definition: mass per unit volume of a material, including any voids present
alternative term: Dichte @de
alternative term: density; bulk density
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 04.05.2022
label: Massendichte [dik] @de

Mass Density [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: A measure of the compactness of a substance, expressed as its mass per unit volume.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C75762
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Massendichte [ncit] @de

Mass Density [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: PATO_0001019
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Massendichte [pato] @de

Mass Density Unit [dik]
type: Class
subclass of: UO_0000182
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Massendichte Einheit [dik] @de

Mass Density Unit [uo]
type: Class
subclass of: UO_0000182
has curation status: uncurated
definition: "A density unit which is a standard measure of the mass of a substance in a given volume." [UOC:GVG]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_0000052
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Massendichte Einheit [uo] @de

Unit Of Mass Density [ncit]
type: Class
subclass of: UO_0000182
has curation status: uncurated
definition: An indication of the type of unit of measure being used to express a mass density.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C42575
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Massendichte Einheit [ncit] @de

Gram Per Cubic Centimeter [dik]
type: Class
subclass of: UO_1000084
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
has_exact_synonym: g/cm³
label: Gramm pro Kubikzentimeter [dik] @de

Gram Per Cubic Centimeter [uo]
type: Class
subclass of: UO_1000084
has curation status: uncurated
definition: "A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters." [UOC:GVG]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_0000084
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Gramm pro Kubikzentimeter [uo] @de

Viscosity Measurement Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: An assay with the objective to produce information about the viscosity of the material entity that is the evaluant, by physically examining it or its proxies.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Prüfung zur Viskositätsmessung [dik] @de

Mooney Viscosity Measurement Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: An assay with the objective to produce information about the Mooney viscosity of the material entity that is the evaluant, by physically examining it or its proxies.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Prüfung zur Mooney-Viskositätsmessung [dik] @de

Viscosity [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Viskosität [dik] @de

Viscosity [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: The resistance of a liquid to sheer forces and flow.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C75912
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Viskosität [ncit] @de

Viscosity [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality of a fluid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: PATO_0000992
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Viskosität [pato] @de

Mooney Viscosity [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Maß für die Viskosität eines Rohkautschuks oder einer Kautschukmischung, bestimmt mit einem Mooney-Scherscheibenviskosimeter @de
definition: measure of the viscosity of a raw rubber or rubber compound, determined using a Mooney shearing-disc viscometer
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
label: Mooney Viskosität [dik] @de

Viscosity Unit [dik]
type: Class
subclass of: UO_0000000
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Viskositätseinheit [dik] @de

Viscosity Unit [uo]
type: Class
subclass of: UO_0000000
has curation status: uncurated
definition: "A unit which is a standard measure of the internal resistance of fluids to flow." [UOC:GVG]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_0000256
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Viskositätseinheit [uo] @de

Mooney Viscosity Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: A viscosity unit which is a standard measure of the Mooney viscosity.
definition: Eine Viskositätseinheit, die ein Standardmaß für die Mooney-Viskosität ist. @de
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Mooney Viskositätseinheit [dik] @de

Mooney Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
has_exact_synonym: MU
label: Mooney Einheit [dik] @de

Quality of a Substance [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Qualität eines Stoffes [dik] @de

Quality of a Substance [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A quality inhering in a bearer by virtue of its constitution.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: quality of a substance
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Qualität eines Stoffes [pato] @de

Quality of a Liquid [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Qualität einer Flüssigkeit [dik] @de

Quality of a Liquid [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: quality of a liquid
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Qualität einer Flüssigkeit [pato] @de

Protocol [dik]
type: Class
subclass of: information content entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Protokoll [dik] @de

Protocol [ncit]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A rule which guides how an activity should be performed.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C42651
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Protokoll [ncit] @de

Protocol [obi]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.
definition source: http://purl.obolibrary.org/obo/obi.owl
imported from: protocol
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Protokoll [obi] @de

Protocol [edam]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A human-readable collection of information about about how a scientific experiment or analysis was carried out that results in a specific set of data or results used for further analysis or to test a specific hypothesis.
definition source: http://edamontology.org
imported from: data 2531
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Protokoll [edam] @de

Measurement Protocol [dik]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A protocol which specifies the conditions, procedures, and instruments used for conducting a measurement assay in a sufficient level of detail to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the measurement assay.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Messprotokoll [dik] @de

Material Processing Protocol [dik]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A protocol which specifies the conditions, procedures, and instruments used for conducting a material processing in a sufficient level of detail to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the material processing.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Materialverarbeitungsprotokoll [dik] @de

Manufacturing Specification [dik]
type: Class
subclass of: information content entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Herstellungsvorschrift [dik] @de

Density Measurement Protocol [dik]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A measurement protocol for reliably reproducing the density measurement assay.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Protokoll zur Dichtemessung [dik] @de

Viscosity Measurement Protocol [dik]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A measurement protocol for reliably reproducing the viscosity measurement assay.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Protokoll zur Viskositätsmessung [dik] @de

Mooney Viscosity Measurement Protocol [dik]
type: Class
subclass of: information content entity
has curation status: uncurated
definition: A viscosity measurement protocol for reliably reproducing the Mooney viscosity measurement assay.
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Protokoll zur Mooney-Viskositätsmessung [dik] @de

Degree Celsius [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
has_exact_synonym: °C
label: Grad Celsius [dik] @de

Degree Celsius [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: A unit of temperature of the temperature scale designed so that the freezing point of water is 0 degrees and the boiling point is 100 degrees at standard atmospheric pressure. The current official definition of the Celsius sets 0.01 C to be at the triple point of water and a degree to be 1/273.16 of the difference in temperature between the triple point of water and absolute zero. One degree Celsius represents the same temperature difference as one Kelvin. [ NCI ]
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C42559
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Grad Celsius [ncit] @de

Degree Celsius [uo]
type: Class
subclass of: UO_1000027
has curation status: uncurated
definition: "A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K." [NIST:NIST]
definition source: degree Celsius
imported from: degree Celsius
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Grad Celsius [uo] @de

Degree Celsius [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: The degree Celsius is a unit of temperature defined as 1 kelvin. The degree Celsius is a derived unit in the International System of Units.
definition source: http://www.ontology-of-units-of-measure.org/resource/om-2
imported from: degreeCelsius
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Grad Celsius [om] @de

Material Processing [dik]
type: Class
subclass of: process
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Materialverarbeitung [dik] @de

Material Processing [obi]
type: Class
subclass of: process
has curation status: uncurated
definition: A planned process which results in physical changes in a specified input material
definition source: http://purl.obolibrary.org/obo/obi.owl
imported from: material processing
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Materialverarbeitung [obi] @de

Function [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition source: function
imported from: function
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Funktion [dik] @de

Function [ncit]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: The normal action performed by a structure or device.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C25518
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Funktion [ncit] @de

Function [mi]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: Biological function of a participant or of an interaction.
definition source: http://purl.obolibrary.org/obo/mi.owl
imported from: MI_0613
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Funktion [mi] @de

Device [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Gerät [dik] @de

Device [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: An object contrived for a specific purpose.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C62103
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Gerät [ncit] @de

Device [obi]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent.
definition source: http://purl.obolibrary.org/obo/obi.owl
imported from: device
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Gerät [obi] @de

Measurement Device [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: Messgerät [dik] @de

Measurement Device [ncit]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Any device used to determine the dimension of an object.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C81182
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Messgerät [ncit] @de

Measurement Device [obi]
type: Class
subclass of: material entity
has curation status: uncurated
definition: A device in which a measure function inheres.
definition source: http://purl.obolibrary.org/obo/obi.owl
imported from: measurement device
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Messgerät [obi] @de

Processed Material [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 10.05.2022
label: verarbeitetes Material [dik] @de

Processed Material [obi]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Is a material entity that is created or changed during material processing.
definition source: http://purl.obolibrary.org/obo/obi.owl
imported from: processed material
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: verarbeitetes Material [obi] @de

Mixing [dik]
type: Class
subclass of: process
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Mischen [dik] @de

Mixing [chmo]
type: Class
subclass of: process
has curation status: uncurated
definition: The combining of components, particles or layers into a more homogeneous state. The mixing may be achieved manually or mechanically by shifting the material with stirrers or pumps or by revolving or shaking the container. The process μst not permit segregation of particles of different size or properties. Homogeneity may be considered to have been achieved in a practical sense when the sampling error of the processed portion is negligible compared to the total error of the measurement system. [ https://doi.org/10.1351/goldbook.M03945 ]
definition source: http://purl.obolibrary.org/obo/chmo.owl
imported from: CHMO_0001685
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Mischen [chmo] @de

(Mix) [ncit]
type: Class
subclass of: process
has curation status: uncurated
definition: To bring or combine together or with something else; add as an additional element or part.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C64925
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Mischen [ncit] @de

Iodine Adsorption Number [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Menge in Gramm an adsorbiertem Iod pro Kilogramm Ruß unter definierten Bedingungen @de
definition: Number of grams of iodine adsorbed per kilogram of carbon black under specified conditions
alternative term: Jodzahl; Iodzahl @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 03.05.2022
comment: Die Eigenschaft ist eine Angabe zur Oberfläche eines Rußes. ISO 1304 beinhaltet ein Verfahren für die Bestimmung der Iodzahl. @de
comment: The property is an indication of the surface area of a carbon black. ISO 1304 contains a method for the determination of the iodine adsorption number.
label: Jodadsorptionszahl [dik] @de

Specific Surface [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Spezifische Oberfläche [dik] @de

Mass Specific Surface [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Massenbezogene spezifische Oberfläche [dik] @de

Volume Specific Surface [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Volumenbezogene spezifische Oberfläche [dik] @de

Oil Absorption Number [dik]
type: Class
subclass of: immaterial entity
has curation status: uncurated
definition: Die Ölabsorptionszahl eines Rußes steht im Zusammenhang mit den Verarbeitungs- und Vulkanisationseigenschaften von Kautschukmischungen die den Ruß enthalten @de
definition: The oil absorption number of a carbon black is related to the processing and vulcanizate properties of rubber compounds containing the carbon black
Contributor: Alexander Aschemann
language: English
identifier: ASTM D2414-12
creation date: 03.05.2022
label: Ölabsorptionszahl [dik] @de

Kinematic Viscosity [dik]
type: Class
subclass of: UO_0000256
has curation status: uncurated
definition: Als kinematische Viskosität bezeichnet man den Quotienten aus der dynamischen Viskosität des Mediums und seiner Dichte @de
definition: Kinematic viscosity is the quotient of the dynamic viscosity of the medium and its density.
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Kinematische Viskosität [dik] @de

Kinematic Viscosity [uo]
type: Class
subclass of: UO_0000256
has curation status: uncurated
definition: The ratio of the dynamic viscosity (μ) over the density of the fluid (ρ), which is noted as (length)^2/time. https://en.wikipedia.org/wiki/Viscosity#Kinematic_viscosity
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_01200023
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Kinematische Viskosität [uo] @de

Setting Point [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Erstarrungspunkt [dik] @de

Molecular Weight [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Molekulargewicht [dik] @de

