omp.owl
type: Ontology
has_obo_format_version: 1.2
date: 13:04:2021 14:52
auto-generated-by: OBO-Edit 2.3.1
default-namespace: microbial_phenotype
comment: select is_a closure
saved-by: siegele
version IRI: omp.owl

definition
type: AnnotationProperty

expand assertion to
type: AnnotationProperty

term replaced by
type: AnnotationProperty

never_in_taxon
type: AnnotationProperty
expand assertion to: Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: ?X and (RO_0002162 some ?Y)
expand assertion to: Class: ?X DisjointWith: RO_0002162 some ?Y
database_cross_reference: RO:0002161
has_obo_namespace: external
shorthand: never_in_taxon
id: never_in_taxon
is class level: true
is metadata tag: true

is opposite_of
type: AnnotationProperty
database_cross_reference: RO:0002604
shorthand: is_opposite_of
id: is_opposite_of
has_obo_namespace: quality
is class level: true
is metadata tag: true

BRAND NAME
type: AnnotationProperty
sub property of: synonym_type_property

Cross product review
type: AnnotationProperty
comment: Involved_in
sub property of: subset_property

FORMULA
type: AnnotationProperty
sub property of: synonym_type_property

INN
type: AnnotationProperty
sub property of: synonym_type_property

IUPAC NAME
type: AnnotationProperty
sub property of: synonym_type_property

InChI
type: AnnotationProperty
sub property of: synonym_type_property

InChIKey
type: AnnotationProperty
sub property of: synonym_type_property

SMILES
type: AnnotationProperty
sub property of: synonym_type_property

SOFA
type: AnnotationProperty
comment: SO feature annotation
sub property of: subset_property

abnormal slim
type: AnnotationProperty
comment: Abnormal/normal slim
sub property of: subset_property

absent slim
type: AnnotationProperty
comment: Absent/present slim
sub property of: subset_property

attribute slim
type: AnnotationProperty
comment: Attribute slim
sub property of: subset_property

cell quality
type: AnnotationProperty
comment: cell_quality
sub property of: subset_property

disposition slim
type: AnnotationProperty
comment: Disposition slim
sub property of: subset_property

goantislim grouping
type: AnnotationProperty
comment: Grouping classes that can be excluded
sub property of: subset_property

goslim aspergillus
type: AnnotationProperty
comment: Aspergillus GO slim
sub property of: subset_property

goslim candida
type: AnnotationProperty
comment: Candida GO slim
sub property of: subset_property

goslim generic
type: AnnotationProperty
comment: Generic GO slim
sub property of: subset_property

goslim goa
type: AnnotationProperty
comment: GOA and proteome slim
sub property of: subset_property

goslim metagenomics
type: AnnotationProperty
comment: Metagenomics GO slim
sub property of: subset_property

goslim pir
type: AnnotationProperty
comment: PIR GO slim
sub property of: subset_property

goslim plant
type: AnnotationProperty
comment: Plant GO slim
sub property of: subset_property

goslim pombe
type: AnnotationProperty
comment: Fission yeast GO slim
sub property of: subset_property

goslim virus
type: AnnotationProperty
comment: Viral GO slim
sub property of: subset_property

goslim yeast
type: AnnotationProperty
comment: Yeast GO slim
sub property of: subset_property

gosubset prok
type: AnnotationProperty
comment: Prokaryotic GO subset
sub property of: subset_property

hpo slim
type: AnnotationProperty
comment: Human phenotype slim
sub property of: subset_property

mf needs review
type: AnnotationProperty
comment: Catalytic activity terms in need of attention
sub property of: subset_property

mpath slim
type: AnnotationProperty
comment: Pathology slim
sub property of: subset_property

qc do not annotate
type: AnnotationProperty
comment: Term not to be used for direct annotation
sub property of: subset_property

qc do not manually annotate
type: AnnotationProperty
comment: Term not to be used for direct manual annotation
sub property of: subset_property

relational slim
type: AnnotationProperty
comment: Relational slim: types of quality that require an additional entity in order to exist
sub property of: subset_property

scalar slim
type: AnnotationProperty
comment: Scalar slim
sub property of: subset_property

Systematic synonym
type: AnnotationProperty
sub property of: synonym_type_property
has_scope: has_exact_synonym

value slim
type: AnnotationProperty
comment: Value slim
sub property of: subset_property

virus checked
type: AnnotationProperty
comment: Viral overhaul terms
sub property of: subset_property

subset_property
type: AnnotationProperty

synonym_type_property
type: AnnotationProperty

consider
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

has_scope
type: AnnotationProperty

in_subset
type: AnnotationProperty

shorthand
type: AnnotationProperty

part_of
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: BFO:0000050
comment: Example: amino_acid part_of polypeptide.
usage: Used in FYPO to identify phenotypes that are always observed in the context of another, usually larger-scale, phenotype.
definition: X part_of Y if X is a subregion of Y.
shorthand: part_of
id: part_of
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl
in_subset: SOFA

Axiom
annotated target: X part_of Y if X is a subregion of Y.
database_cross_reference: http://precedings.nature.com/documents/3495/version/1
annotated source: part_of
annotated property: definition

has_part
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: BFO:0000051
comment: Example: operon has_part gene.
definition: Inverse of part_of.
usage: Used in FYPO to link phenotypes that are collections of features to phenotypes representing the features.
shorthand: has_part
id: has_part
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl

Axiom
annotated target: Inverse of part_of.
database_cross_reference: http://precedings.nature.com/documents/3495/version/1
annotated source: has_part
annotated property: definition

preceded_by
type: ObjectProperty
database_cross_reference: BFO:0000062
usage: Used in FYPO when a phenotype is observed after another event, usually a GO biological process, has ended, and where there isn't a suitable process to use with a during relation.
has_obo_namespace: microbial_phenotype
shorthand: preceded_by
id: preceded_by

precedes
type: ObjectProperty
database_cross_reference: BFO:0000063
usage: Used in FYPO when a phenotype is observed before another event, usually a GO biological process, begins, and where there isn't a suitable process to use with a during relation.
has_obo_namespace: microbial_phenotype
id: precedes
shorthand: precedes

occurs in
type: ObjectProperty
database_cross_reference: BFO:0000066
usage: Used in FYPO to identify a location, usually a cellular component or cell type, within which a phenotype is observed or relevant.
has_obo_namespace: microbial_phenotype
shorthand: occurs_in
id: occurs_in

during
type: ObjectProperty
database_cross_reference: GOREL:0000002
usage: Identifies a process, cell cycle stage or life stage during which a phenotype is observed or relevant.
shorthand: during
id: during
has_obo_namespace: microbial_phenotype

exists_during
type: ObjectProperty
database_cross_reference: GOREL:0000032
usage: Identifies a process, cell cycle stage or life stage during which a phenotype that affects a continuant, such as a cellular component or the level of a substance, is observed or relevant.
id: exists_during
shorthand: exists_during
has_obo_namespace: microbial_phenotype

occurs_at
type: ObjectProperty
database_cross_reference: GOREL:0000501
usage: This relation is not constrained with respect to whether the place where an event occurs completely surrounds, or is adjacent to, the location indicated. Example: chromatin silencing at centromere unfolds_around centromere : Repression of transcription of centromeric DNA by the formation of heterochromatin. Used in FYPO to identify a position where a phenotype is observed or relevant, usually a DNA or RNA sequence feature specified by a SO ID.
has_obo_namespace: microbial_phenotype
shorthand: occurs_at
id: occurs_at

inheres_in
type: ObjectProperty
database_cross_reference: RO:0000052
usage: Used in FYPO as described in PATO best practices; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps).
shorthand: inheres_in
id: inheres_in
has_obo_namespace: microbial_phenotype

participates_in
type: ObjectProperty
database_cross_reference: RO:0000056
has_obo_namespace: external
id: participates_in
shorthand: participates_in

has role
type: ObjectProperty
database_cross_reference: RO:0000087
has_obo_namespace: chebi_ontology
id: has_role
shorthand: has_role

located in
type: ObjectProperty
database_cross_reference: RO:0001025
usage: Used in FYPO to indicate where a physical quality phenotype is observed.
id: located_in
shorthand: located_in
has_obo_namespace: microbial_phenotype

happens_during
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: GOREL:0000001
usage: Identifies a process, cell cycle stage or life stage during which a phenotype that affects an occurrent, i.e. a biological process or molecular function, is observed or relevant.
database_cross_reference: RO:0002092
has_obo_namespace: external
shorthand: happens_during
id: happens_during
sub property of: ends_during
IAO_0000412: go.owl

ends_during
type: ObjectProperty
database_cross_reference: RO:0002093
shorthand: ends_during
id: ends_during
has_obo_namespace: external
IAO_0000412: go.owl

regulates
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: RO:0002211
has_obo_namespace: external
id: regulates
shorthand: regulates
IAO_0000412: go.owl

negatively regulates
type: ObjectProperty
database_cross_reference: RO:0002212
has_obo_namespace: external
id: negatively_regulates
shorthand: negatively_regulates
sub property of: regulates
IAO_0000412: go.owl

positively regulates
type: ObjectProperty
database_cross_reference: RO:0002213
has_obo_namespace: external
id: positively_regulates
shorthand: positively_regulates
sub property of: regulates
IAO_0000412: go.owl

has_output
type: ObjectProperty
usage: Def comes from gorel file. Used in FYPO where one phenotype (p) always results in an additional phenotype (c) as a consequence. There may be other ways to get phenotype (c).
database_cross_reference: RO:0002234
id: has_output
shorthand: has_output
has_obo_namespace: microbial_phenotype
definition: p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.

Axiom
database_cross_reference: GOC:curators
annotated target: p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
annotated property: definition
annotated source: has_output

inheres in part of
type: ObjectProperty
database_cross_reference: RO:0002314
usage: Used in FYPO as described in MP/HP logical definition best practices for processes, and in an analogous manner for cell/cell part structure; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps).
shorthand: inheres_in_part_of
id: inheres_in_part_of
has_obo_namespace: microbial_phenotype

output_of
type: ObjectProperty
usage: Inverse of has_output. Relation between a structure and a process that forms it, or between one process and a preceding process; A output_of B used where B has_output A isn't always true. Implies that process B is the only way to get output. Used in FYPO where one phenotype (c) always results when another phenotype (p) is present. Phenotype (p) may have other consequences in addition to phenotype (c).
database_cross_reference: RO:0002353
has_exact_synonym: formation results from
has_obo_namespace: microbial_phenotype
shorthand: output_of
id: output_of

Axiom
database_cross_reference: PomBase:mah
annotated target: formation results from
annotated source: output_of
annotated property: has_exact_synonym

towards
type: ObjectProperty
database_cross_reference: RO:0002503
comment: Relation binding a relational quality or disposition to the relevant type of entity.
usage: Relation binding a relational quality or disposition to the relevant type of entity. Used in FYPO as described in PATO best practices; identifies abolished GO processes; identifies substances affected by phenotypes.
has_obo_namespace: quality
id: towards
shorthand: towards
IAO_0000412: pato.owl

adjacent_to
type: ObjectProperty
definition: A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap.
id: adjacent_to
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl
in_subset: SOFA

Axiom
annotated target: A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap.
database_cross_reference: PMID:20226267
database_cross_reference: SO:ke
annotated property: definition
annotated source: adjacent_to

contains
type: ObjectProperty
type: TransitiveProperty
creation date: 2010-10-14T01:32:15Z
comment: Example: pre_miRNA contains miRNA_loop.
definition: The inverse of contained_by.
id: contains
created by: kareneilbeck
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl

Axiom
database_cross_reference: PMID:20226267
annotated target: The inverse of contained_by.
annotated property: definition
annotated source: contains

correlates_with
type: ObjectProperty
id: correlates_with
has_obo_namespace: quality

decreased_in_magnitude_relative_to
type: ObjectProperty
type: TransitiveProperty
comment: This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'.
id: decreased_in_magnitude_relative_to
definition: q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
has_obo_namespace: quality
domain: PATO_0000001
range: PATO_0000001
IAO_0000412: pato.owl
sub property of: different_in_magnitude_relative_to

Axiom
database_cross_reference: PATOC:CJM
annotated target: q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
annotated property: definition
annotated source: decreased_in_magnitude_relative_to

decreased_relative_to
type: ObjectProperty
type: TransitiveProperty
creation date: 2014-02-13T01:39:46Z
created by: Marcus
definition: P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P.
id: decreased_relative_to
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
database_cross_reference: ECO:MCC
annotated target: P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P.
annotated property: definition
annotated source: decreased_relative_to

derives_from
type: ObjectProperty
type: TransitiveProperty
id: derives_from
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl
in_subset: SOFA

different_in_magnitude_relative_to
type: ObjectProperty
id: different_in_magnitude_relative_to
definition: q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
has_obo_namespace: quality
domain: PATO_0000001
range: PATO_0000001
IAO_0000412: pato.owl

Axiom
database_cross_reference: PATOC:CJM
annotated target: q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
annotated property: definition
annotated source: different_in_magnitude_relative_to

directly_associated_with
type: ObjectProperty
creation date: 2009-08-26T02:50:08Z
comment: Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. Association is weaker than correlation or proportionality. These relations may be later added to PATO.
created by: cjm
id: directly_associated_with
definition: q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
has_obo_namespace: quality
range: PATO_0000001
domain: PATO_0000001
IAO_0000412: pato.owl

Axiom
database_cross_reference: PATOC:cjm
database_cross_reference: Wikipedia:Association_(statistics)
annotated target: q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
annotated property: definition
annotated source: directly_associated_with

has_cross_section
type: ObjectProperty
comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.
id: has_cross_section
has_obo_namespace: quality
definition: s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
IAO_0000412: pato.owl

Axiom
database_cross_reference: PATOC:CJM
annotated target: s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
annotated property: definition
annotated source: has_cross_section

has_dividend_entity
type: ObjectProperty
id: has_dividend_entity
has_obo_namespace: quality

has_dividend_quality
type: ObjectProperty
id: has_dividend_quality
has_obo_namespace: quality
range: PATO_0000001
IAO_0000412: pato.owl
sub property of: has_ratio_quality

has_divisor_entity
type: ObjectProperty
id: has_divisor_entity
has_obo_namespace: quality

has_divisor_quality
type: ObjectProperty
id: has_divisor_quality
has_obo_namespace: quality
range: PATO_0000001
IAO_0000412: pato.owl
sub property of: has_ratio_quality

has functional parent
type: ObjectProperty
has_obo_namespace: chebi_ontology
id: has_functional_parent

has_origin
type: ObjectProperty
id: has_origin
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl

has parent hydride
type: ObjectProperty
has_obo_namespace: chebi_ontology
id: has_parent_hydride

has_quality
type: ObjectProperty
comment: The relationship between a feature and an attribute.
id: has_quality
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl

has_ratio_quality
type: ObjectProperty
id: has_ratio_quality
has_obo_namespace: quality
range: PATO_0000001
IAO_0000412: pato.owl

increased_in_magnitude_relative_to
type: ObjectProperty
type: TransitiveProperty
comment: This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.
id: increased_in_magnitude_relative_to
definition: q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
has_obo_namespace: quality
domain: PATO_0000001
range: PATO_0000001
IAO_0000412: pato.owl
sub property of: different_in_magnitude_relative_to

Axiom
database_cross_reference: PATOC:CJM
annotated target: q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
annotated property: definition
annotated source: increased_in_magnitude_relative_to

increased_relative_to
type: ObjectProperty
type: TransitiveProperty
creation date: 2014-02-13T01:41:08Z
created by: Marcus
definition: P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P.
id: increased_relative_to
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
database_cross_reference: ECO:MCC
annotated target: P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P.
annotated property: definition
annotated source: increased_relative_to

inversely_associated_with
type: ObjectProperty
creation date: 2009-08-26T02:50:24Z
comment: Association is weaker than correlation or proportionality. These relations may be later added to PATO.
created by: cjm
id: inversely_associated_with
definition: q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
has_obo_namespace: quality
domain: PATO_0000001
range: PATO_0000001
IAO_0000412: pato.owl

Axiom
database_cross_reference: PATOC:cjm
database_cross_reference: Wikipedia:Association_(statistics)
annotated target: q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.
annotated property: definition
annotated source: inversely_associated_with

is conjugate acid of
type: ObjectProperty
has_obo_namespace: chebi_ontology
id: is_conjugate_acid_of
is cyclic: true

is conjugate base of
type: ObjectProperty
has_obo_namespace: chebi_ontology
id: is_conjugate_base_of
is cyclic: true

is enantiomer of
type: ObjectProperty
has_obo_namespace: chebi_ontology
id: is_enantiomer_of
is cyclic: true

is_magnitude_of
type: ObjectProperty
id: is_magnitude_of
has_obo_namespace: pato.ontology

is_measurement_of
type: ObjectProperty
id: is_measurement_of
has_obo_namespace: pato.ontology

is substituent group from
type: ObjectProperty
has_obo_namespace: chebi_ontology
id: is_substituent_group_from

is tautomer of
type: ObjectProperty
type: TransitiveProperty
has_obo_namespace: chebi_ontology
id: is_tautomer_of
is cyclic: true

is_unit_of
type: ObjectProperty
id: is_unit_of
has_obo_namespace: pato.ontology

member_of
type: ObjectProperty
type: TransitiveProperty
comment: A subtype of part_of. Inverse is collection_of. Winston, M, Chaffin, R, Herrmann: A taxonomy of part-whole relations. Cognitive Science 1987, 11:417-444.
id: member_of
has_obo_namespace: sequence
sub property of: part_of
IAO_0000412: so-xp.obo.owl
in_subset: SOFA

non_functional_homolog_of
type: ObjectProperty
definition: A relationship between a pseudogenic feature and its functional ancestor.
id: non_functional_homolog_of
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl
in_subset: SOFA

Axiom
annotated target: A relationship between a pseudogenic feature and its functional ancestor.
database_cross_reference: SO:ke
annotated property: definition
annotated source: non_functional_homolog_of

overlaps
type: ObjectProperty
creation date: 2010-10-14T01:33:15Z
comment: Example: coding_exon overlaps CDS.
definition: X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y.
created by: kareneilbeck
id: overlaps
has_obo_namespace: sequence
IAO_0000412: so-xp.obo.owl

Axiom
database_cross_reference: PMID:20226267
annotated target: X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y.
annotated property: definition
annotated source: overlaps

qualifier
type: ObjectProperty
usage: Used in FYPO as described in PATO best practices; placeholder relation to indicate normality/abnormality.
has_obo_namespace: microbial_phenotype
id: qualifier

realized_by
type: ObjectProperty
has_obo_namespace: quality
id: realized_by

reciprocal_of
type: ObjectProperty
comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.
definition: q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.
has_obo_namespace: quality
id: reciprocal_of
IAO_0000412: pato.owl

Axiom
database_cross_reference: PATOC:CJM
annotated target: q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.
annotated property: definition
annotated source: reciprocal_of

similar_in_magnitude_relative_to
type: ObjectProperty
definition: q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
has_obo_namespace: quality
id: similar_in_magnitude_relative_to
domain: PATO_0000001
range: PATO_0000001
IAO_0000412: pato.owl

Axiom
database_cross_reference: PATOC:CJM
annotated target: q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.
annotated property: definition
annotated source: similar_in_magnitude_relative_to

singly_occurring_form_of
type: ObjectProperty
comment: PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them.
has_exact_synonym: monadic_form_of
has_obo_namespace: quality
id: singly_occurring_form_of

transcribed_from
type: ObjectProperty
creation date: 2009-08-19T12:05:39Z
comment: Example: primary_transcript transcribed_from gene.
definition: X is transcribed_from Y if X is synthesized from template Y.
created by: kareneilbeck
has_obo_namespace: sequence
id: transcribed_from
IAO_0000412: so-xp.obo.owl

Axiom
annotated target: X is transcribed_from Y if X is synthesized from template Y.
database_cross_reference: http://precedings.nature.com/documents/3495/version/1
annotated property: definition
annotated source: transcribed_from

transcribed_to
type: ObjectProperty
creation date: 2009-08-19T12:08:24Z
comment: Example: gene transcribed_to primary_transcript.
definition: Inverse of transcribed_from.
created by: kareneilbeck
has_obo_namespace: sequence
id: transcribed_to
IAO_0000412: so-xp.obo.owl

Axiom
annotated target: Inverse of transcribed_from.
database_cross_reference: http://precedings.nature.com/documents/3495/version/1
annotated property: definition
annotated source: transcribed_to

variant_of
type: ObjectProperty
definition: A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A.
comment: Added to SO during the immunology workshop, June 2007. This relationship was approved by Barry Smith.
has_obo_namespace: sequence
id: variant_of
IAO_0000412: so-xp.obo.owl

Axiom
annotated target: A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A.
database_cross_reference: SO:immuno_workshop
annotated property: definition
annotated source: variant_of

chemical entity
type: Class
definition: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
id: CHEBI:24431
has_obo_namespace: chebi_ontology

Axiom
annotated target: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
database_cross_reference: CHEBI:Team
annotated source: chemical entity
annotated property: definition

biological role
type: Class
subclass of: role
definition: A role played by the molecular entity or part thereof within a biological context.
id: CHEBI:24432
has_obo_namespace: chebi_ontology

Axiom
annotated target: A role played by the molecular entity or part thereof within a biological context.
database_cross_reference: CHEBI:Team
annotated source: biological role
annotated property: definition

pesticide
type: Class
subclass of: application
id: CHEBI:25944
definition: Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests.
database_cross_reference: Wikipedia:Pesticide
has_obo_namespace: chebi_ontology

Axiom
database_cross_reference: CHEBI:Team
annotated target: Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests.
annotated source: pesticide
annotated property: definition

application
type: Class
subclass of: role
id: CHEBI:33232
definition: Intended use of the molecular entity or part thereof by humans.
has_obo_namespace: chebi_ontology

Axiom
database_cross_reference: CHEBI:Team
annotated target: Intended use of the molecular entity or part thereof by humans.
annotated source: application
annotated property: definition

antimicrobial agent
type: Class
subclass of: biological role
subclass of: pesticide
definition: A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
id: CHEBI:33281
has_related_synonym: antimicrobial
has_obo_namespace: chebi_ontology
has_related_synonym: microbiocides

Axiom
annotated target: A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
database_cross_reference: CHEBI:Team
annotated source: antimicrobial agent
annotated property: definition

role
type: Class
definition: A role is a particular behaviour which a material entity may exhibit.
id: CHEBI:50906
has_obo_namespace: chebi_ontology

Axiom
annotated target: A role is a particular behaviour which a material entity may exhibit.
database_cross_reference: CHEBI:Team
annotated source: role
annotated property: definition

reproduction
type: Class
subclass of: biological_process
id: GO:0000003
has_alternative_id: GO:0019952
has_alternative_id: GO:0050876
definition: The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
database_cross_reference: Wikipedia:Reproduction
has_obo_namespace: biological_process
has_exact_synonym: reproductive physiological process
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:isa_complete
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0198506732
annotated target: The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
annotated source: reproduction
annotated property: definition

cilium or flagellum-dependent cell motility
type: Class
subclass of: cell motility
definition: Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella.
id: GO:0001539
comment: Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC.
has_obo_namespace: biological_process
has_related_synonym: ciliary or bacterial-type flagellar motility
has_exact_synonym: ciliary/flagellar motility
in_subset: gosubset prok
in_subset: qc do not manually annotate

Axiom
annotated target: Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella.
database_cross_reference: GOC:cilia
database_cross_reference: GOC:hjd
database_cross_reference: GOC:krc
annotated source: cilium or flagellum-dependent cell motility
annotated property: definition

cellular_component
type: Class
id: GO:0005575
has_alternative_id: GO:0008372
database_cross_reference: NIF_Subcellular:sao1337158144
comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
definition: The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
has_exact_synonym: cellular component
has_obo_namespace: cellular_component
has_related_synonym: subcellular entity
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
database_cross_reference: NIF_Subcellular:nlx_subcell_100315
annotated target: subcellular entity
annotated source: cellular_component
annotated property: has_related_synonym

Axiom
database_cross_reference: GOC:go_curators
database_cross_reference: NIF_Subcellular:sao-1337158144
annotated target: The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
annotated source: cellular_component
annotated property: definition

cell
type: Class
subclass of: cellular_component
id: GO:0005623
database_cross_reference: NIF_Subcellular:sao1813327414
definition: The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
database_cross_reference: Wikipedia:Cell_(biology)
has_obo_namespace: cellular_component
in_subset: goslim generic
in_subset: goslim plant
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:go_curators
annotated target: The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
annotated source: cell
annotated property: definition

nucleobase-containing compound metabolic process
type: Class
subclass of: cellular aromatic compound metabolic process
subclass of: cellular nitrogen compound metabolic process
subclass of: primary metabolic process
subclass of: heterocycle metabolic process
subclass of: organic cyclic compound metabolic process
definition: Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
id: GO:0006139
has_alternative_id: GO:0055134
has_obo_namespace: biological_process
has_exact_synonym: cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
has_exact_synonym: cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism
has_related_synonym: nucleobase, nucleoside and nucleotide metabolic process
has_related_synonym: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
has_exact_synonym: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Axiom
annotated target: Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
database_cross_reference: GOC:ai
annotated source: nucleobase-containing compound metabolic process
annotated property: definition

Axiom
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated target: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
annotated source: nucleobase-containing compound metabolic process
annotated property: has_related_synonym

DNA metabolic process
type: Class
subclass of: cellular macromolecule metabolic process
subclass of: nucleic acid metabolic process
definition: Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
has_exact_synonym: DNA metabolism
id: GO:0006259
has_alternative_id: GO:0055132
has_obo_namespace: biological_process
has_exact_synonym: cellular DNA metabolism
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Axiom
annotated target: Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
database_cross_reference: ISBN:0198506732
annotated source: DNA metabolic process
annotated property: definition

DNA replication
type: Class
subclass of: DNA metabolic process
subclass of: cellular macromolecule biosynthetic process
id: GO:0006260
has_alternative_id: GO:0055133
database_cross_reference: Reactome:REACT_100559
database_cross_reference: Reactome:REACT_101280
database_cross_reference: Reactome:REACT_101497
database_cross_reference: Reactome:REACT_102679
database_cross_reference: Reactome:REACT_103614
database_cross_reference: Reactome:REACT_104547
database_cross_reference: Reactome:REACT_105292
database_cross_reference: Reactome:REACT_105467
database_cross_reference: Reactome:REACT_105835
database_cross_reference: Reactome:REACT_106018
database_cross_reference: Reactome:REACT_106104
database_cross_reference: Reactome:REACT_106382
database_cross_reference: Reactome:REACT_106434
database_cross_reference: Reactome:REACT_106732
database_cross_reference: Reactome:REACT_107075
database_cross_reference: Reactome:REACT_107423
database_cross_reference: Reactome:REACT_108461
database_cross_reference: Reactome:REACT_108634
database_cross_reference: Reactome:REACT_108739
database_cross_reference: Reactome:REACT_108768
database_cross_reference: Reactome:REACT_108929
database_cross_reference: Reactome:REACT_109137
database_cross_reference: Reactome:REACT_112472
database_cross_reference: Reactome:REACT_113703
database_cross_reference: Reactome:REACT_29423
database_cross_reference: Reactome:REACT_29444
database_cross_reference: Reactome:REACT_29691
database_cross_reference: Reactome:REACT_29764
database_cross_reference: Reactome:REACT_30149
database_cross_reference: Reactome:REACT_31024
database_cross_reference: Reactome:REACT_31919
database_cross_reference: Reactome:REACT_32546
database_cross_reference: Reactome:REACT_32932
database_cross_reference: Reactome:REACT_33572
database_cross_reference: Reactome:REACT_33874
database_cross_reference: Reactome:REACT_50018
database_cross_reference: Reactome:REACT_53588
database_cross_reference: Reactome:REACT_6729
database_cross_reference: Reactome:REACT_6738
database_cross_reference: Reactome:REACT_6750
database_cross_reference: Reactome:REACT_6769
database_cross_reference: Reactome:REACT_6798
database_cross_reference: Reactome:REACT_6869
database_cross_reference: Reactome:REACT_6936
database_cross_reference: Reactome:REACT_6939
database_cross_reference: Reactome:REACT_77532
database_cross_reference: Reactome:REACT_79188
database_cross_reference: Reactome:REACT_79450
database_cross_reference: Reactome:REACT_80432
database_cross_reference: Reactome:REACT_80571
database_cross_reference: Reactome:REACT_80896
database_cross_reference: Reactome:REACT_80988
database_cross_reference: Reactome:REACT_81803
database_cross_reference: Reactome:REACT_83095
database_cross_reference: Reactome:REACT_84829
database_cross_reference: Reactome:REACT_85561
database_cross_reference: Reactome:REACT_86410
database_cross_reference: Reactome:REACT_86739
database_cross_reference: Reactome:REACT_87233
database_cross_reference: Reactome:REACT_87449
database_cross_reference: Reactome:REACT_87590
database_cross_reference: Reactome:REACT_88085
database_cross_reference: Reactome:REACT_88384
database_cross_reference: Reactome:REACT_88529
database_cross_reference: Reactome:REACT_89355
database_cross_reference: Reactome:REACT_89439
database_cross_reference: Reactome:REACT_89725
database_cross_reference: Reactome:REACT_90512
database_cross_reference: Reactome:REACT_90809
database_cross_reference: Reactome:REACT_90838
database_cross_reference: Reactome:REACT_91184
database_cross_reference: Reactome:REACT_91302
database_cross_reference: Reactome:REACT_92527
database_cross_reference: Reactome:REACT_92644

Loading of claspin onto DNA during replication origin firing, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_99948
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_87233
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_50018
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Danio rerio
type: Axiom
annotated target: Reactome:REACT_83095
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6869
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6738
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Danio rerio
type: Axiom
annotated target: Reactome:REACT_91184
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_106018
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_85561
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_88529
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_29764
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Danio rerio
type: Axiom
annotated target: Reactome:REACT_84829
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Caenorhabditis elegans
type: Axiom
annotated target: Reactome:REACT_97726
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Mus musculus
type: Axiom
annotated target: Reactome:REACT_92527
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_81803
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_88085
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_108929
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_101280
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_113703
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Bos taurus
type: Axiom
annotated target: Reactome:REACT_90512
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Bos taurus
type: Axiom
annotated target: Reactome:REACT_108461
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_94983
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Bos taurus
type: Axiom
annotated target: Reactome:REACT_108768
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Mus musculus
type: Axiom
annotated target: Reactome:REACT_108634
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_29444
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6769
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_95253
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_105835
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_87449
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Mus musculus
type: Axiom
annotated target: Reactome:REACT_80571
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_108739
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_103614
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_80432
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_105292
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Dictyostelium discoideum
type: Axiom
annotated target: Reactome:REACT_33572
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_31024
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6936
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Schizosaccharomyces pombe
type: Axiom
annotated target: Reactome:REACT_29423
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_97204
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_86739
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_77532
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Bos taurus
type: Axiom
annotated target: Reactome:REACT_101497
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_31919
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_32932
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6798
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Danio rerio
type: Axiom
annotated target: Reactome:REACT_107075
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_29691
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Schizosaccharomyces pombe
type: Axiom
annotated target: Reactome:REACT_88384
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_106434
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Bos taurus
type: Axiom
annotated target: Reactome:REACT_87590
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Danio rerio
type: Axiom
annotated target: Reactome:REACT_89355
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Sus scrofa
type: Axiom
annotated target: Reactome:REACT_80896
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Mus musculus
type: Axiom
annotated target: Reactome:REACT_96115
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Caenorhabditis elegans
type: Axiom
annotated target: Reactome:REACT_107423
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Bos taurus
type: Axiom
annotated target: Reactome:REACT_80988
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6750
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_106732
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Danio rerio
type: Axiom
annotated target: Reactome:REACT_92706
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_104547
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_92644
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_91302
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Mus musculus
type: Axiom
annotated target: Reactome:REACT_86410
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_53588
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Danio rerio
type: Axiom
annotated target: Reactome:REACT_90809
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_90838
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_33874
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_102679
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Sus scrofa
type: Axiom
annotated target: Reactome:REACT_89439
annotated source: DNA replication
annotated property: database_cross_reference

Stalling of DNA replication fork and RPA binding, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_109137
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment and activation of Chk1, Mus musculus
type: Axiom
annotated target: Reactome:REACT_96804
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_30149
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Saccharomyces cerevisiae
type: Axiom
annotated target: Reactome:REACT_112472
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of Rad17-RFC complex to DNA, Mus musculus
type: Axiom
annotated target: Reactome:REACT_32546
annotated source: DNA replication
annotated property: database_cross_reference

Loading of claspin onto DNA during replication origin firing, Danio rerio
type: Axiom
annotated target: Reactome:REACT_105467
annotated source: DNA replication
annotated property: database_cross_reference

Activation of claspin, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_95329
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Mus musculus
type: Axiom
annotated target: Reactome:REACT_100559
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_79188
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6939
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Bos taurus
type: Axiom
annotated target: Reactome:REACT_96998
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_6729
annotated source: DNA replication
annotated property: database_cross_reference

Activation of ATR in response to replication stress, Dictyostelium discoideum
type: Axiom
annotated target: Reactome:REACT_79450
annotated source: DNA replication
annotated property: database_cross_reference

Axiom
database_cross_reference: GOC:mah
annotated target: The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
annotated source: DNA replication
annotated property: definition

Loading of claspin onto DNA during replication origin firing, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_89725
annotated source: DNA replication
annotated property: database_cross_reference

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_106382
annotated source: DNA replication
annotated property: database_cross_reference

Binding of ATR-ATRIP to the RPA-ssDNA complex, Bos taurus
type: Axiom
annotated target: Reactome:REACT_106104
annotated source: DNA replication
annotated property: database_cross_reference

transcription, DNA-templated
type: Class
subclass of: RNA biosynthetic process
subclass of: cellular macromolecule biosynthetic process
subclass of: Restriction
  on property: part_of
  some values from: gene expression
has_exact_synonym: DNA-dependent transcription
has_alternative_id: GO:0006350
id: GO:0006351
has_alternative_id: GO:0061018
has_alternative_id: GO:0061022
definition: The cellular synthesis of RNA on a template of DNA.
database_cross_reference: Wikipedia:Transcription_(genetics)
has_obo_namespace: biological_process
has_broad_synonym: cellular transcription
has_exact_synonym: cellular transcription, DNA-dependent
has_broad_synonym: transcription
has_related_synonym: transcription regulator activity
has_exact_synonym: transcription, DNA-dependent
in_subset: goslim aspergillus
in_subset: goslim metagenomics
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
database_cross_reference: GOC:txnOH
annotated target: The cellular synthesis of RNA on a template of DNA.
annotated source: transcription, DNA-templated
annotated property: definition

Axiom
database_cross_reference: GOC:txnOH
annotated target: transcription, DNA-dependent
annotated source: transcription, DNA-templated
annotated property: has_exact_synonym

translation
type: Class
subclass of: cellular macromolecule biosynthetic process
subclass of: cellular protein metabolic process
subclass of: Restriction
  on property: part_of
  some values from: gene expression
id: GO:0006412
has_alternative_id: GO:0006416
has_alternative_id: GO:0006453
has_alternative_id: GO:0043037
database_cross_reference: Reactome:REACT_100338
database_cross_reference: Reactome:REACT_100851
database_cross_reference: Reactome:REACT_101045
database_cross_reference: Reactome:REACT_101324
database_cross_reference: Reactome:REACT_1014
database_cross_reference: Reactome:REACT_103420
database_cross_reference: Reactome:REACT_105544
database_cross_reference: Reactome:REACT_29980
database_cross_reference: Reactome:REACT_33559
database_cross_reference: Reactome:REACT_77710
database_cross_reference: Reactome:REACT_79784
database_cross_reference: Reactome:REACT_81734
database_cross_reference: Reactome:REACT_81833
database_cross_reference: Reactome:REACT_82171
database_cross_reference: Reactome:REACT_83429
database_cross_reference: Reactome:REACT_83530
database_cross_reference: Reactome:REACT_86996
database_cross_reference: Reactome:REACT_95535
database_cross_reference: Reactome:REACT_96394
definition: The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
database_cross_reference: Wikipedia:Translation_(genetics)
has_obo_namespace: biological_process
has_exact_synonym: protein anabolism
has_exact_synonym: protein biosynthesis
has_exact_synonym: protein biosynthetic process
has_exact_synonym: protein formation
has_exact_synonym: protein synthesis
has_exact_synonym: protein translation
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Translation, Mus musculus
type: Axiom
annotated target: Reactome:REACT_95535
annotated source: translation
annotated property: database_cross_reference

Translation, Bos taurus
type: Axiom
annotated target: Reactome:REACT_29980
annotated source: translation
annotated property: database_cross_reference

Translation, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_33559
annotated source: translation
annotated property: database_cross_reference

Translation, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_77710
annotated source: translation
annotated property: database_cross_reference

Axiom
database_cross_reference: GOC:go_curators
annotated target: The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
annotated source: translation
annotated property: definition

Translation, Caenorhabditis elegans
type: Axiom
annotated target: Reactome:REACT_81833
annotated source: translation
annotated property: database_cross_reference

Translation, Escherichia coli
type: Axiom
annotated target: Reactome:REACT_96394
annotated source: translation
annotated property: database_cross_reference

Translation, Plasmodium falciparum
type: Axiom
annotated target: Reactome:REACT_103420
annotated source: translation
annotated property: database_cross_reference

Translation, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_101324
annotated source: translation
annotated property: database_cross_reference

Axiom
database_cross_reference: GOC:curators
annotated target: protein biosynthetic process
annotated source: translation
annotated property: has_exact_synonym

Translation, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_82171
annotated source: translation
annotated property: database_cross_reference

Translation, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_83530
annotated source: translation
annotated property: database_cross_reference

Translation, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_1014
annotated source: translation
annotated property: database_cross_reference

Translation, Arabidopsis thaliana
type: Axiom
annotated target: Reactome:REACT_105544
annotated source: translation
annotated property: database_cross_reference

Translation, Saccharomyces cerevisiae
type: Axiom
annotated target: Reactome:REACT_100851
annotated source: translation
annotated property: database_cross_reference

Translation, Oryza sativa
type: Axiom
annotated target: Reactome:REACT_86996
annotated source: translation
annotated property: database_cross_reference

Translation, Dictyostelium discoideum
type: Axiom
annotated target: Reactome:REACT_101045
annotated source: translation
annotated property: database_cross_reference

Translation, Danio rerio
type: Axiom
annotated target: Reactome:REACT_79784
annotated source: translation
annotated property: database_cross_reference

Translation, Sus scrofa
type: Axiom
annotated target: Reactome:REACT_100338
annotated source: translation
annotated property: database_cross_reference

Translation, Schizosaccharomyces pombe
type: Axiom
annotated target: Reactome:REACT_81734
annotated source: translation
annotated property: database_cross_reference

Translation, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_83429
annotated source: translation
annotated property: database_cross_reference

cellular aromatic compound metabolic process
type: Class
subclass of: cellular metabolic process
id: GO:0006725
definition: The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
has_exact_synonym: aromatic compound metabolism
has_narrow_synonym: aromatic hydrocarbon metabolic process
has_narrow_synonym: aromatic hydrocarbon metabolism
has_obo_namespace: biological_process
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:ai
database_cross_reference: ISBN:0198506732
annotated target: The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
annotated source: cellular aromatic compound metabolic process
annotated property: definition

nitrogen compound metabolic process
type: Class
subclass of: metabolic process
id: GO:0006807
comment: Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node.
definition: The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
has_obo_namespace: biological_process
has_exact_synonym: nitrogen compound metabolism
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: CHEBI:51143
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0198506732
annotated target: The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
annotated source: nitrogen compound metabolic process
annotated property: definition

cellular component movement
type: Class
subclass of: single-organism cellular process
id: GO:0006928
comment: Note that in GO cellular components include whole cells (cell is_a cellular component).
definition: The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore.
has_obo_namespace: biological_process
has_related_synonym: cell movement
has_exact_synonym: cellular component motion
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:dgh
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
database_cross_reference: GOC:mlg
annotated target: The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore.
annotated source: cellular component movement
annotated property: definition

Axiom
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
annotated target: cellular component motion
annotated source: cellular component movement
annotated property: has_exact_synonym

chemotaxis
type: Class
subclass of: response to chemical
subclass of: taxis
id: GO:0006935
definition: The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
database_cross_reference: Wikipedia:Chemotaxis
has_obo_namespace: biological_process
has_exact_synonym: taxis in response to chemical stimulus
in_subset: goslim metagenomics
in_subset: gosubset prok

Axiom
database_cross_reference: ISBN:0198506732
annotated target: The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
annotated source: chemotaxis
annotated property: definition

chromosome segregation
type: Class
subclass of: single-organism cellular process
id: GO:0007059
definition: The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
database_cross_reference: Wikipedia:Chromosome_segregation
has_obo_namespace: biological_process
has_exact_synonym: chromosome division
has_related_synonym: chromosome transmission
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah
database_cross_reference: GOC:mtg_cell_cycle
database_cross_reference: GOC:vw
annotated target: The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
annotated source: chromosome segregation
annotated property: definition

biological_process
type: Class
definition: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
has_alternative_id: GO:0000004
has_alternative_id: GO:0007582
id: GO:0008150
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
database_cross_reference: Wikipedia:Biological_process
has_exact_synonym: biological process
has_obo_namespace: biological_process
has_exact_synonym: physiological process
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated target: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:isa_complete
annotated source: biological_process
annotated property: definition

metabolic process
type: Class
subclass of: biological_process
id: GO:0008152
comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
definition: The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
database_cross_reference: Wikipedia:Metabolism
has_obo_namespace: biological_process
has_narrow_synonym: metabolic process resulting in cell growth
has_exact_synonym: metabolism
has_narrow_synonym: metabolism resulting in cell growth
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:go_curators
database_cross_reference: ISBN:0198547684
annotated target: The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
annotated source: metabolic process
annotated property: definition

biosynthetic process
type: Class
subclass of: metabolic process
id: GO:0009058
definition: The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
database_cross_reference: Wikipedia:Anabolism
has_exact_synonym: anabolism
has_obo_namespace: biological_process
has_exact_synonym: biosynthesis
has_exact_synonym: formation
has_exact_synonym: synthesis
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim plant
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:curators
database_cross_reference: ISBN:0198547684
annotated target: The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
annotated source: biosynthetic process
annotated property: definition

macromolecule biosynthetic process
type: Class
subclass of: macromolecule metabolic process
subclass of: organic substance biosynthetic process
id: GO:0009059
has_alternative_id: GO:0043284
definition: The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
has_obo_namespace: biological_process
has_exact_synonym: biopolymer biosynthetic process
has_exact_synonym: macromolecule anabolism
has_exact_synonym: macromolecule biosynthesis
has_exact_synonym: macromolecule formation
has_exact_synonym: macromolecule synthesis
in_subset: gosubset prok

Axiom
database_cross_reference: CHEBI:33694
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
annotated source: macromolecule biosynthetic process
annotated property: definition

Axiom
database_cross_reference: GOC:mtg_chebi_dec09
annotated target: biopolymer biosynthetic process
annotated source: macromolecule biosynthetic process
annotated property: has_exact_synonym

energy taxis
type: Class
subclass of: taxis
id: GO:0009453
definition: The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
has_obo_namespace: biological_process
has_exact_synonym: energytaxis
has_exact_synonym: taxis in response to energy source
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
database_cross_reference: PMID:11029423
annotated target: The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
annotated source: energy taxis
annotated property: definition

aerotaxis
type: Class
subclass of: chemotaxis
subclass of: energy taxis
id: GO:0009454
definition: The directed movement of a motile cell or organism in response to environmental oxygen.
has_obo_namespace: biological_process
has_exact_synonym: taxis in response to atmospheric oxygen
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0192801023
annotated target: The directed movement of a motile cell or organism in response to environmental oxygen.
annotated source: aerotaxis
annotated property: definition

response to external stimulus
type: Class
subclass of: response to stimulus
definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
id: GO:0009605
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has_obo_namespace: biological_process
has_exact_synonym: response to environmental stimulus
in_subset: goslim plant
in_subset: gosubset prok
in_subset: qc do not manually annotate

Axiom
annotated target: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
database_cross_reference: GOC:hb
annotated source: response to external stimulus
annotated property: definition

spore germination
type: Class
subclass of: developmental process
id: GO:0009847
definition: The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
has_obo_namespace: biological_process
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:lr
annotated target: The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
annotated source: spore germination
annotated property: definition

negative regulation of metabolic process
type: Class
subclass of: regulation of metabolic process
subclass of: negative regulation of biological process
subclass of: Restriction
  on property: negatively regulates
  some values from: metabolic process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
id: GO:0009892
has_obo_namespace: biological_process
has_exact_synonym: down regulation of metabolic process
has_exact_synonym: down-regulation of metabolic process
has_exact_synonym: downregulation of metabolic process
has_narrow_synonym: inhibition of metabolic process
has_exact_synonym: negative regulation of metabolism
in_subset: gosubset prok

Axiom
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
database_cross_reference: GOC:go_curators
annotated source: negative regulation of metabolic process
annotated property: definition

cellular process
type: Class
subclass of: biological_process
definition: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has_alternative_id: GO:0008151
id: GO:0009987
has_alternative_id: GO:0050875
has_obo_namespace: biological_process
has_narrow_synonym: cell growth and/or maintenance
has_exact_synonym: cell physiology
has_exact_synonym: cellular physiological process
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Axiom
annotated target: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:isa_complete
annotated source: cellular process
annotated property: definition

gene expression
type: Class
subclass of: macromolecule metabolic process
id: GO:0010467
database_cross_reference: Reactome:REACT_100537
database_cross_reference: Reactome:REACT_101147
database_cross_reference: Reactome:REACT_101952
database_cross_reference: Reactome:REACT_105649
database_cross_reference: Reactome:REACT_108313
database_cross_reference: Reactome:REACT_29068
database_cross_reference: Reactome:REACT_34240
database_cross_reference: Reactome:REACT_71
database_cross_reference: Reactome:REACT_78136
database_cross_reference: Reactome:REACT_78959
database_cross_reference: Reactome:REACT_79662
database_cross_reference: Reactome:REACT_85241
database_cross_reference: Reactome:REACT_85359
database_cross_reference: Reactome:REACT_86357
database_cross_reference: Reactome:REACT_89816
database_cross_reference: Reactome:REACT_91657
database_cross_reference: Reactome:REACT_91965
database_cross_reference: Reactome:REACT_93586
database_cross_reference: Reactome:REACT_93968
database_cross_reference: Reactome:REACT_94814
database_cross_reference: Reactome:REACT_98256
definition: The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
database_cross_reference: Wikipedia:Gene_expression
has_obo_namespace: biological_process
in_subset: gosubset prok

