| System | DOI | Title | | ------ | --- | ----- | | 6A_MBL | 10\.1016/j\.chom\.2024\.07\.007 | Bacterial homologs of innate eukaryotic antiviral defenses with anti-phage activity highlight shared evolutionary roots of viral defenses | | Abi2 | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiA | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiAlpha | 10\.3390/v11010048 | Enterococcus faecalis countermeasures defeat a virulent Picovirinae bacteriophage | | AbiB | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiC | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiD | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiE | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiG | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiH | 10\.1111/j\.1574-6968\.1996\.tb08446\.x | Cloning and sequencing of the novel abortive infection gene abiH of Lactococcus lactis ssp\. lactis biovar\. diacetylactis S94 | | AbiI | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiJ | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiK | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiL | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiN | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiO | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiP2 | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiQ | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiR | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiT | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiU | 10\.1016/j\.mib\.2005\.06\.006 | Phage abortive infection in lactococci: variations on a theme | | AbiV | 10\.1128/AEM\.00780-08 | AbiV, a novel antiphage abortive infection mechanism on the chromosome of Lactococcus lactis subsp\. cremoris MG1363 | | AbiZ | 10\.1128/JB\.00904-06 | Abortive phage resistance mechanism AbiZ speeds the lysis clock to cause premature lysis of phage-infected Lactococcus lactis | | Aditi | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | All_UG | 10\.1093/nar/gkac467 | UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions | | Ambrosia | 10\.1101/2025\.09\.30\.679545 | Discovery of phage defense systems through component modularity networks | | ApsAB | 10\.1038/s41467-024-48219-y | An antiplasmid system drives antibiotic resistance gene integration in carbapenemase-producing Escherichia coli lineages | | Aristaios | 10\.1093/nar/gkae671 | Discovery of antiphage systems in the lactococcal plasmidome | | Armada | 10\.1101/2025\.09\.15\.676423 | YprA family helicases provide the missing link between diverse prokaryotic immune systems | | Audmula | 10\.1093/nar/gkae671 | Discovery of antiphage systems in the lactococcal plasmidome | | Avs | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Azaca | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Belenos | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Belisama | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Bil | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Borvo | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | BREX | 10\.15252/embj\.201489455 | BREX is a novel phage resistance system widespread in microbial genomes | | Brig1 | 10\.1038/s41586-024-07329-9 | DNA glycosylases provide antiviral defence in prokaryotes | | Brigantia | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | BstA | 10\.1101/2020\.07\.13\.199331 | Prophage-encoded phage defense proteins with cognate self-immunity | | Bunzi | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Butters_gp30_gp31 | 10\.1128/mSystems\.00534-20 | Mycobacterium phage Butters-encoded proteins contribute to host defense against viral attack | | Butters_gp57r | 10\.1101/2023\.01\.03\.522681 | Identification of a new antiphage system inMycobacteriumphage Butters | | CapRel | 10\.1101/2022\.05\.30\.493996 | Direct activation of an innate immune system in bacteria by a viral capsid protein | | CARD_NLR | 10\.1101/2023\.05\.28\.542683 | CARD-like domains mediate anti-phage defense in bacterial gasdermin systems | | CBASS | 10\.1038/s41564-020-0777-y | Diversity and classification of cyclic-oligonucleotide-based anti-phage signalling systems | | Ceres | 10\.1101/2025\.01\.08\.631966 | Protein and genomic language models chart a vast landscape of antiphage defenses | | Cernunnos | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Charlie_gp32 | 10\.1038/nmicrobiol\.2016\.251 | Prophage-mediated defence against viral attack and viral counter-defence | | Clover | 10\.1038/s41586-026-10135-0 | Nucleotide signals coordinate activation and inhibition of bacterial immunity | | CmdTAC | 10\.1038/s41586-024-08102-8 | Anti-viral defence by an mRNA ADP-ribosyltransferase that blocks translation | | CoCoNut | 10\.7554/eLife\.94800\.3 | CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA | | Crouga | 10\.64898/2026\.02\.27\.708500 | Shuttling, swapping and mixing: the rapid modular evolution of antiviral repertoires in temperate phages and their satellites | | Dag | 10\.1101/2025\.10\.29\.685425 | Antiviral defence is a conserved function of diverse DNA glycosylases | | Damona | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | DARNA | 10\.64898/2026\.02\.22\.705581 | Viral SSB-bound ssDNA activates the bacterial anti-phage defense system DARNA | | DarTG | 10\.1101/2021\.09\.27\.462013 | The DarTG toxin-antitoxin system provides phage defense by ADP-ribosylating viral DNA | | Dazbog | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | dCTPdeaminase | 10\.1101/2021\.04\.26\.441389 | Antiviral defense via nucleotide depletion in bacteria | | DdmDE | 10\.1038/s41586-022-04546-y | Two defence systems eliminate plasmids from seventh