Molecular Weight [mi]
type: Class
subclass of: quality
has curation status: uncurated
definition: Molecular weight in g/mol, determined from molecular formula or sequence.
definition source: http://purl.obolibrary.org/obo/mi.owl
imported from: MI 2025
Contributor: Luis Ramos
language: English
last update on: 25.08.2022
creation date: 25.08.2022
label: Molekulargewicht [mi] @de

Acid Value [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Säurezahl‎ [dik] @de

Melting Range [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Schmelzbereich‎ [dik] @de

Oil Content [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 03.05.2022
label: Öl-Gehalt‎ [dik] @de

Complex Shear Modulus [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Verhältnis von Schubspannung zu Scherdehnung, wobei jede durch eine komplexe Zahl dargestellt werden kann @de
definition: ratio of the shear stress to the shear strain, where each can be represented by a complex number
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
has_exact_synonym: G*
label: komplexer Schubmodul [dik] @de

Complex Young’s Modulus [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Verhältnis von Normalspannung zur Belastung, wobei jede durch eine komplexe Zahl dargestellt werden kann @de
definition: ratio of the normal stress to the normal strain, where each can be represented by a complex number
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
has_exact_synonym: E*
label: komplexer Young’s Modul [dik] @de

Elastic Shear Modulus [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: die Komponente einer aufgebrachten Schubspannung, welche in Phase mit der Scherdeformation ist, geteilt durch die Dehnung @de
definition: that component of an applied shear stress which is in phase with the shear strain, divided by the strain
alternative term: Schermodul @de
alternative term: storage shear modulus
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
has_exact_synonym: G'
label: Elastizitätsmodul [dik] @de

Elastic Young’s Modulus [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: die Komponente einer angewandten Normalspannung, welche in Phase mit der Normaldehnung ist, geteilt durch die Dehnung @de
definition: that component of an applied normal stress which is in phase with the normal strain, divided by the strain
alternative term: Youngscher Speichermodul @de
alternative term: storage Young’s modulus
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
has_exact_synonym: E'
label: Youngscher Elastizitätsmodul [dik] @de

Loss Shear Modulus [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: der Anteil einer aufgebrachten Schubspannung, welche 90° phasenverschoben gegenüber der Scherdeformation ist, geteilt durch die Dehnung @de
definition: that component of an applied shear stress which is in quadrature (90° out of phase) with the shear strain, divided by the strain
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
has_exact_synonym: G''
label: Verlustmodul [dik] @de

Loss Young’s Modulus [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: der Anteil einer aufgebrachten Normalspannung, welcher 90° phasenverschoben gegenüber der Normaldehnung ist, geteilt durch die Dehnung @de
definition: that component of an applied normal stress which is in quadrature (90° out of phase) with the normal strain, divided by the strain
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
has_exact_synonym: E''
label: Young’sches Verlustmodul [dik] @de

Modulus [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Maß für die Steifigkeit unter definierten Bedingungen bei Verformung @de
definition: measure of stiffness under specified conditions of deformation
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
comment: Diese Bezeichnung sollte nicht alleine verwendet werden und sollte einhergehen mit der Art der Verformung, z. B. Druck- oder Schermodul. @de
comment: The term should not be used in isolation and should be prefaced by the mode of deformation, e.g. compression modulus or shear modulus.
label: Modul [dik] @de

Tan Delta [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: Verhältnis des Verlustmoduls zum Speichermodul @de
definition: ratio of the viscous modulus to the elastic modulus
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
has_exact_synonym: tanδ
comment: Es handelt sich dabei um ein Maß für den Verlustfaktor und somit für die Energie, die durch Umwandlung in Wärme verloren geht. @de
comment: It is a measure of the loss factor and thus of the energy lost by conversion into heat.
label: Tangens delta [dik] @de

Viscometer [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Viskosimeter [dik] @de

Mooney Shearing-Disc Viscometer [dik]
type: Class
subclass of: material entity
has curation status: uncurated
alternative term: Mooney-Viskosimeter @de
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
label: Mooney-Scherscheibenviskosimeter [dik] @de

Curemeter [dik]
type: Class
subclass of: material entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Rheometer [dik] @de

Oscillating-Disc Curemeter [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Rheometertyp, bei welchem die auf die Kautschukmischung einwirkenden Kräfte durch eine in der Testprobe eingebettete schwingende Scheibe erzeugt werden, wobei sich die Probe unter Druck in einem abgedichteten Probenaufnehmer befindet @de
definition: type of curemeter in which the force applied to the rubber compound is produced by an oscillating disc embedded in a test sample which is contained under pressure in a sealed cavity
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
label: oszillierendes Scheibenrheometer [dik] @de

Rotorless Curemeter [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Typ eines Rheometers, bei welchem die Kraft, die auf die Kautschukmischung einwirkt, durch die Oszillation einer von zwei Platten erzeugt wird, die die Kammer bilden, in welcher die Testprobe eingeschlossen ist @de
definition: type of curemeter in which the force applied to the rubber compound is produced by the oscillation of one of the two dies forming the cavity in which the test sample is enclosed
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
label: rotorloser Rheometer [dik] @de

Vulcameter [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Gerät zur Messung des Fortschritts der Vulkanisation in einer Probe bei der Vulkanisationsstemperatur @de
definition: device that measures the progress of vulcanization in a test sample at the vulcanizing temperature
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
label: Vulkameter [dik] @de

Platen Press [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: Presse, die zwei oder mehrere übereinanderliegende beheizte Platten besitzt, zwischen denen die Formteile gepresst werden @de
definition: press having two or more super-imposed heated platens between which moulds are pressed
alternative term: Etagenpresse; Heizpresse @de
alternative term: daylight press
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
label: Plattenpresse [dik] @de

Platen [dik]
type: Class
subclass of: material entity
has curation status: uncurated
definition: flache Metallplatte (oder Schale), die Hitze und Druck auf ein oder mehrere Formteile überträgt, die sich in einer Presse befinden @de
definition: flat metal plate (or chest) which applies heat and pressure to one or more mould(s) in a press
Contributor: Alexander Aschemann
language: English
identifier: DIN ISO 1382:2016-07
creation date: 10.05.2022
label: Platte [dik] @de

Ethylidene Norbornene [dik]
type: Class
subclass of: material entity
has curation status: uncurated
alternative term: 2-ethylidene-5-norbornene
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
has_exact_synonym: ENB
label: Ethylidennorbornen [dik] @de

Concentration Measurement Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: An assay with the objective to produce information about the concentration of a specific substance in the material entity that is the evaluant, by physically examining it or its proxies.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Prüfung zur Konzentrationsmessung [dik] @de

Ethylene Concentration Measurement Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: A concentration measurement assay with the objective to produce information about the concentration of ethylene in the material entity that is the evaluant, by physically examining it or its proxies.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Prüfung zur Ethylen-Konzentrationsmessung [dik] @de

Ethylidene Norbornene Concentration Measurement Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: A concentration measurement assay with the objective to produce information about the concentration of ethylidene norbornene in the material entity that is the evaluant, by physically examining it or its proxies.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Prüfung zur Ethylidennorbornen-Konzentrationsmessung [dik] @de

Molecular Weight Distribution Measurement Assay [dik]
type: Class
subclass of: process
has curation status: uncurated
definition: An assay with the objective to produce information about the molecular weight distribution of the material entity that is the evaluant, by physically examining it or its proxies.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Prüfung zur Molekulargewichtsverteilung [dik] @de

Concentration Measurement Protocol [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A measurement protocol for reliably reproducing the concentration measurement assay.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Protokoll zur Konzentrationsmessung [dik] @de

Ethylene Concentration Measurement Protocol [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A concentration measurement protocol for reliably reproducing the ethylene concentration measurement assay.
Contributor: Alexander Aschemann
language: English
identifier: ASTM D3900
creation date: 21.05.2022
label: Protokoll zur Ethylen-Konzentrationsmessung [dik] @de

Ethylidene Norbornene Concentration Measurement Protocol [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A concentration measurement protocol for reliably reproducing the ethylidene norbornene concentration measurement assay.
Contributor: Alexander Aschemann
language: English
identifier: ASTM D6047
creation date: 21.05.2022
label: Protokoll zur Ethylidennorbornen-Konzentrationsmessung [dik] @de

Molecular Weight Distribution Measurement Protocol [dik]
type: Class
subclass of: plan specification
has curation status: uncurated
definition: A measurement protocol for reliably reproducing the molecular weight distribution measurement assay.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Protokoll zur Molekulargewichtsverteilung [dik] @de

Ethylene Group [dik]
type: Class
subclass of: hydrocarbylene group
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
last update on: 26.08.2022
creation date: 21.05.2022

Hydrocarbylene Group [dik]
type: Class
subclass of: organodiyl group
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022

Hydrocarbylene Group [chebi]
type: Class
subclass of: organodiyl group
has curation status: uncurated
definition: A bivalent group formed by removing two hydrogen atoms from a hydrocarbon, the free valencies of which are not engaged in a double bond.
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: hydrocarbylene group
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022

Organodiyl Group [dik]
type: Class
subclass of: organic divalent group
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022

Organodiyl Group [chebi]
type: Class
subclass of: organic divalent group
has curation status: uncurated
definition: Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s).
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: organodiyl group
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022

Organic Divalent Group [dik]
type: Class
subclass of: organic group
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022

Organic Group [dik]
type: Class
subclass of: group
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Organik-Gruppe [dik] @de

Organic Group [chebi]
type: Class
subclass of: group
has curation status: uncurated
definition: Any substituent group or skeleton containing carbon.
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: organic group
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Organik-Gruppe [chebi] @de

Group [dik]
type: Class
subclass of: chemical entity
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Gruppe [dik] @de

Group [ncit]
type: Class
subclass of: chemical entity
has curation status: uncurated
definition: Any number of entities (members) considered as a unit.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C43359
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Gruppe [ncit] @de

Group [chebi]
type: Class
subclass of: chemical entity
has curation status: uncurated
definition: A defined linked collection of atoms or a single atom within a molecular entity.
definition source: http://purl.obolibrary.org/obo/chebi.owl
imported from: group
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Gruppe [chebi] @de

Group [shacl]
type: Class
subclass of: chemical entity
has curation status: uncurated
definition: Can be used to link to a property group to indicate that a property shape belongs to a group of related property shapes.
definition source: http://www.w3.org/ns/shacl#
imported from: group
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Gruppe [shacl] @de

Percent [dik]
type: Class
subclass of: UO_0000190
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Prozent [dik] @de

Percent [uo]
type: Class
subclass of: UO_0000190
has curation status: uncurated
definition: "A dimensionless ratio unit which denotes numbers as fractions of 100." [Wikipedia:Wikipedia]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_0000187
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Prozent [uo] @de

Percent [om]
type: Class
subclass of: quality
has curation status: uncurated
definition: The percent is a unit of dimension one defined as 1/100.
definition source: http://www.ontology-of-units-of-measure.org/resource/om-2
imported from: percent
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Prozent [om] @de

Ratio [dik]
type: Class
subclass of: UO_0000186
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Verhältnis [dik] @de

Ratio [ncit]
type: Class
subclass of: UO_0000186
has curation status: uncurated
definition: Quotient of quantities of the same kind for different components within the same system.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C44256
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Verhältnis [ncit] @de