Gene Expression, Saccharomyces cerevisiae
type: Axiom
annotated target: Reactome:REACT_98256
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_91965
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_86357
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Danio rerio
type: Axiom
annotated target: Reactome:REACT_101147
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_71
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Schizosaccharomyces pombe
type: Axiom
annotated target: Reactome:REACT_94814
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Mycobacterium tuberculosis
type: Axiom
annotated target: Reactome:REACT_89816
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_78959
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Plasmodium falciparum
type: Axiom
annotated target: Reactome:REACT_79662
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_105649
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Sus scrofa
type: Axiom
annotated target: Reactome:REACT_101952
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Escherichia coli
type: Axiom
annotated target: Reactome:REACT_29068
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Staphylococcus aureus N315
type: Axiom
annotated target: Reactome:REACT_34240
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Oryza sativa
type: Axiom
annotated target: Reactome:REACT_85241
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Caenorhabditis elegans
type: Axiom
annotated target: Reactome:REACT_108313
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Dictyostelium discoideum
type: Axiom
annotated target: Reactome:REACT_93586
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Bos taurus
type: Axiom
annotated target: Reactome:REACT_93968
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Arabidopsis thaliana
type: Axiom
annotated target: Reactome:REACT_91657
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Mus musculus
type: Axiom
annotated target: Reactome:REACT_78136
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_85359
annotated source: gene expression
annotated property: database_cross_reference

Gene Expression, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_100537
annotated source: gene expression
annotated property: database_cross_reference

Axiom
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated target: The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
annotated source: gene expression
annotated property: definition

regulation of gene expression
type: Class
subclass of: regulation of macromolecule metabolic process
subclass of: Restriction
  on property: regulates
  some values from: gene expression
definition: Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
id: GO:0010468
database_cross_reference: Wikipedia:Regulation_of_gene_expression
has_obo_namespace: biological_process
has_related_synonym: regulation of gene product expression
has_narrow_synonym: regulation of protein expression
in_subset: gosubset prok

Axiom
annotated target: Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated source: regulation of gene expression
annotated property: definition

Axiom
database_cross_reference: GOC:curators
annotated target: regulation of gene product expression
annotated source: regulation of gene expression
annotated property: has_related_synonym

Axiom
database_cross_reference: GOC:curators
annotated target: regulation of protein expression
annotated source: regulation of gene expression
annotated property: has_narrow_synonym

negative regulation of macromolecule metabolic process
type: Class
subclass of: negative regulation of metabolic process
subclass of: regulation of macromolecule metabolic process
subclass of: Restriction
  on property: negatively regulates
  some values from: macromolecule metabolic process
definition: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
id: GO:0010605
has_obo_namespace: biological_process

Axiom
annotated target: Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated source: negative regulation of macromolecule metabolic process
annotated property: definition

negative regulation of gene expression
type: Class
subclass of: regulation of gene expression
subclass of: negative regulation of macromolecule metabolic process
subclass of: Restriction
  on property: negatively regulates
  some values from: gene expression
definition: Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
id: GO:0010629
has_obo_namespace: biological_process

Axiom
annotated target: Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated source: negative regulation of gene expression
annotated property: definition

RNA metabolic process
type: Class
subclass of: cellular macromolecule metabolic process
subclass of: nucleic acid metabolic process
id: GO:0016070
has_exact_synonym: RNA metabolism
database_cross_reference: Reactome:REACT_107259
database_cross_reference: Reactome:REACT_107652
database_cross_reference: Reactome:REACT_110289
database_cross_reference: Reactome:REACT_21257
database_cross_reference: Reactome:REACT_30579
database_cross_reference: Reactome:REACT_31367
database_cross_reference: Reactome:REACT_33720
database_cross_reference: Reactome:REACT_80071
database_cross_reference: Reactome:REACT_83630
database_cross_reference: Reactome:REACT_84169
database_cross_reference: Reactome:REACT_85788
database_cross_reference: Reactome:REACT_88316
database_cross_reference: Reactome:REACT_89992
database_cross_reference: Reactome:REACT_91556
database_cross_reference: Reactome:REACT_92152
database_cross_reference: Reactome:REACT_94876
database_cross_reference: Reactome:REACT_99403
database_cross_reference: Reactome:REACT_99885
definition: The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
has_obo_namespace: biological_process
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: gosubset prok

Metabolism of RNA, Schizosaccharomyces pombe
type: Axiom
annotated target: Reactome:REACT_107652
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Arabidopsis thaliana
type: Axiom
annotated target: Reactome:REACT_94876
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_92152
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Caenorhabditis elegans
type: Axiom
annotated target: Reactome:REACT_80071
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Bos taurus
type: Axiom
annotated target: Reactome:REACT_91556
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Oryza sativa
type: Axiom
annotated target: Reactome:REACT_85788
annotated source: RNA metabolic process
annotated property: database_cross_reference

Axiom
database_cross_reference: ISBN:0198506732
annotated target: The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
annotated source: RNA metabolic process
annotated property: definition

Metabolism of RNA, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_30579
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Danio rerio
type: Axiom
annotated target: Reactome:REACT_110289
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Sus scrofa
type: Axiom
annotated target: Reactome:REACT_107259
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Dictyostelium discoideum
type: Axiom
annotated target: Reactome:REACT_31367
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Mus musculus
type: Axiom
annotated target: Reactome:REACT_88316
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_99403
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_21257
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_84169
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Plasmodium falciparum
type: Axiom
annotated target: Reactome:REACT_33720
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_99885
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Saccharomyces cerevisiae
type: Axiom
annotated target: Reactome:REACT_89992
annotated source: RNA metabolic process
annotated property: database_cross_reference

Metabolism of RNA, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_83630
annotated source: RNA metabolic process
annotated property: database_cross_reference

gene silencing
type: Class
subclass of: negative regulation of gene expression
subclass of: single-organism cellular process
definition: Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.
id: GO:0016458
comment: Note that this process is the opposite of long-term maintenance of gene activation.
database_cross_reference: Wikipedia:Gene_silencing
has_obo_namespace: biological_process
has_related_synonym: long-term maintenance of gene inactivation
in_subset: goslim pir

Axiom
annotated target: Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jid
database_cross_reference: GOC:tb
annotated source: gene silencing
annotated property: definition

heterocycle biosynthetic process
type: Class
subclass of: cellular biosynthetic process
subclass of: heterocycle metabolic process
id: GO:0018130
definition: The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
has_obo_namespace: biological_process
has_exact_synonym: heterocycle anabolism
has_exact_synonym: heterocycle biosynthesis
has_exact_synonym: heterocycle formation
has_exact_synonym: heterocycle synthesis
in_subset: gosubset prok

Axiom
database_cross_reference: ISBN:0198547684
annotated target: The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
annotated source: heterocycle biosynthetic process
annotated property: definition

regulation of metabolic process
type: Class
subclass of: regulation of biological process
subclass of: Restriction
  on property: regulates
  some values from: metabolic process
definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
id: GO:0019222
has_obo_namespace: biological_process
has_exact_synonym: regulation of metabolism
in_subset: gosubset prok

Axiom
annotated target: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
database_cross_reference: GOC:go_curators
annotated source: regulation of metabolic process
annotated property: definition

aromatic compound biosynthetic process
type: Class
subclass of: cellular aromatic compound metabolic process
subclass of: cellular biosynthetic process
id: GO:0019438
definition: The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring.
has_exact_synonym: aromatic compound anabolism
has_exact_synonym: aromatic compound biosynthesis
has_exact_synonym: aromatic compound formation
has_exact_synonym: aromatic compound synthesis
has_narrow_synonym: aromatic hydrocarbon biosynthesis
has_narrow_synonym: aromatic hydrocarbon biosynthetic process
has_obo_namespace: biological_process
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:ai
annotated target: The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring.
annotated source: aromatic compound biosynthetic process
annotated property: definition

protein metabolic process
type: Class
subclass of: macromolecule metabolic process
subclass of: primary metabolic process
has_alternative_id: GO:0006411
id: GO:0019538
definition: The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
database_cross_reference: Wikipedia:Protein_metabolism
has_obo_namespace: biological_process
has_exact_synonym: protein metabolic process and modification
has_exact_synonym: protein metabolism
has_exact_synonym: protein metabolism and modification
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:ma
annotated target: The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
annotated source: protein metabolic process
annotated property: definition

asexual reproduction
type: Class
subclass of: reproduction
id: GO:0019954
definition: The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process.
database_cross_reference: Wikipedia:Asexual_reproduction
has_obo_namespace: biological_process
in_subset: gosubset prok

Axiom
database_cross_reference: ISBN:0387520546
annotated target: The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process.
annotated source: asexual reproduction
annotated property: definition

cell cycle process
type: Class
subclass of: single-organism cellular process
id: GO:0022402
definition: The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
has_obo_namespace: biological_process
in_subset: gosubset prok
in_subset: qc do not manually annotate

Axiom
database_cross_reference: GOC:isa_complete
database_cross_reference: GOC:mtg_cell_cycle
annotated target: The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
annotated source: cell cycle process
annotated property: definition

cell differentiation
type: Class
subclass of: cellular developmental process
id: GO:0030154
definition: The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
database_cross_reference: Wikipedia:Cellular_differentiation
has_obo_namespace: biological_process
in_subset: goslim generic
in_subset: goslim plant
in_subset: gosubset prok

Axiom
database_cross_reference: ISBN:0198506732
annotated target: The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
annotated source: cell differentiation
annotated property: definition

sporulation resulting in formation of a cellular spore
type: Class
subclass of: cell differentiation
subclass of: sporulation
subclass of: anatomical structure formation involved in morphogenesis
id: GO:0030435
comment: Note that the synonym 'spore differentiation', like the term name and definition, refers to differentiation into a spore rather than any subsequent developmental changes that a spore may undergo.
definition: The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
database_cross_reference: Wikipedia:Sporogenesis
has_obo_namespace: biological_process
has_exact_synonym: cellular spore formation by sporulation
has_exact_synonym: spore biosynthesis
has_exact_synonym: spore differentiation
has_exact_synonym: spore formation
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mah
database_cross_reference: GOC:pamgo_curators
database_cross_reference: ISBN:0072992913
annotated target: The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
annotated source: sporulation resulting in formation of a cellular spore
annotated property: definition

Axiom
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated target: cellular spore formation by sporulation
annotated source: sporulation resulting in formation of a cellular spore
annotated property: has_exact_synonym

asexual sporulation
type: Class
subclass of: asexual reproduction
subclass of: sporulation
id: GO:0030436
definition: The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species.
has_exact_synonym: asexual spore formation
has_obo_namespace: biological_process
has_exact_synonym: mitotic spore formation
has_exact_synonym: mitotic sporulation
in_subset: goslim aspergillus
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mah
database_cross_reference: PMID:9529886
annotated target: The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species.
annotated source: asexual sporulation
annotated property: definition

envelope
type: Class
subclass of: cell part
definition: A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers.
id: GO:0031975
has_obo_namespace: cellular_component
in_subset: gosubset prok

Axiom
annotated target: A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers.
database_cross_reference: GOC:mah
database_cross_reference: GOC:pz
annotated source: envelope
annotated property: definition

transposition
type: Class
subclass of: single-organism cellular process
definition: Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites.
id: GO:0032196
database_cross_reference: Wikipedia:Transposon
has_obo_namespace: biological_process
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated target: Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites.
database_cross_reference: GOC:jp
database_cross_reference: ISBN:1555812090
annotated source: transposition
annotated property: definition

developmental process
type: Class
subclass of: biological_process
definition: A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
id: GO:0032502
has_obo_namespace: biological_process
has_narrow_synonym: development
in_subset: goslim aspergillus
in_subset: goslim pir
in_subset: gosubset prok

Axiom
annotated target: A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
database_cross_reference: GOC:isa_complete
annotated source: developmental process
annotated property: definition

RNA biosynthetic process
type: Class
subclass of: macromolecule biosynthetic process
subclass of: RNA metabolic process
subclass of: nucleobase-containing compound biosynthetic process
id: GO:0032774
has_exact_synonym: RNA anabolism
has_exact_synonym: RNA biosynthesis
has_exact_synonym: RNA formation
has_exact_synonym: RNA synthesis
definition: The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.
has_obo_namespace: biological_process

Axiom
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.
annotated source: RNA biosynthetic process
annotated property: definition

endospore formation
type: Class
subclass of: asexual sporulation resulting in formation of a cellular spore
id: GO:0034301
definition: The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions.
has_obo_namespace: biological_process

Axiom
database_cross_reference: GOC:ds
database_cross_reference: GOC:mah
database_cross_reference: ISBN:0470090278
annotated target: The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions.
annotated source: endospore formation
annotated property: definition

myxospore formation
type: Class
subclass of: asexual sporulation resulting in formation of a cellular spore
id: GO:0034303
definition: The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria.
has_obo_namespace: biological_process

Axiom
database_cross_reference: GOC:ds
database_cross_reference: ISBN:0122268008
annotated target: The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria.
annotated source: myxospore formation
annotated property: definition

cellular nitrogen compound metabolic process
type: Class
subclass of: nitrogen compound metabolic process
subclass of: cellular metabolic process
id: GO:0034641
database_cross_reference: Reactome:REACT_102000
database_cross_reference: Reactome:REACT_103710
database_cross_reference: Reactome:REACT_107293
database_cross_reference: Reactome:REACT_108179
database_cross_reference: Reactome:REACT_109042
database_cross_reference: Reactome:REACT_13
database_cross_reference: Reactome:REACT_28699
database_cross_reference: Reactome:REACT_29108
database_cross_reference: Reactome:REACT_32429
database_cross_reference: Reactome:REACT_33347
database_cross_reference: Reactome:REACT_34326
database_cross_reference: Reactome:REACT_55564
database_cross_reference: Reactome:REACT_77741
database_cross_reference: Reactome:REACT_82379
database_cross_reference: Reactome:REACT_86268
database_cross_reference: Reactome:REACT_90299
database_cross_reference: Reactome:REACT_91959
database_cross_reference: Reactome:REACT_93580
database_cross_reference: Reactome:REACT_95666
database_cross_reference: Reactome:REACT_98086
database_cross_reference: Reactome:REACT_99241
definition: The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
has_obo_namespace: biological_process
has_exact_synonym: cellular nitrogen compound metabolism
in_subset: goslim generic
in_subset: gosubset prok

Metabolism of amino acids and derivatives, Dictyostelium discoideum
type: Axiom
annotated target: Reactome:REACT_98086
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Caenorhabditis elegans
type: Axiom
annotated target: Reactome:REACT_29108
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_32429
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Axiom
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
annotated source: cellular nitrogen compound metabolic process
annotated property: definition

Metabolism of amino acids and derivatives, Saccharomyces cerevisiae
type: Axiom
annotated target: Reactome:REACT_28699
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_108179
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Sus scrofa
type: Axiom
annotated target: Reactome:REACT_109042
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_95666
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_77741
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Mus musculus
type: Axiom
annotated target: Reactome:REACT_33347
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Oryza sativa
type: Axiom
annotated target: Reactome:REACT_90299
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_13
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Escherichia coli
type: Axiom
annotated target: Reactome:REACT_103710
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_55564
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Arabidopsis thaliana
type: Axiom
annotated target: Reactome:REACT_107293
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Mycobacterium tuberculosis
type: Axiom
annotated target: Reactome:REACT_102000
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Staphylococcus aureus N315
type: Axiom
annotated target: Reactome:REACT_34326
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Plasmodium falciparum
type: Axiom
annotated target: Reactome:REACT_91959
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_86268
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Danio rerio
type: Axiom
annotated target: Reactome:REACT_93580
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Schizosaccharomyces pombe
type: Axiom
annotated target: Reactome:REACT_99241
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

Metabolism of amino acids and derivatives, Bos taurus
type: Axiom
annotated target: Reactome:REACT_82379
annotated source: cellular nitrogen compound metabolic process
annotated property: database_cross_reference

cellular macromolecule biosynthetic process
type: Class
subclass of: macromolecule biosynthetic process
subclass of: cellular biosynthetic process
subclass of: cellular macromolecule metabolic process
id: GO:0034645
has_alternative_id: GO:0034961
definition: The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.
has_obo_namespace: biological_process
has_exact_synonym: cellular biopolymer biosynthetic process
has_exact_synonym: cellular macromolecule anabolism
has_exact_synonym: cellular macromolecule biosynthesis
has_exact_synonym: cellular macromolecule formation
has_exact_synonym: cellular macromolecule synthesis

Axiom
database_cross_reference: GOC:mtg_chebi_dec09
annotated target: cellular biopolymer biosynthetic process
annotated source: cellular macromolecule biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:mah
annotated target: cellular macromolecule anabolism
annotated source: cellular macromolecule biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:mah
annotated target: cellular macromolecule formation
annotated source: cellular macromolecule biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:mah
annotated target: cellular macromolecule biosynthesis
annotated source: cellular macromolecule biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:mah
annotated target: cellular macromolecule synthesis
annotated source: cellular macromolecule biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: CHEBI:33694
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.
annotated source: cellular macromolecule biosynthetic process
annotated property: definition

nucleobase-containing compound biosynthetic process
type: Class
subclass of: nucleobase-containing compound metabolic process
subclass of: heterocycle biosynthetic process
subclass of: aromatic compound biosynthetic process
subclass of: cellular nitrogen compound biosynthetic process
subclass of: organic cyclic compound biosynthetic process
id: GO:0034654
definition: The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids.
has_obo_namespace: biological_process
has_exact_synonym: nucleobase, nucleoside, nucleotide and nucleic acid anabolism
has_exact_synonym: nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis
has_exact_synonym: nucleobase, nucleoside, nucleotide and nucleic acid formation
has_narrow_synonym: nucleobase, nucleoside, nucleotide and nucleic acid synthesis
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids.
annotated source: nucleobase-containing compound biosynthetic process
annotated property: definition

growth
type: Class
subclass of: biological_process
id: GO:0040007
has_alternative_id: GO:0048590
comment: See also the biological process term 'cell growth ; GO:0016049'.
definition: The increase in size or mass of an entire organism, a part of an organism or a cell.
has_obo_namespace: biological_process
has_related_synonym: growth pattern
has_related_synonym: non-developmental growth
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim plant
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mah
annotated target: non-developmental growth
annotated source: growth
annotated property: has_related_synonym

Axiom
database_cross_reference: GOC:bf
database_cross_reference: GOC:ma
annotated target: The increase in size or mass of an entire organism, a part of an organism or a cell.
annotated source: growth
annotated property: definition

locomotion
type: Class
subclass of: biological_process
id: GO:0040011
definition: Self-propelled movement of a cell or organism from one location to another.
has_obo_namespace: biological_process
in_subset: goslim generic
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:dgh
annotated target: Self-propelled movement of a cell or organism from one location to another.
annotated source: locomotion
annotated property: definition

response to chemical
type: Class
subclass of: response to stimulus
definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
id: GO:0042221
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has_obo_namespace: biological_process
has_exact_synonym: response to chemical stimulus
has_exact_synonym: response to chemical substance
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim yeast
in_subset: gosubset prok
in_subset: qc do not manually annotate

Axiom
database_cross_reference: GOC:dos
annotated target: response to chemical stimulus
annotated source: response to chemical
annotated property: has_exact_synonym

Axiom
annotated target: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
database_cross_reference: GOC:jl
annotated source: response to chemical
annotated property: definition

taxis
type: Class
subclass of: response to external stimulus
subclass of: locomotion
id: GO:0042330
definition: The directed movement of a motile cell or organism in response to an external stimulus.
database_cross_reference: Wikipedia:Taxis
has_obo_namespace: biological_process
has_exact_synonym: directed movement in response to stimulus
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0192801023
annotated target: The directed movement of a motile cell or organism in response to an external stimulus.
annotated source: taxis
annotated property: definition

cell projection
type: Class
subclass of: cell part
definition: A prolongation or process extending from a cell, e.g. a flagellum or axon.
id: GO:0042995
has_broad_synonym: cell process
has_broad_synonym: cellular process
has_exact_synonym: cellular projection
has_obo_namespace: cellular_component
in_subset: goslim pir
in_subset: gosubset prok

Axiom
annotated target: A prolongation or process extending from a cell, e.g. a flagellum or axon.
database_cross_reference: GOC:jl
database_cross_reference: http://www.cogsci.princeton.edu/~wn/
annotated source: cell projection
annotated property: definition

type IV pilus-dependent motility
type: Class
subclass of: cell motility
definition: Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility.
id: GO:0043107
has_exact_synonym: TFP-dependent motility
has_exact_synonym: TFP-dependent movement
has_obo_namespace: biological_process
has_narrow_synonym: social gliding motility
has_narrow_synonym: twitching motility
has_exact_synonym: type 4 pilus-dependent motility
has_exact_synonym: type four pilus-dependent motility
in_subset: gosubset prok

Axiom
annotated target: Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility.
database_cross_reference: GOC:go_curators
database_cross_reference: PMID:12704238
annotated source: type IV pilus-dependent motility
annotated property: definition

heterocyst differentiation
type: Class
subclass of: cell differentiation
id: GO:0043158
definition: The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
has_obo_namespace: biological_process
has_exact_synonym: heterocyst biosynthesis
has_exact_synonym: heterocyst cell differentiation
has_exact_synonym: heterocyst formation
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
annotated target: The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
annotated source: heterocyst differentiation
annotated property: definition

macromolecule metabolic process
type: Class
subclass of: organic substance metabolic process
id: GO:0043170
has_alternative_id: GO:0043283
definition: The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
has_obo_namespace: biological_process
has_exact_synonym: biopolymer metabolic process
has_exact_synonym: macromolecule metabolism
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mtg_chebi_dec09
annotated target: biopolymer metabolic process
annotated source: macromolecule metabolic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: CHEBI:33694
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
annotated source: macromolecule metabolic process
annotated property: definition

sporulation
type: Class
subclass of: single-organism developmental process
id: GO:0043934
definition: The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
database_cross_reference: Wikipedia:Spore
has_obo_namespace: biological_process
in_subset: goslim metagenomics
in_subset: goslim yeast

Axiom
database_cross_reference: GOC:pamgo_curators
annotated target: The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
annotated source: sporulation
annotated property: definition

asexual sporulation resulting in formation of a cellular spore
type: Class
subclass of: sporulation resulting in formation of a cellular spore
subclass of: asexual sporulation
id: GO:0043936
definition: The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
has_obo_namespace: biological_process

Axiom
database_cross_reference: GOC:pamgo_curators
annotated target: The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
annotated source: asexual sporulation resulting in formation of a cellular spore
annotated property: definition

cellular metabolic process
type: Class
subclass of: metabolic process
subclass of: cellular process
id: GO:0044237
definition: The chemical reactions and pathways by which individual cells transform chemical substances.
has_obo_namespace: biological_process
has_exact_synonym: cellular metabolism
has_related_synonym: intermediary metabolism
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mah
annotated target: intermediary metabolism
annotated source: cellular metabolic process
annotated property: has_related_synonym

Axiom
database_cross_reference: GOC:go_curators
annotated target: The chemical reactions and pathways by which individual cells transform chemical substances.
annotated source: cellular metabolic process
annotated property: definition

primary metabolic process
type: Class
subclass of: metabolic process
id: GO:0044238
definition: The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
has_obo_namespace: biological_process
has_exact_synonym: primary metabolism
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:go_curators
annotated target: The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
database_cross_reference: http://www.metacyc.org
annotated source: primary metabolic process
annotated property: definition

cellular biosynthetic process
type: Class
subclass of: biosynthetic process
subclass of: cellular metabolic process
id: GO:0044249
definition: The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
has_obo_namespace: biological_process
has_exact_synonym: cellular anabolism
has_exact_synonym: cellular biosynthesis
has_exact_synonym: cellular formation
has_exact_synonym: cellular synthesis
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
annotated target: The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.
annotated source: cellular biosynthetic process
annotated property: definition

cellular macromolecule metabolic process
type: Class
subclass of: macromolecule metabolic process
subclass of: cellular metabolic process
has_alternative_id: GO:0034960
id: GO:0044260
definition: The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
has_obo_namespace: biological_process
has_exact_synonym: cellular biopolymer metabolic process
has_exact_synonym: cellular macromolecule metabolism
in_subset: gosubset prok

Axiom
database_cross_reference: CHEBI:33694
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
annotated source: cellular macromolecule metabolic process
annotated property: definition

Axiom
database_cross_reference: GOC:mtg_chebi_dec09
annotated target: cellular biopolymer metabolic process
annotated source: cellular macromolecule metabolic process
annotated property: has_exact_synonym

cellular protein metabolic process
type: Class
subclass of: protein metabolic process
subclass of: cellular macromolecule metabolic process
id: GO:0044267
database_cross_reference: Reactome:REACT_101554
database_cross_reference: Reactome:REACT_102155
database_cross_reference: Reactome:REACT_105825
database_cross_reference: Reactome:REACT_106151
database_cross_reference: Reactome:REACT_108005
database_cross_reference: Reactome:REACT_109022
database_cross_reference: Reactome:REACT_17015
database_cross_reference: Reactome:REACT_32904
database_cross_reference: Reactome:REACT_34473
database_cross_reference: Reactome:REACT_80561
database_cross_reference: Reactome:REACT_81994
database_cross_reference: Reactome:REACT_82523
database_cross_reference: Reactome:REACT_85873
database_cross_reference: Reactome:REACT_86658
database_cross_reference: Reactome:REACT_89852
database_cross_reference: Reactome:REACT_91052
database_cross_reference: Reactome:REACT_93132
database_cross_reference: Reactome:REACT_96466
database_cross_reference: Reactome:REACT_99179
definition: The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
has_obo_namespace: biological_process
has_exact_synonym: cellular protein metabolism
in_subset: gosubset prok

Metabolism of proteins, Bos taurus
type: Axiom
annotated target: Reactome:REACT_108005
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Danio rerio
type: Axiom
annotated target: Reactome:REACT_82523
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Saccharomyces cerevisiae
type: Axiom
annotated target: Reactome:REACT_85873
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Oryza sativa
type: Axiom
annotated target: Reactome:REACT_99179
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Taeniopygia guttata
type: Axiom
annotated target: Reactome:REACT_34473
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Xenopus tropicalis
type: Axiom
annotated target: Reactome:REACT_106151
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Escherichia coli
type: Axiom
annotated target: Reactome:REACT_80561
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Dictyostelium discoideum
type: Axiom
annotated target: Reactome:REACT_105825
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Arabidopsis thaliana
type: Axiom
annotated target: Reactome:REACT_102155
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Sus scrofa
type: Axiom
annotated target: Reactome:REACT_81994
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Homo sapiens
type: Axiom
annotated target: Reactome:REACT_17015
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Schizosaccharomyces pombe
type: Axiom
annotated target: Reactome:REACT_109022
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Gallus gallus
type: Axiom
annotated target: Reactome:REACT_101554
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Canis familiaris
type: Axiom
annotated target: Reactome:REACT_32904
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Mus musculus
type: Axiom
annotated target: Reactome:REACT_93132
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Plasmodium falciparum
type: Axiom
annotated target: Reactome:REACT_96466
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Axiom
database_cross_reference: GOC:jl
annotated target: The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
annotated source: cellular protein metabolic process
annotated property: definition

Metabolism of proteins, Rattus norvegicus
type: Axiom
annotated target: Reactome:REACT_89852
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Drosophila melanogaster
type: Axiom
annotated target: Reactome:REACT_86658
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

Metabolism of proteins, Caenorhabditis elegans
type: Axiom
annotated target: Reactome:REACT_91052
annotated source: cellular protein metabolic process
annotated property: database_cross_reference

cellular nitrogen compound biosynthetic process
type: Class
subclass of: cellular nitrogen compound metabolic process
subclass of: cellular biosynthetic process
id: GO:0044271
definition: The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds.
has_obo_namespace: biological_process
has_broad_synonym: nitrogen compound anabolism
has_broad_synonym: nitrogen compound biosynthesis
has_broad_synonym: nitrogen compound formation
has_broad_synonym: nitrogen compound synthesis
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0198506732
annotated target: The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds.
annotated source: cellular nitrogen compound biosynthetic process
annotated property: definition

cell part
type: Class
subclass of: cellular_component
subclass of: Restriction
  on property: part_of
  some values from: cell
definition: Any constituent part of a cell, the basic structural and functional unit of all organisms.
id: GO:0044464
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has_exact_synonym: cellular subcomponent
has_obo_namespace: cellular_component
has_related_synonym: protoplast
in_subset: goantislim grouping
in_subset: goslim pir
in_subset: gosubset prok
in_subset: qc do not annotate

Axiom
database_cross_reference: NIF_Subcellular:sao628508602
annotated target: cellular subcomponent
annotated source: cell part
annotated property: has_exact_synonym

Axiom
annotated target: Any constituent part of a cell, the basic structural and functional unit of all organisms.
database_cross_reference: GOC:jl
annotated source: cell part
annotated property: definition

Axiom
database_cross_reference: GOC:mah
annotated target: protoplast
annotated source: cell part
annotated property: has_related_synonym

single-organism process
type: Class
subclass of: biological_process
definition: A biological process that involves only one organism.
id: GO:0044699
has_obo_namespace: biological_process
has_exact_synonym: single organism process

Axiom
annotated target: A biological process that involves only one organism.
database_cross_reference: GOC:jl
annotated source: single-organism process
annotated property: definition

single-organism metabolic process
type: Class
subclass of: metabolic process
subclass of: single-organism process
definition: A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
id: GO:0044710
has_obo_namespace: biological_process

Axiom
annotated target: A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
database_cross_reference: GOC:jl
annotated source: single-organism metabolic process
annotated property: definition

single-organism biosynthetic process
type: Class
subclass of: biosynthetic process
subclass of: single-organism metabolic process
definition: A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism.
id: GO:0044711
has_obo_namespace: biological_process

Axiom
annotated target: A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism.
database_cross_reference: GOC:jl
annotated source: single-organism biosynthetic process
annotated property: definition

single-organism cellular process
type: Class
subclass of: cellular process
subclass of: single-organism process
definition: Any process that is carried out at the cellular level, occurring within a single organism.
id: GO:0044763
has_obo_namespace: biological_process

Axiom
annotated target: Any process that is carried out at the cellular level, occurring within a single organism.
database_cross_reference: GOC:jl
annotated source: single-organism cellular process
annotated property: definition

single-organism developmental process
type: Class
subclass of: developmental process
subclass of: single-organism process
definition: A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
id: GO:0044767
has_obo_namespace: biological_process

Axiom
annotated target: A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
database_cross_reference: GOC:jl
annotated source: single-organism developmental process
annotated property: definition

cell cycle DNA replication
type: Class
subclass of: DNA replication
subclass of: cell cycle process
subclass of: single-organism biosynthetic process
id: GO:0044786
definition: The DNA-dependent DNA replication that takes place as part of the cell cycle.
has_obo_namespace: biological_process

Axiom
database_cross_reference: GOC:mtg_cell_cycle
annotated target: The DNA-dependent DNA replication that takes place as part of the cell cycle.
annotated source: cell cycle DNA replication
annotated property: definition

heterocycle metabolic process
type: Class
subclass of: cellular metabolic process
id: GO:0046483
definition: The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
has_obo_namespace: biological_process
has_exact_synonym: heterocycle metabolism
in_subset: goslim pir
in_subset: gosubset prok

Axiom
database_cross_reference: CHEBI:5686
database_cross_reference: ISBN:0198506732
annotated target: The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
annotated source: heterocycle metabolic process
annotated property: definition

negative regulation of biological process
type: Class
subclass of: regulation of biological process
subclass of: Restriction
  on property: negatively regulates
  some values from: biological_process
definition: Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
has_alternative_id: GO:0043118
id: GO:0048519
has_obo_namespace: biological_process
has_exact_synonym: down regulation of biological process
has_exact_synonym: down-regulation of biological process
has_exact_synonym: downregulation of biological process
has_narrow_synonym: inhibition of biological process
has_exact_synonym: negative regulation of physiological process
in_subset: gosubset prok

Axiom
annotated target: Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
database_cross_reference: GOC:jid
annotated source: negative regulation of biological process
annotated property: definition

anatomical structure formation involved in morphogenesis
type: Class
subclass of: developmental process
id: GO:0048646
comment: Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense.
definition: The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
has_obo_namespace: biological_process
has_exact_synonym: formation of an anatomical structure involved in morphogenesis
in_subset: goslim generic

Axiom
database_cross_reference: GOC:dph
database_cross_reference: GOC:jid
database_cross_reference: GOC:tb
annotated target: The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
annotated source: anatomical structure formation involved in morphogenesis
annotated property: definition

Axiom
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated target: formation of an anatomical structure involved in morphogenesis
annotated source: anatomical structure formation involved in morphogenesis
annotated property: has_exact_synonym

cellular developmental process
type: Class
subclass of: single-organism cellular process
subclass of: single-organism developmental process
definition: A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition.
id: GO:0048869
has_obo_namespace: biological_process
in_subset: gosubset prok

Axiom
annotated target: A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition.
database_cross_reference: GOC:isa_complete
annotated source: cellular developmental process
annotated property: definition

cell motility
type: Class
subclass of: cellular component movement
subclass of: locomotion
definition: Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
id: GO:0048870
has_obo_namespace: biological_process
has_exact_synonym: cell locomotion
has_related_synonym: cell movement
has_exact_synonym: movement of a cell
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: gosubset prok

Axiom
annotated target: Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
database_cross_reference: GOC:dgh
database_cross_reference: GOC:dph
database_cross_reference: GOC:isa_complete
database_cross_reference: GOC:mlg
annotated source: cell motility
annotated property: definition

regulation of biological process
type: Class
subclass of: biological regulation
subclass of: Restriction
  on property: regulates
  some values from: biological_process
definition: Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
id: GO:0050789
has_alternative_id: GO:0050791
has_obo_namespace: biological_process
has_exact_synonym: regulation of physiological process
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: gosubset prok

Axiom
annotated target: Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
database_cross_reference: GOC:ai
database_cross_reference: GOC:go_curators
annotated source: regulation of biological process
annotated property: definition

response to stimulus
type: Class
subclass of: biological_process
definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
id: GO:0050896
has_alternative_id: GO:0051869
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
has_obo_namespace: biological_process
has_exact_synonym: physiological response to stimulus
in_subset: goslim pir
in_subset: gosubset prok
in_subset: qc do not manually annotate

Axiom
annotated target: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
database_cross_reference: GOC:ai
database_cross_reference: GOC:bf
annotated source: response to stimulus
annotated property: definition

localization
type: Class
subclass of: biological_process
definition: Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location.
id: GO:0051179
has_obo_namespace: biological_process
has_narrow_synonym: establishment and maintenance of cellular component location
has_exact_synonym: establishment and maintenance of localization
has_exact_synonym: establishment and maintenance of position
has_narrow_synonym: establishment and maintenance of substance location
has_narrow_synonym: establishment and maintenance of substrate location
has_exact_synonym: localisation
in_subset: goslim pir
in_subset: gosubset prok

Axiom
annotated target: Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location.
database_cross_reference: GOC:ai
annotated source: localization
annotated property: definition

Axiom
database_cross_reference: GOC:mah
annotated target: localisation
annotated source: localization
annotated property: has_exact_synonym

regulation of macromolecule metabolic process
type: Class
subclass of: regulation of metabolic process
subclass of: Restriction
  on property: regulates
  some values from: macromolecule metabolic process
definition: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
id: GO:0060255
has_obo_namespace: biological_process
in_subset: gosubset prok

Axiom
annotated target: Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated source: regulation of macromolecule metabolic process
annotated property: definition

biological regulation
type: Class
subclass of: biological_process
definition: Any process that modulates a measurable attribute of any biological process, quality or function.
id: GO:0065007
has_obo_namespace: biological_process
has_broad_synonym: regulation
in_subset: goslim pir
in_subset: gosubset prok

Axiom
annotated target: Any process that modulates a measurable attribute of any biological process, quality or function.
database_cross_reference: GOC:dph
database_cross_reference: GOC:isa_complete
database_cross_reference: GOC:mah
database_cross_reference: GOC:pr
database_cross_reference: GOC:vw
annotated source: biological regulation
annotated property: definition

organic substance metabolic process
type: Class
subclass of: metabolic process
id: GO:0071704
definition: The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
has_obo_namespace: biological_process
has_exact_synonym: organic molecular entity metabolic process
has_exact_synonym: organic molecular entity metabolism
has_exact_synonym: organic substance metabolism

Axiom
database_cross_reference: CHEBI:50860
database_cross_reference: GOC:mah
annotated target: The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
annotated source: organic substance metabolic process
annotated property: definition

bacterial-type flagellum-dependent cell motility
type: Class
subclass of: archaeal or bacterial-type flagellum-dependent cell motility
definition: Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
id: GO:0071973
has_related_synonym: bacterial-type flagellar cell motility
has_obo_namespace: biological_process
has_exact_synonym: flagellin-based flagellar cell motility
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mah
annotated target: flagellin-based flagellar cell motility
annotated source: bacterial-type flagellum-dependent cell motility
annotated property: has_exact_synonym

Axiom
annotated target: Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
database_cross_reference: GOC:cilia
database_cross_reference: GOC:krc
database_cross_reference: GOC:mah
annotated source: bacterial-type flagellum-dependent cell motility
annotated property: definition

cell swimming
type: Class
subclass of: cell motility
definition: Cell motility that results in the smooth movement of a cell through a liquid medium.
id: GO:0071975
has_obo_namespace: biological_process
has_exact_synonym: cell swimming motility
in_subset: gosubset prok

Axiom
annotated target: Cell motility that results in the smooth movement of a cell through a liquid medium.
database_cross_reference: PMID:18461074
annotated source: cell swimming
annotated property: definition

Axiom
database_cross_reference: GOC:mah
annotated target: cell swimming motility
annotated source: cell swimming
annotated property: has_exact_synonym

cell gliding
type: Class
subclass of: cell motility
definition: Cell motility that results in the smooth movement of a cell along a solid surface.
id: GO:0071976
has_obo_namespace: biological_process
has_exact_synonym: cell gliding motility
in_subset: gosubset prok

Axiom
annotated target: Cell motility that results in the smooth movement of a cell along a solid surface.
database_cross_reference: PMID:18461074
annotated source: cell gliding
annotated property: definition

Axiom
database_cross_reference: GOC:mah
annotated target: cell gliding motility
annotated source: cell gliding
annotated property: has_exact_synonym

bacterial-type flagellum-dependent swarming motility
type: Class
subclass of: bacterial-type flagellum-dependent cell motility
definition: Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
id: GO:0071978
has_related_synonym: bacterial-type flagellar swarming motility
has_exact_synonym: bacterial-type flagellum-mediated cell swarming
has_obo_namespace: biological_process
in_subset: gosubset prok

Axiom
database_cross_reference: GOC:mah
annotated target: bacterial-type flagellum-mediated cell swarming
annotated source: bacterial-type flagellum-dependent swarming motility
annotated property: has_exact_synonym

Axiom
annotated target: Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
database_cross_reference: GOC:cilia
database_cross_reference: PMID:14527279
database_cross_reference: PMID:18461074
annotated source: bacterial-type flagellum-dependent swarming motility
annotated property: definition

nucleic acid metabolic process
type: Class
subclass of: nucleobase-containing compound metabolic process
subclass of: macromolecule metabolic process
definition: Any cellular metabolic process involving nucleic acids.
id: GO:0090304
has_obo_namespace: biological_process

Axiom
annotated target: Any cellular metabolic process involving nucleic acids.
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb
annotated source: nucleic acid metabolic process
annotated property: definition

archaeal or bacterial-type flagellum-dependent cell motility
type: Class
subclass of: cilium or flagellum-dependent cell motility
comment: Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. This term was added for mapping to the UniProt keyword "flagellar rotation". For manual annotation, please use one of the child terms of GO:0097588 that refer specifically to either archaeal- or bacterial-type flagella.
definition: Cell motility due to movement of bacterial- or archaeal-type flagella.
id: GO:0097588
has_obo_namespace: biological_process

Axiom
annotated target: Cell motility due to movement of bacterial- or archaeal-type flagella.
database_cross_reference: GOC:cilia
database_cross_reference: GOC:krc
annotated source: archaeal or bacterial-type flagellum-dependent cell motility
annotated property: definition

organic cyclic compound metabolic process
type: Class
subclass of: organic substance metabolic process
id: GO:1901360
definition: The chemical reactions and pathways involving organic cyclic compound.
has_obo_namespace: biological_process
has_exact_synonym: organic cyclic compound metabolism

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic cyclic compound metabolism
annotated source: organic cyclic compound metabolic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:TermGenie
annotated target: The chemical reactions and pathways involving organic cyclic compound.
annotated source: organic cyclic compound metabolic process
annotated property: definition

organic cyclic compound biosynthetic process
type: Class
subclass of: organic cyclic compound metabolic process
subclass of: organic substance biosynthetic process
id: GO:1901362
definition: The chemical reactions and pathways resulting in the formation of organic cyclic compound.
has_obo_namespace: biological_process
has_exact_synonym: organic cyclic compound anabolism
has_exact_synonym: organic cyclic compound biosynthesis
has_exact_synonym: organic cyclic compound formation
has_exact_synonym: organic cyclic compound synthesis

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic cyclic compound anabolism
annotated source: organic cyclic compound biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic cyclic compound formation
annotated source: organic cyclic compound biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic cyclic compound synthesis
annotated source: organic cyclic compound biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:TermGenie
annotated target: The chemical reactions and pathways resulting in the formation of organic cyclic compound.
annotated source: organic cyclic compound biosynthetic process
annotated property: definition

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic cyclic compound biosynthesis
annotated source: organic cyclic compound biosynthetic process
annotated property: has_exact_synonym

organic substance biosynthetic process
type: Class
subclass of: biosynthetic process
subclass of: organic substance metabolic process
id: GO:1901576
definition: The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon.
has_obo_namespace: biological_process
has_exact_synonym: organic molecular entity anabolism
has_exact_synonym: organic molecular entity biosynthesis
has_exact_synonym: organic molecular entity biosynthetic process
has_exact_synonym: organic molecular entity formation
has_exact_synonym: organic molecular entity synthesis
has_exact_synonym: organic substance anabolism
has_exact_synonym: organic substance biosynthesis
has_exact_synonym: organic substance formation
has_exact_synonym: organic substance synthesis

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic molecular entity biosynthesis
annotated source: organic substance biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic molecular entity anabolism
annotated source: organic substance biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:TermGenie
database_cross_reference: GOC:pr
annotated target: The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon.
annotated source: organic substance biosynthetic process
annotated property: definition

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic molecular entity synthesis
annotated source: organic substance biosynthetic process
annotated property: has_exact_synonym

Axiom
database_cross_reference: GOC:TermGenie
annotated target: organic molecular entity formation
annotated source: organic substance biosynthetic process
annotated property: has_exact_synonym

microbial phenotype
type: Class
creation date: 2011-03-10T04:01:50Z
id: OMP:0000000
definition: The observable manifestation of the genotype of a microbial cell or group of cells in an environment.
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: OMP:MCC
annotated target: The observable manifestation of the genotype of a microbial cell or group of cells in an environment.
annotated property: definition
annotated source: microbial phenotype

motility phenotype
type: Class
equivalent class: Class
  intersection of: locomotion phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: cell
subclass of: locomotion phenotype
subclass of: cellular component phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: cell
creation date: 2011-03-10T06:55:06Z
definition: A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
database_cross_reference: GO:0048870
id: OMP:0000001
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: motility phenotype

cell motility
type: Axiom
annotated target: GO:0048870
annotated source: motility phenotype
annotated property: database_cross_reference

decreased motility
type: Class
equivalent class: Class
  intersection of: altered motility
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered motility
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2011-03-10T07:02:42Z
definition: An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control.
id: OMP:0000002
database_cross_reference: PATO:0002297
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: decreased motility

cell arrangement phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-04-14T02:30:07Z
definition: A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another.
id: OMP:0000003
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cell arrangement phenotype

taxis phenotype
type: Class
equivalent class: Class
  intersection of: locomotion phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: taxis
subclass of: locomotion phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: taxis
creation date: 2011-04-14T03:29:20Z
definition: A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus.
id: OMP:0000004
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus.
database_cross_reference: ISBN:0192800329
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: taxis phenotype

presence of motility
type: Class
equivalent class: Class
  intersection of: motility phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000467
subclass of: motility phenotype
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000467
creation date: 2011-04-14T03:35:35Z
definition: A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another.
id: OMP:0000005
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: motile

Axiom
annotated target: A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of motility

presence of akinete formation
type: Class
equivalent class: Class
  intersection of: akinete formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000467
subclass of: akinete formation phenotype
subclass of: presence of asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000467
creation date: 2011-04-26T02:51:36Z
definition: An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete.
id: OMP:0000006
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of akinete formation

absence of akinete formation
type: Class
equivalent class: Class
  intersection of: akinete formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: akinete formation phenotype
subclass of: absence of asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2011-04-26T02:52:52Z
definition: An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete.
id: OMP:0000007
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of akinete formation

presence of budding
type: Class
subclass of: budding phenotype
creation date: 2011-04-26T02:58:46Z
definition: A budding phenotype where an organism reproduces by the process of budding.
id: OMP:0000008
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A budding phenotype where an organism reproduces by the process of budding.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of budding

decreased cell surface area-to-volume ratio
type: Class
subclass of: altered cell surface area-to-volume ratio
creation date: 2020-07-22T22:22:03Z
id: OMP:0000009
has_obo_namespace: microbial_phenotype
created by: siegele

presence of heterocysts
type: Class
subclass of: heterocyst formation phenotype
creation date: 2011-04-26T02:59:42Z
definition: A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst.
id: OMP:0000010
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of heterocysts

absence of heterocysts
type: Class
subclass of: heterocyst formation phenotype
creation date: 2011-04-26T02:59:42Z
definition: A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst.
id: OMP:0000011
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of heterocysts

abolished spore germination efficiency
type: Class
subclass of: decreased spore germination efficiency
creation date: 2011-04-26T03:01:38Z
definition: A decreased spore germination phenotype where no spores germinate.
id: OMP:0000012
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased spore germination phenotype where no spores germinate.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: abolished spore germination efficiency

decreased endospore formation
type: Class
equivalent class: Class
  intersection of: altered endospore formation
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered endospore formation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2011-06-07T10:14:15Z
definition: An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control.
id: OMP:0000013
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased endospore formation

increased endospore formation
type: Class
equivalent class: Class
  intersection of: altered endospore formation
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered endospore formation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2011-06-07T10:14:39Z
definition: An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control.
id: OMP:0000014
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased endospore formation

decreased heterocyst formation
type: Class
subclass of: altered heterocyst formation
creation date: 2011-04-26T03:05:35Z
definition: A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control.
id: OMP:0000015
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: decreased heterocyst formation

delayed spore germination
type: Class
subclass of: altered spore germination
creation date: 2011-04-26T03:07:11Z
definition: A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period.
id: OMP:0000016
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: delayed spore germination

presence of endospore formation
type: Class
equivalent class: Class
  intersection of: endospore formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000467
subclass of: endospore formation phenotype
subclass of: presence of asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000467
creation date: 2011-04-26T03:09:10Z
definition: An endospore formation phenotype where the cell possesses the ability to form an endospore.
id: OMP:0000017
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore formation phenotype where the cell possesses the ability to form an endospore.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of endospore formation

absence of endospore formation
type: Class
equivalent class: Class
  intersection of: endospore formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: endospore formation phenotype
subclass of: absence of asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2011-04-26T03:09:25Z
definition: An endospore formation phenotype where the cell does not possess the ability to form an endospore.
id: OMP:0000018
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore formation phenotype where the cell does not possess the ability to form an endospore.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of endospore formation

increased cell surface area-to-volume ratio
type: Class
subclass of: altered cell surface area-to-volume ratio
creation date: 2020-07-22T22:22:03Z
id: OMP:0000019
has_obo_namespace: microbial_phenotype
created by: siegele

presence of myxospore formation
type: Class
equivalent class: Class
  intersection of: myxospore formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000467
subclass of: myxospore formation phenotype
subclass of: presence of asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000467
creation date: 2011-04-26T03:10:51Z
definition: A myxospore formation phenotype where an organism possesses the ability to form myxospores.
id: OMP:0000020
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A myxospore formation phenotype where an organism possesses the ability to form myxospores.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of myxospore formation

absence of myxospore formation
type: Class
equivalent class: Class
  intersection of: myxospore formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: myxospore formation phenotype
subclass of: absence of asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2011-04-26T03:10:51Z
definition: A myxospore formation phenotype where an organism does not possess the ability to form myxospores.
id: OMP:0000021
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A myxospore formation phenotype where an organism does not possess the ability to form myxospores.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of myxospore formation

decreased myxospore formation
type: Class
equivalent class: Class
  intersection of: altered myxospore formation
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered myxospore formation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2011-04-26T03:10:51Z
definition: An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control.
id: OMP:0000022
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: decreased myxospore formation

periplasmic flagellum/flagella
type: Class
subclass of: flagellum arrangement phenotype
creation date: 2011-06-07T11:12:48Z
definition: A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.
id: OMP:0000023
has_related_synonym: axial fibril
has_narrow_synonym: axial filament
has_related_synonym: endoflagella
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: periplasmic flagellum/flagella

altered flagellum length
type: Class
subclass of: altered flagellum
creation date: 2011-06-07T11:19:56Z
definition: An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control.
id: OMP:0000024
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: altered flagellum length

altered cell surface area-to-volume ratio variability
type: Class
subclass of: altered cell size variability within a cell population
subclass of: altered cell surface area-to-volume ratio
creation date: 2020-07-22T22:23:15Z
id: OMP:0000025
has_obo_namespace: microbial_phenotype
created by: siegele

host-virus interaction phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-06-06T02:39:55Z
definition: A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus.
id: OMP:0000026
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: host-bacteriophage interaction phenotype
has_narrow_synonym: host-phage interaction phenotype
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: host-virus interaction phenotype

flagellum morphology phenotype
type: Class
subclass of: cell projection morphology phenotype
creation date: 2011-04-26T03:26:26Z
definition: A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell.
id: OMP:0000027
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: axial filament phenotype
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: flagellum morphology phenotype

decreased number of pili
type: Class
subclass of: altered pilus phenotype
creation date: 2011-04-26T03:29:28Z
definition: A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control.
id: OMP:0000028
has_exact_synonym: decreased fimbriae formation
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of pilus phenotype where a microorganism has fewer pili per cell relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: decreased number of pili

presence of flagellum
type: Class
subclass of: flagellum morphology phenotype
creation date: 2011-04-26T03:29:34Z
definition: A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments.
id: OMP:0000029
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of flagellum

absence of flagellum
type: Class
subclass of: flagellum morphology phenotype
creation date: 2011-04-26T03:29:50Z
definition: A flagellum phenotype where the organism does not possess a flagellum or flagella.
id: OMP:0000030
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: non-flagellated phenotype