pandemic Vibrio cholerae | | Detocs | 10\.1101/2023\.01\.24\.525353 | A conserved family of immune effectors cleaves cellular ATP upon viral infection | | dGTPase | 10\.1101/2021\.04\.26\.441389 | Antiviral defense via nucleotide depletion in bacteria | | Dionysus | 10\.1101/2025\.09\.30\.679545 | Discovery of phage defense systems through component modularity networks | | DISARM | 10\.1038/s41564-017-0051-0 | DISARM is a widespread bacterial defence system with broad anti-phage activities | | Divona | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Dnd | 10\.1038/nchembio\.2007\.39 | Phosphorothioation of DNA in bacteria by dnd genes | | Dodola | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Dpd | 10\.1073/pnas\.1518570113 | Novel genomic island modifies DNA with 7-deazaguanine derivatives | | DpnI | PDMID:2844782 | Proteins encoded by the DpnI restriction gene cassette\. Hyperproduction and characterization of the DpnI endonuclease | | DRT | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Druantia | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | DS-1 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-10 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-11 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-12B | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-13 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-14 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-15 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-16 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-17 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-18 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-19 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-2 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-20 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-21 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-22 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-23 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-24 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-25 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-27 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-28 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-29 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-3 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-31 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-32 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-33 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-34 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-35 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-36 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-37 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-38 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-39 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-4 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-40 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-41 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-42 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-43 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-44 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-45 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-5 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-6 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-7 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-8 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | DS-9 | 10\.1101/2025\.01\.08\.631726 | DefensePredictor: A machine learning model to discover novel prokaryotic immune systems | | Dsr | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | DUF262_Shlafen | 10\.1038/s41564-026-02277-8 | Bacterial Schlafen proteins mediate phage defence | | EcoKMcrA | 10\.1093/nar/gky731 | Activity and structure of EcoKMcrA | | Eleos | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | ENDPaCF1 | 10\.1101/2025\.03\.31\.646159 | END nucleases: Antiphage defense systems targeting multiple hypermodified phage genomes | | Epona | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Erebus | 10\.1016/j\.chom\.2024\.07\.007 | Bacterial homologs of innate eukaryotic antiviral defenses with anti-phage activity highlight shared evolutionary roots of viral defenses | | Esos | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Fliodhais | 10\.1093/nar/gkae671 | Discovery of antiphage systems in the lactococcal plasmidome | | FS_GIY_YIG | 10\.1016/j\.cell\.2022\.07\.014 | Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors | | FS_HEPN_TM | 10\.1016/j\.cell\.2022\.07\.014 | Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors | | FS_HP | 10\.1016/j\.cell\.2022\.07\.014 | Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors | | FS_HP_SDH_sah | 10\.1016/j\.cell\.2022\.07\.014 | Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors | | FS_HsdR_like | 10\.1016/j\.cell\.2022\.07\.014 | Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors | | FS_Sma | 10\.1016/j\.cell\.2022\.07\.014 | Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors | | Gabija | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | Gao_Ape | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Her | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Hhe | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Iet | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Mza | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Ppl | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Qat | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_RL | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_TerY | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Tmn | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | Gao_Upx | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | GAPS1 | 10\.1101/2023\.03\.28\.534373 | Gamma-Mobile-Trio systems define a new class of mobile elements rich in bacterial defensive and offensive tools | | GAPS2 | 10\.1101/2023\.03\.28\.534373 | Gamma-Mobile-Trio systems define a new class of mobile elements rich in bacterial defensive and offensive tools | | GAPS4 | 10\.1101/2023\.03\.28\.534373 | Gamma-Mobile-Trio systems define a new class of mobile elements rich in bacterial defensive and offensive tools | | GAPS6 | 10\.1101/2023\.03\.28\.534373 | Gamma-Mobile-Trio systems define a new class of mobile elements rich in bacterial defensive and offensive tools | | GasderMIN | 10\.1101/2021\.06\.07\.447441 | Bacterial gasdermins reveal an ancient mechanism of cell death | | gcu142 | 10\.1126/science\.ads0915 | Mobile integrons encode phage defense systems | | gcu167 | 10\.1126/science\.ads0915 | Mobile integrons encode phage defense systems | | gcu233 | 10\.1126/science\.ads0915 | Mobile integrons encode phage defense systems | | gcu24 | 10\.1126/science\.ads0915 | Mobile integrons encode phage defense systems | | gcu76 | 10\.1126/science\.ads0915 | Mobile integrons encode phage defense systems | | gcuWGS21 | 10\.1126/science\.ads0915 | Mobile integrons encode phage defense systems | | Geb | 10\.1101/2025\.01\.08\.631966 | Protein and genomic language models chart a vast landscape of antiphage defenses | | GmrSD_RM_Type_IV | 10\.1016/j\.jmb\.2006\.11\.051 | A type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs | | Hachiman | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | Hailong | 10\.1038/s41586-025-09058-z | A DNA-gated molecular guard controls bacterial Hailong anti-phage defence | | HEC-01 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-02 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-03 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-04 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-05 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-06 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-07 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-08 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | HEC-09 | 10\.1101/2024\.01\.29\.577857 | New antiviral defences are genetically embedded within prokaryotic immune systems | | Hesat | 10\.1093/nar/gkae671 | Discovery of antiphage systems in the lactococcal plasmidome | | Hma | 10\.1093/nar/gkac400 | PADLOC: a web server for the identification of antiviral defence systems in microbial genomes | | Hna | 10\.1016/j\.chom\.2023\.01\.010 | A broadly distributed predicted helicase/nuclease confers phage resistance via abortive infection | | Hypnos | 10\.1016/j\.chom\.2024\.07\.007 | Bacterial homologs of innate eukaryotic antiviral defenses with anti-phage activity highlight shared evolutionary roots of viral defenses | | JukAB | 10\.1101/2022\.09\.17\.508391 | A family of novel immune systems targets early infection of nucleus-forming jumbo phages | | Kamadhenu | 10\.1093/nar/gkae671 | Discovery of antiphage systems in the lactococcal plasmidome | | Kiwa | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | Kongming | 10\.1126/science\.ads6055 | Base-modified nucleotides mediate immune signaling in bacteria | | Lamassu-Fam | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Lanthiphage | 10\.1101/2024\.06\.26\.600839 | A family of lanthipeptides with anti-phage function | | Lit | 10\.1186/1743-422X-7-360 | Post-transcriptional control by bacteriophage T4: mRNA decay and inhibition of translation initiation | | Lugos | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | MADS | 10\.1101/2023\.03\.30\.534895 | Bacterial defences interact synergistically by disrupting phage cooperation | | MADS3-4 | 10\.1016/j\.chom\.2024\.07\.005 | The bacterial defense system MADS interacts with CRISPR-Cas to limit phage infection and escape | | MazEF | 10\.1098/rsbl\.2025\.0080 | A bacterial toxin-antitoxin system as a native defence element against RNA phages | | McrBC | 10\.1093/emboj/20\.12\.3210 | The McrBC restriction endonuclease assembles into a ring structure in the presence of G nucleotides | | Menshen | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | mEp332_T2SS_GspM | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | mEp506_HicAB | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | mEp506_HP_DUF2594 | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | mEpX1_KilAN_P63C | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | mEpX1_Nun | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | Metis | 10\.1101/2025\.11\.05\.686725 | Bacteria sense virus-induced genome degradation via methylated mononucleotides | | MMB_gp29_gp30 | 10\.1038/nmicrobiol\.2016\.251 | Prophage-mediated defence against viral attack and viral counter-defence | | Mok_Hok_Sok | 10\.1128/jb\.178\.7\.2044-2050\.1996 | Exclusion of T4 phage by the hok/sok killer locus from plasmid R1 | | Mokosh | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | MqsRAC | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | MspJI | 10\.1073/pnas\.1018448108 | The MspJI family of modification-dependent restriction endonucleases for epigenetic studies | | Nantosuelta | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Nemetona | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Nhi | 10\.1101/776245 | A unique mode of nucleic acid immunity performed by a single multifunctional enzyme | | NixI | 10\.1101/2021\.07\.12\.452122 | A phage parasite deploys a nicking nuclease effector to inhibit replication of its viral host | | NLR | 