Ratio [uo]
type: Class
subclass of: UO_0000190
has curation status: uncurated
definition: "A dimensionless ratio unit which, given a pair of quantities a and b, for which b is a multiple of a, denotes b by giving the multiplier (coefficient) c for a to result in b." [UOB:LKSR]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_0010006
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Verhältnis [uo] @de

Ratio [uo]
type: Class
subclass of: UO_0000186
has curation status: uncurated
definition: "A dimensionless unit which denotes an amount or magnitude of one quantity relative to another." [Wikipedia:Wikipedia]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: UO_0000190
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Verhältnis [uo] @de

Ratio [ms]
type: Class
subclass of: quality
has curation status: uncurated
definition: A ratio is a data item which is formed with two numbers r and s is written r/s, where r is the numerator and s is the denominator. The ratio of r to s is equivalent to the quotient r/s.
definition source: http://purl.obolibrary.org/obo/ms.owl
imported from: STATO_0000184
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Verhältnis [ms] @de

Dimensionless Unit [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: dimensionslose Einheit [dik] @de

Dimensionless Unit [ms]
type: Class
subclass of: quality
has curation status: uncurated
definition: "A unit which is a standard measure of physical quantity consisting of only a numerical number without any units." [Wikipedia:Wikipedia]
definition source: http://purl.obolibrary.org/obo/ms.owl
imported from: UO_0000186
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: dimensionslose Einheit [ms] @de

Mass Percentage [dik]
type: Class
subclass of: concentration unit
has curation status: uncurated
alternative term: weight percent
Contributor: Alexander Aschemann
language: English
identifier: DIN 1310
creation date: 21.05.2022
has_exact_synonym: wt %
label: Massenanteil [dik] @de

Mass Percentage [uo]
type: Class
subclass of: concentration unit
has curation status: uncurated
definition: "A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture." [Wikipedia:Wikipedia]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: mass percentage
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Massenanteil [uo] @de

Volume Percentage [dik]
type: Class
subclass of: UO_0000205
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
has_exact_synonym: vol %
label: Volumenprozent [dik] @de

Volume Percentage [uo]
type: Class
subclass of: UO_0000205
has curation status: uncurated
definition: "A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution." [UOC:GVG]
definition source: http://purl.obolibrary.org/obo/uo.owl
imported from: volume percentage
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Volumenprozent [uo] @de

Concentration of [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Konzentration von [dik] @de

Concrentration [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: concentration of
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Konzentration [pato] @de

Concrentration [edam]
type: Class
subclass of: quality
has curation status: uncurated
definition: The concentration of a chemical compound.
definition source: http://edamontology.org
imported from: data 2140
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Konzentration [edam] @de

Concrentration [chmo]
type: Class
subclass of: quality
has curation status: uncurated
definition: Experimental method output expressing the contribution of one constituent to the composition of a mixture.
definition source: http://purl.obolibrary.org/obo/chmo.owl
imported from: CHMO_0002820
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Konzentration [chmo] @de

Concrentration [ncit]
type: Class
subclass of: quality
has curation status: uncurated
definition: The quantity of a substance per unit volume or weight; a measure of the amount of substance present in a unit amount of mixture, particularly, the amount of solute dissolved in a solvent. The amounts can be expressed as moles, masses, volumes, or parts.
definition source: http://purl.obolibrary.org/obo/ncit.owl
imported from: NCIT C41185
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Konzentration [ncit] @de

Concrentration [ecso]
type: Class
subclass of: quality
has curation status: uncurated
definition: the strength of a solution; number of molecules of a substance in a given volume
definition source: http://purl.dataone.org/odo/ECSO8.owl
imported from: ECSO_00001120
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Konzentration [ecso] @de

Molecular Quality [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: molekulare Qualität [dik] @de

Molecular Quality [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: molecular quality
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: molekulare Qualität [pato] @de

Ethylene Concentration [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: A concentration of ethylene inhering in a substance by virtue of the amount of the bearer's there is mixed with ethylene.
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Ethylen-Konzentration [dik] @de

Ethylidene Norbornene Concentration [dik]
type: Class
subclass of: quality
has curation status: uncurated
definition: A concentration of ethylidene norbornene inhering in a substance by virtue of the amount of the bearer's there is mixed with ethylidene norbornene.
alternative term: ENB-concentration
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Ethylidennorbornen-Konzentration [dik] @de

Ethylidene Group [dik]
type: Class
subclass of: organodiyl group
has curation status: uncurated
definition source: http://purl.obolibrary.org/obo/CHEBI_29853
imported from: CHEBI_29853
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Ethylidengruppe [dik] @de

Quality of a Solid [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: Qualität eines Festkörpers [dik] @de

Quality of a Solid [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: quality of a solid
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: Qualität eines Festkörpers [pato] @de

Optical Quality [dik]
type: Class
subclass of: quality
has curation status: uncurated
Contributor: Alexander Aschemann
language: English
creation date: 21.05.2022
label: optische Qualität [dik] @de

Optical Quality [pato]
type: Class
subclass of: quality
has curation status: uncurated
definition: An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
definition source: http://purl.obolibrary.org/obo/pato.owl
imported from: optical quality
Contributor: Luis Ramos
language: English
last update on: 26.08.2022
creation date: 26.08.2022
label: optische Qualität [dik] @de

example to be eventually removed
type: NamedIndividual
type: curation status specification
IAO_0000111: example to be eventually removed

failed exploratory term
type: NamedIndividual
type: obsolescence reason specification
IAO_0000111: failed exploratory term
definition: The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
IAO_0000117: Person:Alan Ruttenberg

metadata complete
type: NamedIndividual
type: curation status specification
IAO_0000111: metadata complete
definition: Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.

organizational term
type: NamedIndividual
type: curation status specification
IAO_0000111: organizational term
definition: Term created to ease viewing/sort terms for development purpose, and will not be included in a release
IAO_0000117: PERSON:Alan Ruttenberg

ready for release
type: NamedIndividual
type: curation status specification
IAO_0000111: ready for release
definition: Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."

metadata incomplete
type: NamedIndividual
type: curation status specification
IAO_0000111: metadata incomplete
definition: Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.

uncurated
type: NamedIndividual
type: curation status specification
IAO_0000111: uncurated
definition: Nothing done yet beyond assigning a unique class ID and proposing a preferred term.

pending final vetting
type: NamedIndividual
type: curation status specification
IAO_0000111: pending final vetting
definition: All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.

placeholder removed
type: NamedIndividual
type: obsolescence reason specification
IAO_0000111: placeholder removed

terms merged
type: NamedIndividual
type: obsolescence reason specification
IAO_0000111: terms merged
IAO_0000116: An editor note should explain what were the merged terms and the reason for the merge.

term imported
type: NamedIndividual
type: obsolescence reason specification
IAO_0000111: term imported
IAO_0000116: This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.

term split
type: NamedIndividual
type: obsolescence reason specification
IAO_0000111: term split
IAO_0000116: This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.

universal
type: NamedIndividual
type: denotator type
IAO_0000111: universal
IAO_0000116: Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
IAO_0000117: Alan Ruttenberg
definition source: A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf

defined class
type: NamedIndividual
type: denotator type
IAO_0000111: defined class
definition: A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
IAO_0000116: "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.
IAO_0000117: Alan Ruttenberg

named class expression
type: NamedIndividual
type: denotator type
IAO_0000111: named class expression
definition: A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
IAO_0000116: named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions
IAO_0000117: Alan Ruttenberg

to be replaced with external ontology term
type: NamedIndividual
type: curation status specification
IAO_0000111: to be replaced with external ontology term
definition: Terms with this status should eventually replaced with a term from another ontology.
IAO_0000117: Alan Ruttenberg
definition source: group:OBI

requires discussion
type: NamedIndividual
type: curation status specification
IAO_0000111: requires discussion
definition: A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
IAO_0000117: Alan Ruttenberg
definition source: group:OBI

Transformation-ML
type: NamedIndividual
type: data format specification
IAO_0000111: Transformation-ML
example of usage: Transformation-ML file describing parameter transformations used in a GvHD experiment.
has curation status: pending final vetting
definition: Transformation-ML is a format standard of a digital entity that is conformant with the Transformation-ML standard.(http://wiki.ficcs.org/ficcs/Transformation-ML?action=AttachFile&do=get&target=Transformation-ML_v1.0.26.pdf)
IAO_0000117: person:Jennifer Fostel

ACS
type: NamedIndividual
type: data format specification
IAO_0000111: ACS
example of usage: d06.acs, ACS1.0 data file of well D06 of plate 2 of part 1 of a GvHD experiment.
has curation status: pending final vetting
definition: ACS is a format standard of a digital entity that is conformant with the Analytical Cytometry Standard. (http://www.isac-net.org/content/view/607/150/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.isac-net.org/content/view/607/150/

XML
type: NamedIndividual
type: data format specification
IAO_0000111: XML
example of usage: RDF/XML file, OWL file, Compensation-ML file, WSDL document, SVG document
has curation status: pending final vetting
definition: XML is a format standard of a digital entity that is conformant with the W3C Extensible Markup Language Recommendation.(http://www.w3.org/XML/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.w3.org/XML/

RDF
type: NamedIndividual
type: data format specification
IAO_0000111: RDF
example of usage: A FOAF file, a SKOS file, an OWL file.
has curation status: pending final vetting
definition: RDF is a format standard of a digital entity that is conformant with the W3C Resource Description Framework RDF/XML Syntax specification.(http://www.w3.org/RDF/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.w3.org/RDF/

zip
type: NamedIndividual
type: data format specification
IAO_0000111: zip
example of usage: MagicDraw MDZIP archive, Java JAR file.
has curation status: pending final vetting
definition: zip is a format standard of a digital entity that is conformant with the PKWARE .ZIP file format specification (http://www.pkware.com/index.php?option=com_content&task=view&id=59&Itemid=103/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.pkware.com/index.php?option=com_content&task=view&id=59&Itemid=103/

tar
type: NamedIndividual
type: data format specification
IAO_0000111: tar
example of usage: Example.tar file.
has curation status: pending final vetting
definition: tar is a format standard of a digital entity that is conformant with the tape archive file format as standardized by POSIX.1-1998, POSIX.1-2001, or any other tar format compliant with the GNU tar specification. (http://www.gnu.org/software/tar/manual/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.gnu.org/software/tar/manual/

FCS
type: NamedIndividual
type: data format specification
IAO_0000111: FCS
example of usage: d01.fcs, FCS3 data file of well D06 of plate 2 of part 1 of a GvHD experiment.
has curation status: pending final vetting
definition: FCS is a format standard of a digital entity that is conformant with the Flow Cytometry Data File Standard.(http://www.fcspress.com/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.fcspress.com/

Compensation-ML
type: NamedIndividual
type: data format specification
IAO_0000111: Compensation-ML
example of usage: compfoo.xml, Compensation-ML file describing compensation used in a GvHD experiment
has curation status: pending final vetting
definition: Compensation-ML is a format standard of a digital entity that is conformant with the Compensation-ML standard. (http://wiki.ficcs.org/ficcs/Compensation-ML?action=AttachFile&do=get&target=Compensation-ML_v1.0.24.pdf)
IAO_0000117: person:Jennifer Fostel