Axiom
annotated target: A flagellum phenotype where the organism does not possess a flagellum or flagella.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of flagellum

altered flagellum shape
type: Class
subclass of: altered flagellum
creation date: 2011-04-26T03:41:37Z
definition: An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control.
id: OMP:0000031
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: altered flagellum shape

decreased cell surface area-to-volume ratio variability
type: Class
subclass of: altered cell surface area-to-volume ratio variability
creation date: 2020-07-22T22:24:44Z
id: OMP:0000032
has_obo_namespace: microbial_phenotype
created by: siegele

absence of pilus
type: Class
subclass of: pilus morphology phenotype
creation date: 2011-04-26T03:44:01Z
definition: A pilus phenotype where an organism does not possess a pilus.
id: OMP:0000033
has_exact_synonym: fimbria absent
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pilus phenotype where an organism does not possess a pilus.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of pilus

presence of pilus
type: Class
subclass of: pilus morphology phenotype
creation date: 2011-04-26T03:44:22Z
definition: A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions.
comment: Fimbria (plural, fimbriae) is a common synonym for pilus (plural, pili).
id: OMP:0000034
has_exact_synonym: fimbria present
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pilus phenotype where a microorganism produces a pilus or pili in one or more growth conditions.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of pilus

malformed pilus
type: Class
subclass of: altered pilus phenotype
creation date: 2011-04-26T03:44:34Z
definition: A pilus phenotype where the cell possesses a pilus that was distorted during formation.
id: OMP:0000035
has_exact_synonym: malformed fimbrium
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pilus phenotype where the cell possesses a pilus that was distorted during formation.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: malformed pilus

increased amount of capsule
type: Class
subclass of: altered capsule phenotype
creation date: 2011-06-07T10:53:11Z
definition: An altered capsule phenotype where the amount of capsule is increased relative to a designated control.
id: OMP:0000036
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered capsule phenotype where the amount of capsule is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased amount of capsule

increased flagellum length
type: Class
subclass of: altered flagellum length
creation date: 2011-06-07T11:25:05Z
definition: An altered flagellum length phenotype where the length of the flagellum is longer than a designated control.
id: OMP:0000037
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered flagellum length phenotype where the length of the flagellum is longer than a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: increased flagellum length

increased cell surface area-to-volume ratio variability
type: Class
subclass of: altered cell surface area-to-volume ratio variability
creation date: 2020-07-22T22:24:44Z
id: OMP:0000038
has_obo_namespace: microbial_phenotype
created by: siegele

O2 effects on population growth phenotype
type: Class
subclass of: effect of non-nutrient environmental factors on population growth phenotype
creation date: 2011-06-06T03:36:04Z
definition: A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment.
id: OMP:0000039
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth range phenotype related to how growth of a microbial population is affected by different concentrations of oxygen gas (O2) in the environment.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: O2 effects on population growth phenotype

decreased cell size
type: Class
subclass of: altered cell size
creation date: 2011-04-26T03:47:26Z
definition: An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control.
id: OMP:0000040
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: decreased cell size

increased cell size
type: Class
subclass of: altered cell size
creation date: 2011-04-26T03:49:09Z
definition: An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control.
id: OMP:0000041
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: increased cell size

anucleoid
type: Class
subclass of: nucleoid phenotype
creation date: 2011-04-26T03:51:47Z
definition: A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population.
id: OMP:0000042
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: anucleoid

nucleoid number phenotype
type: Class
subclass of: nucleoid phenotype
creation date: 2011-04-26T03:53:34Z
definition: A nucleoid phenotype dealing with the number of nucleoid regions in the cell.
id: OMP:0000043
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid phenotype dealing with the number of nucleoid regions in the cell.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: nucleoid number phenotype

altered cell circularity
type: Class
subclass of: cell circularity phenotype
subclass of: altered cell shape
creation date: 2020-07-22T22:30:41Z
definition: Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2).
id: OMP:0000044
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2).
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell circularity

increased motility
type: Class
equivalent class: Class
  intersection of: altered motility
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered motility
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2011-04-26T04:08:26Z
definition: An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control.
id: OMP:0000045
database_cross_reference: PATO:0002298
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: increased motility

presence of chemotaxis
type: Class
subclass of: chemotaxis phenotype
creation date: 2011-04-26T04:17:42Z
definition: A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient.
id: OMP:0000046
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of chemotaxis

aerotaxis phenotype
type: Class
equivalent class: Class
  intersection of: taxis phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: aerotaxis
subclass of: taxis phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: aerotaxis
creation date: 2011-04-26T04:18:11Z
definition: A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2).
database_cross_reference: GO:0009454
id: OMP:0000047
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2).
database_cross_reference: ISBN:0192800329
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: aerotaxis phenotype

aerotaxis
type: Axiom
annotated target: GO:0009454
annotated source: aerotaxis phenotype
annotated property: database_cross_reference

chemotaxis phenotype
type: Class
subclass of: taxis phenotype
creation date: 2011-04-26T04:27:11Z
definition: A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient.
database_cross_reference: GO:0006935
id: OMP:0000048
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. ChEBI cross product candidate (and child terms).
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient.
database_cross_reference: ISBN:0198506732
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: chemotaxis phenotype

presence of aerotaxis
type: Class
equivalent class: Class
  intersection of: aerotaxis phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000467
subclass of: aerotaxis phenotype
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000467
creation date: 2011-04-26T04:27:42Z
definition: An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2).
id: OMP:0000049
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of aerotaxis

decreased amount of capsule
type: Class
subclass of: altered capsule phenotype
creation date: 2011-06-07T10:53:59Z
definition: An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control.
id: OMP:0000050
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased amount of capsule

decreased cell circularity
type: Class
subclass of: altered cell circularity
creation date: 2020-07-22T22:32:02Z
id: OMP:0000051
has_obo_namespace: microbial_phenotype
created by: siegele

presence of positive chemotaxis
type: Class
subclass of: presence of chemotaxis
creation date: 2011-04-26T04:42:14Z
definition: A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical.
id: OMP:0000052
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of positive chemotaxis

presence of negative chemotaxis
type: Class
subclass of: presence of chemotaxis
creation date: 2011-04-26T04:42:14Z
definition: A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical).
id: OMP:0000053
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: repellent

Axiom
annotated target: A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of negative chemotaxis

absence of positive chemotaxis
type: Class
subclass of: absence of chemotaxis
creation date: 2011-04-26T04:42:14Z
definition: An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical.
id: OMP:0000054
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of positive chemotaxis

absence of negative chemotaxis
type: Class
subclass of: absence of chemotaxis
creation date: 2011-04-26T04:42:14Z
definition: An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical.
id: OMP:0000055
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of negative chemotaxis

presence of positive aerotaxis
type: Class
subclass of: presence of aerotaxis
creation date: 2011-04-26T04:44:17Z
definition: A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen.
database_cross_reference: GO:0052131
id: OMP:0000056
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of positive aerotaxis

presence of negative aerotaxis
type: Class
subclass of: presence of aerotaxis
creation date: 2011-04-26T04:44:17Z
definition: A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen.
database_cross_reference: GO:0052130
id: OMP:0000057
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of negative aerotaxis

absence of positive aerotaxis
type: Class
subclass of: absence of aerotaxis
creation date: 2011-04-26T04:44:17Z
definition: An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2).
id: OMP:0000058
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of positive aerotaxis

absence of negative aerotaxis
type: Class
subclass of: absence of aerotaxis
creation date: 2011-04-26T04:44:17Z
definition: An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2).
id: OMP:0000059
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of negative aerotaxis

presence of quorum sensing
type: Class
subclass of: quorum sensing phenotype
creation date: 2011-04-26T05:02:51Z
definition: A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
id: OMP:0000060
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of quorum sensing

decreased virulence
type: Class
subclass of: altered virulence
creation date: 2011-04-26T05:02:57Z
definition: An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control.
id: OMP:0000061
database_cross_reference: PATO:0002147
has_exact_synonym: less virulent
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: decreased virulence

increased virulence
type: Class
subclass of: altered virulence
creation date: 2011-04-26T05:03:12Z
definition: An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control.
id: OMP:0000062
database_cross_reference: PATO:0002148
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: more virulent

Axiom
annotated target: An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: increased virulence

absence of quorum sensing
type: Class
subclass of: quorum sensing phenotype
creation date: 2011-04-26T05:06:00Z
definition: A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
id: OMP:0000063
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of quorum sensing

increased cell circularity
type: Class
subclass of: altered cell circularity
creation date: 2020-07-22T22:32:02Z
id: OMP:0000064
has_obo_namespace: microbial_phenotype
created by: siegele

absence of virulence
type: Class
subclass of: virulence phenotype
creation date: 2011-04-26T05:06:35Z
definition: A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host).
id: OMP:0000065
has_exact_synonym: avirulence
has_exact_synonym: incompatible interaction
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of virulence

abolished virulence
type: Class
subclass of: decreased virulence
subclass of: absence of virulence
creation date: 2011-04-26T05:09:24Z
definition: A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished.
id: OMP:0000066
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: abolished virulence

presence of motility by swarming
type: Class
equivalent class: Class
  intersection of: presence of motility
  intersection of: Restriction
    on property: inheres_in
    some values from: bacterial-type flagellum-dependent swarming motility
subclass of: presence of motility
subclass of: Restriction
  on property: inheres_in
  some values from: bacterial-type flagellum-dependent swarming motility
creation date: 2011-02-02T03:28:43Z
definition: A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces.
id: OMP:0000067
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of motility by swarming

virulence phenotype
type: Class
subclass of: microbe-host interaction phenotype
creation date: 2011-02-02T03:28:59Z
definition: A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host).
database_cross_reference: APO:0000048
database_cross_reference: GO:0009405
id: OMP:0000068
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_broad_synonym: infectious agent
has_obo_namespace: microbial_phenotype
has_broad_synonym: pathogen
in_subset: qc do not manually annotate

pathogenesis
type: Axiom
annotated target: GO:0009405
annotated source: virulence phenotype
annotated property: database_cross_reference

virulence
type: Axiom
annotated target: APO:0000048
annotated source: virulence phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: virulence phenotype

quorum sensing phenotype
type: Class
subclass of: microbial communication phenotype
creation date: 2011-02-07T03:47:50Z
definition: A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves.
database_cross_reference: GO:0009372
id: OMP:0000069
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

quorum sensing
type: Axiom
annotated target: GO:0009372
annotated source: quorum sensing phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves.
database_cross_reference: GO:0009372
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: quorum sensing phenotype

cell development phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: cellular developmental process
subclass of: cellular process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: cellular developmental process
creation date: 2011-02-02T03:11:48Z
definition: A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition.
database_cross_reference: GO:0048869
id: OMP:0000070
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

cellular developmental process
type: Axiom
annotated target: GO:0048869
annotated source: cell development phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cell development phenotype

cell morphology phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: cell
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000051
subclass of: cellular component phenotype
subclass of: cellular physical quality phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: cell
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000051
creation date: 2011-02-02T03:15:16Z
definition: A microbial phenotype related to the form and structure of a microbial cell.
database_cross_reference: APO:0000050
id: OMP:0000071
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

cellular morphology
type: Axiom
annotated target: APO:0000050
annotated source: cell morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbial phenotype related to the form and structure of a microbial cell.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cell morphology phenotype

filamentous
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-02T03:31:35Z
definition: A cell arrangement phenotype where cells are joined end-to-end in linear chains.
id: OMP:0000072
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where cells are joined end-to-end in linear chains.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: filamentous

cell shape phenotype
type: Class
equivalent class: Class
  intersection of: cell morphology phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000052
subclass of: cell morphology phenotype
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000052
creation date: 2011-02-02T03:18:02Z
definition: A cell morphology phenotype where the trait in question is the shape of a cell.
database_cross_reference: APO:0000051
id: OMP:0000073
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

cell shape
type: Axiom
annotated target: APO:0000051
annotated source: cell shape phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell morphology phenotype where the trait in question is the shape of a cell.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cell shape phenotype

cell size phenotype
type: Class
equivalent class: Class
  intersection of: cell morphology phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000117
subclass of: cell morphology phenotype
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000117
creation date: 2011-02-02T03:18:19Z
definition: A cell morphology phenotype where the trait in question is the size of a cell.
database_cross_reference: APO:0000052
id: OMP:0000074
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell morphology phenotype where the trait in question is the size of a cell.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cell size phenotype

cell size
type: Axiom
annotated target: APO:0000052
annotated source: cell size phenotype
annotated property: database_cross_reference

coccus
type: Class
subclass of: spheroid cell shape
creation date: 2011-02-02T03:18:29Z
definition: A spheroid cell phenotype where a cell is spherical or nearly spherical.
id: OMP:0000075
created by: adrienne
has_obo_namespace: microbial_phenotype
has_exact_synonym: spherical-shaped

Axiom
annotated target: A spheroid cell phenotype where a cell is spherical or nearly spherical.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: coccus

rod-shaped cells
type: Class
subclass of: cylindrical cell shape
creation date: 2011-02-02T03:18:47Z
definition: A cylindrical cell phenotype where an organism has rod-shaped cells.
id: OMP:0000076
created by: adrienne
has_exact_synonym: bacillus
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cylindrical cell phenotype where an organism has rod-shaped cells.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: rod-shaped cells

vibrio
type: Class
subclass of: spiral cell shape
creation date: 2011-02-02T03:19:31Z
definition: A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral.
id: OMP:0000077
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: vibrio

flagellum arrangement phenotype
type: Class
subclass of: flagellum morphology phenotype
creation date: 2011-02-02T03:43:16Z
definition: A flagellum phenotype where the trait in question is the location of the flagellum on an organism.
id: OMP:0000078
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flagellum phenotype where the trait in question is the location of the flagellum on an organism.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: flagellum arrangement phenotype

monotrichous
type: Class
subclass of: flagellum arrangement phenotype
creation date: 2011-02-02T03:44:18Z
definition: A flagellum distribution phenotype where an organism has a single flagellum.
id: OMP:0000079
created by: adrienne
has_obo_namespace: microbial_phenotype
has_exact_synonym: single flagellum

Axiom
annotated target: A flagellum distribution phenotype where an organism has a single flagellum.
database_cross_reference: ISBN:9780073402406
annotated property: definition
annotated source: monotrichous

amphitrichous
type: Class
subclass of: flagellum arrangement phenotype
creation date: 2011-02-02T03:45:34Z
definition: A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell.
id: OMP:0000080
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: amphitrichous

lophotrichous
type: Class
subclass of: flagellum arrangement phenotype
creation date: 2011-02-02T03:46:16Z
definition: A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell.
id: OMP:0000081
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell.
database_cross_reference: ISBN:9780073402406
annotated property: definition
annotated source: lophotrichous

peritrichous flagella
type: Class
subclass of: flagellum arrangement phenotype
creation date: 2011-02-02T03:46:44Z
definition: A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface.
id: OMP:0000082
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: peritrichous flagella

cell projection morphology phenotype
type: Class
equivalent class: Class
  intersection of: cell morphology phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: cell projection
subclass of: cell morphology phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: cell projection
creation date: 2011-02-02T03:47:44Z
definition: A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell.
database_cross_reference: GO:0042995
id: OMP:0000083
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_exact_synonym: cell appendage phenotype
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell.
database_cross_reference: GO:0042995
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cell projection morphology phenotype

cell projection
type: Axiom
annotated target: GO:0042995
annotated source: cell projection morphology phenotype
annotated property: database_cross_reference

pilus morphology phenotype
type: Class
subclass of: cell projection morphology phenotype
creation date: 2011-02-02T03:47:57Z
definition: A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell.
id: OMP:0000084
created by: adrienne
has_exact_synonym: fimbria phenotype
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: GO:0009289
annotated target: fimbria phenotype
annotated source: pilus morphology phenotype
annotated property: has_exact_synonym

Axiom
annotated target: A cell projection phenotype morphology where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: pilus morphology phenotype

cell envelope morphology phenotype
type: Class
equivalent class: Class
  intersection of: cell morphology phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: envelope
subclass of: cell morphology phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: envelope
creation date: 2011-02-02T03:49:03Z
definition: A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope.
id: OMP:0000085
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cell envelope morphology phenotype

spiral cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2011-02-02T03:19:47Z
definition: A cell shape phenotype where a cell is helical or cork-screw shaped.
id: OMP:0000086
created by: adrienne
has_related_synonym: curved rod
has_obo_namespace: microbial_phenotype
has_narrow_synonym: spirillum
has_narrow_synonym: spirochete
has_narrow_synonym: vibrio

Axiom
annotated target: A cell shape phenotype where a cell is helical or cork-screw shaped.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: spiral cell shape

facultative anaerobe
type: Class
subclass of: commonly used descriptors
creation date: 2011-06-06T03:42:26Z
definition: A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present.
id: OMP:0000087
has_exact_synonym: facultative aerobe
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: ISBN:978-0134261928
annotated target: facultative aerobe
annotated source: facultative anaerobe
annotated property: has_exact_synonym

Axiom
annotated target: A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth but will utilize O2 in metabolic reactions when it is present.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: facultative anaerobe

filamentous colony
type: Class
subclass of: colony form phenotype
creation date: 2011-06-07T12:08:48Z
definition: A colony form phenotype characterized by growth of thin individual projections in the colony.
id: OMP:0000088
database_cross_reference: SNOMEDCT:31153000
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype characterized by growth of thin individual projections in the colony.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: filamentous colony

budding phenotype
type: Class
subclass of: asexual reproduction phenotype
creation date: 2011-02-02T03:23:41Z
definition: An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism.
database_cross_reference: GO:0007114
id: OMP:0000089
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: budding phenotype

cell budding
type: Axiom
annotated target: GO:0007114
annotated source: budding phenotype
annotated property: database_cross_reference

lifespan phenotype
type: Class
subclass of: growth phenotype
creation date: 2011-02-02T03:24:11Z
definition: An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells.
id: OMP:0000090
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: lifespan phenotype

sporulation phenotype
type: Class
equivalent class: Class
  intersection of: cell development phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: sporulation
subclass of: cell development phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: sporulation
creation date: 2011-02-02T03:24:24Z
definition: A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction.
database_cross_reference: GO:0043934
id: OMP:0000091
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

sporulation
type: Axiom
annotated target: GO:0043934
annotated source: sporulation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: sporulation phenotype

heterocyst formation phenotype
type: Class
equivalent class: Class
  intersection of: cell development phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: heterocyst differentiation
subclass of: cell development phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: heterocyst differentiation
creation date: 2011-02-02T03:24:43Z
definition: A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
database_cross_reference: GO:0043158
id: OMP:0000092
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen.
database_cross_reference: DOI:10.1046/j.1469-8137.1999.00505.x
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: heterocyst formation phenotype

heterocyst differentiation
type: Axiom
annotated target: GO:0043158
annotated source: heterocyst formation phenotype
annotated property: database_cross_reference

akinete formation phenotype
type: Class
subclass of: asexual sporulation phenotype
creation date: 2011-02-02T03:25:02Z
definition: A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell.
database_cross_reference: GO:0034302
id: OMP:0000093
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes typically are more resistant to dessication and other environmental stresses than vegetative cells.
created by: adrienne
has_obo_namespace: microbial_phenotype

akinete formation
type: Axiom
annotated target: GO:0034302
annotated source: akinete formation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell.
database_cross_reference: OMP:MCC
database_cross_reference: doi:10.1046/j.1469-8137.1999.00505.x
annotated property: definition
annotated source: akinete formation phenotype

endospore formation phenotype
type: Class
equivalent class: Class
  intersection of: sporulation phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: endospore formation
subclass of: asexual sporulation phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: endospore formation
creation date: 2011-02-02T03:25:29Z
definition: A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell.
database_cross_reference: FAO:0000019
database_cross_reference: GO:0034301
id: OMP:0000094
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

spore
type: Axiom
annotated target: FAO:0000019
annotated source: endospore formation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: endospore formation phenotype

endospore formation
type: Axiom
annotated target: GO:0034301
annotated source: endospore formation phenotype
annotated property: database_cross_reference

spore germination phenotype
type: Class
equivalent class: Class
  intersection of: cell development phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: spore germination
subclass of: cell development phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: spore germination
creation date: 2011-02-02T03:25:47Z
definition: A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
database_cross_reference: GO:0009847
id: OMP:0000095
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

spore germination
type: Axiom
annotated target: GO:0009847
annotated source: spore germination phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: spore germination phenotype

myxospore formation phenotype
type: Class
equivalent class: Class
  intersection of: sporulation phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: myxospore formation
subclass of: asexual sporulation phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: myxospore formation
creation date: 2011-02-02T03:26:41Z
definition: A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria.
database_cross_reference: GO:0034303
id: OMP:0000096
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: myxospore formation phenotype

myxospore formation
type: Axiom
annotated target: GO:0034303
annotated source: myxospore formation phenotype
annotated property: database_cross_reference

absence of chemotaxis
type: Class
subclass of: chemotaxis phenotype
creation date: 2011-02-02T03:28:13Z
definition: A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient.
id: OMP:0000097
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of chemotaxis

altered virulence
type: Class
subclass of: virulence phenotype
creation date: 2011-04-28T02:11:35Z
definition: A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control.
id: OMP:0000098
database_cross_reference: PATO:0002146
has_exact_synonym: compatible interaction
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_exact_synonym: virulence

Axiom
annotated target: A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: altered virulence

hemolysis test
type: Class
subclass of: differential test phenotype
creation date: 2011-06-07T03:17:22Z
definition: A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells.
id: OMP:0000099
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: hemolysis test

colony morphology phenotype
type: Class
subclass of: population morphology phenotype
creation date: 2011-02-02T02:14:39Z
definition: A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium.
database_cross_reference: APO:0000060
created by: Adrienne
id: OMP:0000100
has_related_synonym: colony appearance phenotype
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium.
database_cross_reference: ISBN:9780073302089
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony morphology phenotype

colony appearance
type: Axiom
annotated target: APO:0000060
annotated source: colony morphology phenotype
annotated property: database_cross_reference

microbial communication phenotype
type: Class
subclass of: multi-organism process phenotype
creation date: 2011-02-07T03:45:44Z
definition: A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated.
created by: Adrienne
id: OMP:0000101
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: microbial communication phenotype

colony opacity phenotype
type: Class
subclass of: colony optical phenotype
creation date: 2011-06-07T12:18:14Z
definition: A colony morphology phenotype dealing with the degree to which light can pass through a colony.
id: OMP:0000102
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype dealing with the degree to which light can pass through a colony.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony opacity phenotype

colony form phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-02-02T02:41:50Z
definition: A colony morphology phenotype dealing with the basic shape or form of a colony or colonies.
created by: Adrienne
id: OMP:0000103
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype dealing with the basic shape or form of a colony or colonies.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony form phenotype

colony elevation phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-02-02T02:42:12Z
definition: A colony morphology phenotype dealing with the height or vertical growth of the colony.
created by: Adrienne
id: OMP:0000104
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype dealing with the height or vertical growth of the colony.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony elevation phenotype

aerotolerant anaerobe
type: Class
subclass of: commonly used descriptors
creation date: 2011-06-06T03:43:38Z
definition: A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present.
id: OMP:0000105
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A microbial phenotype that describes a microorganism that does not require oxygen gas (O2) for growth and doesn't utilize O2 even when it is present.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: aerotolerant anaerobe

colony sheen phenotype
type: Class
subclass of: colony surface phenotype
creation date: 2011-02-02T02:42:37Z
definition: A colony surface phenotype characterized by a soft luster on the surface.
created by: Adrienne
id: OMP:0000106
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony surface phenotype characterized by a soft luster on the surface.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: colony sheen phenotype

colony pigmentation phenotype
type: Class
subclass of: colony optical phenotype
creation date: 2011-02-02T02:43:25Z
definition: A colony morphology phenotype related to the color of a colony or colonies.
created by: Adrienne
id: OMP:0000107
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype related to the color of a colony or colonies.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony pigmentation phenotype

colony optical phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-02-02T02:43:46Z
definition: A colony morphology phenotype dealing with the interaction of a colony or colonies and light.
created by: Adrienne
id: OMP:0000108
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype dealing with the interaction of a colony or colonies and light.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: colony optical phenotype

presence of mucoid colonies
type: Class
subclass of: mucoid colony surface phenotype
creation date: 2011-02-07T03:38:08Z
definition: A mucoid colony phenotype where the colonies are mucoid.
created by: Adrienne
id: OMP:0000109
has_obo_namespace: microbial_phenotype
has_related_synonym: viscous colony texture

Axiom
annotated target: A mucoid colony phenotype where the colonies are mucoid.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of mucoid colonies

Axiom
database_cross_reference: OMP:WAM
annotated target: viscous colony texture
annotated source: presence of mucoid colonies
annotated property: has_related_synonym

opaque colony
type: Class
subclass of: colony opacity phenotype
creation date: 2011-02-02T02:45:02Z
definition: A colony opacity phenotype characterized by inability of light to pass through it.
created by: Adrienne
id: OMP:0000110
database_cross_reference: SNOMED:P3-51350
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony opacity phenotype characterized by inability of light to pass through it.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: opaque colony

presence of motility by swimming
type: Class
equivalent class: Class
  intersection of: presence of motility
  intersection of: Restriction
    on property: inheres_in
    some values from: cell swimming
subclass of: presence of motility
subclass of: Restriction
  on property: inheres_in
  some values from: cell swimming
creation date: 2011-02-07T03:17:40Z
definition: A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium.
comment: In Bacteria and Archaea, motility by swimming is typically powered by a flagellum or flagella. In Protists, swimming motility is typically powered by cilia or flagella.
id: OMP:0000111
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of motility phenotype where a microbe exhibits smooth movement through a liquid medium.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of motility by swimming

presence of motility by gliding
type: Class
equivalent class: Class
  intersection of: presence of motility
  intersection of: Restriction
    on property: inheres_in
    some values from: cell gliding
subclass of: presence of motility
subclass of: Restriction
  on property: inheres_in
  some values from: cell gliding
creation date: 2011-02-07T03:18:03Z
definition: A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface.
id: OMP:0000112
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: presence of motility by gliding

presence of motility by twitching
type: Class
equivalent class: Class
  intersection of: presence of motility
  intersection of: Restriction
    on property: inheres_in
    some values from: type IV pilus-dependent motility
subclass of: presence of motility
subclass of: Restriction
  on property: inheres_in
  some values from: type IV pilus-dependent motility
creation date: 2011-02-07T03:18:13Z
definition: A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili.
database_cross_reference: GO:0043107
id: OMP:0000113
comment: Twitching motility of bacteria typically involves type IV pili.
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili.
database_cross_reference: OMP:MCC
database_cross_reference: PMID:12142488
annotated property: definition
annotated source: presence of motility by twitching

type IV pilus-dependent motility
type: Axiom
annotated target: GO:0043107
annotated source: presence of motility by twitching
annotated property: database_cross_reference

translucent colony
type: Class
subclass of: colony opacity phenotype
creation date: 2011-02-02T02:45:20Z
definition: A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance.
created by: Adrienne
id: OMP:0000114
database_cross_reference: SNOMED:P3-51370
has_obo_namespace: microbial_phenotype
has_exact_synonym: semi-translucent

Axiom
annotated target: A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: translucent colony

transparent colony
type: Class
subclass of: colony opacity phenotype
creation date: 2011-02-02T02:45:41Z
definition: A colony opacity phenotype characterized by a clear appearance.
created by: Adrienne
id: OMP:0000115
database_cross_reference: SNOMED:P3-51360
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony opacity phenotype characterized by a clear appearance.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: transparent colony

pigmented colony
type: Class
subclass of: colony pigmentation phenotype
creation date: 2011-02-02T02:46:17Z
definition: A colony pigmentation phenotype where colonies are pigmented.
created by: Adrienne
id: OMP:0000116
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony pigmentation phenotype where colonies are pigmented.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: pigmented colony

diplococcus
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:29:12Z
definition: A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane.
id: OMP:0000117
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: diplococcus

streptococcus
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:31:37Z
definition: A cell arrangement phenotype where chains of coccus cells arise from division events in one plane.
id: OMP:0000118
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where chains of coccus cells arise from division events in one plane.
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: streptococcus

tetrad
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:33:22Z
definition: A cell arrangement phenotype where squares of four coccus cells arise from division in two planes.
id: OMP:0000119
created by: adrienne
has_obo_namespace: microbial_phenotype
has_exact_synonym: micrococcus arrangement

Axiom
annotated target: A cell arrangement phenotype where squares of four coccus cells arise from division in two planes.
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: tetrad

sarcina
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:34:40Z
definition: A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes.
id: OMP:0000120
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes.
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: sarcina

staphylococcus
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:39:34Z
definition: A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes.
id: OMP:0000121
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes.
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: staphylococcus

streptobacillus
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:47:10Z
definition: A cell arrangement phenotype where bacillis cells are arranged in chains.
id: OMP:0000122
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where bacillis cells are arranged in chains.
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: streptobacillus

coccobacillus cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2011-02-18T02:48:21Z
definition: A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod).
id: OMP:0000123
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod).
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: coccobacillus cell shape

spirillum
type: Class
subclass of: spiral cell shape
creation date: 2011-02-18T02:51:54Z
definition: A spiral cell shape phenotype where a cell forms a rigid spiral.
id: OMP:0000124
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A spiral cell shape phenotype where a cell forms a rigid spiral.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: spirillum

spirochete
type: Class
subclass of: spiral cell shape
creation date: 2011-02-18T02:52:33Z
definition: A spiral cell shape phenotype where a cell forms a flexible spiral.
id: OMP:0000125
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A spiral cell shape phenotype where a cell forms a flexible spiral.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:AEZ
annotated property: definition
annotated source: spirochete

trichome-forming
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:55:59Z
definition: A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width.
id: OMP:0000126
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:5318446
annotated property: definition
annotated source: trichome-forming

sheathed
type: Class
subclass of: cell arrangement phenotype
creation date: 2011-02-18T02:59:18Z
definition: A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath.
id: OMP:0000127
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: sheathed

stalked cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2011-02-18T02:59:38Z
definition: A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol.
id: OMP:0000128
created by: adrienne
has_obo_namespace: microbial_phenotype
has_exact_synonym: prosthecate bacterium

Axiom
database_cross_reference: URL:http://en.wikipedia.org/wiki/Prosthecate_bacteria
annotated target: prosthecate bacterium
annotated source: stalked cell shape
annotated property: has_exact_synonym

Axiom
annotated target: A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol.
database_cross_reference: OMP:MCC
database_cross_reference: PMID:14245437
annotated property: definition
annotated source: stalked cell shape

cuboidal cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2011-02-18T02:59:57Z
definition: A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell.
id: OMP:0000129
created by: adrienne
has_obo_namespace: microbial_phenotype
has_related_synonym: square

Axiom
annotated target: A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: cuboidal cell shape

star-shaped cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2011-02-18T03:00:30Z
definition: A cell shape phenotype where a cell has projections that form points.
id: OMP:0000130
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell shape phenotype where a cell has projections that form points.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: star-shaped cell shape

lobed cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2011-02-18T03:00:58Z
definition: A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes).
id: OMP:0000131
database_cross_reference: PATO:0001979
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: lobed cell shape

lobed
type: Axiom
annotated target: PATO:0001979
annotated source: lobed cell shape
annotated property: database_cross_reference

pleomorphic cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2011-02-18T03:01:18Z
definition: A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form.
id: OMP:0000132
database_cross_reference: PATO:0001356
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: pleomorphic cell shape

absence of motility
type: Class
equivalent class: Class
  intersection of: motility phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: motility phenotype
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2011-02-18T03:33:32Z
definition: A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another.
id: OMP:0000133
created by: adrienne
has_obo_namespace: microbial_phenotype
has_related_synonym: non-motile

Axiom
annotated target: A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of motility

spherical akinete
type: Class
subclass of: akinete morphology phenotype
creation date: 2011-02-18T03:40:27Z
definition: An akinete morphology phenotype where the organism forms a spherical akinete.
id: OMP:0000134
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An akinete morphology phenotype where the organism forms a spherical akinete.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: spherical akinete

akinete envelope attribute
type: Class
subclass of: akinete morphology phenotype
creation date: 2011-02-18T03:41:16Z
definition: An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane.
id: OMP:0000135
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: akinete envelope attribute

in vitro nucleoid shape
type: Class
subclass of: nucleoid phenotype
creation date: 2011-02-21T04:16:30Z
definition: A nucleoid phenotype dealing with shape of the nucleoid region.
id: OMP:0000136
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid phenotype dealing with shape of the nucleoid region.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: in vitro nucleoid shape

non-pigmented colony
type: Class
subclass of: colony pigmentation phenotype
creation date: 2011-02-02T02:46:39Z
definition: A colony pigmentation phenotype colonies are non-pigmented.
created by: Adrienne
id: OMP:0000137
has_exact_synonym: colorless colony
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony pigmentation phenotype colonies are non-pigmented.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: non-pigmented colony

altered cell circularity variability
type: Class
subclass of: altered cell circularity
creation date: 2020-07-22T22:32:45Z
definition: Cell circularity is defined as (2*pi*cell area/(cell perimeter)^2).
id: OMP:0000138
has_obo_namespace: microbial_phenotype
created by: siegele

dull colony sheen
type: Class
subclass of: colony sheen phenotype
creation date: 2011-02-02T02:47:21Z
definition: A colony form phenotype characterized by a dull luster on the surface.
created by: Adrienne
id: OMP:0000139
database_cross_reference: SNOMED:P3-513150
has_related_synonym: matte
has_obo_namespace: microbial_phenotype
has_related_synonym: rough

Axiom
annotated target: A colony form phenotype characterized by a dull luster on the surface.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: dull colony sheen

nucleoid spacing
type: Class
subclass of: nucleoid phenotype
creation date: 2011-02-21T04:25:41Z
definition: A nucleoid phenotype that describes the distribution of within a cell or cells.
id: OMP:0000140
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid phenotype that describes the distribution of within a cell or cells.
database_cross_reference: OMP:AZ
annotated property: definition
annotated source: nucleoid spacing

regular nucleoid spacing
type: Class
subclass of: nucleoid spacing
creation date: 2011-02-21T04:26:57Z
definition: A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing.
id: OMP:0000141
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing.
database_cross_reference: OMP:AZ
annotated property: definition
annotated source: regular nucleoid spacing

irregular nucleoid spacing
type: Class
subclass of: nucleoid spacing
creation date: 2011-02-21T04:27:22Z
definition: A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing.
id: OMP:0000142
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing.
database_cross_reference: OMP:AZ
annotated property: definition
annotated source: irregular nucleoid spacing

single nucleoid
type: Class
subclass of: nucleoid number phenotype
creation date: 2011-02-21T04:27:48Z
definition: A nucleoid number phenotype where there is only one nucleoid region in the cell.
id: OMP:0000143
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid number phenotype where there is only one nucleoid region in the cell.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: single nucleoid

multiple nucleoids
type: Class
subclass of: nucleoid number phenotype
creation date: 2011-02-21T04:28:30Z
definition: A nucleoid number phenotype where there is more than one nucleoid regions in the cell.
id: OMP:0000144
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid number phenotype where there is more than one nucleoid regions in the cell.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: multiple nucleoids

nucleoid localization
type: Class
subclass of: nucleoid phenotype
creation date: 2011-02-21T04:30:32Z
definition: A nucleoid phenotype that describes the location of the nucleoid within a cell or cells.
id: OMP:0000145
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid phenotype that describes the location of the nucleoid within a cell or cells.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: nucleoid localization

midcell nucleoid localization
type: Class
subclass of: nucleoid localization
creation date: 2011-02-21T04:31:22Z
definition: A nucleoid localization phenotype where the nucleoid is localized at the center of the cell.
id: OMP:0000146
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid localization phenotype where the nucleoid is localized at the center of the cell.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: midcell nucleoid localization

polar nucleoid localization
type: Class
subclass of: nucleoid localization
creation date: 2011-02-21T04:31:46Z
definition: A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell.
id: OMP:0000147
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: polar nucleoid localization

quarter cell nucleoid localization
type: Class
subclass of: nucleoid localization
creation date: 2011-02-21T04:32:04Z
definition: A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell.
id: OMP:0000148
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell.
database_cross_reference: OMP:AZ
annotated property: definition
annotated source: quarter cell nucleoid localization

colony margin phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-02-02T02:47:43Z
definition: A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification.
created by: Adrienne
id: OMP:0000149
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony margin phenotype

nucleoid phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2011-02-21T04:36:21Z
definition: A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined.
id: OMP:0000150
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: adrienne
has_related_synonym: genophore
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: nucleoid phenotype

entire margin
type: Class
subclass of: colony margin phenotype
creation date: 2011-02-02T02:47:59Z
definition: A colony margin phenotype characterized by smooth growth, with no projections along the edge.
created by: Adrienne
id: OMP:0000151
database_cross_reference: SNOMEDCT:12774002
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony margin phenotype characterized by smooth growth, with no projections along the edge.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: entire margin

doublet nucleoid
type: Class
subclass of: in vitro nucleoid shape
creation date: 2011-02-22T02:27:29Z
definition: A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell.
id: OMP:0000152
created by: adrienne
has_related_synonym: dumbbell nucleoid
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: OMP:WAM
annotated target: dumbbell nucleoid
annotated source: doublet nucleoid
annotated property: has_related_synonym

Axiom
annotated target: A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: doublet nucleoid

singlet nucleoid
type: Class
subclass of: in vitro nucleoid shape
creation date: 2011-02-22T02:27:58Z
definition: A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted.
id: OMP:0000153
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: singlet nucleoid

undulate margin
type: Class
subclass of: colony margin phenotype
creation date: 2011-02-02T02:48:11Z
definition: A colony margin phenotype characterized by wavy growth along the colony edge.
created by: Adrienne
id: OMP:0000154
database_cross_reference: SNOMEDCT:48408000
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony margin phenotype characterized by wavy growth along the colony edge.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: undulate margin

Bacterial colony morphology, undulate margin
type: Axiom
annotated target: SNOMEDCT:48408000
annotated source: undulate margin
annotated property: database_cross_reference

lobate margin
type: Class
subclass of: colony margin phenotype
creation date: 2011-02-02T02:48:33Z
definition: A colony margin phenotype characterized by lobed growth along the colony edge.
created by: Adrienne
id: OMP:0000155
database_cross_reference: SNOMEDCT:36580002
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony margin phenotype characterized by lobed growth along the colony edge.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: lobate margin

erose margin
type: Class
subclass of: colony margin phenotype
creation date: 2011-02-02T02:48:46Z
definition: A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony.
created by: Adrienne
id: OMP:0000156
database_cross_reference: SNOMEDCT:86734000
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: erose margin

filiform margin
type: Class
subclass of: colony margin phenotype
creation date: 2011-02-02T02:49:05Z
definition: A colony margin phenotype characterized by thread or filamentous shaped edge.
created by: Adrienne
id: OMP:0000157
database_cross_reference: SNOMEDCT:42844005
has_related_synonym: filamentous margin
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony margin phenotype characterized by thread or filamentous shaped edge.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: filiform margin

Bacterial colony morphology, filamentous margin
type: Axiom
annotated target: SNOMEDCT:42844005
annotated source: filiform margin
annotated property: database_cross_reference

curled margin
type: Class
subclass of: colony margin phenotype
creation date: 2011-02-02T02:49:30Z
definition: A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony.
created by: Adrienne
id: OMP:0000158
database_cross_reference: SNOMEDCT:85764001
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: curled margin

absence of aerotaxis
type: Class
equivalent class: Class
  intersection of: aerotaxis phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: aerotaxis phenotype
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2011-03-02T02:06:09Z
definition: An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2).
id: OMP:0000159
created by: adrienne
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2).
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: absence of aerotaxis

flat colony elevation
type: Class
subclass of: colony elevation phenotype
creation date: 2011-02-02T02:49:49Z
definition: A colony elevation phenotype characterized by no growth above the medium.
created by: Adrienne
id: OMP:0000160
database_cross_reference: SNOMED:P3-51130
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony elevation phenotype characterized by no growth above the medium.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: flat colony elevation

raised colony elevation
type: Class
subclass of: colony elevation phenotype
creation date: 2011-02-02T02:50:01Z
definition: A colony elevation phenotype characterized by uniform growth above the medium.
created by: Adrienne
id: OMP:0000161
database_cross_reference: SNOMED:P3-51140
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony elevation phenotype characterized by uniform growth above the medium.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: raised colony elevation

convex colony elevation
type: Class
subclass of: colony elevation phenotype
creation date: 2011-02-02T02:50:11Z
definition: A colony elevation phenotype characterized by sloping up from the edges.
created by: Adrienne
id: OMP:0000162
database_cross_reference: SNOMEDCT:26875006
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony elevation phenotype characterized by sloping up from the edges.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: convex colony elevation

Bacterial colony elevation, convex
type: Axiom
annotated target: SNOMEDCT:26875006
annotated source: convex colony elevation
annotated property: database_cross_reference

pulvinate colony elevation
type: Class
subclass of: colony elevation phenotype
creation date: 2011-02-02T02:50:30Z
definition: A colony elevation phenotype characterized by sloping steeply from edges and very high in the center.
created by: Adrienne
id: OMP:0000163
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony elevation phenotype characterized by sloping steeply from edges and very high in the center.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: pulvinate colony elevation

umbonate colony elevation
type: Class
subclass of: colony elevation phenotype
creation date: 2011-02-02T02:50:42Z
definition: A colony elevation phenotype characterized by raised growth in the center.
created by: Adrienne
id: OMP:0000164
database_cross_reference: SNOMEDCT:70929009
has_obo_namespace: microbial_phenotype

Bacterial colony elevation, umbonate
type: Axiom
annotated target: SNOMEDCT:70929009
annotated source: umbonate colony elevation
annotated property: database_cross_reference