10\.1101/2022\.07\.19\.500537 | Bacterial NLR-related proteins protect against phage | | Ogmios | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Old_exonuclease | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Olokun | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Ophion | 10\.1101/2025\.09\.30\.679545 | Discovery of phage defense systems through component modularity networks | | Oshun | 10\.1101/2025\.01\.08\.631966 | Protein and genomic language models chart a vast landscape of antiphage defenses | | Other_Type_IV | 10\.1093/nar/gkac975 | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes | | pAgo | 10\.1186/1745-6150-4-29 | Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements | | Panchino_gp28 | 10\.1038/nmicrobiol\.2016\.251 | Prophage-mediated defence against viral attack and viral counter-defence | | Panchino_gp28 | 10\.1038/nmicrobiol\.2016\.251 | Prophage-mediated defence against viral attack and viral counter-defence | | Panoptes | 10\.1038/s41586-025-09557-z | The Panoptes system uses decoy cyclic nucleotides to defend against phage | | Paris | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | PD-Lambda-2 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-Lambda-3 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-Lambda-4 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-Lambda-5 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-Lambda-6 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T2-1 | 10\.1101/2025\.07\.02\.662641 | Identifying phage proteins that activate the bacterial innate immune system | | PD-T4-1 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-10 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-2 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-3 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-4 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-5 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-6 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-7 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T4-8 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T7-1 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T7-2 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PD-T7-5 | 10\.1101/2022\.05\.12\.491691 | Mapping the landscape of anti-phage defense mechanisms in the E\. coli pangenome | | PfiAT | 10\.1111/1751-7915\.13570 | Prophage encoding toxin/antitoxin system PfiT/PfiA inhibits Pf4 production in Pseudomonas aeruginosa | | PhiEpX1_Gp15 | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR12\.1_MorcDcm | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR46\.1_Spackle | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR47\.1_PanTA | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR47_GevAT | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR49\.1_KilAN_ORF11CD3 | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR5\.1_DUF1327_DUF1823 | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR5\.1_HipAD | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | PhiR55\.1_YafOM | 10\.1016/j\.chom\.2025\.04\.021 | E\. coli prophages encode an arsenal of defense systems to protect against temperate phages | | Phrann_gp29_gp30 | 10\.1038/nmicrobiol\.2016\.251 | Prophage-mediated defence against viral attack and viral counter-defence | | Pif | 10\.1007/BF00327934 | Molecular analysis of F plasmid pif region specifying abortive infection of T7 phage | | Prithvi | 10\.1101/2025\.01\.08\.631966 | Protein and genomic language models chart a vast landscape of antiphage defenses | | Prometheus | 10\.1016/j\.chom\.2024\.07\.007 | Bacterial homologs of innate eukaryotic antiviral defenses with anti-phage activity highlight shared evolutionary roots of viral defenses | | PrrC | 10\.1186/1743-422X-7-360 | Post-transcriptional control by bacteriophage T4: mRNA decay and inhibition of translation initiation | | PsyrTA | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | PvuRts1I | 10\.1093/nar/gkr607 | Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine | | Pycsar | 10\.1016/j\.cell\.2021\.09\.031 | Cyclic CMP and cyclic UMP mediate bacterial immunity against phages | | RADAR | 10\.1126/science\.aba0372 | Diverse enzymatic activities mediate antiviral immunity in prokaryotes | | RAZR | 10\.1038/s41586-025-10060-8 | Bacterial immune activation via supramolecular assembly with phage triggers | | Resolvase_DUF5677 | 10\.1038/s41564-026-02277-8 | Bacterial Schlafen proteins mediate phage defence | | Resolvase_KAP_NTPase | 10\.1038/s41564-026-02277-8 | Bacterial Schlafen proteins mediate phage defence | | Resolvase_Schlafen | 10\.1038/s41564-026-02277-8 | Bacterial Schlafen proteins mediate phage defence | | Retron | 10\.1016/j\.cell\.2020\.09\.065 | Bacterial retrons function in anti-phage defense | | Reve | 10\.64898/2026\.02\.27\.708500 | Shuttling, swapping and mixing: the rapid modular evolution of antiviral repertoires in temperate phages and their satellites | | RexAB | 10\.1101/gad\.6\.3\.497 | The Rex system of bacteriophage lambda: tolerance and altruistic cell death | | Rhea | 10\.1093/nar/gkae671 | Discovery of antiphage systems in the lactococcal plasmidome | | RloC | 10\.1111/j\.1365-2958\.2008\.06387\.x | RloC: a wobble nucleotide-excising and zinc-responsive bacterial tRNase | | RM | 10\.1093/nar/gkac975 | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes | | RM_Type_I | 10\.1093/nar/gkac975 | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes | | RM_Type_II | 10\.1093/nar/gkac975 | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes | | RM_Type_IIG | 10\.1093/nar/gkac975 | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes | | RM_Type_III | 