Gating-ML
type: NamedIndividual
type: data format specification
IAO_0000111: Gating-ML
example of usage: foogate.xml, Gating-ML file describing gates used in a GvHD experiment.
has curation status: pending final vetting
definition: Gating-ML is a format standard of a digital entity that is conformant with the Gating-ML standard. (http://www.flowcyt.org/gating/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.flowcyt.org/gating/

OWL
type: NamedIndividual
type: data format specification
IAO_0000111: OWL
example of usage: OBI ontology file, Basic Formal Ontology file, BIRNLex file, BioPAX file.
has curation status: pending final vetting
definition: OWL is a format standard of a digital entity that is conformant with the W3C Web Ontology Language specification.(http://www.w3.org/2004/OWL/)
IAO_0000117: person:Jennifer Fostel
definition source: web-page:http://www.w3.org/2004/OWL/

Affymetrix
type: NamedIndividual
type: manufacturer
type: material supplier
IAO_0000111: Affymetrix
example of usage: Affymetrix supplied microarray
has curation status: metadata incomplete
definition: An organization which supplies technology, tools and protocols for use in high throughput applications

Thermo
type: NamedIndividual
type: manufacturer
IAO_0000111: Thermo
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

Waters
type: NamedIndividual
type: manufacturer
IAO_0000111: Waters
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

BIO-RAD
type: NamedIndividual
type: manufacturer
IAO_0000111: BIO-RAD
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

GenePattern hierarchical clustering
type: NamedIndividual
type: hierarchical clustering
IAO_0000111: GenePattern hierarchical clustering
has curation status: metadata incomplete
IAO_0000117: James Malone

Ambion
type: NamedIndividual
type: manufacturer
IAO_0000111: Ambion
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

Helicos
type: NamedIndividual
type: manufacturer
IAO_0000111: Helicos
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

Roche
type: NamedIndividual
type: manufacturer
IAO_0000111: Roche
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

Illumina
type: NamedIndividual
type: manufacturer
IAO_0000111: Illumina
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

GenePattern PCA
type: NamedIndividual
type: principal components analysis dimensionality reduction
IAO_0000111: GenePattern PCA
has curation status: metadata incomplete

GenePattern module SVM
type: NamedIndividual
type: GenePattern software
is about: GenePattern SVM
IAO_0000111: GenePattern module SVM
has curation status: metadata incomplete
definition: GenePattern module SVM is a GenePattern software module which is used to run a support vector machine data transformation.
IAO_0000117: James Malone
IAO_0000117: Ryan Brinkman

GenePattern k-nearest neighbors
type: NamedIndividual
type: k-nearest neighbors
IAO_0000111: GenePattern k-nearest neighbors
has curation status: metadata incomplete
IAO_0000117: James Malone

GenePattern LOOCV
type: NamedIndividual
type: leave one out cross validation method
IAO_0000111: GenePattern LOOCV
has curation status: metadata incomplete

GenePattern k-means clustering
type: NamedIndividual
type: k-means clustering
IAO_0000111: GenePattern k-means clustering
has curation status: metadata incomplete
IAO_0000117: James Malone

Agilent
type: NamedIndividual
type: manufacturer
IAO_0000111: Agilent
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

GenePattern module KMeansClustering
type: NamedIndividual
type: GenePattern software
is about: GenePattern k-means clustering
IAO_0000111: GenePattern module KMeansClustering
has curation status: metadata complete
definition: GenePattern module KMeansClustering is a GenePattern software module which is used to perform a k Means clustering data transformation.
IAO_0000117: James Malone
definition source: PERSON: James Malone

GenePattern CART
type: NamedIndividual
type: CART
IAO_0000111: GenePattern CART
has curation status: metadata incomplete
IAO_0000117: James Malone

GenePattern module CARTXValidation
type: NamedIndividual
type: GenePattern software
is about: GenePattern LOOCV
is about: GenePattern CART
IAO_0000111: GenePattern module CARTXValidation
has curation status: metadata incomplete
definition: GenePattern module CARTXValidation is a GenePattern software module which uses a CART decision tree induction with a leave one out cross validation data transformations.

Li-Cor
type: NamedIndividual
type: manufacturer
IAO_0000111: Li-Cor
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

Bruker Corporation
type: NamedIndividual
type: manufacturer
IAO_0000111: Bruker Corporation
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

GenePattern module KNNXValidation
type: NamedIndividual
type: GenePattern software
IAO_0000111: GenePattern module KNNXValidation
has curation status: metadata complete
definition: GenePattern module KNNXValidation is a GenePattern software module which uses a k-nearest neighbours clustering with a leave one out cross validation data transformations.
IAO_0000117: James Malone
definition source: PERSON: James Malone

GenePattern module PeakMatch
type: NamedIndividual
type: GenePattern software
is about: GenePattern peak matching
IAO_0000111: GenePattern module PeakMatch
has curation status: metadata incomplete

GenePattern module KNN
type: NamedIndividual
type: GenePattern software
is about: GenePattern k-nearest neighbors
IAO_0000111: GenePattern module KNN
has curation status: metadata incomplete
definition: GenePattern module KNN is a GenePattern software module which perform a k-nearest neighbors data transformation.
IAO_0000117: James Malone

GenePattern module HierarchicalClustering
type: NamedIndividual
type: GenePattern software
is about: GenePattern hierarchical clustering
IAO_0000111: GenePattern module HierarchicalClustering
has curation status: metadata incomplete
definition: GenePattern module HierarchicalClustering is a GenePattern software module which is used to perform a hierarchical clustering data transformation.
IAO_0000117: James Malone
IAO_0000117: PERSON: James Malone

GenePattern SVM
type: NamedIndividual
type: support vector machine
IAO_0000111: GenePattern SVM
has curation status: metadata incomplete
IAO_0000117: James Malone

Applied Biosystems
type: NamedIndividual
type: manufacturer
IAO_0000111: Applied Biosystems
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

GenePattern module PCA
type: NamedIndividual
type: GenePattern software
is about: GenePattern PCA
IAO_0000111: GenePattern module PCA
has curation status: metadata complete
definition: GenePattern module PCA is a GenePattern software module which is used to perform a principal components analysis dimensionality reduction data transformation.
IAO_0000117: James Malone
definition source: PERSON: James Malone

GenePattern peak matching
type: NamedIndividual
type: peak matching
IAO_0000111: GenePattern peak matching
has curation status: metadata incomplete
IAO_0000117: James Malone
IAO_0000117: Ryan Brinkman

Bruker Daltonics
type: NamedIndividual
type: manufacturer
IAO_0000111: Bruker Daltonics
has curation status: metadata incomplete
IAO_0000117: Philippe Rocca-Serra

GenePattern HeatMapViewer data visualization
type: NamedIndividual
type: clustered data visualization
IAO_0000111: GenePattern HeatMapViewer data visualization
has curation status: metadata incomplete
definition: The GenePattern process of generating Heat Maps from clustered data.
IAO_0000117: James Malone

GenePattern HierarchicalClusteringViewer data visualization
type: NamedIndividual
type: clustered data visualization
IAO_0000111: GenePattern HierarchicalClusteringViewer data visualization
has curation status: metadata incomplete
definition: The GenePattern process of generating hierarchical clustering visualization from clustered data.
IAO_0000117: James Malone

GenePattern module HeatMapViewer
type: NamedIndividual
type: GenePattern software
is about: GenePattern HeatMapViewer data visualization
IAO_0000111: GenePattern module HeatMapViewer
has curation status: metadata incomplete
definition: A GenePattern software module which is used to generate a heatmap view of data.
IAO_0000117: James Malone

GenePattern module HierarchicalClusteringViewer
type: NamedIndividual
type: GenePattern software
is about: GenePattern HierarchicalClusteringViewer data visualization
IAO_0000111: GenePattern module HierarchicalClusteringViewer
has curation status: metadata incomplete
definition: A GenePattern software module which is used to generate a view of data that has been hierarchically clustered.
IAO_0000117: James Malone

Sysmex Corporation, Kobe, Japan
type: NamedIndividual
type: manufacturer
IAO_0000111: Sysmex Corporation, Kobe, Japan
has curation status: metadata complete
definition source: WEB:http://www.sysmex.com/@2009/08/06

U.S. Food and Drug Administration
type: NamedIndividual
type: regulatory agency
IAO_0000111: U.S. Food and Drug Administration
has curation status: metadata incomplete
alternative term: FDA

right handed
type: NamedIndividual
type: categorical label
IAO_0000111: right handed
has curation status: metadata incomplete

ambidexterous
type: NamedIndividual
type: categorical label
IAO_0000111: ambidexterous
has curation status: metadata incomplete

left handed
type: NamedIndividual
type: categorical label
IAO_0000111: left handed
has curation status: metadata incomplete

Edingburgh handedness inventory
type: NamedIndividual
type: questionnaire
IAO_0000111: Edingburgh handedness inventory
has curation status: metadata complete
definition: The Edinburgh Handedness Inventory is a set of questions used to assess the dominance of a person's right or left hand in everyday activities.
IAO_0000117: PERSON:Alan Ruttenberg
IAO_0000117: PERSON:Jessica Turner
definition source: PMID:5146491#Oldfield, R.C. (1971). The assessment and analysis of handedness: The Edinburgh inventory. Neuropsychologia, 9, 97-113
definition source: WEB:http://www.cse.yorku.ca/course_archive/2006-07/W/4441/EdinburghInventory.html

eBioscience
type: NamedIndividual
type: manufacturer
IAO_0000111: eBioscience
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.ebioscience.com/@2011/04/11

Cytopeia
type: NamedIndividual
type: manufacturer
IAO_0000111: Cytopeia
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.cytopeia.com/@2011/04/11

Exalpha Biological
type: NamedIndividual
type: manufacturer
IAO_0000111: Exalpha Biological
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.exalpha.com/@2011/04/11

Apogee Flow Systems
type: NamedIndividual
type: manufacturer
IAO_0000111: Apogee Flow Systems
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.apogeeflow.com/@2011/04/11

Exbio Antibodies
type: NamedIndividual
type: manufacturer
IAO_0000111: Exbio Antibodies
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.exbio.cz/@2011/04/11

Becton Dickinson (BD Biosciences)
type: NamedIndividual
type: manufacturer
IAO_0000111: Becton Dickinson (BD Biosciences)
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.bdbiosciences.com/@2011/04/11

Dako Cytomation
type: NamedIndividual
type: manufacturer
IAO_0000111: Dako Cytomation
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.dakousa.com/@2011/04/11

Millipore
type: NamedIndividual
type: manufacturer
IAO_0000111: Millipore
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.guavatechnologies.com/@2011/04/11

Antigenix
type: NamedIndividual
type: manufacturer
IAO_0000111: Antigenix
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.antigenix.com/@2011/04/11

Partec
type: NamedIndividual
type: manufacturer
IAO_0000111: Partec
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.partec.de/@2011/04/11

Beckman Coulter
type: NamedIndividual
type: manufacturer
IAO_0000111: Beckman Coulter
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.beckmancoulter.com/@2011/04/11

Advanced Instruments Inc. (AI Companies)
type: NamedIndividual
type: manufacturer
IAO_0000111: Advanced Instruments Inc. (AI Companies)
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.aicompanies.com/@2011/04/11

Miltenyi Biotec
type: NamedIndividual
type: manufacturer
IAO_0000111: Miltenyi Biotec
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.miltenyibiotec.com/@2011/04/11