Axiom
annotated target: A colony elevation phenotype characterized by raised growth in the center.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: umbonate colony elevation

increased colony size
type: Class
subclass of: altered colony size phenotype
creation date: 2011-06-07T01:55:00Z
definition: A colony size phenotype where colony size is increased relative to a designated control.
id: OMP:0000165
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony size phenotype where colony size is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased colony size

circular colony
type: Class
subclass of: colony form phenotype
creation date: 2011-02-02T02:51:18Z
definition: A colony form phenotype characterized by growth in a round shape.
created by: Adrienne
id: OMP:0000166
database_cross_reference: SNOMEDCT:64781005
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype characterized by growth in a round shape.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: circular colony

irregular colony
type: Class
subclass of: colony form phenotype
creation date: 2011-02-02T02:51:35Z
definition: A colony form phenotype characterized by growth without a defined shape or size.
created by: Adrienne
id: OMP:0000167
database_cross_reference: SNOMEDCT:39696006
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype characterized by growth without a defined shape or size.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: irregular colony

rhizoid colony
type: Class
subclass of: colony form phenotype
creation date: 2011-02-02T02:51:57Z
definition: A colony form phenotype characterized by the growth of thin, branching projections.
created by: Adrienne
id: OMP:0000168
database_cross_reference: SNOMEDCT:113047000
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype characterized by the growth of thin, branching projections.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: rhizoid colony

spindle colony
type: Class
subclass of: colony form phenotype
creation date: 2011-02-02T02:52:30Z
definition: A colony form phenotype characterized by growth being wide in the middle then tapering at both ends.
created by: Adrienne
id: OMP:0000169
database_cross_reference: SNOMEDCT:77324006
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype characterized by growth being wide in the middle then tapering at both ends.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: spindle colony

decreased cell circularity variability
type: Class
subclass of: altered cell circularity variability
creation date: 2020-07-22T22:34:00Z
id: OMP:0000170
has_obo_namespace: microbial_phenotype
created by: siegele

microaerophile
type: Class
subclass of: commonly used descriptors
creation date: 2011-06-06T03:44:11Z
definition: An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%). A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2.
id: OMP:0000171
comment: Optimal oxygen levels for growth of typical microaerophilic bacteria is 2 to 10% O2, and growth is impaired by atmospheric oxygen levels (approx. 21%).
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%). A microbial phenotype that describes a microorganism that requires O2 for growth, but doesn't grow in the presence of atmospheric levels of O2. Optimal growth of a microaerophile occurs in environments with xx% - xx% O2.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: microaerophile

response to chemical stimulus phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2011-06-06T04:16:08Z
definition: A stress response phenotype dealing with the response to exposure to chemical stimuli.
id: OMP:0000172
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype dealing with the response to exposure to chemical stimuli.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to chemical stimulus phenotype

response to stress phenotype
type: Class
subclass of: biological process phenotype
creation date: 2011-02-02T03:13:32Z
definition: A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
created by: Adrienne
id: OMP:0000173
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
database_cross_reference: FYPO:0002549
database_cross_reference: GO:0006950
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to stress phenotype

growth phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: growth
subclass of: biological process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: growth
creation date: 2011-02-02T03:13:59Z
definition: A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell.
created by: Adrienne
database_cross_reference: GO:0040007
id: OMP:0000174
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. For phenotypes affecting growth of a population, see OMP:0007167 ! population growth phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

growth
type: Axiom
annotated target: GO:0040007
annotated source: growth phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell.
database_cross_reference: GO:0040007
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: growth phenotype

nanotube phenotype
type: Class
subclass of: cell projection morphology phenotype
creation date: 2011-06-07T02:59:54Z
definition: A cell projection phenotype where the structure in question is a tube.
id: OMP:0000175
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell projection phenotype where the structure in question is a tube.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nanotube phenotype

biofilm formation phenotype
type: Class
subclass of: multi-organism process phenotype
creation date: 2011-02-02T03:17:19Z
definition: A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation.
created by: Adrienne
id: OMP:0000176
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation.
database_cross_reference: GO:0042710
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: biofilm formation phenotype

liquid culture morphology phenotype
type: Class
subclass of: population morphology phenotype
creation date: 2011-02-02T03:20:39Z
definition: A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium.
database_cross_reference: APO:0000064
created by: Adrienne
id: OMP:0000177
has_obo_namespace: microbial_phenotype

liquid culture appearance
type: Axiom
annotated target: APO:0000064
annotated source: liquid culture morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: liquid culture morphology phenotype

flocculation phenotype
type: Class
subclass of: liquid culture morphology phenotype
creation date: 2011-02-02T03:21:00Z
definition: A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs.
database_cross_reference: APO:0000065
created by: Adrienne
id: OMP:0000178
has_broad_synonym: clumping
has_exact_synonym: flocculation
has_obo_namespace: microbial_phenotype

flocculation
type: Axiom
annotated target: APO:0000065
annotated source: flocculation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs.
database_cross_reference: GO:0000128
database_cross_reference: ISBN:9780763743031
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: flocculation phenotype

colony size phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-02-02T03:22:43Z
definition: A colony morphology phenotype dealing with the size of the colony.
created by: Adrienne
id: OMP:0000179
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype dealing with the size of the colony.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony size phenotype

metabolic phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-06-06T03:59:59Z
definition: A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances.
has_exact_synonym: Metabolism
id: OMP:0000180
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances.
database_cross_reference: GO:0008152
annotated property: definition
annotated source: metabolic phenotype

colony with diffusible pigment
type: Class
subclass of: pigmented colony
creation date: 2011-06-07T12:18:54Z
definition: A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony.
id: OMP:0000181
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony with diffusible pigment

gas production test
type: Class
subclass of: differential test phenotype
creation date: 2011-02-07T03:52:30Z
definition: A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth.
created by: Adrienne
id: OMP:0000182
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: gas production test

anaerobic respiration with sulfate as the terminal acceptor
type: Class
subclass of: presence of anaerobic respiration
creation date: 2011-02-07T03:52:44Z
definition: A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor.
created by: Adrienne
database_cross_reference: GO:0019420
id: OMP:0000183
has_exact_synonym: dissimilatory sulfate reduction
has_obo_namespace: microbial_phenotype
has_narrow_synonym: sulfide production

Axiom
database_cross_reference: ISBN:978-0-07-340240-6
annotated target: dissimilatory sulfate reduction
annotated source: anaerobic respiration with sulfate as the terminal acceptor
annotated property: has_exact_synonym

dissimilatory sulfate reduction
type: Axiom
annotated target: GO:0019420
annotated source: anaerobic respiration with sulfate as the terminal acceptor
annotated property: database_cross_reference

Axiom
annotated target: A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: anaerobic respiration with sulfate as the terminal acceptor

obligate anaerobe
type: Class
subclass of: commonly used descriptors
creation date: 2011-02-02T03:29:34Z
definition: A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2).
created by: Adrienne
id: OMP:0000184
has_obo_namespace: microbial_phenotype
has_exact_synonym: strict anaerobe

Axiom
annotated target: A microbial phenotype that describes a microorganism that does not grow in the presence of oxygen gas (O2).
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: obligate anaerobe

obligate aerobe
type: Class
subclass of: commonly used descriptors
creation date: 2011-02-02T03:29:51Z
definition: A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth.
created by: Adrienne
id: OMP:0000185
has_obo_namespace: microbial_phenotype
has_exact_synonym: strict aerobe

Axiom
annotated target: A microbial phenotype that describes a microorganism that requires the presence of oxygen gas (O2) for growth.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: obligate aerobe

increased cell circularity variability
type: Class
subclass of: altered cell circularity variability
creation date: 2020-07-22T22:34:00Z
id: OMP:0000186
has_obo_namespace: microbial_phenotype
created by: siegele

granulation phenotype
type: Class
subclass of: liquid culture morphology phenotype
creation date: 2011-06-07T02:22:14Z
definition: A liquid culture morphology phenotype where cells group together and form small particles in the medium.
id: OMP:0000187
has_exact_synonym: granulation in liquid
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: precipitation in liquid culture

Axiom
annotated target: A liquid culture morphology phenotype where cells group together and form small particles in the medium.
database_cross_reference: ISBN:9780763743031
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: granulation phenotype

gram positive
type: Class
subclass of: gram stain phenotype
creation date: 2011-02-02T03:34:29Z
definition: A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol.
created by: Adrienne
database_cross_reference: GO:0009275
id: OMP:0000188
has_obo_namespace: microbial_phenotype

Gram-positive-bacterium-type cell wall
type: Axiom
annotated target: GO:0009275
annotated source: gram positive
annotated property: database_cross_reference

Axiom
annotated target: A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: gram positive

gram negative
type: Class
subclass of: gram stain phenotype
creation date: 2011-02-02T03:34:45Z
definition: A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol.
created by: Adrienne
database_cross_reference: GO:0009276
id: OMP:0000189
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: gram negative

Gram-negative-bacterium-type cell wall
type: Axiom
annotated target: GO:0009276
annotated source: gram negative
annotated property: database_cross_reference

gram variable
type: Class
subclass of: gram stain phenotype
creation date: 2011-02-02T03:34:58Z
definition: A gram stain phenotype where a cell or cells give variable results to the gram stain.
created by: Adrienne
id: OMP:0000190
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A gram stain phenotype where a cell or cells give variable results to the gram stain.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: gram variable

gram stain phenotype
type: Class
subclass of: cell staining phenotype
creation date: 2011-02-02T03:35:15Z
definition: A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol.
created by: Adrienne
id: OMP:0000191
database_cross_reference: SNOMEDCT:385484003
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: ISBN:978-0077292812
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: gram stain phenotype

Gram stain
type: Axiom
annotated target: SNOMEDCT:385484003
annotated source: gram stain phenotype
annotated property: database_cross_reference

chemical production phenotype
type: Class
subclass of: metabolic phenotype
creation date: 2011-02-03T11:24:08Z
definition: A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals.
created by: Adrienne
id: OMP:0000192
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: chemical production phenotype

altered cell aspect ratio
type: Class
subclass of: cell aspect ratio phenotype
subclass of: altered cell shape
creation date: 2020-07-22T22:35:03Z
definition: An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control.
id: OMP:0000193
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell shape phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell aspect ratio

catalase positive
type: Class
subclass of: catalase test phenotype
creation date: 2011-06-06T04:28:49Z
definition: A catalase test phenotype where an organism exhibits catalase activity.
id: OMP:0000194
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A catalase test phenotype where an organism exhibits catalase activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: catalase positive

decreased catalase activity
type: Class
subclass of: altered catalase test result
creation date: 2011-06-06T04:29:20Z
definition: An altered catalase activity phenotype where catalase activity is decreased relative to a designated control.
id: OMP:0000195
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered catalase activity phenotype where catalase activity is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased catalase activity

increased catalase activity
type: Class
subclass of: altered catalase test result
creation date: 2011-06-06T04:29:39Z
definition: An altered catalase activity phenotype where catalase activity is increased relative to a designated control.
id: OMP:0000196
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_narrow_synonym: positive regulation of catalase activity

Axiom
database_cross_reference: GO:1902553
annotated target: positive regulation of catalase activity
annotated source: increased catalase activity
annotated property: has_narrow_synonym

Axiom
annotated target: An altered catalase activity phenotype where catalase activity is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased catalase activity

microbe-host interaction phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-02-03T11:25:01Z
definition: A microbial phenotype related to the interactions between a microbe and its host(s).
database_cross_reference: APO:0000287
created by: Adrienne
database_cross_reference: GO:0051704
id: OMP:0000197
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to the interactions between a microbe and its host(s).
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: microbe-host interaction phenotype

interaction with host/environment
type: Axiom
annotated target: APO:0000287
annotated source: microbe-host interaction phenotype
annotated property: database_cross_reference

multi-organism process
type: Axiom
annotated target: GO:0051704
annotated source: microbe-host interaction phenotype
annotated property: database_cross_reference

catalase negative
type: Class
subclass of: catalase test phenotype
creation date: 2011-06-06T04:30:12Z
definition: A catalase test phenotype where an organism doesn't exhibit catalase activity.
id: OMP:0000198
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A catalase test phenotype where an organism doesn't exhibit catalase activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: catalase negative

acid-fast staining phenotype
type: Class
subclass of: cell staining phenotype
creation date: 2011-02-03T11:38:46Z
definition: A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin.
created by: Adrienne
id: OMP:0000199
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin.
database_cross_reference: ISBN:978-0-07-729281-1
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: acid-fast staining phenotype

colony with non-diffusible pigment
type: Class
subclass of: pigmented colony
creation date: 2011-06-07T12:19:32Z
definition: A colony pigmentation phenotype characterized by pigmentation only in the colony.
id: OMP:0000200
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony pigmentation phenotype characterized by pigmentation only in the colony.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony with non-diffusible pigment

nanotube mediated communication
type: Class
subclass of: microbial communication phenotype
creation date: 2011-03-02T01:41:52Z
definition: A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube.
created by: Adrienne
id: OMP:0000201
has_obo_namespace: microbial_phenotype
has_exact_synonym: nanotubule mediated communication

Axiom
annotated target: A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube.
database_cross_reference: OMP:WAM
database_cross_reference: PMID:21335240
annotated property: definition
annotated source: nanotube mediated communication

outer membrane vesicles phenotype
type: Class
subclass of: cell envelope morphology phenotype
creation date: 2011-03-02T01:43:12Z
definition: A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles.
created by: Adrienne
id: OMP:0000202
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles.
database_cross_reference: OMP:JCH
database_cross_reference: PMID:20825345
annotated property: definition
annotated source: outer membrane vesicles phenotype

capsule phenotype
type: Class
subclass of: cell envelope morphology phenotype
creation date: 2011-06-07T09:44:51Z
definition: A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope.
database_cross_reference: APO:0000331
id: OMP:0000203
has_related_synonym: glycocalyx
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: slime layer

capsule formation
type: Axiom
annotated target: APO:0000331
annotated source: capsule phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: capsule phenotype

presence of capsule
type: Class
subclass of: capsule phenotype
creation date: 2011-06-07T09:45:20Z
definition: A capsule phenotype where a cell or cells have a capsule.
id: OMP:0000204
comment: When present, the capsule layer lies outside the cell wall and/or outer membrane.
has_related_synonym: glycocalyx
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: slime layer

Axiom
database_cross_reference: OMP:DAS
annotated target: slime layer
annotated source: presence of capsule
annotated property: has_related_synonym

Axiom
database_cross_reference: OMP:DAS
annotated target: glycocalyx
annotated source: presence of capsule
annotated property: has_related_synonym

Axiom
annotated target: A capsule phenotype where a cell or cells have a capsule.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of capsule

forms single species biofilm
type: Class
subclass of: biofilm formation phenotype
creation date: 2011-06-07T02:26:30Z
definition: A biofilm phenotype where the biofilm is formed by a single species.
id: OMP:0000205
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A biofilm phenotype where the biofilm is formed by a single species.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: forms single species biofilm

altered hemolysis test result
type: Class
subclass of: hemolysis test
subclass of: altered differential test result
creation date: 2011-06-07T03:17:46Z
definition: A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control.
id: OMP:0000206
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered hemolysis test result

serotype phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-03-02T02:16:33Z
definition: A microbial phenotype that is distinguished by the presence a specific surface antigen.
created by: Adrienne
id: OMP:0000207
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_related_synonym: antigenic typing phenotype
has_obo_namespace: microbial_phenotype
has_related_synonym: serological test phenotype
has_exact_synonym: serovar
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that is distinguished by the presence a specific surface antigen.
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: serotype phenotype

absence of hemolysis
type: Class
subclass of: hemolysis test
creation date: 2011-06-07T03:18:33Z
definition: A hemolysis test phenotype where a cell or cells does not cause hemolysis.
id: OMP:0000208
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A hemolysis test phenotype where a cell or cells does not cause hemolysis.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of hemolysis

fluorescent colony
type: Class
subclass of: colony pigmentation phenotype
creation date: 2011-06-07T12:20:31Z
definition: A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence.
id: OMP:0000209
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: fluorescent colony

colony surface phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-06-07T12:31:24Z
definition: A colony morphology phenotype that describes the appearance of the surface of a colony or colonies.
id: OMP:0000210
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype that describes the appearance of the surface of a colony or colonies.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony surface phenotype

absence of capsule
type: Class
subclass of: capsule phenotype
creation date: 2011-06-07T09:49:20Z
definition: A capsule phenotype where a cell or cells lack capsule.
id: OMP:0000211
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A capsule phenotype where a cell or cells lack capsule.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of capsule

smooth colony surface
type: Class
subclass of: colony surface phenotype
creation date: 2011-06-07T12:32:12Z
definition: A colony surface phenotype where colonies have a shiny glistening surface.
id: OMP:0000212
database_cross_reference: SNOMEDCT:90926009
created by: mchibucos
has_obo_namespace: microbial_phenotype

Bacterial colony surface, smooth
type: Axiom
annotated target: SNOMEDCT:90926009
annotated source: smooth colony surface
annotated property: database_cross_reference

Axiom
annotated target: A colony surface phenotype where colonies have a shiny glistening surface.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: smooth colony surface

increased number of flagella
type: Class
subclass of: altered number of flagella
creation date: 2011-06-07T09:53:17Z
definition: An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control.
id: OMP:0000213
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased number of flagella

cell staining phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-02-03T01:33:37Z
definition: A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification.
database_cross_reference: APO:0000061
created by: Adrienne
id: OMP:0000214
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cell staining phenotype

colony color
type: Axiom
annotated target: APO:0000061
annotated source: cell staining phenotype
annotated property: database_cross_reference

decreased number of flagella
type: Class
subclass of: altered number of flagella
creation date: 2011-06-07T09:54:51Z
definition: An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control.
id: OMP:0000215
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased number of flagella

aerobic respiration phenotype
type: Class
subclass of: respiration phenotype
creation date: 2011-02-07T03:53:18Z
definition: A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor.
created by: Adrienne
id: OMP:0000216
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: aerobic respiration phenotype

increased hemolysis
type: Class
subclass of: altered hemolysis test result
creation date: 2011-06-07T03:19:00Z
definition: An altered hemolysis phenotype where hemolysis is increased relative to a designated control.
id: OMP:0000217
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered hemolysis phenotype where hemolysis is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased hemolysis

catalase test phenotype
type: Class
subclass of: differential test phenotype
creation date: 2011-02-03T04:43:28Z
definition: A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water.
created by: Adrienne
database_cross_reference: GO:0004096
id: OMP:0000218
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O [EC:1.11.1.6].
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

catalase activity
type: Axiom
annotated target: GO:0004096
annotated source: catalase test phenotype
annotated property: database_cross_reference

Axiom
annotated target: A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water.
database_cross_reference: ISBN:9780895828309
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: catalase test phenotype

decarboxylase test phenotype
type: Class
subclass of: differential test phenotype
creation date: 2011-02-03T04:43:53Z
definition: A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine.
created by: Adrienne
id: OMP:0000219
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine.
database_cross_reference: ISBN:9780895828309
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decarboxylase test phenotype

oxidase test phenotype
type: Class
subclass of: differential test phenotype
creation date: 2011-02-03T04:44:11Z
definition: A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products.
created by: Adrienne
id: OMP:0000220
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products.
database_cross_reference: ISBN:9780895828309
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: oxidase test phenotype

enzymatic activity phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-02-03T04:44:39Z
definition: A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes.
created by: Adrienne
database_cross_reference: FYPO:0000654
database_cross_reference: GO:0003824
id: OMP:0000221
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_related_synonym: catalytic activity
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes.
database_cross_reference: ISBN:0198506732
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: enzymatic activity phenotype

catalytic activity
type: Axiom
annotated target: GO:0003824
annotated source: enzymatic activity phenotype
annotated property: database_cross_reference

catalytic activity phenotype
type: Axiom
annotated target: FYPO:0000654
annotated source: enzymatic activity phenotype
annotated property: database_cross_reference

urease test phenotype
type: Class
subclass of: differential test phenotype
creation date: 2011-02-03T04:45:37Z
definition: A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide.
created by: Adrienne
database_cross_reference: GO:0009039
id: OMP:0000222
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide.
database_cross_reference: ISBN:9780895828309
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: urease test phenotype

urease activity
type: Axiom
annotated target: GO:0009039
annotated source: urease test phenotype
annotated property: database_cross_reference

decreased cell aspect ratio
type: Class
subclass of: altered cell aspect ratio
creation date: 2020-07-22T22:36:00Z
definition: An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control.
id: OMP:0000223
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cell aspect ratio

energy metabolism phenotype
type: Class
subclass of: metabolic phenotype
creation date: 2011-06-06T04:53:09Z
definition: A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers.
id: OMP:0000224
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: bioenergetics
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: energy metabolism phenotype

carbon dioxide production
type: Class
subclass of: chemical production phenotype
creation date: 2011-02-07T03:53:37Z
definition: A chemical production phenotype where carbon dioxide is produced.
created by: Adrienne
id: OMP:0000225
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chemical production phenotype where carbon dioxide is produced.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: carbon dioxide production

increased cell aspect ratio
type: Class
subclass of: altered cell aspect ratio
creation date: 2020-07-22T22:36:00Z
definition: An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control.
id: OMP:0000226
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell aspect ratio phenotype where the cell aspect ratio (cell diameter/cell length) of a microbial cell is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased cell aspect ratio

altered cell aspect ratio variability
type: Class
subclass of: altered cell aspect ratio
creation date: 2020-07-22T22:37:16Z
id: OMP:0000227
has_obo_namespace: microbial_phenotype
created by: siegele

rough colony surface
type: Class
subclass of: colony surface phenotype
creation date: 2011-06-07T12:32:41Z
definition: A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface.
id: OMP:0000228
database_cross_reference: SNOMEDCT:77092005
created by: mchibucos
has_obo_namespace: microbial_phenotype

Bacterial colony surface, rough
type: Axiom
annotated target: SNOMEDCT:77092005
annotated source: rough colony surface
annotated property: database_cross_reference

Axiom
annotated target: A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: rough colony surface

colony consistency phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-06-07T12:34:58Z
definition: A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle.
id: OMP:0000229
has_related_synonym: colony texture
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony consistency phenotype

rugose colony surface
type: Class
subclass of: colony surface phenotype
creation date: 2011-06-07T12:35:30Z
definition: A colony surface phenotype that is characterized by a surface that is wrinkled.
id: OMP:0000230
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: wrinkled colony surface

Axiom
annotated target: A colony surface phenotype that is characterized by a surface that is wrinkled.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: rugose colony surface

growth into medium
type: Class
subclass of: colony elevation phenotype
creation date: 2011-06-07T12:38:26Z
definition: A colony elevation phenotype characterized by growth into the medium not above it.
id: OMP:0000231
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony elevation phenotype characterized by growth into the medium not above it.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: growth into medium

iridescent colony
type: Class
subclass of: colony pigmentation phenotype
creation date: 2011-06-07T12:39:13Z
definition: A colony opacity phenotype characterized by varying colors being observed in reflected light.
id: OMP:0000232
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony opacity phenotype characterized by varying colors being observed in reflected light.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: iridescent colony

decreased cell aspect ratio variability
type: Class
subclass of: altered cell aspect ratio variability
creation date: 2020-07-22T22:38:22Z
id: OMP:0000233
has_obo_namespace: microbial_phenotype
created by: siegele

butyrous colony consistency
type: Class
subclass of: colony consistency phenotype
creation date: 2011-06-07T12:41:24Z
definition: A colony consistency phenotype where a colony or colonies have a butter-like consistency.
id: OMP:0000234
database_cross_reference: SNOMEDCT:25778006
has_exact_synonym: buttery colony consistency
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony consistency phenotype where a colony or colonies have a butter-like consistency.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: butyrous colony consistency

Bacterial colony consistency, butyrous
type: Axiom
annotated target: SNOMEDCT:25778006
annotated source: butyrous colony consistency
annotated property: database_cross_reference

increased cell aspect ratio variability
type: Class
subclass of: altered cell aspect ratio variability
creation date: 2020-07-22T22:38:22Z
id: OMP:0000235
has_obo_namespace: microbial_phenotype
created by: siegele

dry colony consistency
type: Class
subclass of: colony consistency phenotype
creation date: 2011-06-07T12:42:40Z
definition: A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency.
id: OMP:0000236
database_cross_reference: SNOMEDCT:87916001
has_exact_synonym: friable colony
created by: mchibucos
has_obo_namespace: microbial_phenotype

Bacterial colony consistency, friable
type: Axiom
annotated target: SNOMEDCT:87916001
annotated source: dry colony consistency
annotated property: database_cross_reference

Axiom
annotated target: A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: dry colony consistency

colony odor phenotype
type: Class
subclass of: colony morphology phenotype
creation date: 2011-06-07T12:45:12Z
definition: A morphology phenotype dealing with the smell a colony produces.
id: OMP:0000237
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A morphology phenotype dealing with the smell a colony produces.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: colony odor phenotype

crateriform colony elevation
type: Class
subclass of: colony elevation phenotype
creation date: 2011-06-07T01:11:04Z
definition: A colony elevation phenotype characterized by crater like growth.
id: OMP:0000238
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony elevation phenotype characterized by crater like growth.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: crateriform colony elevation

plicate colony surface
type: Class
subclass of: colony surface phenotype
creation date: 2011-06-07T01:11:50Z
definition: A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated.
id: OMP:0000239
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: plicate colony surface

punctiform colony
type: Class
subclass of: colony form phenotype
creation date: 2011-06-07T01:50:03Z
definition: A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm.
id: OMP:0000240
database_cross_reference: SNOMEDCT:55699002
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: punctiform colony

decreased colony size
type: Class
subclass of: altered colony size phenotype
creation date: 2011-06-07T01:55:22Z
definition: A colony size phenotype where colony size is decreased relative to a designated control.
id: OMP:0000241
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony size phenotype where colony size is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased colony size

concentrically ringed surface colony
type: Class
subclass of: colony surface phenotype
creation date: 2011-06-07T01:58:00Z
definition: A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis.
id: OMP:0000242
has_exact_synonym: concentric colony surface texture
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: concentrically ringed surface colony

sectored colony
type: Class
subclass of: colony form phenotype
creation date: 2011-06-07T02:04:20Z
definition: A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate.
id: OMP:0000243
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: sectored colony

papillated colony
type: Class
subclass of: colony form phenotype
creation date: 2011-06-07T02:06:19Z
definition: A colony form phenotype characterized by growth of small, round or cone-shaped protuberances.
id: OMP:0000244
has_exact_synonym: colony papillation
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colony form phenotype characterized by growth of small, round or cone-shaped protuberances.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: papillated colony

participates in multi-species biofilm
type: Class
subclass of: biofilm formation phenotype
creation date: 2011-06-07T02:27:00Z
definition: A biofilm phenotype where the formation involves two or more species.
id: OMP:0000245
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A biofilm phenotype where the formation involves two or more species.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: participates in multi-species biofilm

presence of nanotubes
type: Class
subclass of: nanotube phenotype
creation date: 2011-06-07T03:00:25Z
definition: A nanotube phenotype where a cell or cells have the ability to produce nanotubes.
id: OMP:0000246
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nanotube phenotype where a cell or cells have the ability to produce nanotubes.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: presence of nanotubes

absence of nanotubes
type: Class
subclass of: nanotube phenotype
creation date: 2011-06-07T03:01:32Z
definition: A nanotube phenotype where a cell or cells lack the ability to produce nanotubes.
id: OMP:0000247
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nanotube phenotype where a cell or cells lack the ability to produce nanotubes.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of nanotubes

biofilm architecture phenotype
type: Class
subclass of: biofilm formation phenotype
creation date: 2011-06-07T03:05:56Z
definition: A biofilm phenotype dealing with the structural formation of the biofilm.
id: OMP:0000248
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A biofilm phenotype dealing with the structural formation of the biofilm.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: biofilm architecture phenotype

decreased hemolysis
type: Class
subclass of: altered hemolysis test result
creation date: 2011-06-07T03:19:25Z
definition: An altered hemolysis phenotype where hemolysis is decreased relative to a designated control.
id: OMP:0000249
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered hemolysis phenotype where hemolysis is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased hemolysis

altered cell division
type: Class
subclass of: altered cellular process during vegetative growth
creation date: 2020-07-22T22:55:26Z
definition: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control.
id: OMP:0000250
has_narrow_synonym: abnormal cell division
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell division is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell division

Axiom
database_cross_reference: FYPO:0000186
annotated target: abnormal cell division
annotated source: altered cell division
annotated property: has_narrow_synonym

altered cell division ratio variability
type: Class
subclass of: altered cell division
subclass of: altered cell population phenotype
creation date: 2020-07-22T22:58:18Z
id: OMP:0000251
has_obo_namespace: microbial_phenotype
created by: siegele

metabolite accumulation
type: Class
subclass of: metabolic phenotype
creation date: 2011-07-21T12:51:15Z
definition: A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism.
id: OMP:0000252
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: metabolite accumulation

gene expression phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: gene expression
subclass of: biological process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: gene expression
creation date: 2011-07-21T01:03:06Z
definition: A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation.
database_cross_reference: FYPO:0000142
database_cross_reference: GO:0010467
id: OMP:0000253
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation.
database_cross_reference: ISBN:9781615835409
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: gene expression phenotype

gene expression
type: Axiom
annotated target: GO:0010467
annotated source: gene expression phenotype
annotated property: database_cross_reference

gene expression phenotype
type: Axiom
annotated target: FYPO:0000142
annotated source: gene expression phenotype
annotated property: database_cross_reference

constitutive transcription
type: Class
subclass of: increased transcription of gene or operon
creation date: 2011-07-21T01:05:42Z
definition: An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively.
id: OMP:0000254
has_exact_synonym: constitutive gene expression
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: constitutive transcription

plating morphology phenotype
type: Class
creation date: 2011-07-21T01:34:48Z
definition: A growth phenotype related to the morphology of colonies on solid medium.
id: OMP:0000255
comment: This term was made obsolete because it is redundant with OMP:0000100 ! colony morphology phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: A growth phenotype related to the morphology of colonies on solid medium.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: plating morphology phenotype

MacConkey agar phenotype
type: Class
creation date: 2011-07-21T01:35:25Z
definition: A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium. ** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself.
id: OMP:0000256
comment: This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium. ** This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself.
database_cross_reference: OMP:AZ
annotated property: definition
annotated source: MacConkey agar phenotype

decreased cell division ratio variability
type: Class
subclass of: altered cell division ratio variability
creation date: 2020-07-22T23:00:48Z
id: OMP:0000257
has_obo_namespace: microbial_phenotype
created by: siegele

red colony on MacConkey agar
type: Class
creation date: 2011-07-21T01:38:10Z
definition: A colony morphology phenotype where cells form a red colony on MacConkey agar medium.
id: OMP:0000258
comment: This term was made obsolete because 'red colony on MacConkey agar' was determined to be evidence for a phenotype, i.e. utilization of a particular sugar, rather than the phenotype itself.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: A colony morphology phenotype where cells form a red colony on MacConkey agar medium.
database_cross_reference: OMP:AZ
annotated property: definition
annotated source: red colony on MacConkey agar

increased cell division ratio variability
type: Class
subclass of: altered cell division ratio variability
creation date: 2020-07-22T23:00:48Z
id: OMP:0000259
has_obo_namespace: microbial_phenotype
created by: siegele

altered nucleoid area
type: Class
subclass of: nucleoid area phenotype
creation date: 2020-07-22T23:02:57Z
id: OMP:0000260
has_obo_namespace: microbial_phenotype
created by: siegele

decreased nucleoid area
type: Class
subclass of: altered nucleoid area
creation date: 2020-07-22T23:04:02Z
id: OMP:0000261
has_obo_namespace: microbial_phenotype
created by: siegele

increased nucleoid area
type: Class
subclass of: altered nucleoid area
creation date: 2020-07-22T23:04:02Z
id: OMP:0000262
has_obo_namespace: microbial_phenotype
created by: siegele

altered nucleoid area variability
type: Class
subclass of: altered cell population phenotype
creation date: 2020-07-22T23:05:16Z
id: OMP:0000263
has_obo_namespace: microbial_phenotype
created by: siegele

decreased nucleoid area variability
type: Class
subclass of: altered nucleoid area variability
creation date: 2020-07-22T23:06:26Z
id: OMP:0000264
has_obo_namespace: microbial_phenotype
created by: siegele

increased nucleoid area variability
type: Class
subclass of: altered nucleoid area variability
creation date: 2020-07-22T23:06:26Z
id: OMP:0000265
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell population growth rate
type: Class
subclass of: altered cell population growth
subclass of: cell population growth rate phenotype
creation date: 2020-07-22T23:15:57Z
id: OMP:0000266
has_obo_namespace: microbial_phenotype
created by: siegele

increased gene expression
type: Class
subclass of: altered gene expression
creation date: 2011-07-21T02:01:35Z
definition: An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control.
id: OMP:0000267
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased gene expression

decreased gene expression
type: Class
subclass of: altered gene expression
creation date: 2011-07-21T02:02:26Z
definition: An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control.
id: OMP:0000268
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased gene expression

protein activity phenotype
type: Class
creation date: 2011-07-21T02:05:51Z
definition: A microbial phenotype related to the enzymatic or other activity of a protein.
id: OMP:0000269
comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. During OMP call on 2016-01-27 we decided to delete the term OMP:0000269 ! protein activity phenotype because when observing a phenotype we don't know what kind of molecule is doing something, just that a particular activity is absent, present, or altered.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: A microbial phenotype related to the enzymatic or other activity of a protein.
database_cross_reference: APO:0000022
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: protein activity phenotype

decreased cell population growth rate
type: Class
subclass of: altered cell population growth rate
creation date: 2020-07-22T23:16:35Z
id: OMP:0000270
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell population growth rate
type: Class
subclass of: altered cell population growth rate
creation date: 2020-07-22T23:16:35Z
id: OMP:0000271
has_obo_namespace: microbial_phenotype
created by: siegele

cell morphology variability
type: Class
subclass of: cell population phenotype
creation date: 2020-07-23T10:45:45Z
id: OMP:0000272
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell perimeter length
type: Class
subclass of: cell perimeter length phenotype
subclass of: altered cell size
creation date: 2020-07-23T11:13:40Z
id: OMP:0000273
has_obo_namespace: microbial_phenotype
created by: siegele

antimicrobial agent resistance phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: towards
    some values from: antimicrobial agent
subclass of: chemical resistance phenotype
subclass of: Restriction
  on property: towards
  some values from: antimicrobial agent
creation date: 2011-07-21T02:21:21Z
definition: A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe.
database_cross_reference: CHEBI:33281
id: OMP:0000274
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: antibiotic resistance phenotype
has_related_synonym: antibiotic sensitivity phenotype
has_narrow_synonym: antifungal resistance phenotype
has_narrow_synonym: antimetabolite resistance phenotype
has_related_synonym: antimicrobial compound sensitivity phenotype
has_narrow_synonym: antiviral resistance phenotype
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

antimicrobial agent
type: Axiom
annotated target: CHEBI:33281
annotated source: antimicrobial agent resistance phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbial phenotype related to the resistance or sensitivity of a microbe to antimicrobial agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe.
database_cross_reference: CHEBI:33281
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: antimicrobial agent resistance phenotype

decreased cell perimeter
type: Class
subclass of: altered cell perimeter length
creation date: 2020-07-23T11:14:11Z
id: OMP:0000275
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell perimeter
type: Class
subclass of: altered cell perimeter length
creation date: 2020-07-23T11:14:11Z
id: OMP:0000276
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell perimeter length variability
type: Class
subclass of: altered cell population phenotype
subclass of: altered cell size
subclass of: altered cell size variability within a cell population
creation date: 2020-07-23T11:14:34Z
id: OMP:0000277
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell perimeter length variability
type: Class
subclass of: altered cell perimeter length variability
creation date: 2020-07-23T11:15:25Z
id: OMP:0000278
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell perimeter length variability
type: Class
subclass of: altered cell perimeter length variability
creation date: 2020-07-23T11:15:25Z
id: OMP:0000279
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell length
type: Class
subclass of: increased cell size
subclass of: altered cell length
creation date: 2011-07-21T02:37:15Z
definition: An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control.
database_cross_reference: FYPO:0000017
id: OMP:0000280
comment: The mukB mutant appear to have elongated cell length. This is different from cell filamentation. PMID:1989883.
created by: mchibucos
has_obo_namespace: microbial_phenotype

elongated cell
type: Axiom
annotated target: FYPO:0000017
annotated source: increased cell length
annotated property: database_cross_reference

Axiom
annotated target: An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased cell length

altered cell population phenotype
type: Class
subclass of: cell population phenotype
subclass of: altered population phenotype
creation date: 2020-07-23T11:38:45Z
id: OMP:0000281
has_obo_namespace: microbial_phenotype
created by: siegele

decreased population growth rate
type: Class
subclass of: altered population growth rate
creation date: 2011-07-21T02:43:01Z
definition: An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control.
id: OMP:0000282
has_exact_synonym: decreased growth rate
has_narrow_synonym: increased doubling time
has_exact_synonym: increased generation time
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered population growth rate phenotype where the rate at which a microbial population multiplies is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased population growth rate

increased population growth rate
type: Class
subclass of: altered population growth rate
creation date: 2011-07-21T02:43:22Z
definition: An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control.
id: OMP:0000283
has_narrow_synonym: decreased doubling time
has_exact_synonym: decreased generation time
has_exact_synonym: increased growth rate
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered growth rate phenotype where the rate at which a microbial population multiplies is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased population growth rate

altered cell population growth yield
type: Class
subclass of: cell population growth yield phenotype
subclass of: altered cell population growth
creation date: 2020-07-23T12:28:35Z
id: OMP:0000284
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell population growth yield
type: Class
subclass of: altered cell population growth yield
creation date: 2020-07-23T12:29:32Z
id: OMP:0000285
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell population growth yield
type: Class
subclass of: altered cell population growth yield
creation date: 2020-07-23T12:29:32Z
id: OMP:0000286
has_obo_namespace: microbial_phenotype
created by: siegele

altered fraction of non-constricted cells
type: Class
subclass of: altered cell division during cell population growth
creation date: 2020-07-23T12:46:03Z
id: OMP:0000287
has_obo_namespace: microbial_phenotype
definition: population growth phenotype
created by: siegele

decreased fraction of non-constricted cells
type: Class
subclass of: altered fraction of non-constricted cells
creation date: 2020-07-23T12:47:02Z
id: OMP:0000288
has_obo_namespace: microbial_phenotype
created by: siegele

increased number of anucleoid cells
type: Class
subclass of: anucleoid
creation date: 2011-07-21T04:07:44Z
definition: An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control.
comment: In Escherichia coli mutations in the muk or par genes result in an increased number of anucleoid cells.
id: OMP:0000289
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased number of anucleoid cells

genetic material phenotype
type: Class
subclass of: microbial phenotype
creation date: 2011-07-21T04:24:02Z
definition: A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information.
id: OMP:0000290
has_narrow_synonym: RNA
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: double stranded DNA
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_narrow_synonym: single stranded DNA
in_subset: qc do not manually annotate

Axiom
database_cross_reference: ISBN:9780198529170
annotated target: RNA
annotated source: genetic material phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: A microbial phenotype dealing with the various aspects of the nucleic acid carrier of a microbe's primary genetic information.
database_cross_reference: ISBN:9780198529170
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: genetic material phenotype

Axiom
database_cross_reference: ISBN:9780198529170
annotated target: double stranded DNA
annotated source: genetic material phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: ISBN:9780198529170
annotated target: single stranded DNA
annotated source: genetic material phenotype
annotated property: has_narrow_synonym

genophore phenotype
type: Class
creation date: 2011-07-21T04:25:09Z
definition: A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes.
id: OMP:0000291
comment: This term was obsoleted because it is rarely used. Instead, genophore phenotype is listed as a synonym of nucleoid phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes.
database_cross_reference: ISBN:9780195307610
database_cross_reference: ISBN:9781613441138
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: genophore phenotype

increased fraction of non-constricted cells
type: Class
subclass of: altered fraction of non-constricted cells
creation date: 2020-07-23T12:47:02Z
id: OMP:0000292
has_obo_namespace: microbial_phenotype
created by: siegele

altered fraction of cells with one nucleoid
type: Class
subclass of: nucleoid number phenotype
creation date: 2020-07-23T12:50:06Z
id: OMP:0000293
has_obo_namespace: microbial_phenotype
created by: siegele

DNA supercoiling phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2011-07-21T04:46:29Z
definition: A genetic material phenotype related to supercoiling of a double-stranded DNA molecule.
id: OMP:0000294
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype related to supercoiling of a double-stranded DNA molecule.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: DNA supercoiling phenotype

presence of negative supercoiling
type: Class
subclass of: DNA supercoiling phenotype
creation date: 2011-07-21T04:47:38Z
definition: A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix.
id: OMP:0000295
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: underwound DNA

Axiom
annotated target: A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix.
database_cross_reference: ISBN:9781613441138
annotated property: definition
annotated source: presence of negative supercoiling

presence of positive supercoiling
type: Class
subclass of: DNA supercoiling phenotype
creation date: 2011-07-21T04:48:22Z
definition: A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix.
id: OMP:0000296
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: overwound DNA

Axiom
annotated target: A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix.
database_cross_reference: ISBN:9781613441138
annotated property: definition
annotated source: presence of positive supercoiling

decreased fraction of cells with one nucleoid
type: Class
subclass of: altered fraction of cells with one nucleoid
creation date: 2020-07-23T12:50:57Z
id: OMP:0000297
has_obo_namespace: microbial_phenotype
created by: siegele

increased fraction of cells with one nucleoid
type: Class
subclass of: altered fraction of cells with one nucleoid
creation date: 2020-07-23T12:50:57Z
id: OMP:0000298
has_obo_namespace: microbial_phenotype
created by: siegele

galactose-1-phosphate uridyl transferase activity
type: Class
creation date: 2011-07-21T05:12:43Z
definition: An enzymatic activity phenotype where galactose-1-phosphate uridyl transferase activity is present.
id: OMP:0000299
comment: This term was obsoleted in response to the decision to not have terms for individual enzyme activities unless those activities are commonly used for identification or classification.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

altered fraction of cells with two nucleoids
type: Class
subclass of: nucleoid number phenotype
creation date: 2020-07-23T12:52:56Z
id: OMP:0000300
has_obo_namespace: microbial_phenotype
created by: siegele

decreased fraction of cells with two nucleoids
type: Class
subclass of: altered fraction of cells with two nucleoids
creation date: 2020-07-23T12:53:45Z
id: OMP:0000301
has_obo_namespace: microbial_phenotype
created by: siegele

increased fraction of cells with two nucleoids
type: Class
subclass of: altered fraction of cells with two nucleoids
creation date: 2020-07-23T12:53:45Z
id: OMP:0000302
has_obo_namespace: microbial_phenotype
created by: siegele

altered correlation between nucleoid and cell constriction during cell division
type: Class
subclass of: altered nucleoid constriction during cell division
creation date: 2020-07-23T14:15:02Z
id: OMP:0000303
has_obo_namespace: microbial_phenotype
created by: siegele

increased substrate binding
type: Class
creation date: 2011-07-21T05:18:58Z
definition: A substrate binding phenotype where a protein has increased affinity for a substrate.
id: OMP:0000304
comment: This term was obsoleted in response to the decision that Kd measurements are too granular a phenotype for OMP, at least at this time. The issue can be reconsidered if a need for such terms arises in the future.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

decreased correlation between nucleoid and cell constriction during cell division
type: Class
subclass of: altered correlation between nucleoid and cell constriction during cell division
creation date: 2020-07-23T14:16:06Z
id: OMP:0000305
has_obo_namespace: microbial_phenotype
created by: siegele

macromolecular biosynthesis phenotype
type: Class
subclass of: biosynthetic phenotype
creation date: 2011-07-21T05:44:45Z
definition: A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
id: OMP:0000306
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
database_cross_reference: GO:0009059
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: macromolecular biosynthesis phenotype

DNA replication phenotype
type: Class
equivalent class: Class
  intersection of: cell cycle phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: cell cycle DNA replication
subclass of: genetic material phenotype
subclass of: macromolecular biosynthesis phenotype
subclass of: cell cycle phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: cell cycle DNA replication
creation date: 2011-07-21T05:45:47Z
definition: A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle.
database_cross_reference: GO:0044786
id: OMP:0000307
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

cell cycle DNA replication
type: Axiom
annotated target: GO:0044786
annotated source: DNA replication phenotype
annotated property: database_cross_reference

Axiom
annotated target: A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: DNA replication phenotype

over-initiation of DNA replication
type: Class
subclass of: altered DNA replication
creation date: 2011-07-21T05:46:05Z
definition: A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control.
id: OMP:0000308
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: over-initiation of DNA replication

biosynthetic phenotype
type: Class
subclass of: metabolic phenotype
creation date: 2011-07-21T05:47:06Z
definition: A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
has_exact_synonym: Biosynthesis
id: OMP:0000309
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
database_cross_reference: GO:0009058
annotated property: definition
annotated source: biosynthetic phenotype

small molecule biosynthesis phenotype
type: Class
subclass of: biosynthetic phenotype
creation date: 2011-07-21T05:49:51Z
definition: A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule.
id: OMP:0000310
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: small molecule biosynthesis phenotype

amino acid biosynthesis phenotype
type: Class
subclass of: small molecule biosynthesis phenotype
creation date: 2011-07-21T05:50:25Z
definition: A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur.
id: OMP:0000311
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: amino acid biosynthesis phenotype

locomotion phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: locomotion
subclass of: biological process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: locomotion
creation date: 2012-04-05T11:43:53Z
definition: A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
database_cross_reference: GO:0040011
id: OMP:0000312
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another.
database_cross_reference: GO:0040011
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: locomotion phenotype

locomotion
type: Axiom
annotated target: GO:0040011
annotated source: locomotion phenotype
annotated property: database_cross_reference

increased correlation between nucleoid and cell constriction during cell division
type: Class
subclass of: altered correlation between nucleoid and cell constriction during cell division
creation date: 2020-07-23T14:16:06Z
id: OMP:0000313
has_obo_namespace: microbial_phenotype
created by: siegele

altered degree of nucleoid constriction at the onset of cell constriction
type: Class
subclass of: altered nucleoid constriction during cell division
creation date: 2020-07-23T14:18:50Z
id: OMP:0000314
comment: This is a population average.
has_obo_namespace: microbial_phenotype
created by: siegele

decreased degree of nucleoid constriction at the onset of cell constriction
type: Class
subclass of: altered degree of nucleoid constriction at the onset of cell constriction
creation date: 2020-07-23T14:19:22Z
id: OMP:0000315
has_obo_namespace: microbial_phenotype
created by: siegele

increased degree of nucleoid constriction at the onset of cell constriction
type: Class
subclass of: altered degree of nucleoid constriction at the onset of cell constriction
creation date: 2020-07-23T14:19:22Z
id: OMP:0000316
has_obo_namespace: microbial_phenotype
created by: siegele

cell diameter phenotype
type: Class
subclass of: cell size phenotype
creation date: 2020-11-18T10:05:19Z
id: OMP:0000317
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell length variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T17:23:35Z
id: OMP:0000318
has_obo_namespace: microbial_phenotype
created by: siegele

cell area phenotype
type: Class
subclass of: cell size phenotype
creation date: 2020-11-26T13:14:47Z
id: OMP:0000319
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell diameter variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T17:25:52Z
id: OMP:0000320
has_obo_namespace: microbial_phenotype
created by: siegele

macrolide resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2012-11-02T01:51:04Z
definition: An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties.
database_cross_reference: CHEBI:25105
has_narrow_synonym: FK506
id: OMP:0000321
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: amphotericin B resistance phenotype
has_narrow_synonym: azithromycin resistance phenotype
has_narrow_synonym: bafilomycin A1 resistance phenotype
has_narrow_synonym: brasilinolide A resistance phenotype
has_narrow_synonym: brefeldin A resistance phenotype
has_narrow_synonym: carvomycin A resistance phenotype
has_narrow_synonym: clarithromycin resistance phenotype
has_narrow_synonym: dirithromycin resistance phenotype
has_narrow_synonym: erythromycin resistance phenotype
has_narrow_synonym: josamycin resistance phenotype
has_narrow_synonym: latrunculin B resistance phenotype
has_related_synonym: macrolide sensitivity phenotype
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_broad_synonym: polyketide resistance phenotype
has_related_synonym: rapamycin resistance phenotype
has_narrow_synonym: roxithromycin resistance phenotype
has_narrow_synonym: spiramycin resistance phenotype
has_narrow_synonym: telithromycin resistance phenotype
has_narrow_synonym: troleandomycin resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:26188
annotated target: polyketide resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_broad_synonym

Axiom
database_cross_reference: CHEBI:2682
annotated target: amphotericin B resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBi:3732
annotated target: clarithromycin resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:48080
annotated target: brefeldin A resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:2955
annotated target: azithromycin resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:49703
annotated target: latrunculin B resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--that is linked to one or more sugars and that have antimicrobial properties.
database_cross_reference: CHEBI:25106
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: macrolide resistance phenotype

Axiom
database_cross_reference: CHEBI:9168
annotated target: rapamycin resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_related_synonym