10\.1093/nar/gkac975 | REBASE: a database for DNA restriction and modification: enzymes, genes and genomes | | RnlAB | 10\.1534/genetics\.110\.121798 | Escherichia coli rnlA and rnlB compose a novel toxin-antitoxin system | | RosmerTA | 10\.1016/j\.chom\.2022\.09\.017 | An expanded arsenal of immune systems that protect bacteria from phages | | Rst_2TM_1TM_TIR | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rst_3HP | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rst_DUF4238 | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rst_gop_beta_cll | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rst_HelicaseDUF2290 | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rst_Hydrolase-3Tm | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rst_RT-nitrilase-Tm | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rst_TIR-NLR | 10\.1101/2021\.01\.21\.427644 | Prophage-encoded hotspots of bacterial immune systems | | Rugutis | 10\.1093/nar/gkae671 | Discovery of antiphage systems in the lactococcal plasmidome | | SanaTA | 10\.1016/j\.molcel\.2013\.02\.002 | Discovery of functional toxin/antitoxin systems in bacteria by shotgun cloning | | ScoMcrA | 10\.1038/s41467-018-07093-1 | Structural basis for the recognition of sulfur in phosphorothioated DNA | | SDIC1 | 10\.1016/j\.celrep\.2024\.115055 | Multi-conflict islands are a widespread trend within Serratia spp | | SDIC3 | 10\.1016/j\.celrep\.2024\.115055 | Multi-conflict islands are a widespread trend within Serratia spp | | SDIC4 | 10\.1016/j\.celrep\.2024\.115055 | Multi-conflict islands are a widespread trend within Serratia spp | | SEFIR | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Septu | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | Shango | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Shedu | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | Shlafen_Ig-like | 10\.1038/s41564-026-02277-8 | Bacterial Schlafen proteins mediate phage defence | | ShosTA | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | Sirona | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | SNIPE | 10\.1038/s41586-026-10207-1 | A membrane-bound nuclease directly cleaves phage DNA during genome injection | | SoFIC | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | SpbK | 10\.1371/journal\.pgen\.1010065 | Interactions between mobile genetic elements: An anti-phage gene in an integrative and conjugative element protects host cells from predation by a temperate bacteriophage | | SspBCDE | 10\.1128/mBio\.00613-21 | SspABCD-SspFGH constitutes a new type of DNA phosphorothioate-based bacterial defense system | | Stk2 | 10\.1016/j\.chom\.2016\.08\.010 | A eukaryotic-like Serine/threonine kinase protects staphylococci against phages | | Sucellos | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Tab | 10\.1038/s41467-024-45892-x | Anti-phage defence through inhibition of virion assembly | | TagI | 10\.1093/nar/gky781 | Crystal structure of the modification-dependent SRA-HNH endonuclease TagI | | Taranis | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | TgvAB | 10\.1128/jb\.00145-24 | Vibrio cholerae pathogenicity island 2 encodes two distinct types of restriction systems | | Tha | 10\.1038/s41564-024-01661-6 | Bacteriophages avoid autoimmunity from cognate immune systems as an intrinsic part of their life cycles | | Thoeris | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | Tiamat | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | TIR-I | 10\.1038/s41467-024-51738-3 | The role of TIR domain-containing proteins in bacterial defense against phages | | TIR-III | 10\.1038/s41467-024-51738-3 | The role of TIR domain-containing proteins in bacterial defense against phages | | TIR-IV | 10\.1038/s41467-024-51738-3 | The role of TIR domain-containing proteins in bacterial defense against phages | | TIR-VII | 10\.1038/s41467-024-51738-3 | The role of TIR domain-containing proteins in bacterial defense against phages | | TIR-VIII | 10\.1038/s41467-024-51738-3 | The role of TIR domain-containing proteins in bacterial defense against phages | | Toga | 10\.64898/2026\.02\.27\.708500 | Shuttling, swapping and mixing: the rapid modular evolution of antiviral repertoires in temperate phages and their satellites | | Toutatis | 10\.1126/science\.ads0768 | Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems | | Ukko | 10\.1101/2025\.01\.08\.631966 | Protein and genomic language models chart a vast landscape of antiphage defenses | | Uzume | 10\.1101/2022\.05\.11\.491447 | An expanding arsenal of immune systems that protect bacteria from phages | | VcaM4I | 10\.1093/nar/gkaa1218 | Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA | | Veles | 10\.1101/2025\.01\.08\.631966 | Protein and genomic language models chart a vast landscape of antiphage defenses | | Viperin | 10\.1038/s41586-020-2762-2 | Prokaryotic viperins produce diverse antiviral molecules | | VP1796 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1817 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1823 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1826 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1839 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1840 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1848 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1851 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | VP1853 | 10\.1038/s41564-025-01927-7 | Integrons are anti-phage defence libraries in Vibrio parahaemolyticus | | Wadjet | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome | | Zorya | 10\.1126/science\.aar4120 | Systematic discovery of antiphage defense systems in the microbial pangenome |