AES Chemunex
type: NamedIndividual
type: manufacturer
IAO_0000111: AES Chemunex
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.aeschemunex.com/@2011/04/11

Bentley Instruments
type: NamedIndividual
type: manufacturer
IAO_0000111: Bentley Instruments
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://bentleyinstruments.com/@2011/04/11

Invitrogen
type: NamedIndividual
type: manufacturer
IAO_0000111: Invitrogen
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.invitrogen.com/@2011/04/11

Luminex
type: NamedIndividual
type: manufacturer
IAO_0000111: Luminex
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.luminexcorp.com/@2011/04/11

CytoBuoy
type: NamedIndividual
type: manufacturer
IAO_0000111: CytoBuoy
has curation status: metadata incomplete
IAO_0000117: Karin Breuer
definition source: WEB:http://www.cytobuoy.com/@2011/04/11

Nimblegen
type: NamedIndividual
type: manufacturer
IAO_0000111: Nimblegen
has curation status: metadata incomplete
definition: An organization that focuses on manufacturing target enrichment probe pools for DNA sequencing.
IAO_0000117: Person: Jie Zheng

Pacific Biosciences
type: NamedIndividual
type: manufacturer
IAO_0000111: Pacific Biosciences
has curation status: metadata incomplete
definition: An organization that supplies tools for studying the synthesis and regulation of DNA, RNA and protein. It developed a powerful technology platform called single molecule real-time (SMRT) technology which enables real-time analysis of biomolecules with single molecule resolution.
IAO_0000117: Person: Jie Zheng

NanoString Technologies
type: NamedIndividual
type: manufacturer
IAO_0000111: NanoString Technologies
has curation status: metadata incomplete
definition: An organization that supplies life science tools for translational research and molecular diagnostics based on a novel digital molecular barcoding technology. The NanoString platform can provide simple, multiplexed digital profiling of single molecules.

Thermo Fisher Scientific
type: NamedIndividual
type: organization
IAO_0000111: Thermo Fisher Scientific
has curation status: metadata complete
definition: An organization that is an American multinational, biotechnology product development company, created in 2006 by the merger of Thermo Electron and Fisher Scientific.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://en.wikipedia.org/wiki/Thermo_Fisher_Scientific

G1: Well differentiated
type: NamedIndividual
type: histologic grade according to AJCC 7th edition
IAO_0000111: G1: Well differentiated
has curation status: metadata complete
definition: A histologic grade according to AJCC 7th edition indicating that the tumor cells and the organization of the tumor tissue appear close to normal.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G1
definition source: https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet
IAO_0000234: NCI BBRB

G2: Moderately differentiated
type: NamedIndividual
type: histologic grade according to AJCC 7th edition
IAO_0000111: G2: Moderately differentiated
has curation status: metadata complete
definition: A histologic grade according to AJCC 7th edition indicating that the tumor cells are moderately differentiated and reflect an intermediate grade.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G2
definition source: https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet
IAO_0000234: NCI BBRB

G3: Poorly differentiated
type: NamedIndividual
type: histologic grade according to AJCC 7th edition
IAO_0000111: G3: Poorly differentiated
has curation status: metadata complete
definition: A histologic grade according to AJCC 7th edition indicating that the tumor cells are poorly differentiated and do not look like normal cells and tissue.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G3
definition source: https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet
IAO_0000234: NCI BBRB

G4: Undifferentiated
type: NamedIndividual
type: histologic grade according to AJCC 7th edition
IAO_0000111: G4: Undifferentiated
has curation status: metadata complete
definition: A histologic grade according to AJCC 7th edition indicating that the tumor cells are undifferentiated and do not look like normal cells and tissue.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G4
definition source: https://www.cancer.gov/about-cancer/diagnosis-staging/prognosis/tumor-grade-fact-sheet
IAO_0000234: NCI BBRB

G1 (Fuhrman)
type: NamedIndividual
type: histologic grade according to the Fuhrman Nuclear Grading System
IAO_0000111: G1 (Fuhrman)
has curation status: metadata complete
definition: A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei are round, uniform, approximately 10um and that nucleoli are inconspicuous or absent.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Grade 1
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

G2 (Fuhrman)
type: NamedIndividual
type: histologic grade according to the Fuhrman Nuclear Grading System
IAO_0000111: G2 (Fuhrman)
has curation status: metadata complete
definition: A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei are slightly irregular, approximately 15um and nucleoli are evident.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Grade 2
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

G3 (Fuhrman)
type: NamedIndividual
type: histologic grade according to the Fuhrman Nuclear Grading System
IAO_0000111: G3 (Fuhrman)
has curation status: metadata complete
definition: A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei are very irregular, approximately 20um and nucleoli large and prominent.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Grade 3
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

G4 (Fuhrman)
type: NamedIndividual
type: histologic grade according to the Fuhrman Nuclear Grading System
IAO_0000111: G4 (Fuhrman)
has curation status: metadata complete
definition: A histologic grade according to the Fuhrman Nuclear Grading System indicating that nuclei arei bizarre and multilobulated, 20um or greater and nucleoli are prominent and chromatin clumped.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Grade 4
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

Low grade ovarian tumor
type: NamedIndividual
type: histologic grade for ovarian tumor according to a two-tier grading system
IAO_0000111: Low grade ovarian tumor
has curation status: metadata complete
definition: A histologic grade for ovarian tumor according to a two-tier grading system indicating that the tumor is low grade.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Low grade
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

High grade ovarian tumor
type: NamedIndividual
type: histologic grade for ovarian tumor according to a two-tier grading system
IAO_0000111: High grade ovarian tumor
has curation status: metadata complete
definition: A histologic grade for ovarian tumor according to a two-tier grading system indicating that the tumor is high grade.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: High grade
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

G1 (WHO)
type: NamedIndividual
type: histologic grade for ovarian tumor according to the World Health Organization
IAO_0000111: G1 (WHO)
has curation status: metadata complete
definition: A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is well differentiated.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G1
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

G2 (WHO)
type: NamedIndividual
type: histologic grade for ovarian tumor according to the World Health Organization
IAO_0000111: G2 (WHO)
has curation status: metadata complete
definition: A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is moderately differentiated.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G2
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

G3 (WHO)
type: NamedIndividual
type: histologic grade for ovarian tumor according to the World Health Organization
IAO_0000111: G3 (WHO)
has curation status: metadata complete
definition: A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is poorly differentiated.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G3
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

G4 (WHO)
type: NamedIndividual
type: histologic grade for ovarian tumor according to the World Health Organization
IAO_0000111: G4 (WHO)
has curation status: metadata complete
definition: A histologic grade for ovarian tumor according to the World Health Organization indicating that the tumor is undifferentiated.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: G4
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

pT0 (colon)
type: NamedIndividual
type: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pT0 (colon)
has curation status: metadata complete
definition: A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that there is no evidence of primary tumor.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/
IAO_0000234: NCI BBRB

pTis (colon)
type: NamedIndividual
type: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pTis (colon)
has curation status: metadata complete
definition: A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating carcinoma in situ (intraepithelial or invasion of lamina propria).
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/
IAO_0000234: NCI BBRB

pT1 (colon)
type: NamedIndividual
type: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pT1 (colon)
has curation status: metadata complete
definition: A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor invades submucosa.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/
IAO_0000234: NCI BBRB

pT2 (colon)
type: NamedIndividual
type: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pT2 (colon)
has curation status: metadata complete
definition: A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor invades muscularis propria.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/
IAO_0000234: NCI BBRB

pT3 (colon)
type: NamedIndividual
type: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pT3 (colon)
has curation status: metadata complete
definition: A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor invades subserosa or into non-peritionealized pericolic or perirectal tissues.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/
IAO_0000234: NCI BBRB

pT4a (colon)
type: NamedIndividual
type: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pT4a (colon)
has curation status: metadata complete
definition: A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor perforates visceral peritoneum.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/
IAO_0000234: NCI BBRB

pT4b (colon)
type: NamedIndividual
type: pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pT4b (colon)
has curation status: metadata complete
definition: A pathologic primary tumor stage for colon and rectum according to AJCC 7th edition indicating that the tumor directly invades other organs or structures.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_t/
IAO_0000234: NCI BBRB

pT0 (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT0 (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that there is no evidence of primary tumor.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pTis (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pTis (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating carcinoma in situ.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT1 (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT1 (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is 3 cm or less in greatest dimension, surrounded by lung or visceral pleura without bronchoscopic evidence of invasion more proximal than the lobar bronchus (i.e., not in the main bronchus).
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT1a (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT1a (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is 2 cm or less in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT1b (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT1b (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 2 cm but not more than 3 cm in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT2 (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT2 (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 3 cm but not more than 7 cm or the tumor has any of the following features: involves main bronchus, 2 cm or more distal to the carina, invades visceral pleura, associated with atelectasis or obstructive pneumonitis that extends to the hilar region but does not involve the entire lung.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT2a (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT2a (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 3 cm but not more than 5 cm in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT2b (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT2b (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 5 cm but not more than 7 cm in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT3 (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT3 (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor is more than 7 cm or one that directly invades any of: parietal pleura, chest wall (including superior sulcus tumors), diaphragm, phrenic nerve, mediastinal pleura, parietal pericardiu or the tumor is in the main bronchus less than 2 cm distal to the carina but without involvement of the carina or there is associated atelectasis or obstructive pneumonitis of the entire lung or there is separate tumor nodule(s) in the same lobe as the primary.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT4 (lung)
type: NamedIndividual
type: pathologic primary tumor stage for lung according to AJCC 7th edition
IAO_0000111: pT4 (lung)
has curation status: metadata complete
definition: A pathologic primary tumor stage for lung according to AJCC 7th edition indicating that the tumor of any size that invades any of the following: mediastinum, heart, great vessels, trachea, recurrent laryngeal nerve, esophagus, vertebral body, carina or there is separate tumor nodule(s) in a different ipsilateral lobe to that of the primary.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_t/
IAO_0000234: NCI BBRB

pT0 (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT0 (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that there is no evidence of primary tumor.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT1 (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT1 (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is 7 cm or less in greatest dimension and limited to the kidney.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT1a (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT1a (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is 4 cm or less.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT1b (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT1b (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 4 cm but not more than 7 cm.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT2 (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT2 (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 7 cm in greatest dimension and limited to the kidney.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT2a (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT2a (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 7 cm but not more than 10 cm.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT2b (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT2b (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor is more than 10 cm and limited to the kidney.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT3 (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT3 (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor extends into major veins or perinephric tissues but not into the ipsilateral adrenal gland and not beyond the Gerota fascia.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT3a (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT3a (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor grossly extends into the renal vein or its segmental (muscle containing) branches, or the tumor invades perirenal and/or renal sinus fat (peripelvic) fat but not beyond Gerota fascia.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT3b (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT3b (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor grossly extends into vena cava below diaphragm.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT3c (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT3c (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor grossly extends into vena cava above the diaphragm or Invades the wall of the vena cava.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT4 (kidney)
type: NamedIndividual
type: pathologic primary tumor stage for kidney according to AJCC 7th edition
IAO_0000111: pT4 (kidney)
has curation status: metadata complete
definition: A pathologic primary tumor stage for kidney according to AJCC 7th edition indicating that the tumor invades beyond Gerota fascia (including contiguous extension into the ipsilateral adrenal gland).
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_t/
IAO_0000234: NCI BBRB