Axiom
database_cross_reference: CHEBI:474014
annotated target: dirithromycin resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:65514
annotated target: brasilinolide A resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:48844
annotated target: roxithromycin resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:31739
annotated target: josamycin resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

macrolide antibiotic
type: Axiom
annotated target: CHEBI:25105
annotated source: macrolide resistance phenotype
annotated property: database_cross_reference

Axiom
database_cross_reference: CHEBI:22689
annotated target: bafilomycin A1 resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:25105
annotated target: erythromycin resistance phenotype
annotated source: macrolide resistance phenotype
annotated property: has_narrow_synonym

cell length phenotype
type: Class
subclass of: cell size phenotype
creation date: 2020-11-26T13:14:47Z
id: OMP:0000322
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell area variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T17:35:24Z
id: OMP:0000323
has_obo_namespace: microbial_phenotype
created by: siegele

cell perimeter length phenotype
type: Class
subclass of: cell size phenotype
creation date: 2020-11-26T13:14:47Z
id: OMP:0000324
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell volume variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T17:44:34Z
id: OMP:0000325
has_obo_namespace: microbial_phenotype
created by: siegele

cell surface area phenotype
type: Class
subclass of: cell size phenotype
creation date: 2020-11-26T13:14:47Z
id: OMP:0000326
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell surface area variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T17:50:29Z
id: OMP:0000327
has_obo_namespace: microbial_phenotype
created by: siegele

cell volume phenotype
type: Class
subclass of: cell size phenotype
creation date: 2020-11-26T13:14:47Z
id: OMP:0000328
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell perimeter length variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T19:07:06Z
id: OMP:0000329
has_obo_namespace: microbial_phenotype
created by: siegele

cell surface area-to-volume ratio phenotype
type: Class
subclass of: cell size phenotype
creation date: 2020-11-26T13:14:47Z
id: OMP:0000330
has_obo_namespace: microbial_phenotype
created by: siegele

aminopyrimidine resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2012-11-02T02:02:58Z
has_narrow_synonym: 5-flucytosine resistance phenotype
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds.
id: OMP:0000331
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: aminopyrimidine sensitivity phenotype
has_broad_synonym: antifolate resistance phenotype
has_narrow_synonym: diaveridine resistance phenotype
has_narrow_synonym: iclaprim resistance phenotype
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_narrow_synonym: piritrexim resistance phenotype
has_narrow_synonym: pyrimethamine resistance phenotype
has_narrow_synonym: trimethoprim resistance phenotype
has_narrow_synonym: trimetrexate resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:73913
annotated target: antifolate resistance phenotype
annotated source: aminopyrimidine resistance phenotype
annotated property: has_broad_synonym

Axiom
database_cross_reference: CHEBI:8673
annotated target: pyrimethamine resistance phenotype
annotated source: aminopyrimidine resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: 5-flucytosine resistance phenotype
database_cross_reference: CHEBI:5100
annotated source: aminopyrimidine resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:123115
annotated target: diaveridine resistance phenotype
annotated source: aminopyrimidine resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds.
database_cross_reference: CHEBI:38338
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: aminopyrimidine resistance phenotype

Axiom
database_cross_reference: CID:5583
annotated target: trimetrexate resistance phenotype
annotated source: aminopyrimidine resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:131724
annotated target: iclaprim resistance phenotype
annotated source: aminopyrimidine resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:45924
annotated target: trimethoprim resistance phenotype
annotated source: aminopyrimidine resistance phenotype
annotated property: has_narrow_synonym

presence of cell surface area-to-volume ratio variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T19:11:25Z
id: OMP:0000332
has_obo_namespace: microbial_phenotype
created by: siegele

cell circularity phenotype
type: Class
subclass of: cell shape phenotype
creation date: 2020-11-27T16:31:01Z
definition: 4 pi area/(perimeter)^2 or 2 pi area/(perimeter)^2? defined differently in two places in paper
id: OMP:0000333
has_obo_namespace: microbial_phenotype
created by: siegele

increased resistance to aminopyrimidine
type: Class
subclass of: altered aminopyrimidine resistance
creation date: 2012-11-02T02:04:38Z
definition: An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control.
id: OMP:0000334
has_related_synonym: decreased sensitivity to antifolates
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to aminopyrimidine

decreased resistance to aminopyrimidine
type: Class
subclass of: altered aminopyrimidine resistance
creation date: 2012-11-02T02:04:58Z
definition: An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control.
id: OMP:0000335
has_related_synonym: increased sensitivity to aminopyrimidine
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to aminopyrimidine

beta-lactam resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2012-11-02T02:06:13Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure.
database_cross_reference: CHEBI:27933
id: OMP:0000336
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: amoxicillin resistance phenotype
has_narrow_synonym: ampicillin resistance phenotype
has_narrow_synonym: aztreonam resistance phenotype
has_related_synonym: beta-lactam sensitivity phenotype
has_narrow_synonym: carbapenams resistance phenotype
has_narrow_synonym: carbenicillin resistance phenotype
has_narrow_synonym: cefaclor resistance phenotype
has_narrow_synonym: cefoxitin resistance phenotype
has_narrow_synonym: cefsulodin resistance phenotype
has_narrow_synonym: ceftazidime resistance phenotype
has_narrow_synonym: cephalosporins resistance phenotype
has_narrow_synonym: cephaloxporin resistance phenotype
has_narrow_synonym: cephamycin resistance phenotype
created by: mchibucos
has_related_synonym: mecillinam resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: monobactams resistance phenotype
has_narrow_synonym: oxacillin resistance phenotype
has_narrow_synonym: penicillin resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:2676
annotated target: amoxicillin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:55429
annotated target: cephamycin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:209807
annotated target: cefoxitin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure.
database_cross_reference: CHEBI:35627
database_cross_reference: OMP:MCC
annotated property: definition
annotated source: beta-lactam resistance phenotype

Axiom
database_cross_reference: CHEBI:7809
annotated target: oxacillin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:3508
annotated target: ceftazidime resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:3507
annotated target: cefsulodin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

beta-lactam antibiotic
type: Axiom
annotated target: CHEBI:27933
annotated source: beta-lactam resistance phenotype
annotated property: database_cross_reference

Axiom
database_cross_reference: CHEBI:64510
annotated target: carbapenams resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:161680
annotated target: aztreonam resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:28971
annotated target: ampicillin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:51208
annotated target: mecillinam resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_related_synonym

Axiom
database_cross_reference: CHEBI:51356
annotated target: penicillin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:3478
annotated target: cefaclor resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:50695
annotated target: monobactams resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:3393
annotated target: carbenicillin resistance phenotype
annotated source: beta-lactam resistance phenotype
annotated property: has_narrow_synonym

presence of cell circularity variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T19:23:30Z
id: OMP:0000337
has_obo_namespace: microbial_phenotype
created by: siegele

cell aspect ratio phenotype
type: Class
subclass of: cell shape phenotype
creation date: 2020-11-27T19:14:47Z
id: OMP:0000338
definition: cell aspect ratio (diameter/length)
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell aspect ratio variability
type: Class
subclass of: presence of cell size variability within a cell population
creation date: 2020-07-26T19:54:28Z
id: OMP:0000339
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell division ratio variability
type: Class
subclass of: cell population phenotype
creation date: 2020-07-26T19:58:18Z
id: OMP:0000340
has_obo_namespace: microbial_phenotype
created by: siegele

cell shape variability phenotype
type: Class
subclass of: cell morphology variability
creation date: 2020-11-27T19:18:22Z
definition: A cell population phenotype where the trait is variability in cell shape within a microbial cell population.
id: OMP:0000341
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population phenotype where the trait is variability in cell shape within a microbial cell population.
database_cross_reference: OMP:das
annotated property: definition
annotated source: cell shape variability phenotype

presence of nucleoid area variability
type: Class
subclass of: cell population phenotype
creation date: 2020-07-27T16:05:18Z
id: OMP:0000342
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell shape variability phenotype
type: Class
subclass of: cell shape variability phenotype
creation date: 2020-11-27T19:21:14Z
definition: A cell population phenotype where variability in cell shape is altered relative to a designated control.
id: OMP:0000343
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population phenotype where variability in cell shape is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell shape variability phenotype

nucleoid area phenotype
type: Class
subclass of: nucleoid phenotype
creation date: 2020-11-27T19:47:09Z
id: OMP:0000344
has_obo_namespace: microbial_phenotype
created by: siegele

cell population growth yield phenotype
type: Class
subclass of: cell population growth phenotype
creation date: 2020-11-27T20:14:46Z
id: OMP:0000345
has_obo_namespace: microbial_phenotype
created by: siegele

nucleoid constriction during cell division phenotype
type: Class
subclass of: nucleoid phenotype
creation date: 2020-11-29T12:13:41Z
id: OMP:0000346
has_obo_namespace: microbial_phenotype
created by: siegele

altered nucleoid constriction during cell division
type: Class
subclass of: altered cell population phenotype
subclass of: nucleoid constriction during cell division phenotype
creation date: 2020-11-29T12:22:10Z
id: OMP:0000347
comment: This is a cell population average.
has_obo_namespace: microbial_phenotype
created by: siegele

correlation between nucleoid and cell constriction phenotype
type: Class
subclass of: nucleoid constriction during cell division phenotype
creation date: 2020-11-29T12:40:18Z
id: OMP:0000348
has_obo_namespace: microbial_phenotype
created by: siegele

cell division during cell population growth phenotype
type: Class
subclass of: cell population growth phenotype
creation date: 2020-11-29T13:03:32Z
id: OMP:0000349
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell division during cell population growth
type: Class
subclass of: cell division during cell population growth phenotype
subclass of: altered cell population growth
creation date: 2020-11-29T13:09:01Z
id: OMP:0000350
has_obo_namespace: microbial_phenotype
definition: population growth phenotype
created by: siegele

altered nucleoid number phenotype
type: Class
subclass of: nucleoid number phenotype
creation date: 2020-11-29T13:20:35Z
id: OMP:0000351
has_obo_namespace: microbial_phenotype
created by: siegele

timing of cell constriction phenotype
type: Class
subclass of: cell division during cell population growth phenotype
creation date: 2020-11-29T13:54:26Z
id: OMP:0000352
has_obo_namespace: microbial_phenotype
created by: siegele

timing of nucleoid separation phenotype
type: Class
subclass of: cell division during cell population growth phenotype
creation date: 2020-11-29T13:55:15Z
id: OMP:0000353
has_obo_namespace: microbial_phenotype
created by: siegele

altered timing of cell constriction
type: Class
subclass of: timing of cell constriction phenotype
creation date: 2020-11-29T14:02:10Z
id: OMP:0000354
has_obo_namespace: microbial_phenotype
created by: siegele

altered timing of nucleoid separation
type: Class
subclass of: timing of nucleoid separation phenotype
creation date: 2020-11-29T14:03:05Z
id: OMP:0000355
has_obo_namespace: microbial_phenotype
created by: siegele

decreased relative timing of cell constriction
type: Class
subclass of: altered timing of cell constriction
creation date: 2020-11-29T14:13:36Z
id: OMP:0000356
has_obo_namespace: microbial_phenotype
created by: siegele

increased relative timing of cell constriction
type: Class
subclass of: altered timing of cell constriction
creation date: 2020-11-29T14:13:36Z
id: OMP:0000357
has_obo_namespace: microbial_phenotype
created by: siegele

cell length variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:19:27Z
id: OMP:0000358
has_obo_namespace: microbial_phenotype
created by: siegele

cell diameter variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:20:53Z
id: OMP:0000359
has_obo_namespace: microbial_phenotype
created by: siegele

cell area variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:21:45Z
id: OMP:0000360
has_obo_namespace: microbial_phenotype
created by: siegele

cell volume variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:22:39Z
id: OMP:0000361
has_obo_namespace: microbial_phenotype
created by: siegele

cell surface area variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:24:11Z
id: OMP:0000362
has_obo_namespace: microbial_phenotype
created by: siegele

cell perimeter length variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:24:52Z
id: OMP:0000363
has_obo_namespace: microbial_phenotype
created by: siegele

cell surface area-to-volume ratio variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:25:30Z
id: OMP:0000364
has_obo_namespace: microbial_phenotype
created by: siegele

cell circularity variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:26:57Z
id: OMP:0000365
has_obo_namespace: microbial_phenotype
created by: siegele

cell aspect ratio variability phenotype
type: Class
subclass of: cell size variability
creation date: 2020-11-29T14:27:30Z
id: OMP:0000366
has_obo_namespace: microbial_phenotype
created by: siegele

nucleoid area variability phenotype
type: Class
subclass of: cell morphology variability
creation date: 2020-11-29T14:30:57Z
id: OMP:0000367
has_obo_namespace: microbial_phenotype
created by: siegele

cell division ratio variability phenotype
type: Class
subclass of: cell population growth phenotype
creation date: 2020-11-29T14:33:05Z
id: OMP:0000368
has_obo_namespace: microbial_phenotype
created by: siegele

internalization by macrophage phenotype
type: Class
subclass of: survival in macrophage phenotype
creation date: 2020-12-01T21:00:29Z
id: OMP:0000369
has_obo_namespace: microbial_phenotype
created by: siegele

presence of internalization by macrophage
type: Class
subclass of: internalization by macrophage phenotype
creation date: 2020-12-01T21:06:40Z
id: OMP:0000370
has_obo_namespace: microbial_phenotype
created by: siegele

absence of internalization by macrophage
type: Class
subclass of: internalization by macrophage phenotype
creation date: 2020-12-01T21:06:40Z
id: OMP:0000371
has_obo_namespace: microbial_phenotype
created by: siegele

altered internalization by macrophage
type: Class
subclass of: internalization by macrophage phenotype
creation date: 2020-12-01T21:06:40Z
id: OMP:0000372
has_obo_namespace: microbial_phenotype
created by: siegele

increased internalization by macrophage
type: Class
subclass of: altered internalization by macrophage
creation date: 2020-12-01T21:06:40Z
id: OMP:0000373
has_obo_namespace: microbial_phenotype
created by: siegele

decreased internalization by macrophage
type: Class
subclass of: altered internalization by macrophage
creation date: 2020-12-01T21:06:40Z
id: OMP:0000374
has_obo_namespace: microbial_phenotype
created by: siegele

abolished internalization by macrophage
type: Class
subclass of: decreased internalization by macrophage
creation date: 2020-12-01T21:06:40Z
id: OMP:0000375
has_obo_namespace: microbial_phenotype
created by: siegele

acid tolerance response phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2020-12-27T00:51:04Z
definition: A response to stress phenotype related to how exposure of a microbial cell or cells to a small decrease in pH affects
id: OMP:0000376
has_obo_namespace: microbial_phenotype
created by: siegele

absence of acid tolerance response
type: Class
subclass of: acid tolerance response phenotype
creation date: 2020-12-27T00:52:03Z
id: OMP:0000377
has_obo_namespace: microbial_phenotype
created by: siegele

altered acid tolerance response
type: Class
subclass of: acid tolerance response phenotype
subclass of: altered response to stress phenotype
creation date: 2020-12-27T00:52:03Z
id: OMP:0000378
has_obo_namespace: microbial_phenotype
created by: siegele

presence of acid tolerance response
type: Class
subclass of: acid tolerance response phenotype
creation date: 2020-12-27T00:52:03Z
id: OMP:0000379
has_obo_namespace: microbial_phenotype
created by: siegele

decreased acid tolerance response
type: Class
subclass of: altered acid tolerance response
creation date: 2020-12-27T00:53:04Z
id: OMP:0000380
has_obo_namespace: microbial_phenotype
created by: siegele

increased acid tolerance response
type: Class
subclass of: altered acid tolerance response
creation date: 2020-12-27T00:53:04Z
id: OMP:0000381
has_obo_namespace: microbial_phenotype
created by: siegele

abolished acid tolerance response
type: Class
subclass of: absence of acid tolerance response
subclass of: decreased acid tolerance response
creation date: 2020-12-27T00:53:11Z
id: OMP:0000382
has_obo_namespace: microbial_phenotype
created by: siegele

cell-cell self recognition phenotype
type: Class
subclass of: biological process phenotype
creation date: 2021-03-29T16:47:35Z
has_narrow_synonym: <new synonym>
definition: A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self.
id: OMP:0000383
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A biological process phenotype concerning whether cells of one strain of a microbial taxon are able to discriminate between cells of the same strain and cells that belong to a different strain of the same taxon, i.e. the ability to discriminate between self and non-self.
database_cross_reference: OMP:das
database_cross_reference: PMID:18621670
annotated property: definition
annotated source: cell-cell self recognition phenotype

absence of cell-cell self recognition
type: Class
subclass of: cell-cell self recognition phenotype
creation date: 2021-03-29T16:49:55Z
id: OMP:0000384
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell-cell self recognition
type: Class
subclass of: cell-cell self recognition phenotype
creation date: 2021-03-29T16:49:55Z
definition: A cell-cell self-recognition phenotype where cells of a microbial strain recognizes self and different populations of the same strain will merge when grown on solid medium.
id: OMP:0000385
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell-cell self recognition
type: Class
subclass of: cell-cell self recognition phenotype
creation date: 2021-03-29T16:49:55Z
id: OMP:0000386
has_narrow_synonym: aberrant cell-cell self recognition
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: DDPHENO:0000122
annotated target: aberrant cell-cell self recognition
annotated source: altered cell-cell self recognition
annotated property: has_narrow_synonym

increased cell-cell self recognition
type: Class
subclass of: altered cell-cell self recognition
creation date: 2021-03-29T16:52:06Z
id: OMP:0000387
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell-cell self recognition
type: Class
subclass of: altered cell-cell self recognition
creation date: 2021-03-29T16:52:06Z
id: OMP:0000388
has_obo_namespace: microbial_phenotype
created by: siegele

abolished cell-cell self recognition
type: Class
subclass of: decreased cell-cell self recognition
creation date: 2021-03-29T16:52:06Z
id: OMP:0000389
has_obo_namespace: microbial_phenotype
created by: siegele

presence of transcription of gene or operon
type: Class
subclass of: transcription phenotype
creation date: 2021-04-13T14:45:21Z
id: OMP:0000390
has_obo_namespace: microbial_phenotype
created by: siegele

absence of transcription of gene or operon
type: Class
subclass of: transcription phenotype
creation date: 2021-04-13T14:46:06Z
id: OMP:0000391
has_obo_namespace: microbial_phenotype
created by: siegele

resistant to aminopyrimidine
type: Class
subclass of: aminopyrimidine resistance phenotype
creation date: 2012-11-04T02:52:01Z
definition: An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds.
id: OMP:0000435
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to aminopyrimidine

not resistant to aminopyrimidine
type: Class
subclass of: aminopyrimidine resistance phenotype
creation date: 2012-11-04T02:52:18Z
definition: An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds.
id: OMP:0000436
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_related_synonym: sensitivity to aminopyrimidine

Axiom
annotated target: An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to aminopyrimidine

resistant to ampicillin
type: Class
creation date: 2012-11-04T02:52:48Z
definition: An antimicrobial compound resistance phenotype where a cell or cells are resistant to ampicillin.
id: OMP:0000437
term replaced by: OMP:0006047
comment: This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, when possible, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into the annotation extension column. In cases where a natural grouping doesn't exist, the user should use "OMP:0007876 resistant to an antimicrobial agent" and put the CHEBI ID (or other identifier) into the annotation extension column.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

resistant to penicillin
type: Class
creation date: 2012-11-04T02:55:41Z
definition: An antimicrobial compound resistance phenotype where a cell or cells are resistant to penicillin.
id: OMP:0000445
term replaced by: OMP:0006047
comment: This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into column 16.
created by: mchibucos
has_obo_namespace: microbial_phenotype
deprecated: true

trace element utilization phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2013-05-23T01:35:26Z
definition: A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts.
id: OMP:0000450
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_exact_synonym: micronutrient utilization
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: trace element utilization phenotype

heme utilization phenotype
type: Class
subclass of: iron source utilization phenotype
creation date: 2013-05-23T01:37:06Z
definition: An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring.
id: OMP:0000451
has_exact_synonym: haem
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An iron source utilization phenotype where the nutrient being utilized is heme, which is a compound of iron complexed in a porphyrin (tetrapyrrole) ring.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: heme utilization phenotype

increased heme utilization
type: Class
subclass of: altered heme utilization phenotype
creation date: 2013-05-23T01:37:51Z
definition: An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control.
id: OMP:0000452
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased heme utilization

decreased heme utilization
type: Class
subclass of: altered heme utilization phenotype
creation date: 2013-05-23T01:39:39Z
definition: An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control.
id: OMP:0000453
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased heme utilization

absence of heme utilization
type: Class
subclass of: heme utilization phenotype
creation date: 2013-05-23T01:40:40Z
definition: A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron.
id: OMP:0000454
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of heme utilization

alkaloid chemical resistance phenotype
type: Class
subclass of: chemical resistance phenotype
creation date: 2013-05-23T01:53:57Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure.
id: OMP:0000455
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: alkaloid sensitivity phenotype
has_narrow_synonym: caffeine resistance phenotype
created by: mchibucos
has_obo_namespace: microbial_phenotype
has_narrow_synonym: theophylline resistance phenotype

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure.
database_cross_reference: CHEBI:22315
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: alkaloid chemical resistance phenotype

Axiom
database_cross_reference: CHEBI:28177
annotated target: theophylline resistance phenotype
annotated source: alkaloid chemical resistance phenotype
annotated property: has_narrow_synonym

caffeine resistance phenotype
type: Class
subclass of: alkaloid chemical resistance phenotype
creation date: 2013-05-23T01:54:51Z
definition: An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7.
id: OMP:0000456
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: caffeine sensitivity phenotype
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An alkaloid resistance phenotype that is related to resistance or sensitivity to caffeine, which is a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7.
database_cross_reference: CHEBI:27732
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: caffeine resistance phenotype

resistant to caffeine
type: Class
subclass of: caffeine resistance phenotype
creation date: 2013-05-23T01:55:13Z
definition: A caffeine resistance phenotype where an organism or cell is resistant to caffeine.
id: OMP:0000457
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A caffeine resistance phenotype where an organism or cell is resistant to caffeine.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: resistant to caffeine

not resistant to caffeine
type: Class
subclass of: caffeine resistance phenotype
creation date: 2013-05-23T01:55:34Z
definition: A caffeine resistance phenotype where an organism or cell is sensitive to caffeine.
id: OMP:0000458
has_related_synonym: caffeine sensitivity
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A caffeine resistance phenotype where an organism or cell is sensitive to caffeine.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: not resistant to caffeine

increased caffeine resistance
type: Class
subclass of: altered caffeine resistance
creation date: 2013-05-23T01:58:11Z
definition: An altered caffeine resistance phenotype where resistance is increased relative to a designated control.
id: OMP:0000459
has_related_synonym: decreased caffeine sensitivity
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered caffeine resistance phenotype where resistance is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased caffeine resistance

decreased caffeine resistance
type: Class
subclass of: altered caffeine resistance
creation date: 2013-05-23T01:58:55Z
definition: An altered caffeine resistance phenotype where resistance is decreased relative to a designated control.
id: OMP:0000460
has_related_synonym: increased caffeine sensitivity
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered caffeine resistance phenotype where resistance is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased caffeine resistance

outer membrane phenotype
type: Class
subclass of: cell envelope morphology phenotype
creation date: 2013-08-22T01:43:06Z
definition: A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall.
id: OMP:0000461
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: outer membrane phenotype

presence of an outer membrane
type: Class
subclass of: outer membrane phenotype
creation date: 2013-08-22T01:47:25Z
definition: An outer membrane phenotype where a cell or cells possess an outer membrane.
has_narrow_synonym: Diderm
has_narrow_synonym: Gram negative
id: OMP:0000462
has_obo_namespace: microbial_phenotype
has_related_synonym: mycolate outer membrane
created by: siegele

Axiom
annotated target: An outer membrane phenotype where a cell or cells possess an outer membrane.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of an outer membrane

increased number of pili
type: Class
subclass of: altered pilus phenotype
creation date: 2013-08-22T01:48:57Z
definition: A pilus phenotype where there is an increased number of pili per cell relative to a designated control.
id: OMP:0000463
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A pilus phenotype where there is an increased number of pili per cell relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased number of pili

absence of an outer membrane
type: Class
subclass of: outer membrane phenotype
creation date: 2013-08-22T01:53:29Z
definition: An outer membrane phenotype where a cell or cells lack an outer membrane.
id: OMP:0000464
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An outer membrane phenotype where a cell or cells lack an outer membrane.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of an outer membrane

decreased aerotaxis
type: Class
equivalent class: Class
  intersection of: altered aerotaxis
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered aerotaxis
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2012-11-02T01:20:31Z
definition: An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control.
id: OMP:0000500
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased aerotaxis

increased aerotaxis
type: Class
subclass of: altered aerotaxis
creation date: 2012-11-02T01:21:21Z
definition: An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control.
id: OMP:0000502
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased aerotaxis

decreased chemotaxis
type: Class
subclass of: altered chemotaxis
creation date: 2012-11-02T01:22:28Z
definition: An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control.
id: OMP:0000503
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased chemotaxis

increased chemotaxis
type: Class
subclass of: altered chemotaxis
creation date: 2012-11-02T01:23:12Z
definition: An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control.
id: OMP:0000505
created by: mchibucos
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased chemotaxis

Increased negative supercoiling
type: Class
subclass of: altered DNA supercoiling
creation date: 2013-08-22T05:57:07Z
definition: An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control.
id: OMP:0001001
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: Increased negative supercoiling

decreased negative supercoiling
type: Class
subclass of: altered DNA supercoiling
creation date: 2013-08-22T05:57:56Z
definition: An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control.
id: OMP:0001002
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased negative supercoiling

phospholipase activity phenotype
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-01-26T15:01:05Z
definition: An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid.
database_cross_reference: GO:0004620
created by: Jesus
id: OMP:0005000
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

phospholipase activity
type: Axiom
annotated target: GO:0004620
annotated source: phospholipase activity phenotype
annotated property: database_cross_reference

Axiom
annotated target: An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: phospholipase activity phenotype

altered caffeine resistance
type: Class
subclass of: caffeine resistance phenotype
subclass of: altered alkaloid resistance
creation date: 2014-07-23T12:18:08Z
definition: A caffeine resistance phenotype that is altered relative to a designated control.
id: OMP:0005001
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A caffeine resistance phenotype that is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered caffeine resistance

temperature effects on population growth phenotype
type: Class
subclass of: effect of non-nutrient environmental factors on population growth phenotype
creation date: 2013-09-03T01:06:05Z
definition: A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment.
id: OMP:0005002
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_narrow_synonym: temperature requirement for growth
created by: wmeza
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth range phenotype related to how growth of a microbial population is affected by the temperature of the environment.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: temperature effects on population growth phenotype

hyperthermophile
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2013-09-03T01:29:51Z
definition: A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C.
id: OMP:0005003
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype where optimal growth of a microbial population occurs between 85 C and 113 C.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: hyperthermophile

thermophile
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2013-09-03T01:36:26Z
definition: A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C.
id: OMP:0005004
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype where growth of a microbial population can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: thermophile

mesophile
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2013-09-04T13:24:06Z
definition: A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C.
id: OMP:0005005
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype where optimal growth of a microbial population occurs between 20 C and 45 C.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: mesophile

psychrotroph
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2013-09-04T13:38:56Z
definition: A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C.
id: OMP:0005006
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype where growth of a microbial population can occur between 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature for population growth is around 35 degrees C.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: psychrotroph

psychrophile
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2013-09-04T13:40:27Z
definition: A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower.
id: OMP:0005007
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype where growth of a microbial population can occur at 0 C and optimal growth occurs at temperatures of 15 C or lower.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: psychrophile

pH effects on population growth phenotype
type: Class
subclass of: effect of non-nutrient environmental factors on population growth phenotype
creation date: 2013-09-04T13:57:28Z
definition: A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment.
id: OMP:0005008
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth phenotype relating to how the rate and/or extent of growth of a microbial population is affected by the pH of the environment.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: pH effects on population growth phenotype

acidophile
type: Class
subclass of: pH effects on population growth phenotype
creation date: 2013-09-04T16:18:28Z
definition: A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5.
id: OMP:0005009
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 0 and 5.5.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: acidophile

neutrophile
type: Class
subclass of: pH effects on population growth phenotype
creation date: 2013-09-04T16:21:50Z
definition: A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0.
id: OMP:0005010
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 5.5 and 8.0.
database_cross_reference: ISBN:780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: neutrophile

alkaliphile
type: Class
subclass of: pH effects on population growth phenotype
creation date: 2013-09-04T16:24:24Z
definition: A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5.
id: OMP:0005011
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A population growth phenotype that applies to microorganisms whose optimal growth occurs between pH 8.0 to 11.5.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: alkaliphile

pressure effects on population growth phenotype
type: Class
subclass of: effect of non-nutrient environmental factors on population growth phenotype
creation date: 2013-09-09T11:42:28Z
definition: A population growth range phenotype related to how growth of a microbial population is affected by pressure.
id: OMP:0005012
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth range phenotype related to how growth of a microbial population is affected by pressure.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: pressure effects on population growth phenotype

solute and water activity effects on population growth phenotype
type: Class
subclass of: effect of non-nutrient environmental factors on population growth phenotype
creation date: 2013-09-09T11:43:45Z
definition: A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment.
id: OMP:0005013
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth range phenotype related to how growth of a microbial population is affected by the concentration of solutes (water activity) in the environment.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: solute and water activity effects on population growth phenotype

piezophilic growth
type: Class
subclass of: pressure effects on population growth phenotype
creation date: 2013-09-09T11:49:53Z
definition: A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure.
id: OMP:0005014
has_related_synonym: barophilic growth
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: piezophilic growth

Axiom
database_cross_reference: ISBN:9780073402406
annotated target: barophilic growth
annotated source: piezophilic growth
annotated property: has_related_synonym

osmotolerant growth
type: Class
subclass of: solute and water activity effects on population growth phenotype
creation date: 2013-09-09T13:05:24Z
definition: A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration.
id: OMP:0005015
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: osmotolerant growth

halophilic growth
type: Class
subclass of: solute and water activity effects on population growth phenotype
creation date: 2013-09-09T13:06:03Z
definition: A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M.
id: OMP:0005016
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: halophilic growth

SOS response phenotype
type: Class
subclass of: gene expression phenotype
creation date: 2013-09-18T18:35:30Z
definition: A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage.
has_related_synonym: DNA damage response
id: OMP:0005017
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage.
database_cross_reference: ISBN:9781615831838
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: SOS response phenotype

altered SOS response phenotype
type: Class
subclass of: SOS response phenotype
creation date: 2013-09-19T13:39:34Z
definition: An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control.
id: OMP:0005018
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered SOS response phenotype

absence of phospholipase activity
type: Class
subclass of: phospholipase activity phenotype
creation date: 2016-01-26T15:16:42Z
definition: A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity.
created by: Jesus
id: OMP:0005019
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of phospholipase activity

increased basal expression of the SOS response
type: Class
subclass of: altered basal expression of the SOS response
creation date: 2013-09-19T15:54:21Z
definition: An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control.
id: OMP:0005020
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased basal expression of the SOS response

decreased basal expression of the SOS response
type: Class
subclass of: altered basal expression of the SOS response
creation date: 2013-09-19T15:55:16Z
definition: An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control.
id: OMP:0005021
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased basal expression of the SOS response

absence of an SOS response
type: Class
subclass of: SOS response phenotype
creation date: 2013-09-19T16:25:09Z
definition: An SOS response phenotype where a cell or cells lack an SOS response.
id: OMP:0005022
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An SOS response phenotype where a cell or cells lack an SOS response.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of an SOS response

presence of an SOS response
type: Class
subclass of: SOS response phenotype
creation date: 2013-09-19T16:25:30Z
definition: An SOS response phenotype where a cell or cells exhibit an SOS response.
id: OMP:0005023
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An SOS response phenotype where a cell or cells exhibit an SOS response.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of an SOS response

increased induced expression of the SOS response
type: Class
subclass of: altered induced expression of the SOS response
creation date: 2013-09-20T13:01:05Z
definition: An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control.
id: OMP:0005024
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased induced expression of the SOS response

decreased induced expression of the SOS response
type: Class
subclass of: altered induced expression of the SOS response
creation date: 2013-09-20T13:26:46Z
definition: An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control.
id: OMP:0005025
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased induced expression of the SOS response

presence of phospholipase activity
type: Class
subclass of: phospholipase activity phenotype
creation date: 2016-01-26T15:17:15Z
definition: A phospholipase activity phenotype where an organism exhibits phospholipase activity.
created by: Jesus
id: OMP:0005026
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phospholipase activity phenotype where an organism exhibits phospholipase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of phospholipase activity

stress-induced mutagenesis phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2013-09-20T15:00:09Z
definition: A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress.
id: OMP:0005027
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype relating to the process or processes that give rise to mutations that occur after imposition of a non-lethal stress.
database_cross_reference: OMP:WAM
database_cross_reference: PMID:17917874
database_cross_reference: PMID:3045565
annotated property: definition
annotated source: stress-induced mutagenesis phenotype

altered phospholipase activity
type: Class
subclass of: phospholipase activity phenotype
subclass of: altered enzymatic activity
creation date: 2016-01-26T15:17:51Z
definition: A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control.
created by: Jesus
id: OMP:0005028
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered phospholipase activity

altered tetracycline resistance
type: Class
subclass of: tetracycline resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-23T17:05:20Z
definition: A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control.
id: OMP:0005029
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered tetracycline resistance

increased stress-induced mutagenesis
type: Class
subclass of: altered stress-induced mutagenesis
creation date: 2013-09-25T15:57:03Z
definition: An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control.
id: OMP:0005030
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased stress-induced mutagenesis

decreased stress-induced mutagenesis
type: Class
subclass of: altered stress-induced mutagenesis
creation date: 2013-09-25T15:57:46Z
definition: An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control.
id: OMP:0005031
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased stress-induced mutagenesis

presence of stress-induced mutagenesis
type: Class
subclass of: stress-induced mutagenesis phenotype
creation date: 2013-09-25T15:59:12Z
definition: A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis.
id: OMP:0005032
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of stress-induced mutagenesis

absence of stress-induced mutagenesis
type: Class
subclass of: stress-induced mutagenesis phenotype
creation date: 2013-09-25T18:20:22Z
definition: A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis.
id: OMP:0005033
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of stress-induced mutagenesis

altered quinolone resistance
type: Class
subclass of: quinolone resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-23T17:13:45Z
definition: A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control.
id: OMP:0005034
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered quinolone resistance

quick-stop DNA replication
type: Class
subclass of: altered DNA replication
creation date: 2013-10-15T17:51:12Z
definition: A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition.
id: OMP:0005035
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition.
database_cross_reference: OMP:JHU
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: quick-stop DNA replication

slow-stop DNA replication
type: Class
subclass of: altered DNA replication
creation date: 2013-10-15T17:51:40Z
definition: A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift.
id: OMP:0005036
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift.
database_cross_reference: OMP:JHU
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: slow-stop DNA replication

origin-independent replication
type: Class
subclass of: altered DNA replication
creation date: 2013-10-15T18:53:12Z
definition: A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication.
id: OMP:0005037
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: origin-independent replication

response to oxidative stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2013-10-15T18:59:38Z
id: OMP:0005038
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

response to freeze/thaw stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2013-10-15T18:59:52Z
definition: A stress response phenotype dealing with the response to cyclic freezing and melting.
id: OMP:0005039
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype dealing with the response to cyclic freezing and melting.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to freeze/thaw stress phenotype

response to acid pH stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2013-10-16T17:14:52Z
definition: A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5.
id: OMP:0005040
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to acid pH stress phenotype

response to alkaline pH stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2013-10-16T17:15:59Z
definition: A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5.
id: OMP:0005041
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to alkaline pH stress phenotype

homologous recombination phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2013-10-18T18:34:37Z
definition: A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA.
id: OMP:0005042
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA.
database_cross_reference: ISBN:9780471768654
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: homologous recombination phenotype

site-specific recombination phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2013-10-18T18:34:58Z
definition: A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA.
id: OMP:0005043
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA.
database_cross_reference: ISBN:9780471768654
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: site-specific recombination phenotype

altered mitotic recombination
type: Class
subclass of: mitotic recombination phenotype
creation date: 2014-07-24T13:27:41Z
definition: A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control.
id: OMP:0005044
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered mitotic recombination

mitotic recombination phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2013-10-18T18:38:05Z
definition: A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles.
id: OMP:0005045
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles.
database_cross_reference: ISBN:9780198529170
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: mitotic recombination phenotype

gene silencing phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: gene silencing
subclass of: genetic material phenotype
subclass of: biological process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: gene silencing
creation date: 2013-10-18T18:38:43Z
definition: A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation.
database_cross_reference: GO:0016458
id: OMP:0005046
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

gene silencing
type: Axiom
annotated target: GO:0016458
annotated source: gene silencing phenotype
annotated property: database_cross_reference

Axiom
annotated target: A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation.
database_cross_reference: GO:0016458
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: gene silencing phenotype

chromosome segregation phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: chromosome segregation
subclass of: genetic material phenotype
subclass of: biological process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: chromosome segregation
creation date: 2013-10-18T18:39:04Z
definition: A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
database_cross_reference: GO::0007059
id: OMP:0005047
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
database_cross_reference: GO:0007059
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: chromosome segregation phenotype

chromosome segregation
type: Axiom
annotated target: GO::0007059
annotated source: chromosome segregation phenotype
annotated property: database_cross_reference

mutation frequency phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2013-10-18T18:39:27Z
definition: A genetic material phenotype dealing with the frequency of mutations.
id: OMP:0005048
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype dealing with the frequency of mutations.
database_cross_reference: ISBN:9780198529170
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: mutation frequency phenotype

increased frequency of homologous recombination
type: Class
subclass of: altered homologous recombination
creation date: 2013-10-23T19:46:15Z
definition: A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control.
id: OMP:0005049
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased frequency of homologous recombination

decreased frequency of homologous recombination
type: Class
subclass of: altered homologous recombination
creation date: 2013-10-24T12:52:41Z
definition: A homologous recombination phenotype where homologous recombination is decreased relative to a designated control.
id: OMP:0005050
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A homologous recombination phenotype where homologous recombination is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased frequency of homologous recombination

presence of homologous recombination
type: Class
subclass of: homologous recombination phenotype
creation date: 2013-10-25T12:21:41Z
definition: A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination.
id: OMP:0005051
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of homologous recombination

absence of homologous recombination
type: Class
subclass of: homologous recombination phenotype
creation date: 2013-10-25T12:22:04Z
definition: A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination.
id: OMP:0005052
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of homologous recombination

altered induced expression of the SOS response
type: Class
subclass of: altered SOS response phenotype
creation date: 2014-07-30T12:34:21Z
definition: An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control.
id: OMP:0005053
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered induced expression of the SOS response

altered basal expression of the SOS response
type: Class
subclass of: altered SOS response phenotype
creation date: 2014-07-30T12:58:59Z
definition: An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control.
id: OMP:0005054
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered basal expression of the SOS response

increased frequency of site-specific recombination
type: Class
subclass of: altered site-specific recombination
creation date: 2013-10-29T13:14:25Z
definition: A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control.
id: OMP:0005055
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased frequency of site-specific recombination

decreased frequency of site-specific recombination
type: Class
subclass of: altered site-specific recombination
creation date: 2013-10-29T13:15:06Z
definition: A site specific recombination phenotype where site specific recombination is decreased relative to a designated control.
id: OMP:0005056
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A site specific recombination phenotype where site specific recombination is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased frequency of site-specific recombination

absence of site-specific recombination
type: Class
subclass of: site-specific recombination phenotype
creation date: 2013-10-29T13:15:28Z
definition: A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination.
id: OMP:0005057
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of site-specific recombination

presence of site-specific recombination
type: Class
subclass of: site-specific recombination phenotype
creation date: 2013-10-29T13:20:16Z
definition: A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination.
id: OMP:0005058
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of site-specific recombination

transposable element transposition phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: transposition
subclass of: genetic material phenotype
subclass of: biological process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: transposition
creation date: 2013-10-30T18:35:34Z
definition: A genetic material phenotype dealing with DNA sequences that change positions within the genome.
database_cross_reference: APO:0000047
database_cross_reference: GO:0032196
id: OMP:0005059
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

transposable element transposition
type: Axiom
annotated target: APO:0000047
annotated source: transposable element transposition phenotype
annotated property: database_cross_reference

Axiom
annotated target: A genetic material phenotype dealing with DNA sequences that change positions within the genome.
database_cross_reference: ISBN:9780198529170
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: transposable element transposition phenotype

transposition
type: Axiom
annotated target: GO:0032196
annotated source: transposable element transposition phenotype
annotated property: database_cross_reference

decreased frequency of chromosome missegregation
type: Class
subclass of: altered chromosome segregation
creation date: 2013-11-04T18:09:09Z
definition: An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control.
id: OMP:0005060
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased frequency of chromosome missegregation

increased frequency of chromosome missegregation
type: Class
subclass of: altered chromosome segregation
creation date: 2013-11-04T18:09:38Z
definition: An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control.
id: OMP:0005061
has_narrow_synonym: increased aneuploidy
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased frequency of chromosome missegregation

increased phospholipase activity
type: Class
equivalent class: Class
  intersection of: altered phospholipase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered phospholipase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2016-01-26T15:18:34Z
definition: An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control.
created by: Jesus
id: OMP:0005062
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased phospholipase activity

decreased phospholipase activity
type: Class
equivalent class: Class
  intersection of: altered phospholipase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered phospholipase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2016-01-26T15:19:23Z
definition: An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control.
created by: Jesus
id: OMP:0005063
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased phospholipase activity

increased frequency of gene silencing
type: Class
subclass of: altered gene silencing
creation date: 2013-11-04T18:21:37Z
definition: An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control.
id: OMP:0005064
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased frequency of gene silencing

decreased frequency of gene silencing
type: Class
subclass of: altered gene silencing
creation date: 2013-11-04T18:21:56Z
definition: An gene silencing phenotype where gene silencing is decreased relative to a designated control.
id: OMP:0005065
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An gene silencing phenotype where gene silencing is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased frequency of gene silencing

absence of gene silencing
type: Class
subclass of: gene silencing phenotype
creation date: 2013-11-04T18:33:14Z
definition: A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing.
id: OMP:0005066
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of gene silencing

presence of gene silencing
type: Class
subclass of: gene silencing phenotype
creation date: 2013-11-04T18:34:20Z
definition: A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing.
id: OMP:0005067
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of gene silencing

increased mutation frequency
type: Class
subclass of: altered mutation frequency
creation date: 2013-11-08T17:05:44Z
definition: An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control.
id: OMP:0005068
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased mutation frequency

decreased mutation frequency
type: Class
subclass of: altered mutation frequency
creation date: 2013-11-08T17:11:14Z
definition: An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control.
id: OMP:0005069
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased mutation frequency

increased mitotic recombination
type: Class
subclass of: altered mitotic recombination
creation date: 2013-11-08T17:11:59Z
definition: An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control.
id: OMP:0005070
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased mitotic recombination

decreased mitotic recombination
type: Class
subclass of: altered mitotic recombination
creation date: 2013-11-08T17:12:27Z
definition: An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control.
id: OMP:0005071
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased mitotic recombination

absence of mitotic recombination
type: Class
subclass of: mitotic recombination phenotype
creation date: 2013-11-08T17:35:56Z
definition: A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination.
id: OMP:0005072
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of mitotic recombination

presence of mitotic recombination
type: Class
subclass of: mitotic recombination phenotype
creation date: 2013-11-08T17:36:20Z
definition: A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination.
id: OMP:0005073
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of mitotic recombination

increased rate of transposable element transposition
type: Class
subclass of: altered transposable element transposition phenotype
creation date: 2013-11-11T13:41:50Z
definition: A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control.
id: OMP:0005074
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased rate of transposable element transposition

decreased rate of transposable element transposition
type: Class
subclass of: altered transposable element transposition phenotype
creation date: 2013-11-11T13:42:44Z
definition: A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control.
id: OMP:0005075
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased rate of transposable element transposition

increased resistance to acidic pH stress
type: Class
subclass of: altered resistance to acidic pH stress phenotype
creation date: 2013-11-15T18:09:55Z
definition: An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control.
id: OMP:0005076
has_related_synonym: decreased acidic pH sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to acidic pH stress

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased acidic pH sensitivity
annotated source: increased resistance to acidic pH stress
annotated property: has_related_synonym

decreased resistance to acidic pH stress
type: Class
subclass of: altered resistance to acidic pH stress phenotype
creation date: 2013-11-15T18:12:48Z
definition: An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control.
id: OMP:0005077
has_related_synonym: increased sensitivity to acid pH stress
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
database_cross_reference: OMP:WAM
annotated target: increased sensitivity to acid pH stress
annotated source: decreased resistance to acidic pH stress
annotated property: has_related_synonym

Axiom
annotated target: An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to acidic pH stress

increased resistance to alkaline pH stress
type: Class
subclass of: altered resistance to alkaline pH stress phenotype
creation date: 2013-11-15T18:14:08Z
definition: An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control.
id: OMP:0005078
has_related_synonym: decreased alkaline pH sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to alkaline pH stress

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased alkaline pH sensitivity
annotated source: increased resistance to alkaline pH stress
annotated property: has_related_synonym

decreased resistance to alkaline pH stress
type: Class
subclass of: altered resistance to alkaline pH stress phenotype
creation date: 2013-11-15T18:16:03Z
definition: An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control.
id: OMP:0005079
has_narrow_synonym: increased alkaline pH sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to alkaline pH stress

Axiom
database_cross_reference: OMP:WAM
annotated target: increased alkaline pH sensitivity
annotated source: decreased resistance to alkaline pH stress
annotated property: has_narrow_synonym

response to dessication stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2013-11-18T11:42:37Z
definition: A stress response phenotype dealing with the removal or immobilisation of water.
id: OMP:0005080
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype dealing with the removal or immobilisation of water.
database_cross_reference: ISBN:9780471138228
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to dessication stress phenotype

response to radiation stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2013-11-18T11:50:57Z
definition: A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths.
id: OMP:0005081
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_related_synonym: radiation resistance
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to radiation stress phenotype

response to thermotolerance stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2013-11-18T12:22:55Z
definition: A stress response phenotype dealing with the resistance response to normally lethal high temperature levels.
id: OMP:0005082
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype dealing with the resistance response to normally lethal high temperature levels.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to thermotolerance stress phenotype

response to ionizing radiation phenotype
type: Class
subclass of: response to radiation stress phenotype
creation date: 2013-11-22T15:55:45Z
definition: A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation.
id: OMP:0005083
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation.
database_cross_reference: ISBN:9780471387350
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to ionizing radiation phenotype

resistance to UV radiation phenotype
type: Class
subclass of: resistance to radiation stress phenotype
creation date: 2013-11-22T15:56:27Z
definition: A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm).
id: OMP:0005084
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth phenotype relating to the ability of a microbial population to grow when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm).
database_cross_reference: ISO:21348
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: resistance to UV radiation phenotype

resistance to gamma-ray radiation phenotype
type: Class
subclass of: resistance to radiation stress phenotype
creation date: 2013-11-22T16:04:42Z
definition: A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation.
id: OMP:0005085
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: resistance to gamma-ray radiation phenotype

resistance to x-ray radiation
type: Class
subclass of: resistance to radiation stress phenotype
creation date: 2013-11-22T16:05:02Z
definition: A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays.
id: OMP:0005086
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: resistance to x-ray radiation

increased resistance to dessication stress
type: Class
subclass of: altered resistance to dessication stress phenotype
creation date: 2013-12-06T14:14:31Z
definition: An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control.
id: OMP:0005087
has_related_synonym: decreased dessication sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased dessication sensitivity
annotated source: increased resistance to dessication stress
annotated property: has_related_synonym