pT0 (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT0 (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that there is no evidence of primary tumor.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT1 (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT1 (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to the ovaries (one or both).
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT1a (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT1a (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to one ovary; capsule intact, no tumor on ovarian surface and no malignant cells in ascites or peritoneal washings.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT1b (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT1b (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to both ovaries; capsule intact, no tumor on ovarian surface and no malignant cells in ascites or peritoneal washings.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT1c (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT1c (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor is limited to one or both ovaries with capsule ruptured, tumor on ovarian surface, or malignant cells in ascites or peritoneal washings.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT2 (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT2 (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor involves one or both ovaries with pelvic extension.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT2a (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT2a (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has extension and/or implants on uterus and/or tube(s) and no malignant cells in ascites or peritoneal washings.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT2b (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT2b (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has extension to other pelvic tissues and no malignant cells in ascites or peritoneal washings.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT2c (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT2c (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has pelvic extension with malignant cells in ascites or peritoneal washings.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT3 (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT3 (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor involves one or both ovaries with microscopically confirmed peritoneal metastasis outside the pelvis and/or regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT3a (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT3a (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has microscopic peritoneal metastasis beyond pelvis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT3b (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT3b (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has macroscopic peritoneal, metastatasis beyond pelvis, 2 cm or less in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pT3c (ovary)
type: NamedIndividual
type: pathologic primary tumor stage for ovary according to AJCC 7th edition
IAO_0000111: pT3c (ovary)
has curation status: metadata complete
definition: A pathologic primary tumor stage for ovary according to AJCC 7th edition indicating that the tumor has peritoneal metastasis beyond pelvis, more than 2 cm in greatest dimension and/or regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_t/
IAO_0000234: NCI BBRB

pN0 (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN0 (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating no regional lymph node metastsis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN1 (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN1 (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 1-3 regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN1a (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN1a (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 1 regional lymph node.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN1b (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN1b (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 2-3 regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN1c (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN1c (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating tumor deposit(s), i.e., satellites in the subserosa, or in non-peritonealized pericolic or perirectal soft tissue without regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN2 (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN2 (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 4 or more regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN2a (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN2a (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 4 to 6 regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN2b (colon)
type: NamedIndividual
type: pathologic lymph node stage for colon and rectum according to AJCC 7th edition
IAO_0000111: pN2b (colon)
has curation status: metadata complete
definition: A pathologic lymph node stage for colon and rectum according to AJCC 7th edition indicating metastasis in 7 or more regional lymph nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_n/
IAO_0000234: NCI BBRB

pN0 (lung)
type: NamedIndividual
type: pathologic lymph node stage for lung according to AJCC 7th edition
IAO_0000111: pN0 (lung)
has curation status: metadata complete
definition: A pathologic lymph node stage for lung according to AJCC 7th edition indicating no regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/
IAO_0000234: NCI BBRB

pN1 (lung)
type: NamedIndividual
type: pathologic lymph node stage for lung according to AJCC 7th edition
IAO_0000111: pN1 (lung)
has curation status: metadata complete
definition: A pathologic lymph node stage for lung according to AJCC 7th edition indicating metastasis in ipsilateral peribronchial and/or ipsilateral hilar lymph nodes and intrapulmonary nodes, including involvement by direct extension.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/
IAO_0000234: NCI BBRB

pN2 (lung)
type: NamedIndividual
type: pathologic lymph node stage for lung according to AJCC 7th edition
IAO_0000111: pN2 (lung)
has curation status: metadata complete
definition: A pathologic lymph node stage for lung according to AJCC 7th edition indicating metastasis in ipsilateral mediastinal and/or subcarinal lymph node(s).
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/
IAO_0000234: NCI BBRB

pN3 (lung)
type: NamedIndividual
type: pathologic lymph node stage for lung according to AJCC 7th edition
IAO_0000111: pN3 (lung)
has curation status: metadata complete
definition: A pathologic lymph node stage for lung according to AJCC 7th edition indicating metastasis in contralateral mediastinal, contralateral hilar, ipsilateral or contralateral scalene, or supraclavicular lymph node(s).
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_n/
IAO_0000234: NCI BBRB

pN0 (kidney)
type: NamedIndividual
type: pathologic lymph node stage for kidney according to AJCC 7th edition
IAO_0000111: pN0 (kidney)
has curation status: metadata complete
definition: A pathologic lymph node stage for kidney according to AJCC 7th edition indicating that there is no regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_n/
IAO_0000234: NCI BBRB

pN1 (kidney)
type: NamedIndividual
type: pathologic lymph node stage for kidney according to AJCC 7th edition
IAO_0000111: pN1 (kidney)
has curation status: metadata complete
definition: A pathologic lymph node stage for kidney according to AJCC 7th edition indicating that there is regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_n/
IAO_0000234: NCI BBRB

pN0 (ovary)
type: NamedIndividual
type: pathologic lymph node stage for ovary according to AJCC 7th edition
IAO_0000111: pN0 (ovary)
has curation status: metadata complete
definition: A pathologic lymph node stage for ovary according to AJCC 7th edition indicating that there is no regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_n/
IAO_0000234: NCI BBRB

pN1 (ovary)
type: NamedIndividual
type: pathologic lymph node stage for ovary according to AJCC 7th edition
IAO_0000111: pN1 (ovary)
has curation status: metadata complete
definition: A pathologic lymph node stage for ovary according to AJCC 7th edition indicating that there is regional lymph node metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_n/
IAO_0000234: NCI BBRB

cM0 (colon)
type: NamedIndividual
type: pathologic distant metastases stage for colon according to AJCC 7th edition
IAO_0000111: cM0 (colon)
has curation status: metadata complete
definition: A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that there are no symptoms or signs of distant metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://en.wikipedia.org/wiki/Cancer_staging#Pathological_M_Categorization_.28cM_and_pM.29
IAO_0000234: NCI BBRB

cM1 (colon)
type: NamedIndividual
type: pathologic distant metastases stage for colon according to AJCC 7th edition
IAO_0000111: cM1 (colon)
has curation status: metadata complete
definition: A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that there is clinical evidence of distant metastases by history, physical examination, imaging studies, or invasive procedures, but without microscopic evidence of the presumed distant metastases.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://en.wikipedia.org/wiki/Cancer_staging#Pathological_M_Categorization_.28cM_and_pM.29
IAO_0000234: NCI BBRB

cM1a (colon)
type: NamedIndividual
type: pathologic distant metastases stage for colon according to AJCC 7th edition
IAO_0000111: cM1a (colon)
has curation status: metadata complete
definition: A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is confined to one organ based on clinical assessment.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/
IAO_0000234: NCI BBRB

cM1b (colon)
type: NamedIndividual
type: pathologic distant metastases stage for colon according to AJCC 7th edition
IAO_0000111: cM1b (colon)
has curation status: metadata complete
definition: A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is in more than one organ or the peritoneum based on clinical assessment.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/
IAO_0000234: NCI BBRB

pM1 (colon)
type: NamedIndividual
type: pathologic distant metastases stage for colon according to AJCC 7th edition
IAO_0000111: pM1 (colon)
has curation status: metadata complete
definition: A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that there is microscopic evidence confirming distant metastatic disease.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/
IAO_0000234: NCI BBRB

pM1a (colon)
type: NamedIndividual
type: pathologic distant metastases stage for colon according to AJCC 7th edition
IAO_0000111: pM1a (colon)
has curation status: metadata complete
definition: A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is confined to one organ and histologically confirmed.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/
IAO_0000234: NCI BBRB

pM1b (colon)
type: NamedIndividual
type: pathologic distant metastases stage for colon according to AJCC 7th edition
IAO_0000111: pM1b (colon)
has curation status: metadata complete
definition: A pathologic distant metastases stage for colon according to AJCC 7th edition indicating that metastasis is in more than one organ or the peritoneum and histologically confirmed.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/colon/path_m/
IAO_0000234: NCI BBRB

cM0 (lung)
type: NamedIndividual
type: pathologic distant metastases stage for lung according to AJCC 7th edition
IAO_0000111: cM0 (lung)
has curation status: metadata complete
definition: A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is no distant metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/
IAO_0000234: NCI BBRB

cM1 (lung)
type: NamedIndividual
type: pathologic distant metastases stage for lung according to AJCC 7th edition
IAO_0000111: cM1 (lung)
has curation status: metadata complete
definition: A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there are distant metastases based on clinical assessment.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/
IAO_0000234: NCI BBRB

cM1a (lung)
type: NamedIndividual
type: pathologic distant metastases stage for lung according to AJCC 7th edition
IAO_0000111: cM1a (lung)
has curation status: metadata complete
definition: A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that metastasis is based on clinical assessment and a separate tumor nodule(s) in a contralateral lobe; tumor with pleural nodules OR malignant pleural or pericardial effusion.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/
IAO_0000234: NCI BBRB

cM1b (lung)
type: NamedIndividual
type: pathologic distant metastases stage for lung according to AJCC 7th edition
IAO_0000111: cM1b (lung)
has curation status: metadata complete
definition: A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is a distant metastases based on clinical assessment.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/
IAO_0000234: NCI BBRB

pM1 (lung)
type: NamedIndividual
type: pathologic distant metastases stage for lung according to AJCC 7th edition
IAO_0000111: pM1 (lung)
has curation status: metadata complete
definition: A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is a distant metastases that is histologically confirmed.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/
IAO_0000234: NCI BBRB

pM1a (lung)
type: NamedIndividual
type: pathologic distant metastases stage for lung according to AJCC 7th edition
IAO_0000111: pM1a (lung)
has curation status: metadata complete
definition: A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that metastasis is histologically confirmed and a separate tumor nodule(s) in a contralateral lobe; tumor with pleural nodules OR malignant pleural or pericardial effusion.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/
IAO_0000234: NCI BBRB

pM1b (lung)
type: NamedIndividual
type: pathologic distant metastases stage for lung according to AJCC 7th edition
IAO_0000111: pM1b (lung)
has curation status: metadata complete
definition: A pathologic distant metastases stage for lung according to AJCC 7th edition indicating that there is a distant metastases that is histologically confirmed and associated with distant lymph nodes or carcinomatosis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/lung/path_m/
IAO_0000234: NCI BBRB

cM0 (kidney)
type: NamedIndividual
type: pathologic distant metastases stage for kidney according to AJCC 7th edition
IAO_0000111: cM0 (kidney)
has curation status: metadata complete
definition: A pathologic distant metastases stage for kidney according to AJCC 7th edition indicating that there is no distant metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_m/
IAO_0000234: NCI BBRB

cM1 (kidney)
type: NamedIndividual
type: pathologic distant metastases stage for kidney according to AJCC 7th edition
IAO_0000111: cM1 (kidney)
has curation status: metadata complete
definition: A pathologic distant metastases stage for kidney according to AJCC 7th edition indicating that there are distant metastases based on clinical assessment.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_m/
IAO_0000234: NCI BBRB

pM1 (kidney)
type: NamedIndividual
type: pathologic distant metastases stage for kidney according to AJCC 7th edition
IAO_0000111: pM1 (kidney)
has curation status: metadata complete
definition: A pathologic distant metastases stage for kidney according to AJCC 7th edition indicating that there is a distant metastases that is histologically confirmed.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/kidney_parenchyma/path_m/
IAO_0000234: NCI BBRB

cM0 (ovary)
type: NamedIndividual
type: pathologic distant metastases stage for ovary according to AJCC 7th edition
IAO_0000111: cM0 (ovary)
has curation status: metadata complete
definition: A pathologic distant metastases stage for ovary according to AJCC 7th edition indicating that there is no distant metastasis.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_m/
IAO_0000234: NCI BBRB

cM1 (ovary)
type: NamedIndividual
type: pathologic distant metastases stage for ovary according to AJCC 7th edition
IAO_0000111: cM1 (ovary)
has curation status: metadata complete
definition: A pathologic distant metastases stage for ovary according to AJCC 7th edition indicating that there is distant metastasis except peritoneal metastasis based on clinical assessment.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_m/
IAO_0000234: NCI BBRB

pM1 (ovary)
type: NamedIndividual
type: pathologic distant metastases stage for ovary according to AJCC 7th edition
IAO_0000111: pM1 (ovary)
has curation status: metadata complete
definition: A pathologic distant metastases stage for ovary according to AJCC 7th edition indicating that there is distant metastasis except peritoneal metastasis that is histologically confirmed.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_m/
IAO_0000234: NCI BBRB

Occult Carcinoma (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Occult Carcinoma (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating a small carcinoma, either asymptomatic or giving rise to metastases without symptoms due to the primary carcinoma.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Occult Carcinoma
definition source: http://www.medilexicon.com/dictionary/14371
IAO_0000234: NCI BBRB

Stage 0 (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage 0 (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating a carcinoma in situ (or melanoma in situ for melanoma of the skin or germ cell neoplasia in situ for testicular germ cell tumors) and generally is considered to have no metastatic potential.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 0
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage I (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage I (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers that are smaller or less deeply invasive without regional disease or nodes.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage I
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IIA (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IIA (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent but less than in Stage III and with differing characteristics from IIB and IIC.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIA
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IIB (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IIB (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent but less than in Stage III and with differing characteristics from IIA and IIC.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIB
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IIC (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IIC (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent but less than in Stage III and with differing characteristics from IIA and IIB.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIC
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IIIA (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IIIA (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent greater than in Stage II and with differing characteristics from IIIB and IIIC.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIIA
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IIIB (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IIIB (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent greater than in Stage II and with differing characteristics from IIIA and IIIC.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIIB
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IIIC (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IIIC (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers with increasing tumor or nodal extent greater than in Stage II and with differing characteristics from IIIA and IIIB.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIIC
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IVA (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IVA (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers in patients who present with distant metastases at diagnosis and with differing characteristics from IVB.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IVA
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IVB (AJCC 7th)
type: NamedIndividual
type: clinical tumor stage group according to AJCC 7th edition
IAO_0000111: Stage IVB (AJCC 7th)
has curation status: metadata complete
definition: A clinical tumor stage group according to AJCC 7th edition indicating cancers in patients who present with distant metastases at diagnosis and with differing characteristics from IVA.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IVB
definition source: https://en.wikipedia.org/wiki/Cancer_staging
IAO_0000234: NCI BBRB

Stage IA (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IA (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating invasive carcinoma which can be diagnosed only by microscopy, with deepest invasion <5 mm and the largest extension <7 mm.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IA
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IA1 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IA1 (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating measured stromal invasion of <3.0 mm in depth and extension of <7.0 mm.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IA1
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IA2 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IA2 (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating measured stromal invasion of >3.0 mm and not >5.0 mm with an extension of not >7.0 mm.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IA2
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IB (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IB (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating clinically visible lesions limited to the cervix uteri or pre-clinical cancers greater than stage IA
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IB
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IB1 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IB1 (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating clinically visible lesion limited to the cervix uteri or pre-clinical cancers greater than stage IA <4.0 cm in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IB1
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IB2 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IB2 (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating clinically visible lesion limited to the cervix uteri or pre-clinical cancers greater than stage IA >4.0 cm in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IB2
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IIA (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IIA (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina without parametrial invasion.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIA
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IIA1 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IIA1 (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina without parametrial invasion and clinically visible lesion <4.0 cm in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIA1
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IIA2 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IIA2 (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina without parametrial invasion and clinically visible lesion >4.0 cm in greatest dimension.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIA2
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IIB (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IIB (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating cervical carcinoma invades beyond the uterus, but not to the pelvic wall or to the lower third of the vagina with obvious parametrial invasion.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIB
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IIIA (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IIIA (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating tumour involves lower third of the vagina, with no extension to the pelvic wall.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIIA
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IIIB (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IIIB (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating extension to the pelvic wall and/or hydronephrosis or non-functioning kidney.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IIIB
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IVA (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IVA (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating spread of the growth to adjacent organs.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IVA
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage IVB (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics cervical cancer stage value specification
IAO_0000111: Stage IVB (FIGO)
has curation status: metadata complete
definition: An International Federation of Gynecology and Obstetrics cervical cancer stage value specification indicating spread to distant organs.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage IVB
definition source: https://en.wikipedia.org/wiki/Cervical_cancer_staging
IAO_0000234: NCI BBRB

Stage 1 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 1 (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 1
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 1A (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 1A (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1a, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 1A
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 1B (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 1B (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1b, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 1B
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 1C (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 1C (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T1c, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 1C
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 2 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 2 (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 2
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 2A (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 2A (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2a, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 2A
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 2B (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 2B (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2b, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 2B
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 2C (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 2C (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T2c, N0, and M0.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 2C
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 3 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 3 (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of (T3, N0, and M0) or (T3,3a,3b, NX, and M0).
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 3
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 3A (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 3A (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T3a, N0, and M0 .
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 3A
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 3B (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 3B (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of T3b, N0, and M0 .
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 3B
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 3C (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 3C (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of (T3c, N0,X and M0) or (any T, N1 and M0).
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 3C
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage 4 (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage 4 (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of any T, any N, and M1.
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage 4
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

Stage Unknown (FIGO)
type: NamedIndividual
type: International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
IAO_0000111: Stage Unknown (FIGO)
has curation status: metadata complete
definition: A International Federation of Gynecology and Obstetrics ovarian cancer stage value specification associated with TNM stage values of (T0, N0, and M0) or (T1,1a-1c,2,2a-2c, NX, and M0) or (TX, N0,X, M0).
IAO_0000117: Chris Stoeckert, Helena Ellis
alternative term: Stage Unknown
definition source: https://staging.seer.cancer.gov/tnm/input/1.0/ovary/path_stage_group_direct/
IAO_0000234: NCI BBRB

3: symptomatic in bed more than 50% of the day but not bed ridden
type: NamedIndividual
type: Eastern Cooperative Oncology Group score value specification
IAO_0000111: 3: symptomatic in bed more than 50% of the day but not bed ridden
has curation status: metadata complete
definition: An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic and in bed for more than 50% of the day but is not bed ridden.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

2: symptomatic but in bed less than 50% of the day
type: NamedIndividual
type: Eastern Cooperative Oncology Group score value specification
IAO_0000111: 2: symptomatic but in bed less than 50% of the day
has curation status: metadata complete
definition: An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic but is in bed for less than 50% of the day.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

4: bed ridden
type: NamedIndividual
type: Eastern Cooperative Oncology Group score value specification
IAO_0000111: 4: bed ridden
has curation status: metadata complete
definition: An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic and is bed ridden.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

0: asymptomatic
type: NamedIndividual
type: Eastern Cooperative Oncology Group score value specification
IAO_0000111: 0: asymptomatic
has curation status: metadata complete
definition: An Eastern Cooperative Oncology Group score value specification indicating a patient is asymptomatic.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

1: symptomatic but fully ambulatory
type: NamedIndividual
type: Eastern Cooperative Oncology Group score value specification
IAO_0000111: 1: symptomatic but fully ambulatory
has curation status: metadata complete
definition: An Eastern Cooperative Oncology Group score value specification indicating a patient is symptomatic but is fully ambulatory.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

100: asymptomatic
type: NamedIndividual
type: Karnofsky score vaue specification
IAO_0000111: 100: asymptomatic
has curation status: metadata complete
definition: A Karnofsky score vaue specification indicating that a patient is asymptomatic.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

80-90: symptomatic but fully ambulatory
type: NamedIndividual
type: Karnofsky score vaue specification
IAO_0000111: 80-90: symptomatic but fully ambulatory
has curation status: metadata complete
definition: A Karnofsky score vaue specification indicating that a patient is symptomatic but fully ambulatory.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

60-70: symptomatic but in bed less than 50% of the day
type: NamedIndividual
type: Karnofsky score vaue specification
IAO_0000111: 60-70: symptomatic but in bed less than 50% of the day
has curation status: metadata complete
definition: A Karnofsky score vaue specification indicating that a patient is symptomatic but in bed less than 50% of the day.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

40-50: symptomatic, in bed more than 50% of the day, but not bed ridden
type: NamedIndividual
type: Karnofsky score vaue specification
IAO_0000111: 40-50: symptomatic, in bed more than 50% of the day, but not bed ridden
has curation status: metadata complete
definition: A Karnofsky score vaue specification indicating that a patient is symptomatic, in bed more than 50% of the day, but not bed ridden.
IAO_0000117: Chris Stoeckert, Helena Ellis
definition source: NCI BBRB, OBI
IAO_0000234: NCI BBRB

Oxford Nanopore Technologies
type: NamedIndividual
type: manufacturer
IAO_0000111: Oxford Nanopore Technologies
has curation status: metadata complete
definition: An organization that is developing and selling nanopore sequencing products and is based in the UK.
IAO_0000117: James A. Overton
definition source: https://en.wikipedia.org/wiki/Oxford_Nanopore_Technologies

BioGents
type: NamedIndividual
type: manufacturer
IAO_0000111: BioGents
has curation status: metadata complete
definition: An organization that manufactures mosquito traps and other mosquito control products.
IAO_0000117: John Judkins
definition source: WEB:https://eu.biogents.com/about-biogents/

Abbott
type: NamedIndividual
type: manufacturer
IAO_0000111: Abbott
has curation status: metadata complete
definition: A manufacturer of rapid point-of-care assay devices.
IAO_0000117: John Judkins ORCID:0000-0001-6595-0902
definition source: WEB:https://www.globalpointofcare.abbott/en/about.html
IAO_0000233: https://github.com/obi-ontology/obi/issues/1456

J. Mitra
type: NamedIndividual
type: manufacturer
IAO_0000111: J. Mitra
has curation status: metadata complete
definition: A manufacturer of in vitro diagnostic assay kits in India.
IAO_0000117: John Judkins ORCID:0000-0001-6595-0902
definition source: WEB:https://jmitra.co.in/about-us/
IAO_0000233: https://github.com/obi-ontology/obi/issues/1456