Axiom
annotated target: An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to dessication stress

decreased resistance to dessication stress
type: Class
subclass of: altered resistance to dessication stress phenotype
creation date: 2013-12-06T14:15:06Z
definition: An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control.
id: OMP:0005088
has_related_synonym: increased dessication sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
database_cross_reference: OMP:WAM
annotated target: increased dessication sensitivity
annotated source: decreased resistance to dessication stress
annotated property: has_related_synonym

Axiom
annotated target: An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to dessication stress

increased resistance to freeze/thawing stress
type: Class
subclass of: altered resistance to freeze/thaw stress
creation date: 2013-12-06T14:28:16Z
definition: An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control.
id: OMP:0005089
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to freeze/thawing stress

decreased resistance to freeze/thawing stress
type: Class
subclass of: altered resistance to freeze/thaw stress
creation date: 2013-12-06T14:28:46Z
definition: An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control.
id: OMP:0005090
has_related_synonym: decreased freeze/thaw sensitivity.
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to freeze/thawing stress

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased freeze/thaw sensitivity.
annotated source: decreased resistance to freeze/thawing stress
annotated property: has_related_synonym

increased resistance to oxidative stress
type: Class
subclass of: altered resistance to oxidative stress
creation date: 2013-12-06T17:57:46Z
definition: An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control.
id: OMP:0005091
has_exact_synonym: decreased sensitivity to oxidative stress
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to oxidative stress

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased sensitivity to oxidative stress
annotated source: increased resistance to oxidative stress
annotated property: has_exact_synonym

decreased resistance to oxidative stress
type: Class
subclass of: altered resistance to oxidative stress
creation date: 2013-12-06T17:59:14Z
definition: An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control.
id: OMP:0005092
has_exact_synonym: increased sensitivity to oxidative stress
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to oxidative stress

Axiom
database_cross_reference: OMP:WAM
annotated target: increased sensitivity to oxidative stress
annotated source: decreased resistance to oxidative stress
annotated property: has_exact_synonym

increased resistance to gamma-ray radiation
type: Class
subclass of: altered resistance to gamma-ray radiation
creation date: 2013-12-17T13:05:40Z
definition: An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control.
id: OMP:0005093
has_narrow_synonym: decreased gamma ray sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to gamma-ray radiation

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased gamma ray sensitivity
annotated source: increased resistance to gamma-ray radiation
annotated property: has_narrow_synonym

decreased resistance to gamma-ray radiation
type: Class
subclass of: altered resistance to gamma-ray radiation
creation date: 2013-12-17T13:06:05Z
definition: An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control.
id: OMP:0005094
has_narrow_synonym: increased gamma ray sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to gamma-ray radiation

Axiom
database_cross_reference: OMP:WAM
annotated target: increased gamma ray sensitivity
annotated source: decreased resistance to gamma-ray radiation
annotated property: has_narrow_synonym

increased resistance to x-ray radiation
type: Class
subclass of: altered resistance to x-ray radiation
creation date: 2013-12-17T13:26:43Z
definition: An altered x-ray radiation phenotype were resistance is increased relative to a designated control.
id: OMP:0005095
has_narrow_synonym: decreased x-ray sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased x-ray sensitivity
annotated source: increased resistance to x-ray radiation
annotated property: has_narrow_synonym

Axiom
annotated target: An altered x-ray radiation phenotype were resistance is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to x-ray radiation

decreased resistance to x-ray radiation
type: Class
subclass of: altered resistance to x-ray radiation
creation date: 2013-12-17T13:28:20Z
definition: An altered x-ray radiation phenotype where resistance is decreased relative to a designated control.
id: OMP:0005096
has_narrow_synonym: increased x-ray sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered x-ray radiation phenotype where resistance is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to x-ray radiation

Axiom
database_cross_reference: OMP:WAM
annotated target: increased x-ray sensitivity
annotated source: decreased resistance to x-ray radiation
annotated property: has_narrow_synonym

increased resistance to UV radiation
type: Class
equivalent class: Class
  intersection of: altered UV-radiation resistance
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered UV-radiation resistance
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2013-12-17T13:41:53Z
definition: An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control.
id: OMP:0005097
has_related_synonym: decreased UV sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
database_cross_reference: OMP:WAM
annotated target: decreased UV sensitivity
annotated source: increased resistance to UV radiation
annotated property: has_related_synonym

Axiom
annotated target: An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to UV radiation

decreased resistance to UV radiation
type: Class
equivalent class: Class
  intersection of: altered UV-radiation resistance
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered UV-radiation resistance
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2013-12-17T13:43:32Z
definition: An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control.
id: OMP:0005098
has_related_synonym: increased UV sensitivity
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to UV radiation

Axiom
database_cross_reference: OMP:WAM
annotated target: increased UV sensitivity
annotated source: decreased resistance to UV radiation
annotated property: has_related_synonym

response to starvation stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2014-01-21T12:13:04Z
definition: A stress response phenotype dealing with the response to deprivation of nourishment.
id: OMP:0005099
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype dealing with the response to deprivation of nourishment.
database_cross_reference: GO:0009267
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to starvation stress phenotype

macrolide dependent growth
type: Class
subclass of: drug-dependent population growth phenotype
creation date: 2014-02-11T11:53:51Z
definition: A growth phenotype where growth is dependent on the presence of a macrolide.
id: OMP:0005100
has_narrow_synonym: erythromycin dependent growth
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A growth phenotype where growth is dependent on the presence of a macrolide.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: macrolide dependent growth

aminoglycoside dependent growth
type: Class
subclass of: drug-dependent population growth phenotype
creation date: 2014-02-11T11:54:51Z
definition: A growth phenotype where growth is dependent on the presence of an aminoglycoside.
id: OMP:0005101
has_obo_namespace: microbial_phenotype
has_narrow_synonym: streptomycin dependent growth
created by: wmeza

Axiom
annotated target: A growth phenotype where growth is dependent on the presence of an aminoglycoside.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: aminoglycoside dependent growth

increased enzymatic activity
type: Class
subclass of: altered enzymatic activity
creation date: 2014-04-17T10:54:45Z
definition: An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control.
id: OMP:0005102
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased enzymatic activity

decreased catalytic activity
type: Class
subclass of: altered enzymatic activity
creation date: 2014-04-17T10:55:05Z
definition: An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control.
id: OMP:0005103
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased catalytic activity

abolished resistance to dessication stress
type: Class
subclass of: decreased resistance to dessication stress
creation date: 2014-07-17T13:11:33Z
definition: A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished.
id: OMP:0005104
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to dessication stress

abolished resistance to freeze/thawing stress
type: Class
subclass of: decreased resistance to freeze/thawing stress
creation date: 2014-07-17T14:10:28Z
definition: A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished.
id: OMP:0005105
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to freeze/thawing stress

increased lifespan
type: Class
subclass of: altered lifespan phenotype
creation date: 2014-05-07T12:39:57Z
definition: A lifespan phenotype where lifespan is increased relative to a designated control.
id: OMP:0005106
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A lifespan phenotype where lifespan is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased lifespan

decreased lifespan
type: Class
subclass of: altered lifespan phenotype
creation date: 2014-05-07T12:40:14Z
definition: An altered lifespan phenotype where the lifespan is decreased relative to a designated control.
id: OMP:0005107
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered lifespan phenotype where the lifespan is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased lifespan

increased cell diameter
type: Class
subclass of: increased cell size
creation date: 2014-07-02T18:39:12Z
definition: MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control.
id: OMP:0005108
has_alternative_id: OMP:0007664
has_exact_synonym: increased cell width
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is increased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is increased relative to a designated control.
database_cross_reference: OMP:DAS
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased cell diameter

decreased cell diameter
type: Class
subclass of: decreased cell size
creation date: 2014-07-02T18:46:00Z
definition: MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control.
id: OMP:0005109
has_alternative_id: OMP:0007665
has_exact_synonym: decreased cell width
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: MERGED DEFINITION: An altered cell size phenotype where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control. TARGET DEFINITION: An altered cell size phenotype where the diameter of a coccus-shaped (spherical) microbial cell or cells is decreased relative to a designated control. -------------------- SOURCE DEFINITION: An altered cell size phenotype where the width of a non-coccus, i.e. rod- or spiral-shaped, microbial cell or cells is decreased relative to a designated control.
database_cross_reference: OMP:DAS
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased cell diameter

abolished phospholipase activity
type: Class
subclass of: absence of phospholipase activity
subclass of: decreased phospholipase activity
creation date: 2016-01-26T15:19:53Z
definition: A decreased phospholipase activity phenotype where phospholipase activity is abolished.
created by: Jesus
id: OMP:0005110
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased phospholipase activity phenotype where phospholipase activity is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished phospholipase activity

resistance to killing by host phenotype
type: Class
subclass of: microbe-host interaction phenotype
creation date: 2016-02-02T13:52:43Z
definition: A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host.
database_cross_reference: APO:0000324
created by: Jesus
id: OMP:0005111
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: resistance to killing by host phenotype

resistance to killing by host cells
type: Axiom
annotated target: APO:0000324
annotated source: resistance to killing by host phenotype
annotated property: database_cross_reference

response to SDS-EDTA stress phenotype
type: Class
subclass of: response to stress phenotype
creation date: 2014-07-07T13:21:43Z
definition: A stress response phenotype dealing with the response to exposure to SDS-EDTA.
id: OMP:0005112
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A stress response phenotype dealing with the response to exposure to SDS-EDTA.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: response to SDS-EDTA stress phenotype

decreased resistance to SDS-EDTA stress
type: Class
subclass of: altered resistance to SDS-EDTA stress
creation date: 2014-07-07T13:50:24Z
definition: An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control.
id: OMP:0005113
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to SDS-EDTA stress

increased resistance to SDS-EDTA stress
type: Class
subclass of: altered resistance to SDS-EDTA stress
creation date: 2014-07-07T13:50:45Z
definition: An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control.
id: OMP:0005114
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to SDS-EDTA stress

cell cycle phenotype
type: Class
subclass of: cellular process phenotype
creation date: 2014-08-07T14:54:52Z
definition: A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division.
database_cross_reference: GO:0007049
id: OMP:0005115
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: cell division cycle
has_related_synonym: cell division phenotype
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A cellular process phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division.
database_cross_reference: GO:0007049
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: cell cycle phenotype

cell cycle
type: Axiom
annotated target: GO:0007049
annotated source: cell cycle phenotype
annotated property: database_cross_reference

multi-organism process phenotype
type: Class
subclass of: microbial phenotype
creation date: 2014-07-08T17:10:17Z
definition: A microbial phenotype related to a biological process that involves two or more organisms of the same or different species.
database_cross_reference: GO:0051704
id: OMP:0005116
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: wmeza
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to a biological process that involves two or more organisms of the same or different species.
database_cross_reference: GO:0051704
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: multi-organism process phenotype

multi-organism process
type: Axiom
annotated target: GO:0051704
annotated source: multi-organism process phenotype
annotated property: database_cross_reference

presence of hemolysis
type: Class
subclass of: hemolysis test
creation date: 2014-07-08T17:55:17Z
definition: A hemolysis test phenotype where a cell or cells causes hemolysis.
id: OMP:0005117
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A hemolysis test phenotype where a cell or cells causes hemolysis.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of hemolysis

altered resistance to acidic pH stress phenotype
type: Class
subclass of: altered resistance to stress
subclass of: resistance to pH shock phenotype
creation date: 2014-07-11T12:55:53Z
definition: A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control.
id: OMP:0005118
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered resistance to acidic pH stress phenotype

altered resistance to alkaline pH stress phenotype
type: Class
subclass of: altered resistance to stress
subclass of: resistance to alkaline pH stress phenotype
creation date: 2014-07-11T12:58:56Z
definition: A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control.
id: OMP:0005119
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered resistance to alkaline pH stress phenotype

altered resistance to dessication stress phenotype
type: Class
subclass of: altered resistance to stress
subclass of: resistance to dessication stress phenotype
creation date: 2014-07-11T12:59:47Z
definition: A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control.
id: OMP:0005120
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered resistance to dessication stress phenotype

altered resistance to freeze/thaw stress
type: Class
subclass of: altered resistance to stress
subclass of: resistance to freeze-thaw stress phenotype
creation date: 2014-07-11T13:00:23Z
definition: A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control.
id: OMP:0005121
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered resistance to freeze/thaw stress

altered resistance to oxidative stress
type: Class
subclass of: resistance to oxidative stress phenotype
subclass of: altered resistance to stress
creation date: 2014-07-11T13:03:36Z
definition: A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control.
id: OMP:0005122
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered resistance to oxidative stress

altered resistance to gamma-ray radiation
type: Class
subclass of: resistance to gamma-ray radiation phenotype
subclass of: altered resistance to radiation stress
creation date: 2014-07-11T13:16:15Z
definition: A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control.
id: OMP:0005123
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered resistance to gamma-ray radiation

altered resistance to x-ray radiation
type: Class
subclass of: resistance to x-ray radiation
subclass of: altered resistance to radiation stress
creation date: 2014-07-11T13:16:47Z
definition: A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control.
id: OMP:0005124
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered resistance to x-ray radiation

altered UV-radiation resistance
type: Class
equivalent class: Class
  intersection of: resistance to UV radiation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: resistance to UV radiation phenotype
subclass of: altered resistance to radiation stress
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-07-11T13:56:51Z
definition: A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control.
id: OMP:0005125
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered UV-radiation resistance

altered resistance to SDS-EDTA stress
type: Class
subclass of: altered resistance to chemical stress
creation date: 2014-07-11T13:57:22Z
definition: An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control.
id: OMP:0005126
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered resistance to SDS-EDTA stress

abolished resistance to acidic pH stress
type: Class
subclass of: decreased resistance to acidic pH stress
creation date: 2014-07-15T16:46:17Z
definition: A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished.
id: OMP:0005127
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to acidic pH stress

abolished resistance to alkaline pH stress
type: Class
subclass of: decreased resistance to alkaline pH stress
creation date: 2014-07-15T17:31:56Z
definition: A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished.
id: OMP:0005128
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to alkaline pH stress

altered biofilm formation
type: Class
subclass of: biofilm formation phenotype
subclass of: altered microbial phenotype
creation date: 2014-07-16T12:36:13Z
definition: A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control.
id: OMP:0005129
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A biofilm formation phenotype where the occurrence, extent, or timing of biofilm formation is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered biofilm formation

altered enzymatic activity
type: Class
equivalent class: Class
  intersection of: enzymatic activity phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: enzymatic activity phenotype
subclass of: altered microbial phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-07-16T17:48:24Z
definition: An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control.
id: OMP:0005130
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered enzymatic activity

abolished resistance to oxidative stress
type: Class
subclass of: decreased resistance to oxidative stress
subclass of: absence of resistance to oxidative stress
creation date: 2014-07-17T14:18:37Z
definition: A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished.
id: OMP:0005131
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to oxidative stress

abolished resistance to gamma ray radiation
type: Class
subclass of: decreased resistance to gamma-ray radiation
creation date: 2014-07-17T14:23:39Z
definition: A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished.
id: OMP:0005132
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to gamma ray radiation

abolished resistance to x-ray radiation
type: Class
subclass of: decreased resistance to x-ray radiation
creation date: 2014-07-17T14:28:44Z
definition: A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished.
id: OMP:0005133
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to x-ray radiation

abolished resistance to UV radiation
type: Class
subclass of: decreased resistance to UV radiation
subclass of: absence of UV radiation resistance
creation date: 2014-07-17T17:22:15Z
definition: A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished.
id: OMP:0005134
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to UV radiation

abolished resistance to SDS-EDTA stress
type: Class
subclass of: decreased resistance to SDS-EDTA stress
creation date: 2014-07-17T17:39:39Z
definition: A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished.
id: OMP:0005135
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: abolished resistance to SDS-EDTA stress

altered cell cycle
type: Class
subclass of: cell cycle phenotype
subclass of: altered microbial phenotype
creation date: 2014-08-07T14:55:46Z
definition: A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control.
id: OMP:0005136
has_narrow_synonym: abnormal cell cycle
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: A cellular process phenotype where the progression of a microbial cell through the cell cycle is altered relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: altered cell cycle

Axiom
database_cross_reference: FYPO:0000011
annotated target: abnormal cell cycle
annotated source: altered cell cycle
annotated property: has_narrow_synonym

increased septation
type: Class
subclass of: altered septation
creation date: 2014-08-07T14:57:39Z
definition: An altered septation phenotype where formation of new cell septa is increased relative to a designated control.
id: OMP:0005137
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered septation phenotype where formation of new cell septa is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased septation

decreased septation
type: Class
subclass of: altered septation
creation date: 2014-08-07T14:58:34Z
definition: An altered septation phenotype where formation of new cell septa is decreased relative to a designated control.
id: OMP:0005138
has_obo_namespace: microbial_phenotype
created by: wmeza

Axiom
annotated target: An altered septation phenotype where formation of new cell septa is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased septation

presence of resistance to killing by host
type: Class
subclass of: resistance to killing by host phenotype
creation date: 2016-02-02T13:54:09Z
definition: A resistance to killing by host phenotype where a microbe is resistant to killing by a host.
created by: Jesus
id: OMP:0005139
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to killing by host phenotype where a microbe is resistant to killing by a host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of resistance to killing by host

absence of resistance to killing by host
type: Class
subclass of: resistance to killing by host phenotype
creation date: 2016-02-02T13:54:58Z
definition: A resistance to killing by host phenotype where a microbe is sensitive to killing by a host.
created by: Jesus
id: OMP:0005140
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to killing by host phenotype where a microbe is sensitive to killing by a host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of resistance to killing by host

altered resistance to killing by host
type: Class
subclass of: resistance to killing by host phenotype
subclass of: altered microbe-host interaction
creation date: 2016-02-02T13:55:50Z
definition: A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control.
created by: Jesus
id: OMP:0005141
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered resistance to killing by host

increased resistance to killing by host
type: Class
subclass of: altered resistance to killing by host
creation date: 2016-02-02T13:57:14Z
definition: An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control.
created by: Jesus
id: OMP:0005142
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased resistance to killing by host

decreased resistance to killing by host
type: Class
subclass of: altered resistance to killing by host
creation date: 2016-02-02T13:57:57Z
definition: An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control.
created by: Jesus
id: OMP:0005143
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased resistance to killing by host

vacuolar morphology phenotype
type: Class
subclass of: cell morphology phenotype
creation date: 2016-02-03T16:33:50Z
definition: A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions.
database_cross_reference: GO:0005773
created by: Jesus
id: OMP:0005144
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

vacuole
type: Axiom
annotated target: GO:0005773
annotated source: vacuolar morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions.
database_cross_reference: GO:0005773
database_cross_reference: OMP:JG
annotated property: definition
annotated source: vacuolar morphology phenotype

altered vacuolar morphology
type: Class
subclass of: vacuolar morphology phenotype
subclass of: altered cell morphology
creation date: 2016-02-03T16:37:58Z
definition: A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control.
created by: Jesus
id: OMP:0005145
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered vacuolar morphology

decreased vacuolar size
type: Class
subclass of: altered vacuolar morphology
creation date: 2016-02-03T16:39:06Z
definition: An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control.
created by: Jesus
id: OMP:0005146
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased vacuolar size

increased vacuolar size
type: Class
subclass of: altered vacuolar morphology
creation date: 2016-02-03T16:39:51Z
definition: An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control.
created by: Jesus
id: OMP:0005147
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased vacuolar size

ferric reductase activity phenotype
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-02-11T12:43:04Z
definition: An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor.
created by: Jesus
id: OMP:0005148
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: ferric reductase activity phenotype

absence of ferric reductase activity
type: Class
subclass of: ferric reductase activity phenotype
creation date: 2016-02-11T12:44:19Z
definition: A ferric reductase phenotype where an organism does not exhibit ferric reductase activity.
created by: Jesus
id: OMP:0005149
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A ferric reductase phenotype where an organism does not exhibit ferric reductase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of ferric reductase activity

altered ferric reductase activity
type: Class
subclass of: altered enzymatic activity
subclass of: ferric reductase activity phenotype
creation date: 2016-02-11T12:44:51Z
definition: A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control.
created by: Jesus
id: OMP:0005150
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered ferric reductase activity

decreased ferric reductase activity
type: Class
equivalent class: Class
  intersection of: altered ferric reductase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered ferric reductase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2016-02-11T12:45:18Z
definition: An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control.
created by: Jesus
id: OMP:0005151
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased ferric reductase activity

increased ferric reductase activity
type: Class
equivalent class: Class
  intersection of: altered ferric reductase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered ferric reductase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2016-02-11T12:45:43Z
definition: An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control.
created by: Jesus
id: OMP:0005152
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased ferric reductase activity

presence of ferric reductase activity
type: Class
subclass of: ferric reductase activity phenotype
creation date: 2016-02-11T12:46:10Z
definition: A ferric reductase phenotype where an organism exhibits ferric reductase activity.
created by: Jesus
id: OMP:0005153
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A ferric reductase phenotype where an organism exhibits ferric reductase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of ferric reductase activity

protein kinase A activity phenotype
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-02-11T13:11:51Z
definition: An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors.
created by: Jesus
id: OMP:0005154
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: protein kinase A activity phenotype

absence of protein kinase A activity
type: Class
subclass of: protein kinase A activity phenotype
creation date: 2016-02-11T13:12:38Z
definition: A protein kinase A phenotype where an organism does not exhibit protein kinase A activity.
created by: Jesus
id: OMP:0005155
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A protein kinase A phenotype where an organism does not exhibit protein kinase A activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of protein kinase A activity

altered protein kinase A activity
type: Class
subclass of: altered enzymatic activity
subclass of: protein kinase A activity phenotype
creation date: 2016-02-11T13:14:19Z
definition: A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control.
created by: Jesus
id: OMP:0005156
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered protein kinase A activity

decreased protein kinase A activity
type: Class
equivalent class: Class
  intersection of: altered protein kinase A activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered protein kinase A activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2016-02-11T13:14:52Z
definition: An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control.
created by: Jesus
id: OMP:0005157
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased protein kinase A activity

increased protein kinase A activity
type: Class
equivalent class: Class
  intersection of: altered protein kinase A activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered protein kinase A activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2016-02-11T13:15:29Z
definition: An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control.
created by: Jesus
id: OMP:0005158
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased protein kinase A activity

presence of protein kinase A activity
type: Class
subclass of: protein kinase A activity phenotype
creation date: 2016-02-11T13:16:11Z
definition: A protein kinase A phenotype where an organism exhibits protein kinase A activity.
created by: Jesus
id: OMP:0005159
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A protein kinase A phenotype where an organism exhibits protein kinase A activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of protein kinase A activity

phosphatase activity phenotype
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-02-11T13:29:38Z
definition: An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive.
created by: Jesus
id: OMP:0005160
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: phosphatase activity phenotype

absence of phosphatase activity
type: Class
subclass of: phosphatase activity phenotype
creation date: 2016-02-11T13:31:39Z
definition: A phosphatase phenotype where an organism does not exhibit Phosphatase activity.
created by: Jesus
id: OMP:0005161
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phosphatase phenotype where an organism does not exhibit Phosphatase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of phosphatase activity

altered phosphatase activity
type: Class
subclass of: altered enzymatic activity
subclass of: phosphatase activity phenotype
creation date: 2016-02-11T13:32:34Z
definition: A phosphatase phenotype where phosphatase activity is altered relative to a designated control.
created by: Jesus
id: OMP:0005162
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phosphatase phenotype where phosphatase activity is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered phosphatase activity

decreased phosphatase activity
type: Class
equivalent class: Class
  intersection of: altered phosphatase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered phosphatase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2016-02-11T13:33:05Z
definition: A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control.
created by: Jesus
id: OMP:0005163
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased phosphatase activity

increased phosphatase activity
type: Class
equivalent class: Class
  intersection of: altered phosphatase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered phosphatase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2016-02-11T13:35:13Z
definition: An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control.
created by: Jesus
id: OMP:0005164
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased phosphatase activity

presence of phosphatase activity
type: Class
subclass of: phosphatase activity phenotype
creation date: 2016-02-11T13:37:34Z
definition: A phosphatase phenotype where an organism exhibits phosphatase activity.
created by: Jesus
id: OMP:0005165
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phosphatase phenotype where an organism exhibits phosphatase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of phosphatase activity

superoxide dismutase activity phenotype
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-02-15T15:25:14Z
definition: An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
database_cross_reference: GO:0004784
created by: Jesus
id: OMP:0005166
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
database_cross_reference: GO:0004784
database_cross_reference: OMP:JG
annotated property: definition
annotated source: superoxide dismutase activity phenotype

superoxide dismutase activity
type: Axiom
annotated target: GO:0004784
annotated source: superoxide dismutase activity phenotype
annotated property: database_cross_reference

absence of superoxide dismutase activity
type: Class
subclass of: superoxide dismutase activity phenotype
creation date: 2016-02-15T15:28:14Z
definition: A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity.
created by: Jesus
id: OMP:0005167
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of superoxide dismutase activity

altered superoxide dismutase activity
type: Class
subclass of: altered enzymatic activity
subclass of: superoxide dismutase activity phenotype
creation date: 2016-02-15T15:29:30Z
definition: A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control.
created by: Jesus
id: OMP:0005168
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered superoxide dismutase activity

decreased superoxide dismutase activity
type: Class
equivalent class: Class
  intersection of: altered superoxide dismutase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered superoxide dismutase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2016-02-15T15:30:28Z
definition: A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control.
created by: Jesus
id: OMP:0005169
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased superoxide dismutase activity

increased superoxide dismutase activity
type: Class
equivalent class: Class
  intersection of: altered superoxide dismutase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered superoxide dismutase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2016-02-15T15:31:28Z
definition: An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control.
created by: Jesus
id: OMP:0005170
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased superoxide dismutase activity

presence of superoxide dismutase activity
type: Class
subclass of: superoxide dismutase activity phenotype
creation date: 2016-02-15T15:32:13Z
definition: A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity.
created by: Jesus
id: OMP:0005171
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of superoxide dismutase activity

delayed cell cycle progression
type: Class
subclass of: altered cell cycle
creation date: 2016-02-15T16:34:58Z
definition: An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control.
created by: Jesus
id: OMP:0005172
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: delayed cell cycle progression

acid phosphatase activity phenotype
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-05-18T14:29:30Z
definition: An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum.
database_cross_reference: GO:0003993
created by: Jesus
id: OMP:0005173
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: acid phosphatase activity phenotype

acid phosphatase activity
type: Axiom
annotated target: GO:0003993
annotated source: acid phosphatase activity phenotype
annotated property: database_cross_reference

presence of acid phosphatase activity
type: Class
subclass of: acid phosphatase activity phenotype
creation date: 2016-05-18T14:33:20Z
definition: An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity.
created by: Jesus
id: OMP:0005174
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of acid phosphatase activity

absence of acid phosphatase activity
type: Class
subclass of: acid phosphatase activity phenotype
creation date: 2016-05-18T14:39:41Z
definition: An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity.
created by: Jesus
id: OMP:0005175
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of acid phosphatase activity

altered acid phosphatase activity
type: Class
subclass of: acid phosphatase activity phenotype
creation date: 2016-05-18T14:40:33Z
definition: An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control.
created by: Jesus
id: OMP:0005176
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered acid phosphatase activity

decreased acid phosphatase activity
type: Class
subclass of: altered acid phosphatase activity
creation date: 2016-05-18T14:41:06Z
definition: An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control.
created by: Jesus
id: OMP:0005177
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased acid phosphatase activity

abolished acid phosphatase activity
type: Class
subclass of: absence of acid phosphatase activity
subclass of: decreased acid phosphatase activity
creation date: 2016-05-18T14:41:52Z
definition: A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished.
created by: Jesus
id: OMP:0005178
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished acid phosphatase activity

increased acid phosphatase activity
type: Class
subclass of: altered acid phosphatase activity
creation date: 2016-05-18T14:43:12Z
definition: An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control.
created by: Jesus
id: OMP:0005179
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased acid phosphatase activity

cytoskeleton morphology phenotype
type: Class
subclass of: cytoskeleton phenotype
creation date: 2016-05-21T09:09:03Z
definition: A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell.
database_cross_reference: GO:0005856
created by: Jesus
id: OMP:0005180
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A physical cellular phenotype relating to the size, shape, or structure of the cytoskeleton of a microbial cell.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: cytoskeleton morphology phenotype

cytoskeleton
type: Axiom
annotated target: GO:0005856
annotated source: cytoskeleton morphology phenotype
annotated property: database_cross_reference

altered cytoskeleton morphology phenotype
type: Class
subclass of: cytoskeleton morphology phenotype
subclass of: altered cytoskeleton
creation date: 2016-05-21T09:57:50Z
definition: A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control.
created by: Jesus
id: OMP:0005181
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control.
database_cross_reference: GO:JG
annotated property: definition
annotated source: altered cytoskeleton morphology phenotype

actin cytoskeleton morphology phenotype
type: Class
subclass of: actin cytoskeleton phenotype
creation date: 2016-05-21T09:59:30Z
definition: A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell.
database_cross_reference: GO:00015629
created by: Jesus
id: OMP:0005182
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A subcellular component phenotype relating to the size, shape, or structure of the actin cytoskeleton of a microbial cell.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: actin cytoskeleton morphology phenotype

absence of actin cytoskeleton
type: Class
subclass of: actin cytoskeleton phenotype
creation date: 2016-05-21T10:01:36Z
definition: An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton.
created by: Jesus
id: OMP:0005183
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An actin cytoskeleton phenotype where a microbial cell or cells lack an actin cytoskeleton.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of actin cytoskeleton

presence of actin cytoskeleton
type: Class
subclass of: actin cytoskeleton phenotype
creation date: 2016-05-21T10:03:01Z
definition: An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton.
created by: Jesus
id: OMP:0005184
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An actin cytoskeleton phenotype where a microbial cell or cells exhibit an actin cytoskeleton.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of actin cytoskeleton

altered actin cytoskeleton morphology
type: Class
subclass of: altered cytoskeleton morphology phenotype
subclass of: actin cytoskeleton morphology phenotype
subclass of: altered actin cytoskeleton
creation date: 2016-05-21T10:03:47Z
definition: An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control.
created by: Jesus
id: OMP:0005185
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered actin cytoskeleton phenotype where the size, shape, or structure of the actin cytoskeleton is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered actin cytoskeleton morphology

decreased cytoskeleton phenotype
type: Class
creation date: 2016-05-21T10:04:40Z
definition: An altered cytoskeleton morphology phenotype where cytoskeleton morphology is decreased relative to a designated control.
created by: Jesus
id: OMP:0005186
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: An altered cytoskeleton morphology phenotype where cytoskeleton morphology is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased cytoskeleton phenotype

abolished cytoskeleton morphology
type: Class
creation date: 2016-05-21T10:05:21Z
definition: A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished.
created by: Jesus
id: OMP:0005187
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished cytoskeleton morphology

increased cytoskeleton morphology
type: Class
creation date: 2016-05-21T10:06:05Z
definition: An altered cytoskeleton morphology phenotype where cytoskeleton morphology is increased relative to a designated control.
created by: Jesus
id: OMP:0005188
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: An altered cytoskeleton morphology phenotype where cytoskeleton morphology is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased cytoskeleton morphology

anaerobic population growth phenotype
type: Class
subclass of: O2 effects on population growth phenotype
creation date: 2016-06-09T15:08:16Z
definition: A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen.
created by: Jesus
id: OMP:0005189
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype related to whether a microbial population can grow in the absence of oxygen.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: anaerobic population growth phenotype

presence of anaerobic population growth
type: Class
subclass of: anaerobic population growth phenotype
creation date: 2016-06-09T15:10:36Z
definition: A population growth range phenotype where a microbial population is able to grow in the absence of oxygen.
created by: Jesus
id: OMP:0005190
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype where a microbial population is able to grow in the absence of oxygen.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of anaerobic population growth

absence of anaerobic population growth
type: Class
subclass of: anaerobic population growth phenotype
creation date: 2016-06-09T15:12:13Z
definition: An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen.
created by: Jesus
id: OMP:0005191
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An anaerobic growth range phenotype where a microbial population cannot grow in the absence of oxygen.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of anaerobic population growth

altered anaerobic population growth
type: Class
subclass of: anaerobic population growth phenotype
creation date: 2016-06-09T15:12:52Z
definition: A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control.
comment: Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
created by: Jesus
id: OMP:0005192
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype where the ability of a microbial population to grow in the absence of oxygen is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered anaerobic population growth

increased anaerobic population growth yield
type: Class
subclass of: increased anaerobic population growth
creation date: 2016-06-09T15:13:45Z
definition: An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control.
created by: Jesus
id: OMP:0005193
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased anaerobic population growth yield

decreased anaerobic population growth yield
type: Class
subclass of: decreased anaerobic population growth
creation date: 2016-06-09T15:14:35Z
definition: An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control.
created by: Jesus
id: OMP:0005194
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased anaerobic population growth yield

abolished anaerobic population growth
type: Class
subclass of: absence of anaerobic population growth
subclass of: decreased anaerobic population growth
creation date: 2016-06-09T15:15:50Z
definition: An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished.
created by: Jesus
id: OMP:0005195
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered anaerobic population growth phenotype where growth of a microbial population in the absence of oxygen is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished anaerobic population growth

increased anaerobic population growth rate
type: Class
subclass of: increased anaerobic population growth
creation date: 2016-06-09T15:19:53Z
definition: An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control.
created by: Jesus
id: OMP:0005196
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased anaerobic population growth rate

decreased anaerobic population growth rate
type: Class
subclass of: decreased anaerobic population growth
creation date: 2016-06-09T15:21:49Z
definition: An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control.
created by: Jesus
id: OMP:0005197
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased anaerobic population growth rate

alpha-1,3-mannosyltransferase activity phenotype
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-06-09T23:05:33Z
definition: An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage.
database_cross_reference: GO:0000033
created by: Jesus
id: OMP:0005198
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: alpha-1,3-mannosyltransferase activity phenotype

alpha-1,3- mannosyltransferase activity
type: Axiom
annotated target: GO:0000033
annotated source: alpha-1,3-mannosyltransferase activity phenotype
annotated property: database_cross_reference

presence of alpha-1,3-mannosyltransferase activity
type: Class
subclass of: alpha-1,3-mannosyltransferase activity phenotype
creation date: 2016-06-09T23:08:19Z
definition: An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity.
created by: Jesus
id: OMP:0005199
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of alpha-1,3-mannosyltransferase activity

absence of alpha-1,3-mannosyltransferase activity
type: Class
subclass of: alpha-1,3-mannosyltransferase activity phenotype
creation date: 2016-06-09T23:09:26Z
definition: An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity.
created by: Jesus
id: OMP:0005200
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity.
database_cross_reference: GO:JG
annotated property: definition
annotated source: absence of alpha-1,3-mannosyltransferase activity

altered alpha-1,3-mannosyltransferase activity
type: Class
subclass of: alpha-1,3-mannosyltransferase activity phenotype
creation date: 2016-06-09T23:13:17Z
definition: An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control.
created by: Jesus
id: OMP:0005201
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered alpha-1,3-mannosyltransferase activity

increased alpha-1,3-mannosyltransferase activity
type: Class
subclass of: altered alpha-1,3-mannosyltransferase activity
creation date: 2016-06-09T23:14:41Z
definition: An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control.
created by: Jesus
id: OMP:0005202
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased alpha-1,3-mannosyltransferase activity

decreased alpha-1,3-mannosyltransferase activity
type: Class
subclass of: altered alpha-1,3-mannosyltransferase activity
creation date: 2016-06-09T23:15:42Z
definition: An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control.
created by: Jesus
id: OMP:0005203
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased alpha-1,3-mannosyltransferase activity

abolished alpha-1,3-mannosyltransferase activity
type: Class
subclass of: absence of alpha-1,3-mannosyltransferase activity
subclass of: altered alpha-1,3-mannosyltransferase activity
creation date: 2016-06-09T23:16:29Z
definition: An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished.
created by: Jesus
id: OMP:0005204
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished alpha-1,3-mannosyltransferase activity

adhesion phenotype
type: Class
subclass of: biological process phenotype
creation date: 2016-06-20T14:06:30Z
definition: A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly.
database_cross_reference: APO:0000288
database_cross_reference: GO:0022610
created by: Jesus
id: OMP:0005205
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

adhesion
type: Axiom
annotated target: APO:0000288
annotated source: adhesion phenotype
annotated property: database_cross_reference

biological adhesion
type: Axiom
annotated target: GO:0022610
annotated source: adhesion phenotype
annotated property: database_cross_reference

Axiom
annotated target: A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: adhesion phenotype

adhesion to host phenotype
type: Class
subclass of: adhesion phenotype
subclass of: colonization of a host phenotype
creation date: 2016-06-20T14:10:51Z
definition: An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship.
database_cross_reference: GO:0044406
created by: Jesus
id: OMP:0005206
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: adhesion to host phenotype

adhesion to host
type: Axiom
annotated target: GO:0044406
annotated source: adhesion to host phenotype
annotated property: database_cross_reference

absence of adhesion to host
type: Class
subclass of: adhesion to host phenotype
creation date: 2016-06-20T14:12:43Z
definition: An adhesion to host phenotype where a microbe lacks the ability to attach to a host.
created by: Jesus
id: OMP:0005207
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An adhesion to host phenotype where a microbe lacks the ability to attach to a host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of adhesion to host

presence of adhesion to host
type: Class
subclass of: adhesion to host phenotype
creation date: 2016-06-20T14:14:40Z
definition: An adhesion to host phenotype where a microbe has the ability to attach to a host.
created by: Jesus
id: OMP:0005208
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An adhesion to host phenotype where a microbe has the ability to attach to a host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of adhesion to host

altered adhesion to host
type: Class
subclass of: adhesion to host phenotype
subclass of: altered biological process
creation date: 2016-06-20T14:15:04Z
definition: An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control.
created by: Jesus
id: OMP:0005209
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered adhesion to host

decreased adhesion to host
type: Class
subclass of: altered adhesion to host
creation date: 2016-06-20T14:16:04Z
definition: An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control.
created by: Jesus
id: OMP:0005210
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased adhesion to host

abolished adhesion to host
type: Class
subclass of: absence of adhesion to host
subclass of: decreased adhesion to host
creation date: 2016-06-20T14:16:42Z
definition: A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished.
created by: Jesus
id: OMP:0005211
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished adhesion to host

increased adhesion to host
type: Class
subclass of: altered adhesion to host
creation date: 2016-06-20T14:17:26Z
definition: An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control.
created by: Jesus
id: OMP:0005212
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased adhesion to host

presence of adhesion
type: Class
subclass of: adhesion phenotype
creation date: 2016-06-20T14:19:00Z
definition: An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
created by: Jesus
id: OMP:0005213
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of adhesion

absence of adhesion
type: Class
subclass of: adhesion phenotype
creation date: 2016-06-20T14:19:34Z
definition: An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
created by: Jesus
id: OMP:0005214
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of adhesion

altered adhesion
type: Class
subclass of: adhesion phenotype
subclass of: altered biological process
creation date: 2016-06-20T14:20:13Z
definition: An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control.
created by: Jesus
id: OMP:0005215
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered adhesion

increased adhesion
type: Class
subclass of: altered adhesion
creation date: 2016-06-20T14:20:57Z
definition: An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control.
created by: Jesus
id: OMP:0005216
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased adhesion

decreased adhesion
type: Class
subclass of: altered adhesion
creation date: 2016-06-20T14:21:29Z
definition: An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control.
created by: Jesus
id: OMP:0005217
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased adhesion

abolished adhesion
type: Class
subclass of: absence of adhesion
subclass of: decreased adhesion
creation date: 2016-06-20T14:22:55Z
definition: A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished.
created by: Jesus
id: OMP:0005218
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished adhesion

cell fusion phenotype
type: Class
subclass of: cellular process phenotype
creation date: 2016-06-20T23:02:09Z
definition: A cellular process phenotype involving the fusion of individual cells from different organisms.
created by: Jesus
id: OMP:0005219
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cellular process phenotype involving the fusion of individual cells from different organisms.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: cell fusion phenotype

presence of cell fusion
type: Class
subclass of: cell fusion phenotype
creation date: 2016-06-20T23:03:39Z
definition: A cell fusion phenotype where fusion of individual cells from different organisms occurs.
created by: Jesus
id: OMP:0005220
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell fusion phenotype where fusion of individual cells from different organisms occurs.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of cell fusion

altered cell fusion
type: Class
subclass of: cell fusion phenotype
creation date: 2016-06-20T23:04:36Z
definition: A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control.
created by: Jesus
id: OMP:0005221
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered cell fusion

increased cell fusion
type: Class
subclass of: altered cell fusion
creation date: 2016-06-20T23:07:58Z
definition: An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control.
created by: Jesus
id: OMP:0005222
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased cell fusion

decreased cell fusion
type: Class
subclass of: altered cell fusion
creation date: 2016-06-20T23:08:40Z
definition: An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control.
created by: Jesus
id: OMP:0005223
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased cell fusion

abolished cell fusion
type: Class
subclass of: decreased cell fusion
creation date: 2016-06-20T23:09:29Z
definition: A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished.
created by: Jesus
id: OMP:0005224
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished cell fusion

delayed cell fusion
type: Class
subclass of: altered cell fusion
creation date: 2016-06-20T23:10:02Z
definition: An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control.
created by: Jesus
id: OMP:0005225
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: delayed cell fusion

cell fusion during mating phenotype
type: Class
subclass of: cell fusion phenotype
subclass of: mating phenotype
creation date: 2016-06-20T23:11:14Z
definition: A cell fusion phenotype relating to the fusion of individual cells from each partner during mating.
database_cross_reference: APO:0000033
created by: Jesus
id: OMP:0005226
has_related_synonym: conjugation with cellular fusion
has_obo_namespace: microbial_phenotype

cell fusion
type: Axiom
annotated target: APO:0000033
annotated source: cell fusion during mating phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell fusion phenotype relating to the fusion of individual cells from each partner during mating.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: cell fusion during mating phenotype

Axiom
database_cross_reference: GO:0000747
annotated target: conjugation with cellular fusion
annotated source: cell fusion during mating phenotype
annotated property: has_related_synonym

presence of cell fusion during mating
type: Class
subclass of: cell fusion during mating phenotype
creation date: 2016-06-20T23:15:38Z
definition: A cell fusion during mating phenotype where individual cells from each partner fuse during mating.
created by: Jesus
id: OMP:0005227
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell fusion during mating phenotype where individual cells from each partner fuse during mating.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of cell fusion during mating

absence of cell fusion during mating
type: Class
subclass of: cell fusion during mating phenotype
creation date: 2016-06-20T23:16:33Z
definition: A cell fusion during mating phenotype where cell fusion does not occur during mating.
created by: Jesus
id: OMP:0005228
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell fusion during mating phenotype where cell fusion does not occur during mating.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of cell fusion during mating

altered cell fusion during mating
type: Class
subclass of: cell fusion during mating phenotype
creation date: 2016-06-20T23:17:17Z
definition: A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control.
created by: Jesus
id: OMP:0005229
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered cell fusion during mating

increased cell fusion during mating
type: Class
subclass of: altered cell fusion during mating
creation date: 2016-06-20T23:17:51Z
definition: An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating.
created by: Jesus
id: OMP:0005230
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased cell fusion during mating

decreased cell fusion during mating
type: Class
subclass of: altered cell fusion during mating
creation date: 2016-06-20T23:21:08Z
definition: An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating.
created by: Jesus
id: OMP:0005231
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased cell fusion during mating

abolished cell fusion during mating
type: Class
subclass of: decreased cell fusion during mating
creation date: 2016-06-20T23:21:44Z
definition: A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished.
created by: Jesus
id: OMP:0005232
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished cell fusion during mating

cell wall morphology phenotype
type: Class
subclass of: cell envelope morphology phenotype
creation date: 2016-06-20T23:33:27Z
definition: A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
database_cross_reference: APO:0000053
created by: Jesus
id: OMP:0005233
has_obo_namespace: microbial_phenotype

Cell wall morphology
type: Axiom
annotated target: APO:0000053
annotated source: cell wall morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
database_cross_reference: GO:0005618
database_cross_reference: OMP:JG
annotated property: definition
annotated source: cell wall morphology phenotype

altered cell wall morphology
type: Class
subclass of: cell wall morphology phenotype
subclass of: altered cell morphology
creation date: 2016-06-20T23:36:20Z
definition: A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control.
created by: Jesus
id: OMP:0005234
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered cell wall morphology

presence of cell wall
type: Class
subclass of: cell wall morphology phenotype
creation date: 2016-06-20T23:37:37Z
definition: A cell wall morphology phenotype where a cell or cells exhibit a cell wall.
created by: Jesus
id: OMP:0005235
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell wall morphology phenotype where a cell or cells exhibit a cell wall.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of cell wall

absence of cell wall
type: Class
subclass of: cell wall morphology phenotype
creation date: 2016-06-20T23:38:17Z
definition: A cell wall morphology phenotype where a cell or cells lack a cell wall.
created by: Jesus
id: OMP:0005236
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell wall morphology phenotype where a cell or cells lack a cell wall.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of cell wall

golgi apparatus phenotype
type: Class
subclass of: cellular component phenotype
creation date: 2016-06-20T23:41:43Z
definition: A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport.
database_cross_reference: GO:0005794
created by: Jesus
id: OMP:0005237
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: golgi apparatus phenotype

golgi apparatus
type: Axiom
annotated target: GO:0005794
annotated source: golgi apparatus phenotype
annotated property: database_cross_reference

golgi apparatus morphology phenotype
type: Class
subclass of: golgi apparatus phenotype
creation date: 2016-06-20T23:43:17Z
definition: A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack.
database_cross_reference: APO:0000243
created by: Jesus
id: OMP:0005238
has_obo_namespace: microbial_phenotype

Golgi morphology
type: Axiom
annotated target: APO:0000243
annotated source: golgi apparatus morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: golgi apparatus morphology phenotype

altered golgi morphology
type: Class
subclass of: golgi apparatus morphology phenotype
creation date: 2016-06-20T23:44:33Z
definition: A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control.
created by: Jesus
id: OMP:0005239
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered golgi morphology

presence of golgi apparatus
type: Class
subclass of: golgi apparatus phenotype
creation date: 2016-06-20T23:45:22Z
definition: A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus.
created by: Jesus
id: OMP:0005240
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of golgi apparatus

absence of golgi apparatus
type: Class
subclass of: golgi apparatus phenotype
creation date: 2016-06-20T23:46:03Z
definition: A golgi apparatus phenotype where a cell or cells lack a golgi apparatus.
created by: Jesus
id: OMP:0005241
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A golgi apparatus phenotype where a cell or cells lack a golgi apparatus.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of golgi apparatus

delayed cell fusion during mating
type: Class
subclass of: altered cell fusion during mating
creation date: 2016-06-23T14:28:58Z
definition: An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control.
created by: Jesus
id: OMP:0005242
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: delayed cell fusion during mating

filamentous growth phenotype
type: Class
subclass of: growth phenotype
creation date: 2016-06-23T14:38:44Z
database_cross_reference: APO:0000027
definition: An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape.
database_cross_reference: GO:0030447
created by: Jesus
id: OMP:0005243
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

filamentous growth
type: Axiom
annotated target: GO:0030447
annotated source: filamentous growth phenotype
annotated property: database_cross_reference

development
type: Axiom
annotated target: APO:0000027
annotated source: filamentous growth phenotype
annotated property: database_cross_reference

Axiom
annotated target: An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape.
database_cross_reference: GO:0030447
database_cross_reference: OMP:JG
annotated property: definition
annotated source: filamentous growth phenotype

altered filamentous growth
type: Class
subclass of: filamentous growth phenotype
creation date: 2016-06-23T14:41:10Z
definition: A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control.
created by: Jesus
id: OMP:0005244
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered filamentous growth

increased filamentous growth
type: Class
subclass of: altered filamentous growth
creation date: 2016-06-23T14:41:44Z
definition: An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control.
created by: Jesus
id: OMP:0005245
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased filamentous growth

decreased filamentous growth
type: Class
subclass of: altered filamentous growth
creation date: 2016-06-23T14:42:18Z
definition: An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control.
created by: Jesus
id: OMP:0005246
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased filamentous growth

abolished filamentous growth
type: Class
subclass of: decreased filamentous growth
creation date: 2016-06-23T14:42:45Z
definition: A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished.
created by: Jesus
id: OMP:0005247
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished filamentous growth

presence of filamentous growth
type: Class
subclass of: filamentous growth phenotype
creation date: 2016-06-23T14:43:53Z
definition: A filamentous growth phenotype where a microbe exhibits filamentous growth.
created by: Jesus
id: OMP:0005248
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A filamentous growth phenotype where a microbe exhibits filamentous growth.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of filamentous growth

absence of filamentous growth
type: Class
subclass of: filamentous growth phenotype
creation date: 2016-06-23T14:44:33Z
definition: A filamentous growth phenotype where a microbe does not exhibit filamentous growth.
created by: Jesus
id: OMP:0005249
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A filamentous growth phenotype where a microbe does not exhibit filamentous growth.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of filamentous growth

aerobic population growth phenotype
type: Class
subclass of: O2 effects on population growth phenotype
creation date: 2016-06-23T14:59:55Z
definition: A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%).
created by: Jesus
id: OMP:0005250
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth range phenotype related to the ability of a microbial population to grow in the presence of oxygen gas (O2) at the level found in air (approximately 21%).
database_cross_reference: OMP:JG
annotated property: definition
annotated source: aerobic population growth phenotype

absence of aerobic population growth
type: Class
subclass of: aerobic population growth phenotype
creation date: 2016-06-23T15:00:52Z
definition: An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%).
created by: Jesus
id: OMP:0005251
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aerobic population growth phenotype where a microbial population cannot grow in the presence of atmospheric levels of O2 (approximately 21%).
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of aerobic population growth

altered aerobic population growth
type: Class
subclass of: aerobic population growth phenotype
creation date: 2016-06-23T15:01:40Z
definition: A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control.
created by: Jesus
id: OMP:0005252
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype where the ability of a microbial population to growth in the presence of atmospheric levels of oxygen gas (approximately 20% O2) is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered aerobic population growth

presence of aerobic population growth
type: Class
subclass of: aerobic population growth phenotype
creation date: 2016-06-23T15:02:38Z
definition: A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2).
created by: Jesus
id: OMP:0005253
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype where a microbial population is able to grow in the presence of atmospheric levels of oxygen gas (approximately 21% O2).
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of aerobic population growth

microaerophilic population growth phenotype
type: Class
subclass of: O2 effects on population growth phenotype
creation date: 2016-06-23T15:04:24Z
definition: A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2.
created by: Jesus
id: OMP:0005254
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype relating to the ability of a microbial population to grow when O2 levels are within the range xx-xx% O2, but does not grow at higher levels of O2 or in the absence of O2.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: microaerophilic population growth phenotype

presence of microaerophilic population growth
type: Class
subclass of: microaerophilic population growth phenotype
creation date: 2016-06-23T15:05:26Z
definition: A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions.
created by: Jesus
id: OMP:0005255
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of microaerophilic population growth

absence of microaerophilic growth
type: Class
subclass of: microaerophilic population growth phenotype
creation date: 2016-06-23T15:06:52Z
definition: A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment.
created by: Jesus
id: OMP:0005256
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype in which a microbial population cannot grow in a microaerophilic environment.
database_cross_reference: JG:OMP
annotated property: definition
annotated source: absence of microaerophilic growth

altered microaerophilic population growth
type: Class
subclass of: microaerophilic population growth phenotype
creation date: 2016-06-23T15:07:30Z
definition: A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control.
created by: Jesus
id: OMP:0005257
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype where the ability of a microbial population to grow in a microaerophilic environment is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered microaerophilic population growth

increased microaerophilic population growth rate
type: Class
subclass of: increased microaerophilic population growth
creation date: 2016-06-23T15:07:51Z
definition: An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
created by: Jesus
id: OMP:0005258
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased microaerophilic population growth rate

decreased microaerophilic population growth rate
type: Class
subclass of: decreased microaerophilic population growth
creation date: 2016-06-23T15:08:31Z
definition: An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
created by: Jesus
id: OMP:0005259
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered microaerophilic population growth phenotype where the rate of growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased microaerophilic population growth rate

transport phenotype
type: Class
subclass of: cellular process phenotype
creation date: 2016-06-27T14:17:43Z
definition: A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
database_cross_reference: GO:0006810
created by: Jesus
id: OMP:0005260
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: transport phenotype

endocytosis phenotype
type: Class
subclass of: transport phenotype
creation date: 2016-06-27T14:20:19Z
definition: A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
database_cross_reference: APO:0000075
database_cross_reference: FYPO:0003886
database_cross_reference: GO:0006897
created by: Jesus
id: OMP:0005261
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: endocytosis phenotype

altered endocytosis
type: Class
subclass of: endocytosis phenotype
creation date: 2016-06-27T14:23:04Z
definition: An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control.
created by: Jesus
id: OMP:0005262
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered endocytosis

increased endocytosis
type: Class
subclass of: altered endocytosis
creation date: 2016-06-27T14:23:59Z
definition: An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
database_cross_reference: FYPO:0000425
created by: Jesus
id: OMP:0005263
has_narrow_synonym: increased endocytosis during vegetative growth
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: FYPO:0000425
annotated target: increased endocytosis during vegetative growth
annotated source: increased endocytosis
annotated property: has_narrow_synonym

Axiom
annotated target: An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased endocytosis

decreased endocytosis
type: Class
subclass of: altered endocytosis
creation date: 2016-06-27T14:26:10Z
definition: An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
database_cross_reference: FYPO:0000422
created by: Jesus
id: OMP:0005264
has_narrow_synonym: decreased endocytosis during vegetative growth
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: FYPO:0000422
annotated target: decreased endocytosis during vegetative growth
annotated source: decreased endocytosis
annotated property: has_narrow_synonym

Axiom
annotated target: An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased endocytosis

abolished endocytosis
type: Class
subclass of: decreased endocytosis
subclass of: absence of endocytosis
creation date: 2016-06-27T14:29:14Z
definition: A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished.
created by: Jesus
id: OMP:0005265
has_narrow_synonym: abolished endocytosis during vegetative growth
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: FYPO:0000421
annotated target: abolished endocytosis during vegetative growth
annotated source: abolished endocytosis
annotated property: has_narrow_synonym

Axiom
annotated target: A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished endocytosis

delayed onset of endocytosis
type: Class
subclass of: altered endocytosis
creation date: 2016-06-27T14:31:13Z
definition: An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
created by: Jesus
id: OMP:0005266
has_related_synonym: delayed onset of endocytosis during vegetative growth
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: FYPO:0000424
annotated target: delayed onset of endocytosis during vegetative growth
annotated source: delayed onset of endocytosis
annotated property: has_related_synonym

Axiom
annotated target: An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: delayed onset of endocytosis

presence of endocytosis
type: Class
subclass of: endocytosis phenotype
creation date: 2016-06-27T14:32:32Z
definition: An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis.
created by: Jesus
id: OMP:0005267
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of endocytosis

absence of endocytosis
type: Class
subclass of: endocytosis phenotype
creation date: 2016-06-27T14:33:03Z
definition: An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis.
created by: Jesus
id: OMP:0005268
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of endocytosis

endomembrane system phenotype
type: Class
subclass of: cellular component phenotype
creation date: 2016-06-27T14:45:57Z
definition: A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles.
database_cross_reference: GO:0012505
created by: Jesus
id: OMP:0005269
database_cross_reference: PMID:19121819
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

endomembrane system
type: Axiom
annotated target: GO:0012505
annotated source: endomembrane system phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: endomembrane system phenotype

endomembrane system morphology phenotype
type: Class
subclass of: endomembrane system phenotype
creation date: 2016-06-27T14:48:31Z
database_cross_reference: APO:0000303
definition: An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system.
created by: Jesus
id: OMP:0005270
has_obo_namespace: microbial_phenotype

endomembrane system morphology
type: Axiom
annotated target: APO:0000303
annotated source: endomembrane system morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: endomembrane system morphology phenotype

altered endomembrane system morphology
type: Class
subclass of: endomembrane system morphology phenotype
creation date: 2016-06-27T14:51:21Z
definition: An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control.
created by: Jesus
id: OMP:0005271
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered endomembrane system morphology

presence of endomembrane system
type: Class
subclass of: endomembrane system phenotype
creation date: 2016-06-27T14:52:02Z
definition: An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system.
created by: Jesus
id: OMP:0005272
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of endomembrane system

absence of endomembrane system
type: Class
subclass of: endomembrane system phenotype
creation date: 2016-06-27T14:52:45Z
definition: An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system.
created by: Jesus
id: OMP:0005273
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of endomembrane system

organic heterocyclic compound resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-07-15T15:29:19Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element.
has_narrow_synonym: D-cycloserine resistance phenotype
created by: Jesus
id: OMP:0005274
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: chloripromazine resistance phenotype
has_narrow_synonym: coumarin resistance phenotype
has_narrow_synonym: cycloheximide resistance phenotype
has_narrow_synonym: methotrexate resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: paraquat dichloride resistance phenotype
has_narrow_synonym: phenazine methosulfate resistance phenotype
has_narrow_synonym: pyocyanin resistance phenotype
has_narrow_synonym: radicicol resistance phenotype
has_narrow_synonym: rifampicin resistance phenotype
has_narrow_synonym: thiolactomycin resistance phenotype
has_narrow_synonym: thiolactone resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:34905
annotated target: paraquat dichloride resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:53396
annotated target: phenazine methosulfate resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:556075
annotated target: radicicol resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:62220
annotated target: pyocyanin resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:27641
annotated target: cycloheximide resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:28794
annotated target: coumarin resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:3647
annotated target: chloripromazine resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element.
database_cross_reference: CHEBI:24532
database_cross_reference: OMP:JG
annotated property: definition
annotated source: organic heterocyclic compound resistance phenotype

Axiom
database_cross_reference: CHEBI:28077
annotated target: rifampicin resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CID:445629
annotated target: thiolactomycin resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:44185
annotated target: methotrexate resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:40009
annotated target: D-cycloserine resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:60317
annotated target: thiolactone resistance phenotype
annotated source: organic heterocyclic compound resistance phenotype
annotated property: has_narrow_synonym

altered organic heterocyclic compound resistance
type: Class
subclass of: organic heterocyclic compound resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2016-07-15T15:33:41Z
definition: An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control.
created by: Jesus
id: OMP:0005275
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered organic heterocyclic compound resistance

decreased resistance to organic heterocyclic compound
type: Class
subclass of: altered organic heterocyclic compound resistance
creation date: 2016-07-15T15:34:14Z
definition: An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control.
created by: Jesus
id: OMP:0005276
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased resistance to organic heterocyclic compound

abolished resistance to organic heterocyclic compound
type: Class
subclass of: decreased resistance to organic heterocyclic compound
subclass of: not resistant to organic heterocyclic compound
creation date: 2016-07-15T15:34:45Z
definition: A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished.
created by: Jesus
id: OMP:0005277
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished resistance to organic heterocyclic compound

increased resistance to organic heterocyclic compound
type: Class
subclass of: altered organic heterocyclic compound resistance
creation date: 2016-07-15T15:35:37Z
definition: An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control.
created by: Jesus
id: OMP:0005278
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased resistance to organic heterocyclic compound

not resistant to organic heterocyclic compound
type: Class
subclass of: organic heterocyclic compound resistance phenotype
creation date: 2016-07-15T15:36:29Z
definition: An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound.
created by: Jesus
id: OMP:0005279
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: not resistant to organic heterocyclic compound

resistant to organic heterocyclic compound
type: Class
subclass of: organic heterocyclic compound resistance phenotype
creation date: 2016-07-15T15:37:34Z
definition: An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds.
created by: Jesus
id: OMP:0005280
has_narrow_synonym: cycloheximide
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: resistant to organic heterocyclic compound

Axiom
database_cross_reference: CHEBI:27641
annotated target: cycloheximide
annotated source: resistant to organic heterocyclic compound
annotated property: has_narrow_synonym

colonization of host tissue phenotype
type: Class
subclass of: colonization of a host phenotype
creation date: 2016-08-16T01:05:03Z
definition: A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue.
created by: Jesus
id: OMP:0005281
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: colonization of host tissue phenotype

presence of colonization of host tissue
type: Class
subclass of: colonization of host tissue phenotype
creation date: 2016-08-16T01:06:46Z
definition: A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host.
created by: Jesus
id: OMP:0005282
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of colonization of host tissue

absence of colonization of host tissue
type: Class
subclass of: colonization of host tissue phenotype
creation date: 2016-08-16T01:07:20Z
definition: A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host.
created by: Jesus
id: OMP:0005283
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of colonization of host tissue

altered colonization of host tissue
type: Class
subclass of: colonization of host tissue phenotype
subclass of: altered colonization of a host
creation date: 2016-08-16T01:07:57Z
definition: A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control.
created by: Jesus
id: OMP:0005284
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered colonization of host tissue

increased colonization of host tissue
type: Class
subclass of: altered colonization of host tissue
creation date: 2016-08-16T01:08:32Z
definition: An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control.
created by: Jesus
id: OMP:0005285
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased colonization of host tissue

decreased colonization of host tissue
type: Class
subclass of: altered colonization of host tissue
creation date: 2016-08-16T01:09:04Z
definition: An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control.
created by: Jesus
id: OMP:0005286
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased colonization of host tissue

abolished colonization of host tissue
type: Class
subclass of: absence of colonization of host tissue
subclass of: decreased colonization of host tissue
creation date: 2016-08-16T01:09:35Z
definition: A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished.
created by: Jesus
id: OMP:0005287
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished colonization of host tissue

colonization of tissue in an immunocompromised host phenotype
type: Class
subclass of: colonization of host tissue phenotype
creation date: 2016-08-16T01:46:42Z
definition: A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host.
created by: Jesus
id: OMP:0005288
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: colonization of tissue in an immunocompromised host phenotype

presence of colonization of tissue in an immunocompromised host
type: Class
subclass of: colonization of tissue in an immunocompromised host phenotype
creation date: 2016-08-16T01:47:48Z
definition: A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host.
created by: Jesus
id: OMP:0005289
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of colonization of tissue in an immunocompromised host

absence of colonization of tissue in an immunocompromised host
type: Class
subclass of: colonization of tissue in an immunocompromised host phenotype
creation date: 2016-08-16T01:48:23Z
definition: A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host.
created by: Jesus
id: OMP:0005290
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of colonization of tissue in an immunocompromised host

altered colonization of tissue in an immunocompromised host
type: Class
subclass of: colonization of tissue in an immunocompromised host phenotype
creation date: 2016-08-16T01:49:00Z
definition: A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control.
created by: Jesus
id: OMP:0005291
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered colonization of tissue in an immunocompromised host

increased colonization of tissue in an immunocompromised host
type: Class
subclass of: altered colonization of tissue in an immunocompromised host
creation date: 2016-08-16T01:49:41Z
definition: An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control.
created by: Jesus
id: OMP:0005292
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased colonization of tissue in an immunocompromised host

decreased colonization of tissue in an immunocompromised host
type: Class
subclass of: altered colonization of tissue in an immunocompromised host
creation date: 2016-08-16T01:50:17Z
definition: An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control.
created by: Jesus
id: OMP:0005293
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased colonization of tissue in an immunocompromised host

abolished colonization of tissue in an immunocompromised host
type: Class
subclass of: absence of colonization of tissue in an immunocompromised host
subclass of: decreased colonization of tissue in an immunocompromised host
creation date: 2016-08-16T01:50:45Z
definition: A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished.
created by: Jesus
id: OMP:0005294
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished colonization of tissue in an immunocompromised host

colonization of mouse tissue
type: Class
subclass of: colonization of host tissue phenotype
creation date: 2016-08-29T15:32:17Z
definition: A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue.
created by: Jesus
id: OMP:0005295
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: colonization of mouse tissue

presence of colonization of mouse tissue
type: Class
subclass of: presence of colonization of host tissue
subclass of: colonization of mouse tissue
creation date: 2016-08-29T15:34:02Z
definition: A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue.
created by: Jesus
id: OMP:0005296
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of colonization of mouse tissue

absence of colonization of mouse tissue
type: Class
subclass of: absence of colonization of host tissue
subclass of: colonization of mouse tissue
creation date: 2016-08-29T15:34:47Z
definition: A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue.
created by: Jesus
id: OMP:0005297
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of colonization of mouse tissue

altered colonization of mouse tissue
type: Class
subclass of: altered colonization of host tissue
subclass of: colonization of mouse tissue
creation date: 2016-08-29T15:35:22Z
definition: A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control.
created by: Jesus
id: OMP:0005298
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered colonization of mouse tissue

increased colonization of mouse tissue
type: Class
subclass of: altered colonization of mouse tissue
creation date: 2016-08-29T15:36:17Z
definition: An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control.
created by: Jesus
id: OMP:0005299
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased colonization of mouse tissue

decreased colonization of mouse tissue
type: Class
subclass of: altered colonization of mouse tissue
creation date: 2016-08-29T15:36:52Z
definition: An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control.
created by: Jesus
id: OMP:0005300
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased colonization of mouse tissue

abolished colonization of mouse tissue
type: Class
subclass of: absence of colonization of mouse tissue
subclass of: decreased colonization of mouse tissue
creation date: 2016-08-29T15:37:32Z
definition: A decreased colonization of mouse tissue phenotype where colonization is abolished.
created by: Jesus
id: OMP:0005301
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased colonization of mouse tissue phenotype where colonization is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished colonization of mouse tissue

colonization of tissue in an immunocompromised mouse phenotype
type: Class
subclass of: colonization of tissue in an immunocompromised host phenotype
creation date: 2016-08-30T11:28:41Z
definition: A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse.
created by: Jesus
id: OMP:0005302
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: colonization of tissue in an immunocompromised mouse phenotype

presence of colonization of tissue in an immunocompromised mouse
type: Class
subclass of: colonization of tissue in an immunocompromised mouse phenotype
creation date: 2016-08-30T11:31:08Z
definition: A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse.
created by: Jesus
id: OMP:0005303
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of colonization of tissue in an immunocompromised mouse

absence of colonization of tissue in an immunocompromised mouse
type: Class
subclass of: colonization of tissue in an immunocompromised mouse phenotype
creation date: 2016-08-30T11:32:11Z
definition: A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse.
created by: Jesus
id: OMP:0005304
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of colonization of tissue in an immunocompromised mouse

altered colonization of tissue in an immunocompromised mouse
type: Class
subclass of: colonization of tissue in an immunocompromised mouse phenotype
creation date: 2016-08-30T11:33:51Z
definition: A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
created by: Jesus
id: OMP:0005305
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered colonization of tissue in an immunocompromised mouse

increased colonization of tissue in an immunocompromised mouse
type: Class
subclass of: altered colonization of tissue in an immunocompromised mouse
creation date: 2016-08-30T11:35:33Z
definition: An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
created by: Jesus
id: OMP:0005306
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased colonization of tissue in an immunocompromised mouse

decreased colonization of tissue in an immunocompromised mouse
type: Class
subclass of: altered colonization of tissue in an immunocompromised mouse
creation date: 2016-08-30T11:35:57Z
definition: An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
created by: Jesus
id: OMP:0005307
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased colonization of tissue in an immunocompromised mouse

abolished colonization of tissue in an immunocompromised mouse
type: Class
subclass of: decreased colonization of tissue in an immunocompromised mouse
creation date: 2016-08-30T11:36:46Z
definition: A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished.
created by: Jesus
id: OMP:0005308
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished colonization of tissue in an immunocompromised mouse

colonization of rabbit tissue phenotype
type: Class
subclass of: colonization of host tissue phenotype
creation date: 2016-08-30T11:43:47Z
definition: A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue.
created by: Jesus
id: OMP:0005309
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: colonization of rabbit tissue phenotype

presence of colonization of rabbit tissue
type: Class
subclass of: presence of colonization of host tissue
subclass of: colonization of rabbit tissue phenotype
creation date: 2016-08-30T11:44:31Z
definition: A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue.
created by: Jesus
id: OMP:0005310
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of colonization of rabbit tissue

absence of colonization of rabbit tissue
type: Class
subclass of: absence of colonization of host tissue
subclass of: colonization of rabbit tissue phenotype
creation date: 2016-08-30T11:45:59Z
definition: A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue.
created by: Jesus
id: OMP:0005311
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of colonization of rabbit tissue

altered colonization of rabbit tissue
type: Class
subclass of: altered colonization of host tissue
subclass of: colonization of rabbit tissue phenotype
creation date: 2016-08-30T11:46:52Z
definition: A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
created by: Jesus
id: OMP:0005312
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered colonization of rabbit tissue

increased colonization of rabbit tissue
type: Class
subclass of: altered colonization of rabbit tissue
creation date: 2016-08-30T11:47:21Z
definition: An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control.
created by: Jesus
id: OMP:0005313
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased colonization of rabbit tissue

decreased colonization of rabbit tissue
type: Class
subclass of: altered colonization of rabbit tissue
creation date: 2016-08-30T11:47:50Z
definition: An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
created by: Jesus
id: OMP:0005314
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased colonization of rabbit tissue

abolished colonization of rabbit tissue
type: Class
subclass of: absence of colonization of rabbit tissue
subclass of: decreased colonization of rabbit tissue
creation date: 2016-08-30T11:48:21Z
definition: A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished.
created by: Jesus
id: OMP:0005315
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished colonization of rabbit tissue

colonization of tissue in an immunocompromised rabbit phenotype
type: Class
subclass of: colonization of tissue in an immunocompromised host phenotype
creation date: 2016-08-30T11:49:36Z
definition: A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit.
created by: Jesus
id: OMP:0005316
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: colonization of tissue in an immunocompromised rabbit phenotype

presence of colonization of tissue in an immunocompromised rabbit
type: Class
subclass of: colonization of tissue in an immunocompromised rabbit phenotype
creation date: 2016-08-30T11:50:36Z
definition: A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit.
created by: Jesus
id: OMP:0005317
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of colonization of tissue in an immunocompromised rabbit

absence of colonization of tissue in an immunocompromised rabbit
type: Class
subclass of: colonization of tissue in an immunocompromised rabbit phenotype
creation date: 2016-08-30T11:52:27Z
definition: A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit.
created by: Jesus
id: OMP:0005318
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of colonization of tissue in an immunocompromised rabbit

altered colonization of tissue in an immunocompromised rabbit
type: Class
subclass of: colonization of tissue in an immunocompromised rabbit phenotype
creation date: 2016-08-30T11:52:54Z
definition: A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
created by: Jesus
id: OMP:0005319
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered colonization of tissue in an immunocompromised rabbit

increased colonization of tissue in an immunocompromised rabbit
type: Class
subclass of: altered colonization of tissue in an immunocompromised rabbit
creation date: 2016-08-30T11:55:35Z
definition: An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
created by: Jesus
id: OMP:0005320
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased colonization of tissue in an immunocompromised rabbit

decreased colonization of tissue in an immunocompromised rabbit
type: Class
subclass of: altered colonization of tissue in an immunocompromised rabbit
creation date: 2016-08-30T11:56:07Z
definition: An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
created by: Jesus
id: OMP:0005321
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased colonization of tissue in an immunocompromised rabbit

abolished colonization of tissue in an immunocompromised rabbit
type: Class
subclass of: decreased colonization of tissue in an immunocompromised rabbit
creation date: 2016-08-30T11:56:47Z
definition: A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished.
created by: Jesus
id: OMP:0005322
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished colonization of tissue in an immunocompromised rabbit

altered cell motility by swarming
type: Class
subclass of: altered motility
creation date: 2016-09-19T14:01:13Z
definition: A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control.
id: OMP:0005323
created by: jguzman
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered cell motility by swarming

altered cell motility by swimming
type: Class
subclass of: altered motility
creation date: 2016-09-19T14:02:03Z
definition: A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control.
id: OMP:0005324
created by: jguzman
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered cell motility by swimming

agar invasion phenotype
type: Class
subclass of: growth phenotype
creation date: 2016-09-23T16:58:54Z
definition: An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth.
created by: Jesus
id: OMP:0005325
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: agar invasion phenotype

presence of agar invasion
type: Class
subclass of: agar invasion phenotype
creation date: 2016-09-23T17:03:49Z
definition: An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth.
created by: Jesus
id: OMP:0005326
has_narrow_synonym: invasive growth
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of agar invasion

Axiom
database_cross_reference: APO:0000028
annotated target: invasive growth
annotated source: presence of agar invasion
annotated property: has_narrow_synonym

absence of agar invasion
type: Class
subclass of: agar invasion phenotype
creation date: 2016-09-23T17:05:49Z
definition: An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth.
created by: Jesus
id: OMP:0005327
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of agar invasion

altered agar invasion
type: Class
subclass of: agar invasion phenotype
creation date: 2016-09-23T17:07:22Z
definition: An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control.
created by: Jesus
id: OMP:0005328
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered agar invasion

increased agar invasion
type: Class
subclass of: altered agar invasion
creation date: 2016-09-23T17:07:59Z
definition: An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control.
created by: Jesus
id: OMP:0005329
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased agar invasion

decreased agar invasion phenotype
type: Class
subclass of: altered agar invasion
creation date: 2016-09-23T17:08:25Z
definition: An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control.
created by: Jesus
id: OMP:0005330
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased agar invasion phenotype

abolished agar invasion
type: Class
subclass of: absence of agar invasion
subclass of: decreased agar invasion phenotype
creation date: 2016-09-23T17:08:54Z
definition: A decreased agar invasion phenotype where the ability to invade agar media is abolished.
created by: Jesus
id: OMP:0005331
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased agar invasion phenotype where the ability to invade agar media is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished agar invasion

protein localization phenotype
type: Class
subclass of: cellular component phenotype
creation date: 2016-10-05T14:17:25Z
definition: A cellular component phenotype relating to the localization or placement of proteins within a cell.
database_cross_reference: APO:0000209
created by: Jesus
id: OMP:0005332
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cellular component phenotype relating to the localization or placement of proteins within a cell.
database_cross_reference: APO:0000209
database_cross_reference: OMP:JG
annotated property: definition
annotated source: protein localization phenotype

protein/peptide distribution
type: Axiom
annotated target: APO:0000209
annotated source: protein localization phenotype
annotated property: database_cross_reference

altered protein localization
type: Class
subclass of: protein localization phenotype
creation date: 2016-10-05T14:18:53Z
definition: A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control.
created by: Jesus
id: OMP:0005333
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered protein localization

presence of protein localization
type: Class
subclass of: protein localization phenotype
creation date: 2016-10-05T14:19:21Z
definition: A protein localization phenotype where an organism, cell, or cells exhibit protein localization.
created by: Jesus
id: OMP:0005334
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A protein localization phenotype where an organism, cell, or cells exhibit protein localization.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of protein localization

absence of protein localization
type: Class
subclass of: protein localization phenotype
creation date: 2016-10-05T14:19:51Z
definition: A protein localization phenotype where an organism, cell, or cells lack protein localization.
created by: Jesus
id: OMP:0005335
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A protein localization phenotype where an organism, cell, or cells lack protein localization.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of protein localization

cell lysis phenotype
type: Class
subclass of: cell death phenotype
creation date: 2016-10-31T13:27:46Z
definition: A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised.
created by: Jesus
id: OMP:0005336
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised.
database_cross_reference: FYPO:0002488
database_cross_reference: GO::0019835
database_cross_reference: OMP:JG
annotated property: definition
annotated source: cell lysis phenotype

absence of cell lysis
type: Class
subclass of: cell lysis phenotype
creation date: 2016-10-31T13:29:12Z
definition: A cell lysis phenotype where cytolysis doesn't occur.
created by: Jesus
id: OMP:0005337
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell lysis phenotype where cytolysis doesn't occur.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of cell lysis

presence of cell lysis
type: Class
subclass of: cell lysis phenotype
creation date: 2016-10-31T13:30:04Z
definition: A cell lysis phenotype where cytolysis occurs.
created by: Jesus
id: OMP:0005338
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell lysis phenotype where cytolysis occurs.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of cell lysis

altered cell lysis
type: Class
subclass of: cell lysis phenotype
subclass of: altered cell phenotype
creation date: 2016-10-31T13:30:56Z
definition: A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control.
created by: Jesus
id: OMP:0005339
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered cell lysis

decreased cell lysis
type: Class
subclass of: altered cell lysis
creation date: 2016-10-31T13:31:44Z
definition: An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control.
created by: Jesus
id: OMP:0005340
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased cell lysis

abolished cell lysis
type: Class
subclass of: decreased cell lysis
creation date: 2016-10-31T13:32:41Z
definition: A decreased cell lysis phenotype where cytolysis is abolished.
created by: Jesus
id: OMP:0005341
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased cell lysis phenotype where cytolysis is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished cell lysis

increased cell lysis
type: Class
subclass of: altered cell lysis
creation date: 2016-10-31T13:33:49Z
definition: An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control.
created by: Jesus
id: OMP:0005342
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased cell lysis

organic aromatic compound resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-10-31T13:40:40Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound.
has_narrow_synonym: CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype
created by: Jesus
id: OMP:0005343
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_narrow_synonym: procaine resistance phenotype
has_narrow_synonym: propidium iodide resistance phenotype
has_narrow_synonym: sulfamethizole resistance phenotype
has_narrow_synonym: triclosan resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:51240
annotated target: propidium iodide resistance phenotype
annotated source: organic aromatic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype
database_cross_reference: CHEBI:3259
annotated source: organic aromatic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: organic aromatic compound resistance phenotype

Axiom
database_cross_reference: CHEBI:164200
annotated target: triclosan resistance phenotype
annotated source: organic aromatic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:9331
annotated target: sulfamethizole resistance phenotype
annotated source: organic aromatic compound resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:8430
annotated target: procaine resistance phenotype
annotated source: organic aromatic compound resistance phenotype
annotated property: has_narrow_synonym

altered organic aromatic compound resistance
type: Class
subclass of: organic aromatic compound resistance phenotype
creation date: 2016-10-31T13:45:41Z
definition: An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control.
created by: Jesus
id: OMP:0005344
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered organic aromatic compound resistance

decreased resistance to organic aromatic compounds
type: Class
subclass of: altered organic aromatic compound resistance
creation date: 2016-10-31T13:46:37Z
definition: An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control.
created by: Jesus
id: OMP:0005345
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased resistance to organic aromatic compounds

abolished resistance to organic aromatic compounds
type: Class
subclass of: decreased resistance to organic aromatic compounds
creation date: 2016-10-31T13:47:39Z
definition: A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished.
created by: Jesus
id: OMP:0005346
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished resistance to organic aromatic compounds

increased resistance to organic aromatic compounds
type: Class
subclass of: altered organic aromatic compound resistance
creation date: 2016-10-31T13:48:38Z
definition: An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control.
created by: Jesus
id: OMP:0005347
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased resistance to organic aromatic compounds

not resistant to organic aromatic compounds
type: Class
subclass of: organic aromatic compound resistance phenotype
creation date: 2016-10-31T13:49:36Z
definition: An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds.
created by: Jesus
id: OMP:0005348
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: not resistant to organic aromatic compounds

resistant to organic aromatic compounds
type: Class
subclass of: organic aromatic compound resistance phenotype
creation date: 2016-10-31T13:50:26Z
definition: An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds.
created by: Jesus
id: OMP:0005349
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: resistant to organic aromatic compounds

presence of mating
type: Class
subclass of: mating phenotype
creation date: 2016-11-21T13:08:52Z
definition: A mating phenotype where an organism uses the process of conjugation for sexual reproduction.
created by: Jesus
id: OMP:0005350
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A mating phenotype where an organism uses the process of conjugation for sexual reproduction.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of mating

absence of mating
type: Class
subclass of: mating phenotype
creation date: 2016-11-21T13:10:46Z
definition: A mating phenotype where an organism does not use the process of conjugation for sexual reproduction.
created by: Jesus
id: OMP:0005351
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A mating phenotype where an organism does not use the process of conjugation for sexual reproduction.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of mating

altered mating
type: Class
subclass of: mating phenotype
creation date: 2016-11-21T13:11:47Z
definition: A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control.
created by: Jesus
id: OMP:0005352
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered mating

increased mating
type: Class
subclass of: altered mating
creation date: 2016-11-21T13:13:40Z
definition: An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control.
created by: Jesus
id: OMP:0005353
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased mating

decreased mating
type: Class
subclass of: altered mating
creation date: 2016-11-21T13:14:33Z
definition: An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control.
created by: Jesus
id: OMP:0005354
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased mating

abolished mating
type: Class
subclass of: decreased mating
creation date: 2016-11-21T13:15:43Z
definition: A decreased mating phenotype where sexual reproduction by conjugation is abolished.
created by: Jesus
id: OMP:0005355
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased mating phenotype where sexual reproduction by conjugation is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished mating

mating efficiency phenotype
type: Class
subclass of: sexual reproduction phenotype
creation date: 2016-11-21T13:27:01Z
definition: A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate.
created by: Jesus
id: OMP:0005356
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Depending on the assay used, a change in measured mating efficiency may reflect a change in conjugation frequency (see OMP:0007412 mating phenotype and its descendants) and/or a change in some other biological process such as sexual sporulation (see OMP:0007045 and its descendants). For this reason mating efficiency phenotype is not a child of mating phenotype, but instead a child of sexual reproduction phenotype (OMP:0007406).
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate.
database_cross_reference: FYPO:0001147
database_cross_reference: OMP:JG
annotated property: definition
annotated source: mating efficiency phenotype

altered mating efficiency
type: Class
subclass of: mating efficiency phenotype
creation date: 2016-11-21T13:29:32Z
definition: A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control.
created by: Jesus
id: OMP:0005357
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered mating efficiency

increased mating efficiency
type: Class
subclass of: altered mating efficiency
creation date: 2016-11-21T13:30:39Z
definition: A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control.
created by: Jesus
id: OMP:0005358
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased mating efficiency

decreased mating efficiency
type: Class
subclass of: altered mating efficiency
creation date: 2016-11-21T13:32:39Z
definition: A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control.
created by: Jesus
id: OMP:0005359
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased mating efficiency

abolished mating efficiency
type: Class
subclass of: decreased mating efficiency
creation date: 2016-11-21T13:33:33Z
definition: A decreased mating efficiency phenotype where mating is abolished.
created by: Jesus
id: OMP:0005360
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased mating efficiency phenotype where mating is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished mating efficiency

osmotaxis phenotype
type: Class
subclass of: taxis phenotype
creation date: 2016-12-20T12:48:52Z
definition: A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se.
created by: Jesus
id: OMP:0005361
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se.
database_cross_reference: OMP:JG
database_cross_reference: PMID:3059348
annotated property: definition
annotated source: osmotaxis phenotype

presence of osmotaxis
type: Class
subclass of: osmotaxis phenotype
creation date: 2016-12-20T12:51:45Z
definition: An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient.
created by: Jesus
id: OMP:0005362
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of osmotaxis

absence of osmotaxis
type: Class
subclass of: osmotaxis phenotype
creation date: 2016-12-20T12:52:21Z
definition: An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient.
created by: Jesus
id: OMP:0005363
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of osmotaxis

presence of positive osmotaxis
type: Class
subclass of: presence of osmotaxis
creation date: 2016-12-20T12:53:34Z
definition: A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration.
created by: Jesus
id: OMP:0005364
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of positive osmotaxis

presence of negative osmotaxis
type: Class
subclass of: presence of osmotaxis
creation date: 2016-12-20T12:54:30Z
definition: A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration.
created by: Jesus
id: OMP:0005365
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of negative osmotaxis

abolished osmotaxis
type: Class
subclass of: absence of osmotaxis
subclass of: decreased osmotaxis
creation date: 2016-12-20T12:59:07Z
definition: A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished.
created by: Jesus
id: OMP:0005366
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished osmotaxis

absence of negative osmotaxis
type: Class
subclass of: absence of osmotaxis
creation date: 2016-12-20T13:00:12Z
definition: An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis.
created by: Jesus
id: OMP:0005367
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of negative osmotaxis

abolished negative osmotaxis
type: Class
subclass of: absence of negative osmotaxis
subclass of: decreased negative osmotaxis
creation date: 2016-12-20T13:02:31Z
definition: A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished.
created by: Jesus
id: OMP:0005368
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished negative osmotaxis

absence of positive osmotaxis
type: Class
subclass of: absence of osmotaxis
creation date: 2016-12-20T13:03:16Z
definition: A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis.
created by: Jesus
id: OMP:0005369
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of positive osmotaxis

abolished positive osmotaxis
type: Class
subclass of: absence of positive osmotaxis
subclass of: decreased positive osmotaxis
creation date: 2016-12-20T13:04:08Z
definition: A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished.
created by: Jesus
id: OMP:0005370
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished positive osmotaxis

altered osmotaxis
type: Class
subclass of: osmotaxis phenotype
subclass of: altered taxis
creation date: 2016-12-20T13:05:17Z
definition: An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control.
created by: Jesus
id: OMP:0005371
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered osmotaxis

decreased osmotaxis
type: Class
subclass of: altered osmotaxis
creation date: 2016-12-20T13:06:09Z
definition: An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control.
created by: Jesus
id: OMP:0005372
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased osmotaxis

sporulation frequency phenotype
type: Class
subclass of: sporulation phenotype
subclass of: population phenotype
creation date: 2016-12-20T13:17:56Z
definition: A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions.
created by: Jesus
id: OMP:0005373
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: sporulation frequency phenotype

increased osmotaxis
type: Class
subclass of: altered osmotaxis
creation date: 2016-12-20T13:08:00Z
definition: An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control.
created by: Jesus
id: OMP:0005374
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased osmotaxis

increased negative osmotaxis
type: Class
subclass of: increased osmotaxis
creation date: 2016-12-20T13:08:34Z
definition: An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control.
created by: Jesus
id: OMP:0005375
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased negative osmotaxis

increased positive osmotaxis
type: Class
subclass of: increased osmotaxis
creation date: 2016-12-20T13:09:07Z
definition: An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control.
created by: Jesus
id: OMP:0005376
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased positive osmotaxis

sexual sporulation frequency
type: Class
subclass of: sporulation frequency phenotype
creation date: 2016-12-20T13:23:48Z
definition: A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions.
created by: Jesus
id: OMP:0005377
has_obo_namespace: microbial_phenotype
has_exact_synonym: sporulation efficiency

Axiom
database_cross_reference: APO:0000044
annotated target: sporulation efficiency
annotated source: sexual sporulation frequency
annotated property: has_exact_synonym