InBios
type: NamedIndividual
type: manufacturer
IAO_0000111: InBios
has curation status: metadata complete
definition: A manufacturer that specializes in in vitro diagnostic devices designed to test for infectious diseases.
IAO_0000117: John Judkins ORCID:0000-0001-6595-0902
definition source: WEB:https://inbios.com/about/
IAO_0000233: https://github.com/obi-ontology/obi/issues/1456

meter
type: NamedIndividual
type: length unit
IAO_0000111: meter
definition: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
alternative term: m
imported from: uo.owl

kilogram
type: NamedIndividual
type: mass unit
IAO_0000111: kilogram
definition: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
alternative term: kg
imported from: uo.owl

second
type: NamedIndividual
type: time unit
IAO_0000111: second
definition: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
alternative term: s
alternative term: sec
imported from: uo.owl

centimeter
type: NamedIndividual
type: length unit
IAO_0000111: centimeter
definition: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
alternative term: cm
imported from: uo.owl

millimeter
type: NamedIndividual
type: length unit
IAO_0000111: millimeter
definition: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
alternative term: mm
imported from: uo.owl

micrometer
type: NamedIndividual
type: length unit
IAO_0000111: micrometer
definition: A length unit which is equal to one millionth of a meter or 10^[-6] m.
alternative term: um
imported from: uo.owl

nanometer
type: NamedIndividual
type: length unit
IAO_0000111: nanometer
definition: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
alternative term: nm
imported from: uo.owl

angstrom
type: NamedIndividual
type: length unit
IAO_0000111: angstrom
definition: A length unit which is equal to 10 [-10] m.
imported from: uo.owl

gram
type: NamedIndividual
type: mass unit
IAO_0000111: gram
definition: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
alternative term: g
imported from: uo.owl

milligram
type: NamedIndividual
type: mass unit
IAO_0000111: milligram
definition: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
alternative term: mg
imported from: uo.owl

microgram
type: NamedIndividual
type: mass unit
IAO_0000111: microgram
definition: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
alternative term: ug
imported from: uo.owl

nanogram
type: NamedIndividual
type: mass unit
IAO_0000111: nanogram
definition: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
alternative term: ng
imported from: uo.owl

picogram
type: NamedIndividual
type: mass unit
IAO_0000111: picogram
definition: A mass unit which is equal to 10^[-12] g.
alternative term: pg
imported from: uo.owl

degree Celsius
type: NamedIndividual
type: temperature unit
IAO_0000111: degree Celsius
definition: A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K.
alternative term: C
alternative term: degree C
imported from: uo.owl

minute
type: NamedIndividual
type: time unit
IAO_0000111: minute
definition: A time unit which is equal to 60 seconds.
alternative term: min
imported from: uo.owl

hour
type: NamedIndividual
type: time unit
IAO_0000111: hour
definition: A time unit which is equal to 3600 seconds or 60 minutes.
alternative term: h
alternative term: hr
imported from: uo.owl

day
type: NamedIndividual
type: time unit
IAO_0000111: day
definition: A time unit which is equal to 24 hours.
imported from: uo.owl

week
type: NamedIndividual
type: time unit
IAO_0000111: week
definition: A time unit which is equal to 7 days.
imported from: uo.owl

month
type: NamedIndividual
type: time unit
IAO_0000111: month
definition: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
imported from: uo.owl

year
type: NamedIndividual
type: time unit
IAO_0000111: year
definition: A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days.
imported from: uo.owl

micromole
type: NamedIndividual
type: substance unit
IAO_0000111: micromole
definition: A substance unit equal to a millionth of a mol or 10^[-6] mol.
alternative term: umol
imported from: uo.owl

nanomole
type: NamedIndividual
type: substance unit
IAO_0000111: nanomole
definition: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
alternative term: nmol
imported from: uo.owl

picomole
type: NamedIndividual
type: substance unit
IAO_0000111: picomole
definition: A substance unit equal to 10^[-12] mol.
alternative term: pmol
imported from: uo.owl

molar
type: NamedIndividual
type: concentration unit
IAO_0000111: molar
definition: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).
alternative term: M
imported from: uo.owl

millimolar
type: NamedIndividual
type: concentration unit
IAO_0000111: millimolar
definition: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
alternative term: mM
imported from: uo.owl

micromolar
type: NamedIndividual
type: concentration unit
IAO_0000111: micromolar
definition: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
alternative term: uM
imported from: uo.owl

nanomolar
type: NamedIndividual
type: concentration unit
IAO_0000111: nanomolar
definition: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.
alternative term: nM
imported from: uo.owl

picomolar
type: NamedIndividual
type: concentration unit
IAO_0000111: picomolar
definition: A unit of molarity which is equal to 10^[-12] M.
alternative term: pM
imported from: uo.owl

cubic centimeter
type: NamedIndividual
type: volume unit
IAO_0000111: cubic centimeter
definition: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.
alternative term: cc
imported from: uo.owl

milliliter
type: NamedIndividual
type: volume unit
IAO_0000111: milliliter
definition: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
alternative term: ml
imported from: uo.owl

liter
type: NamedIndividual
type: volume unit
IAO_0000111: liter
definition: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
alternative term: L
imported from: uo.owl

cubic decimeter
type: NamedIndividual
type: volume unit
IAO_0000111: cubic decimeter
definition: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.
imported from: uo.owl

microliter
type: NamedIndividual
type: volume unit
IAO_0000111: microliter
definition: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
alternative term: ul
imported from: uo.owl

nanoliter
type: NamedIndividual
type: volume unit
IAO_0000111: nanoliter
definition: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
alternative term: nl
imported from: uo.owl

picoliter
type: NamedIndividual
type: volume unit
IAO_0000111: picoliter
definition: A volume unit which is equal to 10^[-12] L.
alternative term: pl
imported from: uo.owl

hertz
type: NamedIndividual
type: frequency unit
IAO_0000111: hertz
definition: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
imported from: uo.owl

mass percentage
type: NamedIndividual
type: concentration unit
IAO_0000111: mass percentage
definition: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
alternative term: % w/w
alternative term: percent weight pr weight
imported from: uo.owl

mass volume percentage
type: NamedIndividual
type: concentration unit
IAO_0000111: mass volume percentage
definition: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.
alternative term: % w/v
alternative term: percent vol per vol
imported from: uo.owl

volume percentage
type: NamedIndividual
type: concentration unit
IAO_0000111: volume percentage
definition: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.
alternative term: % v/v
alternative term: percent vol per vol
imported from: uo.owl

gram per liter
type: NamedIndividual
type: concentration unit
IAO_0000111: gram per liter
definition: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
alternative term: g per L
alternative term: g/L
imported from: uo.owl

milligram per milliliter
type: NamedIndividual
type: concentration unit
IAO_0000111: milligram per milliliter
definition: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.
alternative term: mg per ml
alternative term: mg/ml
imported from: uo.owl

degree Fahrenheit
type: NamedIndividual
type: temperature unit
IAO_0000111: degree Fahrenheit
definition: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
imported from: uo.owl

pH
type: NamedIndividual
type: concentration unit
IAO_0000111: pH
definition: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
imported from: uo.owl

milliliter per liter
type: NamedIndividual
type: concentration unit
IAO_0000111: milliliter per liter
definition: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.
alternative term: ml per L
alternative term: ml/l
imported from: uo.owl

gram per deciliter
type: NamedIndividual
type: concentration unit
IAO_0000111: gram per deciliter
definition: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.
alternative term: g/dl
imported from: uo.owl

colony forming unit per volume
type: NamedIndividual
type: concentration unit
IAO_0000111: colony forming unit per volume
definition: A concentration unit which a measure of viable bacterial numbers in a given volume.
imported from: uo.owl

microliters per minute
type: NamedIndividual
type: volumetric flow rate unit
IAO_0000111: microliters per minute
definition: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
imported from: uo.owl

count per nanomolar second
type: NamedIndividual
type: rate unit
IAO_0000111: count per nanomolar second
definition: A rate unit which is equal to one over one nanomolar second.
imported from: uo.owl

count per molar second
type: NamedIndividual
type: rate unit
IAO_0000111: count per molar second
definition: A rate unit which is equal to one over one molar second.
imported from: uo.owl

count per nanomolar
type: NamedIndividual
type: rate unit
IAO_0000111: count per nanomolar
definition: A rate unit which is equal to one over one nanomolar.
imported from: uo.owl

count per molar
type: NamedIndividual
type: rate unit
IAO_0000111: count per molar
definition: A rate unit which is equal to one over one molar.
imported from: uo.owl

microgram per liter
type: NamedIndividual
type: concentration unit
IAO_0000111: microgram per liter
definition: A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters.
alternative term: ng/ml
alternative term: ug/L
imported from: uo.owl

infer input from direct reg
is rule enabled: true
comment: MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z
type: Imp
body: IndividualPropertyAtom
  property predicate: enables
  argument1: http://purl.obolibrary.org/obo/ro.owl#z
  argument2: http://purl.obolibrary.org/obo/ro.owl#y
body: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#y
body: ClassAtom
  class predicate: molecular_function
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
body: ClassAtom
  class predicate: molecular_function
  argument1: http://purl.obolibrary.org/obo/ro.owl#y
head: IndividualPropertyAtom
  property predicate: has input
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#z

enabling an MF enables its parts
comment: GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'
type: Imp
body: ClassAtom
  class predicate: molecular_function
  argument1: y
body: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: has part
  argument1: y
  argument2: z
head: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: z

involved in BP
is rule enabled: true
comment: GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'
type: Imp
body: ClassAtom
  class predicate: biological_process
  argument1: z
body: IndividualPropertyAtom
  property predicate: part of
  argument1: y
  argument2: z
body: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: y
head: IndividualPropertyAtom
  property predicate: involved in
  argument1: x
  argument2: z

inferring direct reg edge from input to regulatory subfunction
comment: If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: A
  argument2: D

inferring direct neg reg edge from input to regulatory subfunction
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has negative regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: A
  argument2: D

inferring direct positive reg edge from input to regulatory subfunction
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has positive regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: A
  argument2: D

effector input is compound function input
type: Imp
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: has input
  argument1: eff
  argument2: in
head: IndividualPropertyAtom
  property predicate: has input
  argument1: mf
  argument2: in

Input of effector is input of its parent MF
type: Imp
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: has input
  argument1: mf
  argument2: in
head: IndividualPropertyAtom
  property predicate: has input
  argument1: eff
  argument2: in

Imp
comment: if effector directly regulates X, its parent MF directly regulates X
body: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: mf
  argument2: mf2
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
head: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: eff
  argument2: mf2

Imp
comment: if effector directly positively regulates X, its parent MF directly positively regulates X
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: mf
  argument2: mf2
head: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: eff
  argument2: mf2

if effector directly negatively regulates X, its parent MF directly negatively regulates X
type: Imp
body: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: mf
  argument2: mf2
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
head: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: eff
  argument2: mf2

'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
type: Imp
body: IndividualPropertyAtom
  property predicate: overlaps
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: causally downstream of
  argument1: x
  argument2: y
head: ClassAtom
  class predicate: Nothing
  argument1: y
head: ClassAtom
  class predicate: Nothing
  argument1: x

'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
type: Imp
body: IndividualPropertyAtom
  property predicate: overlaps
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: causally upstream of
  argument1: x
  argument2: y
head: ClassAtom
  class predicate: Nothing
  argument1: y
head: ClassAtom
  class predicate: Nothing
  argument1: x