Axiom
annotated target: A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions.
database_cross_reference: APO:0000044
database_cross_reference: OMP:JG
annotated property: definition
annotated source: sexual sporulation frequency

altered sexual sporulation frequency
type: Class
subclass of: sexual sporulation frequency
creation date: 2016-12-20T13:27:44Z
definition: A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control.
created by: Jesus
id: OMP:0005378
has_exact_synonym: altered sexual sporulation efficiency
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered sexual sporulation frequency

increased sexual sporulation frequency
type: Class
subclass of: altered sexual sporulation frequency
creation date: 2016-12-20T13:32:18Z
definition: An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control.
created by: Jesus
id: OMP:0005379
has_exact_synonym: increased sexual sporulation efficiency
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased sexual sporulation frequency

decreased sexual sporulation frequency
type: Class
subclass of: altered sexual sporulation frequency
creation date: 2016-12-20T13:33:55Z
definition: An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control.
created by: Jesus
id: OMP:0005380
has_exact_synonym: decreased sexual sporulation efficiency
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased sexual sporulation frequency

abolished sexual sporulation frequency
type: Class
subclass of: decreased sexual sporulation frequency
creation date: 2016-12-20T13:35:03Z
definition: A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection.
created by: Jesus
id: OMP:0005381
has_exact_synonym: abolished sexual sporulation efficiency
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished sexual sporulation frequency

tail morphology phenotype
type: Class
subclass of: virion morphology phenotype
creation date: 2017-11-03T21:07:19Z
definition: A virion morphology phenotype that is referring to the form and structure of tails on viral particles.
created by: MiLaptop
id: OMP:0005382
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A virion morphology phenotype that is referring to the form and structure of tails on viral particles.
database_cross_reference: OMP:dr
annotated property: definition
annotated source: tail morphology phenotype

presence of tail
type: Class
subclass of: tail morphology phenotype
creation date: 2017-11-03T21:10:23Z
definition: A tail morphology phenotype where the virus has a tail present.
created by: MiLaptop
id: OMP:0005383
has_obo_namespace: microbial_phenotype

presence of short tail
type: Class
subclass of: presence of tail
creation date: 2017-11-03T21:15:15Z
definition: A tail length phenotype where the maximum length of the tail is 17 nm.
created by: MiLaptop
id: OMP:0005384
has_obo_namespace: microbial_phenotype

presence of normal tail
type: Class
subclass of: presence of tail
creation date: 2017-11-03T21:17:21Z
definition: A tail length phenotype ranging from 18 nm to 109 nm.
created by: MiLaptop
id: OMP:0005385
has_obo_namespace: microbial_phenotype

capsid morphology phenotype
type: Class
subclass of: virion morphology phenotype
creation date: 2017-11-03T21:01:58Z
definition: A virion morphology phenotype related to the form and structure of the capsid of the virion.
created by: MiLaptop
id: OMP:0005386
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

presence of long tail
type: Class
subclass of: presence of tail
creation date: 2017-11-03T21:19:23Z
definition: A tail length phenotype ranging from 110 nm to 300 nm.
created by: MiLaptop
id: OMP:0005387
has_obo_namespace: microbial_phenotype

presence of contractile tail
type: Class
subclass of: presence of tail
creation date: 2017-11-03T21:20:42Z
definition: A phage tail phenotype where the tail contracts to inject its DNA into the host.
created by: MiLaptop
id: OMP:0005388
has_obo_namespace: microbial_phenotype

presence of non-contractile tail
type: Class
subclass of: presence of tail
creation date: 2017-11-03T21:33:18Z
definition: A phage tail phenotype where the tail does not contract to inject its DNA into the host.
created by: MiLaptop
id: OMP:0005389
has_obo_namespace: microbial_phenotype

presence of a single tail
type: Class
subclass of: presence of tail
creation date: 2017-11-03T21:34:28Z
definition: A phage tail phenotype where only one tail per virion is present.
created by: MiLaptop
id: OMP:0005390
has_obo_namespace: microbial_phenotype

presence of multiple tails
type: Class
subclass of: presence of tail
creation date: 2017-11-03T21:35:33Z
definition: A phage tail phenotype where more than one tail per virion is present.
created by: MiLaptop
id: OMP:0005391
has_obo_namespace: microbial_phenotype

absence of tail
type: Class
subclass of: tail morphology phenotype
creation date: 2017-11-03T21:36:16Z
definition: A tail morphology phenotype where the virus has no tail.
created by: MiLaptop
id: OMP:0005392
has_obo_namespace: microbial_phenotype

pseudo tail morphology phenotype
type: Class
subclass of: virion morphology phenotype
creation date: 2017-11-03T21:39:58Z
definition: A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion.
created by: MiLaptop
id: OMP:0005393
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion.
database_cross_reference: OMP:dr
annotated property: definition
annotated source: pseudo tail morphology phenotype

polyhedral shape
type: Class
subclass of: capsid morphology phenotype
creation date: 2017-11-03T21:42:47Z
definition: A capsid morphology phenotype where the capsid is shaped like a polyhedron which is a solid formed by plane faces.
created by: MiLaptop
id: OMP:0005394
has_obo_namespace: microbial_phenotype

icosahedral capsid shape
type: Class
subclass of: polyhedral shape
creation date: 2017-11-03T21:45:08Z
definition: A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces.
created by: MiLaptop
id: OMP:0005395
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces.
database_cross_reference: OMP:dr
annotated property: definition
annotated source: icosahedral capsid shape

isometric capsid
type: Class
subclass of: polyhedral shape
creation date: 2017-11-03T21:52:04Z
definition: A capsid morphology phenotype where the capsid is shaped isometrically which is a shape that is characterized by equality of measure.
created by: MiLaptop
id: OMP:0005396
has_obo_namespace: microbial_phenotype

octahedral capsid
type: Class
subclass of: polyhedral shape
creation date: 2017-11-03T21:53:27Z
definition: A capsid morphology phenotype where the capsid is shaped like an octahedron which is a polyhedron with 8 plane faces.
created by: MiLaptop
id: OMP:0005397
has_obo_namespace: microbial_phenotype

dodecahedral capsid shape
type: Class
subclass of: polyhedral shape
creation date: 2017-11-03T21:55:20Z
definition: A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces.
created by: MiLaptop
id: OMP:0005398
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces.
database_cross_reference: OMP:dr
annotated property: definition
annotated source: dodecahedral capsid shape

secondary metabolite production phenotype
type: Class
subclass of: small molecule biosynthesis phenotype
creation date: 2015-06-09T15:06:53Z
definition: A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction.
id: OMP:0006000
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction.
database_cross_reference: APO:0000292
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: secondary metabolite production phenotype

altered chromosome segregation
type: Class
equivalent class: Class
  intersection of: chromosome segregation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: chromosome segregation phenotype
subclass of: altered biological process
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-07-24T14:14:37Z
definition: A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control.
id: OMP:0006001
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered chromosome segregation

altered homologous recombination
type: Class
subclass of: homologous recombination phenotype
creation date: 2014-07-24T15:04:15Z
definition: A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control.
id: OMP:0006002
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered homologous recombination

altered gene silencing
type: Class
subclass of: gene silencing phenotype
creation date: 2014-07-24T15:10:50Z
definition: A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control.
id: OMP:0006003
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered gene silencing

increased budding
type: Class
subclass of: altered budding
creation date: 2014-03-26T21:33:14Z
definition: An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control.
id: OMP:0006004
has_exact_synonym: increased budding index
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased budding

altered site-specific recombination
type: Class
subclass of: site-specific recombination phenotype
creation date: 2014-07-24T15:21:56Z
definition: A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control.
id: OMP:0006005
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered site-specific recombination

decreased budding
type: Class
subclass of: altered budding
creation date: 2014-03-26T21:33:14Z
definition: An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control.
id: OMP:0006006
has_exact_synonym: decreased budding index
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased budding

altered heterocyst formation
type: Class
subclass of: heterocyst formation phenotype
subclass of: altered cell development
creation date: 2014-07-24T16:24:44Z
definition: A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control.
id: OMP:0006007
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered heterocyst formation

photosynthesis phenotype
type: Class
subclass of: phototrophic phenotype
creation date: 2014-04-01T14:18:12Z
definition: A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules.
id: OMP:0006008
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: photosynthesis phenotype

altered myxospore formation
type: Class
equivalent class: Class
  intersection of: myxospore formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_process_quality
subclass of: myxospore formation phenotype
subclass of: altered asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: altered_process_quality
creation date: 2014-07-24T16:26:38Z
definition: A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control.
id: OMP:0006009
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered myxospore formation

altered pilus phenotype
type: Class
subclass of: pilus morphology phenotype
creation date: 2014-07-24T16:28:24Z
definition: A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control.
id: OMP:0006010
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered pilus phenotype

lantibiotic resistance phenotype
type: Class
subclass of: bacteriocin resistance phenotype
creation date: 2014-04-30T22:47:51Z
definition: A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid.
id: OMP:0006011
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: jonathanherrera
has_related_synonym: lantibiotic sensitivity phenotype
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid.
database_cross_reference: CHEBI:71644
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: lantibiotic resistance phenotype

decreased resistance to lantibiotic
type: Class
subclass of: altered lantibiotic resistance phenotype
creation date: 2014-04-30T22:48:59Z
definition: A lantibiotic resistance phenotype where resistance is decreased relative to a designated control.
id: OMP:0006012
has_related_synonym: increased sensitivity to lantibiotic
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A lantibiotic resistance phenotype where resistance is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased resistance to lantibiotic

altered transposable element transposition phenotype
type: Class
subclass of: transposable element transposition phenotype
creation date: 2014-07-24T16:30:53Z
definition: A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control.
id: OMP:0006013
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered transposable element transposition phenotype

increased resistance to lantibiotic
type: Class
subclass of: altered lantibiotic resistance phenotype
creation date: 2014-04-30T22:48:59Z
definition: A lantibiotic resistance phenotype where resistance is increased relative to a designated control.
id: OMP:0006014
has_related_synonym: decreased sensitivity to lantibiotic
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A lantibiotic resistance phenotype where resistance is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased resistance to lantibiotic

presence of transposable element transposition
type: Class
subclass of: transposable element transposition phenotype
creation date: 2014-07-24T16:34:28Z
definition: A transposable element transposition phenotype where a cell or cells have transposition of transposable elements.
id: OMP:0006015
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A transposable element transposition phenotype where a cell or cells have transposition of transposable elements.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: presence of transposable element transposition

absence of transposable element transposition
type: Class
subclass of: transposable element transposition phenotype
creation date: 2014-07-24T16:34:28Z
definition: A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements.
id: OMP:0006016
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: absence of transposable element transposition

altered aminoglycoside resistance
type: Class
subclass of: aminoglycoside antimicrobial agent resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:04:53Z
definition: An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control.
id: OMP:0006017
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered aminoglycoside resistance

altered aminopyrimidine resistance
type: Class
subclass of: aminopyrimidine resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:13:02Z
definition: An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control.
id: OMP:0006018
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered aminopyrimidine resistance

altered azole resistance
type: Class
subclass of: azole antimicrobial agent resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:20:23Z
definition: An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control.
id: OMP:0006019
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control.
database_cross_reference: OMp:JCH
annotated property: definition
annotated source: altered azole resistance

altered bacteriocin resistance
type: Class
subclass of: bacteriocin resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:21:28Z
definition: A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control.
id: OMP:0006020
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered bacteriocin resistance

altered beta-lactam resistance
type: Class
subclass of: beta-lactam resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:26:03Z
definition: A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control.
id: OMP:0006021
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered beta-lactam resistance

nutrient utilization phenotype
type: Class
subclass of: microbial phenotype
creation date: 2013-09-10T14:40:06Z
definition: A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture.
id: OMP:0006022
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release and capture.
database_cross_reference: ISBN:9780073402406
annotated property: definition
annotated source: nutrient utilization phenotype

carbon source utilization phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2013-09-10T17:51:21Z
definition: A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon.
has_narrow_synonym: N-acetyl glucosamine
id: OMP:0006023
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: acetate
has_narrow_synonym: glucosamine
has_narrow_synonym: glucose
has_narrow_synonym: glycerol
created by: jonathanherrera
has_narrow_synonym: maltose
has_obo_namespace: microbial_phenotype
has_narrow_synonym: succinate
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype related to the ability of a microbe to utilize a nutrient as a source of carbon.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: carbon source utilization phenotype

presence of organic carbon source utilization
type: Class
subclass of: carbon source utilization phenotype
creation date: 2013-09-10T18:39:02Z
definition: A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source.
id: OMP:0006024
has_exact_synonym: heterotrophy
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A carbon source utilization phenotype where a microorganism is able to utilize an organic molecule as its carbon source.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of organic carbon source utilization

altered chloramphenicol resistance
type: Class
subclass of: chloramphenicol resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:39:51Z
definition: A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control.
id: OMP:0006025
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered chloramphenicol resistance

nitrogen source utilization phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2013-09-10T17:51:21Z
definition: A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen.
has_narrow_synonym: NH4Cl (ammonia)
id: OMP:0006026
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nitrogen source utilization phenotype

bacteriocin resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2013-10-04T16:57:43Z
definition: An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species.
database_cross_reference: CHEBI:48081
id: OMP:0006027
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_related_synonym: bacteriocin sensitivity phenotype
has_narrow_synonym: colicins resistance phenotype
has_narrow_synonym: fusidic acid resistance phenotype
has_narrow_synonym: iantibiotic resistance phenotype
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_narrow_synonym: microcin resistance phenotype
has_narrow_synonym: nisin resistance phenotype
has_narrow_synonym: subtilin resistance phenotype
has_narrow_synonym: type A lantibiotic resistance phenotype
has_narrow_synonym: type B lantibiotic resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:71647
annotated target: type B lantibiotic resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:64627
annotated target: microcin resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

bacteriocin
type: Axiom
annotated target: CHEBI:48081
annotated source: bacteriocin resistance phenotype
annotated property: database_cross_reference

Axiom
database_cross_reference: Bactibase:BAC045
annotated target: subtilin resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: GO:0015468
annotated target: colicins resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:29013
annotated target: fusidic acid resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species.
database_cross_reference: CHEBI:48081
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: bacteriocin resistance phenotype

Axiom
database_cross_reference: ChEBI:71629
annotated target: nisin resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:71644
annotated target: iantibiotic resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:71645
annotated target: type A lantibiotic resistance phenotype
annotated source: bacteriocin resistance phenotype
annotated property: has_narrow_synonym

azole antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2013-10-10T19:15:32Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen.
database_cross_reference: CHEBI:68452
id: OMP:0006028
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen. A mancude ring has the maximum number of noncumulative double bonds, e.g. benzene, indole.
has_related_synonym: azole sensitivity phenotype
has_narrow_synonym: benomyl resistance phenotype
has_narrow_synonym: fluconazole resistance phenotype
has_narrow_synonym: itraconazole resistance phenotype
created by: jonathanherrera
has_narrow_synonym: ketoconazole resistance phenotype
has_narrow_synonym: miconazole resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: posaconazole resistance phenotype
has_narrow_synonym: thiabendazole resistance phenotype
has_narrow_synonym: triazole resistance phenotype
has_narrow_synonym: voriconazole resistance phenotype
in_subset: qc do not manually annotate

azole
type: Axiom
annotated target: CHEBI:68452
annotated source: azole antimicrobial agent resistance phenotype
annotated property: database_cross_reference

Axiom
database_cross_reference: CHEBI:6923
annotated target: miconazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen.
database_cross_reference: CHEBI:68452
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: azole antimicrobial agent resistance phenotype

Axiom
database_cross_reference: CHEBI:45979
annotated target: thiabendazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:46081
annotated target: fluconazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:47519
annotated target: ketoconazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:6076
annotated target: itraconazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:10023
annotated target: voriconazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:3015
annotated target: benomyl resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:38597
annotated target: triazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:64355
annotated target: posaconazole resistance phenotype
annotated source: azole antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

quinolone resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2013-10-10T19:15:32Z
definition: An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure.
database_cross_reference: CHEBI:23765
id: OMP:0006029
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Quinolones are a class of quinolines, which are aromatic heterocyclic compounds that contain a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring.
has_narrow_synonym: ciprofloxacin resistance phenotype
has_narrow_synonym: dibucaine resistance phenotype
has_narrow_synonym: doxorubicin resistance phenotype
created by: jonathanherrera
has_narrow_synonym: levofloxacin resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: nalidixic acid resistance phenotype
has_narrow_synonym: norfloxacin resistance phenotype
has_broad_synonym: quinolines
has_related_synonym: quinolone sensitivity phenotype
has_exact_synonym: streptonigrin
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:28748
annotated target: doxorubicin resistance phenotype
annotated source: quinolone resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:247956
annotated target: dibucaine resistance phenotype
annotated source: quinolone resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:63598
annotated target: levofloxacin resistance phenotype
annotated source: quinolone resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:100241
annotated target: ciprofloxacin resistance phenotype
annotated source: quinolone resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure.
database_cross_reference: CHEBI:23765
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: quinolone resistance phenotype

Axiom
database_cross_reference: CHEBI:100246
annotated target: norfloxacin resistance phenotype
annotated source: quinolone resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:26513
annotated target: quinolines
annotated source: quinolone resistance phenotype
annotated property: has_broad_synonym

Axiom
database_cross_reference: CHEBI:100147
annotated target: nalidixic acid resistance phenotype
annotated source: quinolone resistance phenotype
annotated property: has_narrow_synonym

quinolone
type: Axiom
annotated target: CHEBI:23765
annotated source: quinolone resistance phenotype
annotated property: database_cross_reference

Axiom
database_cross_reference: CHEBI:9287
annotated target: streptonigrin
annotated source: quinolone resistance phenotype
annotated property: has_exact_synonym

dinitrogen utilization phenotype
type: Class
subclass of: nitrogen source utilization phenotype
creation date: 2013-09-10T17:54:07Z
definition: A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen.
id: OMP:0006030
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_related_synonym: diatomic nitrogen utilization phenotype
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: nitrogen fixation phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: dinitrogen utilization phenotype

altered resistance to macrolide
type: Class
subclass of: macrolide resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:40:33Z
definition: A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control.
id: OMP:0006031
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered resistance to macrolide

altered pteridine resistance
type: Class
subclass of: pteridine resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-07-24T17:42:30Z
definition: A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control.
id: OMP:0006032
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered pteridine resistance

altered lifespan phenotype
type: Class
subclass of: lifespan phenotype
creation date: 2014-07-24T17:52:43Z
definition: An lifespan phenotype that is altered relative to a designated control.
id: OMP:0006033
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An lifespan phenotype that is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered lifespan phenotype

altered stress-induced mutagenesis
type: Class
subclass of: stress-induced mutagenesis phenotype
creation date: 2014-07-24T17:57:37Z
definition: A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control.
id: OMP:0006034
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered stress-induced mutagenesis

altered budding
type: Class
subclass of: budding phenotype
subclass of: altered asexual reproduction
creation date: 2014-07-24T18:10:38Z
definition: A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control.
id: OMP:0006035
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered budding

decreased resistance to macrolide
type: Class
subclass of: altered resistance to macrolide
creation date: 2013-10-11T17:35:04Z
definition: A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control.
id: OMP:0006036
has_related_synonym: increased sensitivity to macrolide
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased resistance to macrolide

increased resistance to macrolide
type: Class
subclass of: altered resistance to macrolide
creation date: 2013-10-11T17:35:04Z
definition: A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control.
id: OMP:0006037
has_related_synonym: decreased sensitivity to macrolide
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased resistance to macrolide

not resistant to macrolide
type: Class
subclass of: macrolide resistance phenotype
creation date: 2013-10-11T17:35:04Z
definition: A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds.
id: OMP:0006038
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: sensitivity to macrolide

Axiom
annotated target: A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: not resistant to macrolide

resistant to macrolide
type: Class
subclass of: macrolide resistance phenotype
creation date: 2013-10-11T17:35:04Z
definition: A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds.
id: OMP:0006039
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to macrolide

decreased resistance to quinolone
type: Class
subclass of: altered quinolone resistance
creation date: 2013-10-11T17:38:00Z
definition: A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control.
id: OMP:0006040
has_related_synonym: increased sensitivity to quinoline
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased resistance to quinolone

increased resistance to quinolone
type: Class
subclass of: altered quinolone resistance
creation date: 2013-10-11T17:38:00Z
definition: A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control.
id: OMP:0006041
has_related_synonym: decreased sensitivity to quinoline
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased resistance to quinolone

not resistant to quinolone
type: Class
subclass of: quinolone resistance phenotype
creation date: 2013-10-11T17:38:00Z
definition: A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds.
id: OMP:0006042
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: sensitivity to quinolone

Axiom
annotated target: A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds.
database_cross_reference: OMp:JCH
annotated property: definition
annotated source: not resistant to quinolone

resistant to quinolone
type: Class
subclass of: quinolone resistance phenotype
creation date: 2013-10-11T17:38:00Z
definition: A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds.
id: OMP:0006043
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to quinolone

decreased resistance to beta-lactam
type: Class
subclass of: altered beta-lactam resistance
creation date: 2013-10-11T17:40:34Z
definition: A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control.
id: OMP:0006044
has_related_synonym: increased sensitivity to beta-lactam
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased resistance to beta-lactam

increased resistance to beta-lactam compound
type: Class
subclass of: altered beta-lactam resistance
creation date: 2013-10-11T17:40:34Z
definition: A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control.
id: OMP:0006045
has_related_synonym: decreased sensitivity to beta-lactam
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased resistance to beta-lactam compound

not resistant to beta-lactam
type: Class
subclass of: beta-lactam resistance phenotype
creation date: 2013-10-11T17:40:34Z
definition: A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds.
id: OMP:0006046
has_related_synonym: beta-lactam sensitivity
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: not resistant to beta-lactam

resistant to beta-lactam
type: Class
subclass of: beta-lactam resistance phenotype
subclass of: resistant to an antimicrobial agent
creation date: 2013-10-11T17:40:34Z
definition: An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds.
id: OMP:0006047
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to beta-lactam

decreased resistance to bacteriocin
type: Class
subclass of: altered bacteriocin resistance
creation date: 2013-10-11T17:44:39Z
definition: An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control.
id: OMP:0006048
has_related_synonym: increased sensitivity to bacteriocin
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased resistance to bacteriocin

increased resistance to bacteriocin
type: Class
subclass of: altered bacteriocin resistance
creation date: 2013-10-11T17:44:39Z
definition: A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control.
id: OMP:0006049
has_related_synonym: decreased sensitivity to a bacteriocin
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased resistance to bacteriocin

not resistant to bacteriocin
type: Class
subclass of: bacteriocin resistance phenotype
creation date: 2013-10-11T17:44:39Z
definition: A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins.
id: OMP:0006050
has_related_synonym: bacteriocin sensitivity
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: not resistant to bacteriocin

resistant to bacteriocin
type: Class
subclass of: bacteriocin resistance phenotype
creation date: 2013-10-11T17:44:39Z
definition: A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins.
id: OMP:0006051
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to bacteriocin

decreased resistance to azole
type: Class
subclass of: altered azole resistance
creation date: 2013-10-11T17:45:44Z
definition: An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control.
id: OMP:0006052
has_related_synonym: increased sensitivity to azole
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to azole

increased resistance to azole compound
type: Class
subclass of: altered azole resistance
creation date: 2013-10-11T17:45:44Z
definition: An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control.
id: OMP:0006053
has_related_synonym: decreased sensitivity to azole
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to azole compound

not resistant to azole
type: Class
subclass of: azole antimicrobial agent resistance phenotype
creation date: 2013-10-11T17:45:44Z
definition: An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds.
id: OMP:0006054
has_related_synonym: azole sensitivity
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to azole

resistant to azole
type: Class
subclass of: azole antimicrobial agent resistance phenotype
creation date: 2013-10-11T17:45:44Z
definition: An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds.
id: OMP:0006055
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to azole

aminoglycoside antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2013-10-22T13:29:22Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars.
database_cross_reference: CHEBI:47779
id: OMP:0006056
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: amikacin resistance phenotype
has_related_synonym: aminoglycoside sensitivity phenotype
has_narrow_synonym: gentamicin resistance phenotype
has_narrow_synonym: hygromycin B resistance phenotype
created by: jonathanherrera
has_narrow_synonym: kanamycin resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: neomycin resistance phenotype
has_narrow_synonym: spectinomycin resistance phenotype
has_narrow_synonym: streptomycin resistance phenotype
has_narrow_synonym: tobramycin resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:2673
annotated target: amikacin resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:16976
annotated target: hygromycin B resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:17076
annotated target: streptomycin resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:6104
annotated target: kanamycin resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:28864
annotated target: tobramycin resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:32158
annotated target: spectinomycin resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:5312
annotated target: gentamicin resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to an aminoglycoside antibiotic. Aminoglycosides contain a cyclohexane ring with amino sugars.
database_cross_reference: CHEBI:47779
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: aminoglycoside antimicrobial agent resistance phenotype

Axiom
database_cross_reference: CHEBI:7508
annotated target: neomycin resistance phenotype
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

aminoglycoside
type: Axiom
annotated target: CHEBI:47779
annotated source: aminoglycoside antimicrobial agent resistance phenotype
annotated property: database_cross_reference

decreased resistance to aminoglycoside
type: Class
subclass of: altered aminoglycoside resistance
creation date: 2013-10-22T19:24:20Z
definition: An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control.
id: OMP:0006057
has_related_synonym: increased sensitivity to aminoglycoside
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased resistance to aminoglycoside

increased resistance to aminoglycoside
type: Class
subclass of: altered aminoglycoside resistance
creation date: 2013-10-22T19:24:20Z
definition: An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control.
id: OMP:0006058
has_related_synonym: decreased sensitivity to aminoglycoside
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased resistance to aminoglycoside

not resistant to aminoglycoside
type: Class
subclass of: aminoglycoside antimicrobial agent resistance phenotype
creation date: 2013-10-22T19:24:20Z
definition: An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides.
id: OMP:0006059
has_related_synonym: aminoglycoside sensitivity
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: not resistant to aminoglycoside

resistant to aminoglycoside
type: Class
subclass of: aminoglycoside antimicrobial agent resistance phenotype
creation date: 2013-10-22T19:24:20Z
definition: An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds.
id: OMP:0006060
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An aminoglycoside resistance phenotype where microbe is resistant to one or more aminoglycoside compounds.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to aminoglycoside

decreased resistance to tetracycline
type: Class
subclass of: altered tetracycline resistance
creation date: 2013-10-23T19:27:35Z
definition: A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control.
id: OMP:0006061
has_related_synonym: increased sensitivity to tetracycline
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased resistance to tetracycline

tetracycline resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2013-10-23T17:21:25Z
definition: An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton.
database_cross_reference: CHEBI:27902
id: OMP:0006062
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_broad_synonym: bacteriostatic resistance phenotype
has_narrow_synonym: chlortetracycline resistance phenotype
has_narrow_synonym: doxycycline resistance phenotype
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_narrow_synonym: minocycline resistance phenotype
has_narrow_synonym: oxytetracycline resistance phenotype
has_related_synonym: tetracycline sensitivity phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton.
database_cross_reference: CHEBI:27902
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: tetracycline resistance phenotype

Axiom
database_cross_reference: CHEBI:50845
annotated target: doxycycline resistance phenotype
annotated source: tetracycline resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:27701
annotated target: oxytetracycline resistance phenotype
annotated source: tetracycline resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:50694
annotated target: minocycline resistance phenotype
annotated source: tetracycline resistance phenotype
annotated property: has_narrow_synonym

increased resistance to tetracycline
type: Class
subclass of: altered tetracycline resistance
creation date: 2013-10-23T19:27:35Z
definition: A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control.
id: OMP:0006063
has_related_synonym: decreased sensitivity to tetracycline
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased resistance to tetracycline

not resistant to tetracycline
type: Class
subclass of: tetracycline resistance phenotype
creation date: 2013-10-23T19:27:35Z
definition: A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines.
id: OMP:0006064
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: sensitivity to tetracycline

Axiom
annotated target: A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: not resistant to tetracycline

resistant to tetracycline
type: Class
subclass of: tetracycline resistance phenotype
creation date: 2013-10-23T19:27:35Z
definition: A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds.
id: OMP:0006065
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to tetracycline

chloramphenicol resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2013-10-24T12:57:25Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions.
database_cross_reference: CHEBI:17698
id: OMP:0006066
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_related_synonym: chloramphenicol sensitivity phenotype
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions.
database_cross_reference: CHEBI:17698
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: chloramphenicol resistance phenotype

chloramphenicol
type: Axiom
annotated target: CHEBI:17698
annotated source: chloramphenicol resistance phenotype
annotated property: database_cross_reference

decreased resistance to chloramphenicol
type: Class
subclass of: altered chloramphenicol resistance
creation date: 2013-10-24T19:41:11Z
definition: A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control.
id: OMP:0006067
has_related_synonym: increased sensitivity to chloramphenicol
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased resistance to chloramphenicol

increased resistance to chloramphenicol
type: Class
subclass of: altered chloramphenicol resistance
creation date: 2013-10-24T19:41:11Z
definition: A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control.
id: OMP:0006068
has_exact_synonym: decreased sensitivity to chloramphenicol
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased resistance to chloramphenicol

not resistant to chloramphenicol
type: Class
subclass of: chloramphenicol resistance phenotype
creation date: 2013-10-24T19:41:11Z
definition: A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol.
id: OMP:0006069
has_related_synonym: chloramphenicol sensitivity
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: not resistant to chloramphenicol

resistant to chloramphenicol
type: Class
subclass of: chloramphenicol resistance phenotype
creation date: 2013-10-24T19:41:11Z
definition: A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol.
id: OMP:0006070
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to chloramphenicol

altered mutation frequency
type: Class
subclass of: mutation frequency phenotype
creation date: 2014-07-24T18:18:59Z
definition: A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control.
id: OMP:0006071
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered mutation frequency

not resistant to lantibiotic
type: Class
subclass of: lantibiotic resistance phenotype
creation date: 2014-04-30T22:48:59Z
definition: A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics.
id: OMP:0006072
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: sensitive to lantibiotic

Axiom
annotated target: A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: not resistant to lantibiotic

resistant to lantibiotic
type: Class
subclass of: lantibiotic resistance phenotype
creation date: 2014-04-30T22:48:59Z
definition: A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds.
id: OMP:0006073
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: resistant to lantibiotic

increased resistance to pteridine
type: Class
subclass of: altered pteridine resistance
creation date: 2014-05-12T13:04:39Z
definition: A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control.
id: OMP:0006074
has_related_synonym: decreased sensitivity to pteridine
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control.
database_cross_reference: CHEBI:27601
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to pteridine

not resistant to pteridine
type: Class
subclass of: pteridine resistance phenotype
creation date: 2014-05-12T13:04:40Z
definition: A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds.
id: OMP:0006075
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: sensitivity to pteridine

Axiom
annotated target: A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds.
database_cross_reference: CHEBI:27601
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: not resistant to pteridine

resistant to pteridine
type: Class
subclass of: pteridine resistance phenotype
creation date: 2014-05-12T13:04:40Z
definition: A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds.
id: OMP:0006076
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds.
database_cross_reference: CHEBI:27601
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: resistant to pteridine

altered catalase test result
type: Class
subclass of: catalase test phenotype
subclass of: altered differential test result
creation date: 2014-07-15T14:55:03Z
definition: A catalase test phenotype where catalase activity is altered relative to a designated control.
id: OMP:0006077
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A catalase test phenotype where catalase activity is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered catalase test result

decarboxylase negative
type: Class
subclass of: decarboxylase test phenotype
creation date: 2014-07-15T19:59:58Z
definition: A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity.
id: OMP:0006078
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decarboxylase negative

altered decarboxylase test result
type: Class
subclass of: decarboxylase test phenotype
subclass of: altered differential test result
creation date: 2014-07-15T19:59:58Z
definition: A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control.
id: OMP:0006079
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered decarboxylase test result

decarboxylase positive
type: Class
subclass of: decarboxylase test phenotype
creation date: 2014-07-15T19:59:58Z
definition: A decarboxylase test phenotype where an organism exhibits decarboxylase activity.
id: OMP:0006080
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decarboxylase test phenotype where an organism exhibits decarboxylase activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decarboxylase positive

increased decarboxylase activity
type: Class
subclass of: altered decarboxylase test result
creation date: 2014-07-15T20:00:41Z
definition: An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control.
id: OMP:0006081
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased decarboxylase activity

decreased decarboxylase activity
type: Class
subclass of: altered decarboxylase test result
creation date: 2014-07-15T20:00:41Z
definition: An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control.
id: OMP:0006082
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased decarboxylase activity

altered oxidase test result
type: Class
subclass of: oxidase test phenotype
subclass of: altered differential test result
creation date: 2014-07-15T20:06:25Z
definition: An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control.
id: OMP:0006083
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered oxidase test result

oxidase negative
type: Class
subclass of: oxidase test phenotype
creation date: 2014-07-15T20:06:25Z
definition: An oxidase test phenotype where an organism doesn't exhibit oxidase activity.
id: OMP:0006084
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: oxidase deficient

Axiom
annotated target: An oxidase test phenotype where an organism doesn't exhibit oxidase activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: oxidase negative

oxidase positive
type: Class
subclass of: oxidase test phenotype
creation date: 2014-07-15T20:06:25Z
definition: An oxidase test phenotype where an organism exhibits oxidase activity.
id: OMP:0006085
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An oxidase test phenotype where an organism exhibits oxidase activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: oxidase positive

increased oxidase activity
type: Class
subclass of: altered oxidase test result
creation date: 2014-07-15T20:06:48Z
definition: An altered oxidase test phenotype where oxidase activity is increased relative to a designated control.
id: OMP:0006086
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered oxidase test phenotype where oxidase activity is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased oxidase activity

decreased oxidase activity
type: Class
subclass of: altered oxidase test result
creation date: 2014-07-15T20:06:48Z
definition: An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control.
id: OMP:0006087
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased oxidase activity

altered urease test result
type: Class
subclass of: urease test phenotype
subclass of: altered differential test result
creation date: 2014-07-15T20:07:31Z
definition: A urease test phenotype where urease activity is altered relative to a designated control.
id: OMP:0006088
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A urease test phenotype where urease activity is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered urease test result

urease positive
type: Class
subclass of: urease test phenotype
creation date: 2014-07-15T20:07:31Z
definition: A urease test phenotype where an organism exhibits urease activity.
id: OMP:0006089
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A urease test phenotype where an organism exhibits urease activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: urease positive

urease negative
type: Class
subclass of: urease test phenotype
creation date: 2014-07-15T20:07:31Z
definition: A urease test phenotype where an organism doesn't exhibit urease activity.
id: OMP:0006090
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_related_synonym: urease deficient

Axiom
annotated target: A urease test phenotype where an organism doesn't exhibit urease activity.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: urease negative

increased urease activity
type: Class
subclass of: altered urease test result
creation date: 2014-07-15T20:07:54Z
definition: An altered urease activity phenotype where urease activity is increased relative to a designated control.
id: OMP:0006091
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered urease activity phenotype where urease activity is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased urease activity

decreased urease activity
type: Class
subclass of: altered urease test result
creation date: 2014-07-15T20:07:54Z
definition: An altered urease activity phenotype where there urease activity is decreased relative to a designated control.
id: OMP:0006092
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered urease activity phenotype where there urease activity is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased urease activity

altered quorum sensing phenotype
type: Class
subclass of: quorum sensing phenotype
creation date: 2014-07-24T18:43:39Z
definition: A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control.
id: OMP:0006093
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered quorum sensing phenotype

abolished decarboxylase activity
type: Class
subclass of: decarboxylase negative
subclass of: decreased decarboxylase activity
creation date: 2014-07-24T20:05:39Z
definition: A decreased decarboxylase activity phenotype where decarboxylase activity is abolished.
id: OMP:0006094
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased decarboxylase activity phenotype where decarboxylase activity is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished decarboxylase activity

abolished enzymatic activity
type: Class
subclass of: decreased catalytic activity
subclass of: absence of enzymatic activity
creation date: 2014-07-24T20:09:28Z
definition: A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished.
id: OMP:0006095
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished enzymatic activity

abolished oxidase activity
type: Class
subclass of: oxidase negative
subclass of: decreased oxidase activity
creation date: 2014-07-24T20:11:44Z
definition: A decreased oxidase activity phenotype where oxidase activity is abolished.
id: OMP:0006096
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased oxidase activity phenotype where oxidase activity is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished oxidase activity

abolished urease activity
type: Class
subclass of: urease negative
subclass of: decreased urease activity
creation date: 2014-07-24T20:17:01Z
definition: A decreased urease activity phenotype where urease activity is abolished.
id: OMP:0006097
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased urease activity phenotype where urease activity is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished urease activity

abolished aerotaxis
type: Class
subclass of: absence of aerotaxis
subclass of: decreased aerotaxis
creation date: 2014-07-24T20:18:01Z
definition: A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished.
id: OMP:0006098
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished aerotaxis

abolished budding
type: Class
subclass of: decreased budding
subclass of: absence of budding
creation date: 2014-07-25T11:08:59Z
definition: A decreased budding phenotype where the fraction of budding cells is decreased to zero.
id: OMP:0006099
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased budding phenotype where the fraction of budding cells is decreased to zero.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished budding

abolished motility by swimming
type: Class
subclass of: abolished motility
subclass of: decreased motility by swimming
subclass of: absence of motility by swimming
creation date: 2014-08-15T19:12:43Z
definition: A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished.
id: OMP:0006100
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished motility by swimming

abolished caffeine resistance
type: Class
subclass of: not resistant to caffeine
subclass of: decreased caffeine resistance
creation date: 2014-07-25T11:40:57Z
definition: A caffeine resistance phenotype where resistance to caffeine is abolished.
id: OMP:0006101
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A caffeine resistance phenotype where resistance to caffeine is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished caffeine resistance

abolished capsule formation
type: Class
subclass of: decreased amount of capsule
subclass of: absence of capsule
creation date: 2014-07-25T11:52:24Z
definition: A decreased amount of capsule phenotype where capsule is abolished.
id: OMP:0006102
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased amount of capsule phenotype where capsule is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished capsule formation

abolished organic carbon source utilization
type: Class
subclass of: decreased organic carbon source utilization
subclass of: absence of organic carbon source utilization
creation date: 2014-07-25T11:54:11Z
definition: A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished.
id: OMP:0006103
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased carbon source utilization phenotype where the ability to utilize an organic carbon source is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished organic carbon source utilization

abolished catalase activity
type: Class
subclass of: decreased catalase activity
subclass of: catalase negative
creation date: 2014-07-25T11:59:12Z
definition: A decreased catalase activity phenotype where catalase activity is abolished.
id: OMP:0006104
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased catalase activity phenotype where catalase activity is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished catalase activity

antimicrobial peptide production phenotype
type: Class
subclass of: secondary metabolite production phenotype
creation date: 2015-06-09T15:14:37Z
definition: A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa.
id: OMP:0006105
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa.
database_cross_reference: GO:0000276
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: antimicrobial peptide production phenotype

altered antimicrobial peptide production
type: Class
subclass of: antimicrobial peptide production phenotype
creation date: 2015-06-09T15:16:13Z
definition: An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control.
id: OMP:0006106
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control.
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: altered antimicrobial peptide production

presence of outer membrane vesicles
type: Class
subclass of: outer membrane vesicles phenotype
creation date: 2014-07-28T18:19:45Z
definition: A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles.
id: OMP:0006107
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
has_exact_synonym: vesiculation

Axiom
annotated target: A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: presence of outer membrane vesicles

abolished chemotaxis
type: Class
subclass of: absence of chemotaxis
subclass of: decreased chemotaxis
creation date: 2014-07-25T12:11:10Z
definition: A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished.
id: OMP:0006108
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished chemotaxis

absence of outer membrane vesicles
type: Class
subclass of: outer membrane vesicles phenotype
creation date: 2014-07-28T18:19:45Z
definition: A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles.
id: OMP:0006109
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of outer membrane vesicles

abolished endospore formation
type: Class
equivalent class: Class
  intersection of: decreased endospore formation
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: decreased endospore formation
subclass of: absence of endospore formation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2014-07-25T12:21:50Z
definition: A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished.
id: OMP:0006110
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished endospore formation

abolished chromosome segregation
type: Class
subclass of: decreased frequency of chromosome missegregation
subclass of: absence of chromosome segregation
creation date: 2014-07-25T12:24:27Z
definition: A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished.
id: OMP:0006111
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished chromosome segregation

abolished gene silencing
type: Class
subclass of: decreased frequency of gene silencing
subclass of: absence of gene silencing
creation date: 2014-07-25T12:40:10Z
definition: A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished.
id: OMP:0006112
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished gene silencing

abolished homologous recombination
type: Class
subclass of: decreased frequency of homologous recombination
subclass of: absence of homologous recombination
creation date: 2014-07-25T12:45:20Z
definition: A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished.
id: OMP:0006113
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished homologous recombination

abolished site-specific recombination
type: Class
subclass of: decreased frequency of site-specific recombination
subclass of: absence of site-specific recombination
creation date: 2014-07-25T12:47:43Z
definition: A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished.
id: OMP:0006114
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished site-specific recombination

abolished gene expression
type: Class
subclass of: decreased gene expression
creation date: 2014-07-25T12:50:04Z
definition: A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control.
id: OMP:0006115
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished gene expression

abolished population growth at acidic pH
type: Class
subclass of: decreased population growth at acidic pH
creation date: 2014-07-25T12:58:01Z
definition: An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished.
id: OMP:0006116
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered population growth phenotype where growth of a microbial population at acidic pH (< pH 7) is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished population growth at acidic pH

abolished population growth at alkaline pH
type: Class
subclass of: decreased population growth at alkaline pH
creation date: 2014-07-25T13:02:17Z
definition: An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished.
id: OMP:0006117
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered population growth phenotype where growth of a microbial population at alkaline pH (> pH 7) is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished population growth at alkaline pH

decreased antimicrobial peptide production
type: Class
subclass of: altered antimicrobial peptide production
creation date: 2015-06-09T15:17:23Z
definition: An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control.
id: OMP:0006118
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control.
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: decreased antimicrobial peptide production

abolished hemolysis
type: Class
subclass of: absence of hemolysis
subclass of: decreased hemolysis
creation date: 2014-07-25T13:17:12Z
definition: A decreased hemolysis phenotype where hemolysis is abolished.
id: OMP:0006119
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased hemolysis phenotype where hemolysis is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished hemolysis

abolished heterocyst formation
type: Class
subclass of: absence of heterocysts
subclass of: decreased heterocyst formation
creation date: 2014-07-25T13:19:17Z
definition: A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished.
id: OMP:0006120
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased heterocyst formation phenotype where the ability to form a heterocyst is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished heterocyst formation

abolished induced expression of the SOS response
type: Class
subclass of: absence of an SOS response
subclass of: decreased induced expression of the SOS response
creation date: 2014-07-25T13:22:37Z
definition: A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished.
id: OMP:0006121
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished induced expression of the SOS response

abolished uninduced expression of the SOS response
type: Class
subclass of: decreased basal expression of the SOS response
creation date: 2014-07-25T13:24:16Z
definition: A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished.
id: OMP:0006122
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished uninduced expression of the SOS response

abolished mitotic recombination
type: Class
subclass of: decreased mitotic recombination
creation date: 2014-07-25T13:27:32Z
definition: A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished.
id: OMP:0006123
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished mitotic recombination

abolished mutation frequency
type: Class
creation date: 2014-07-25T14:05:31Z
definition: A decreased mutation frequency phenotype where mutations no longer occur. **This term was made obsolete because it describes a phenotype that is unlikely to occur in nature.
id: OMP:0006124
comment: This term was made obsolete because it describes a phenotype that is unlikely to occur in nature.
created by: jonathanherrera
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: A decreased mutation frequency phenotype where mutations no longer occur. **This term was made obsolete because it describes a phenotype that is unlikely to occur in nature.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished mutation frequency

abolished myxospore formation
type: Class
equivalent class: Class
  intersection of: decreased myxospore formation
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: absence of myxospore formation
subclass of: decreased myxospore formation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2014-07-25T14:07:02Z
definition: A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished.
id: OMP:0006125
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished myxospore formation

altered DNA supercoiling
type: Class
subclass of: DNA supercoiling phenotype
creation date: 2014-07-25T14:11:37Z
definition: A DNA supercoiling phenotype where supercoiling is altered relative to a designated control.
id: OMP:0006126
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A DNA supercoiling phenotype where supercoiling is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered DNA supercoiling

abolished negative DNA supercoiling
type: Class
subclass of: decreased negative supercoiling
subclass of: absence of negative supercoiling
creation date: 2014-07-25T14:16:09Z
definition: A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished.
id: OMP:0006127
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished negative DNA supercoiling

abolished positive DNA supercoiling
type: Class
subclass of: absence of positive supercoiling
subclass of: decreased positive supercoiling
creation date: 2014-07-25T14:16:27Z
definition: A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished.
id: OMP:0006128
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished positive DNA supercoiling

absence of negative supercoiling
type: Class
subclass of: DNA supercoiling phenotype
creation date: 2014-07-25T14:32:08Z
definition: A DNA supercoiling phenotype where negative supercoiling is absent.
id: OMP:0006129
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A DNA supercoiling phenotype where negative supercoiling is absent.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of negative supercoiling

absence of positive supercoiling
type: Class
subclass of: DNA supercoiling phenotype
creation date: 2014-07-25T14:32:42Z
definition: A DNA supercoiling phenotype where positive supercoiling is absent.
id: OMP:0006130
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A DNA supercoiling phenotype where positive supercoiling is absent.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of positive supercoiling

abolished flagella
type: Class
subclass of: absence of flagellum
subclass of: decreased number of flagella
creation date: 2014-07-25T14:43:31Z
definition: A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero.
id: OMP:0006131
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished flagella

abolished number of pili
type: Class
subclass of: decreased number of pili
subclass of: absence of pilus
creation date: 2014-07-25T14:46:12Z
definition: A decreased number of pili phenotype where the number of pili is decreased to zero.
id: OMP:0006132
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased number of pili phenotype where the number of pili is decreased to zero.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished number of pili

abolished purine requirement
type: Class
subclass of: decreased purine requirement
creation date: 2014-07-25T14:47:24Z
definition: A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished.
id: OMP:0006133
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished purine requirement

abolished quorum sensing
type: Class
subclass of: absence of quorum sensing
subclass of: decreased quorum sensing
creation date: 2014-07-25T14:49:11Z
definition: A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished.
id: OMP:0006134
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished quorum sensing

abolished biofilm formation
type: Class
subclass of: decreased biofilm formation
subclass of: absence of biofilm formation
creation date: 2014-07-25T14:50:55Z
definition: A decreased biofilm formation phenotype where the ability to form a biofilm is abolished.
id: OMP:0006135
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased biofilm formation phenotype where the ability to form a biofilm is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished biofilm formation

abolished transposition
type: Class
subclass of: decreased rate of transposable element transposition
subclass of: absence of transposable element transposition
creation date: 2014-07-25T14:52:06Z
definition: A decreased rate of transposition phenotype where the ability to perform transposition is abolished.
id: OMP:0006136
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased rate of transposition phenotype where the ability to perform transposition is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished transposition

abolished resistance to aminoglycoside
type: Class
subclass of: decreased resistance to aminoglycoside
subclass of: not resistant to aminoglycoside
creation date: 2014-07-25T14:54:43Z
definition: A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished.
id: OMP:0006137
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to aminoglycoside

abolished resistance to aminopyrimidine
type: Class
subclass of: decreased resistance to aminopyrimidine
subclass of: not resistant to aminopyrimidine
creation date: 2014-07-25T14:59:06Z
definition: A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished.
id: OMP:0006138
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to aminopyrimidine

abolished resistance to azole
type: Class
subclass of: decreased resistance to azole
subclass of: not resistant to azole
creation date: 2014-07-25T15:00:48Z
definition: A decreased resistance to azole phenotype where resistance to azole is abolished.
id: OMP:0006139
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to azole phenotype where resistance to azole is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to azole

abolished resistance to bacteriocin
type: Class
subclass of: decreased resistance to bacteriocin
subclass of: not resistant to bacteriocin
creation date: 2014-07-25T15:02:13Z
definition: A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished.
id: OMP:0006140
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to bacteriocin

abolished resistance to beta-lactam
type: Class
subclass of: decreased resistance to beta-lactam
subclass of: not resistant to beta-lactam
creation date: 2014-07-25T15:04:08Z
definition: A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished.
id: OMP:0006141
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished.
database_cross_reference: OMP:JCh
annotated property: definition
annotated source: abolished resistance to beta-lactam

abolished resistance to chloramphenicol
type: Class
subclass of: decreased resistance to chloramphenicol
subclass of: not resistant to chloramphenicol
creation date: 2014-07-25T15:05:24Z
definition: A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished.
id: OMP:0006142
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to chloramphenicol

abolished resistance to lantibiotic
type: Class
subclass of: decreased resistance to lantibiotic
subclass of: not resistant to lantibiotic
creation date: 2014-07-25T15:07:57Z
definition: A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished.
id: OMP:0006143
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished.
database_cross_reference: OMP:JCh
annotated property: definition
annotated source: abolished resistance to lantibiotic

abolished resistance to macrolide
type: Class
subclass of: decreased resistance to macrolide
subclass of: not resistant to macrolide
creation date: 2014-07-25T15:09:24Z
definition: A decreased resistance to macrolide phenotype where resistance to macrolides is abolished.
id: OMP:0006144
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to macrolide phenotype where resistance to macrolides is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to macrolide

abolished resistance to pteridine
type: Class
subclass of: not resistant to pteridine
subclass of: decreased resistance to pteridine
creation date: 2014-07-25T15:11:04Z
definition: A decreased resistance to pteridine phenotype where resistance to pteridine is abolished.
id: OMP:0006145
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to pteridine phenotype where resistance to pteridine is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to pteridine

abolished resistance to quinolone
type: Class
subclass of: decreased resistance to quinolone
subclass of: not resistant to quinolone
creation date: 2014-07-25T15:12:28Z
definition: A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished.
id: OMP:0006146
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to quinolone

abolished resistance to tetracycline
type: Class
subclass of: decreased resistance to tetracycline
subclass of: not resistant to tetracycline
creation date: 2014-07-25T15:18:09Z
definition: A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished.
id: OMP:0006147
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished resistance to tetracycline

abolished stress-induced mutagenesis
type: Class
subclass of: decreased stress-induced mutagenesis
subclass of: absence of stress-induced mutagenesis
creation date: 2014-07-25T15:19:48Z
definition: A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished.
id: OMP:0006148
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished stress-induced mutagenesis

abolished utilization of dinitrogen
type: Class
subclass of: decreased utilization of dinitrogen
subclass of: absence of dinitrogen utilization
creation date: 2014-07-25T15:22:06Z
definition: A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished.
id: OMP:0006149
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished utilization of dinitrogen

abolished utilization of inorganic nitrogen
type: Class
subclass of: decreased utilization of inorganic nitrogen source
subclass of: absence of inorganic nitrogen utilization
creation date: 2014-07-25T15:23:03Z
definition: A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen.
id: OMP:0006150
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished utilization of inorganic nitrogen

abolished utilization of inorganic phosphorus
type: Class
subclass of: decreased utilization of inorganic phosphorus source
creation date: 2014-07-25T15:31:15Z
definition: A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished.
id: OMP:0006151
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished utilization of inorganic phosphorus

abolished utilization of inorganic sulfur
type: Class
subclass of: decreased utilization of inorganic sulfur
subclass of: absence of inorganic sulfur utilization
creation date: 2014-07-25T15:33:11Z
definition: A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished.
id: OMP:0006152
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished utilization of inorganic sulfur

abolished utilization of organic nitrogen
type: Class
subclass of: decreased organic nitrogen source utilization
creation date: 2014-07-25T15:36:09Z
definition: An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished.
id: OMP:0006153
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished utilization of organic nitrogen

abolished utilization of organic phosphorus
type: Class
subclass of: decreased utilization of organic phosphorus source
creation date: 2014-07-25T15:37:42Z
definition: A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished.
id: OMP:0006154
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished utilization of organic phosphorus

abolished utilization of organic sulfur
type: Class
subclass of: decreased utilization of organic sulfur source
subclass of: absence of organic sulfur utilization
creation date: 2014-07-25T15:40:13Z
definition: A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished.
id: OMP:0006155
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished utilization of organic sulfur

altered outer membrane vesicles
type: Class
subclass of: outer membrane vesicles phenotype
creation date: 2014-07-28T18:44:09Z
definition: An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control.
id: OMP:0006156
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered outer membrane vesicles

abolished vitamin/enzyme cofactor requirement
type: Class
subclass of: decreased vitamin/enzyme cofactor requirement
creation date: 2014-07-25T15:43:18Z
definition: A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished.
id: OMP:0006157
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished vitamin/enzyme cofactor requirement

increased outer membrane vesicle production
type: Class
subclass of: altered outer membrane vesicle production
creation date: 2014-07-28T18:45:05Z
definition: An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control.
id: OMP:0006158
has_exact_synonym: hyper-vesiculating
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased outer membrane vesicle production

decreased outer membrane vesicle production
type: Class
subclass of: altered outer membrane vesicle production
creation date: 2014-07-28T18:45:05Z
definition: An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control.
id: OMP:0006159
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased outer membrane vesicle production

abolished outer membrane vesicle
type: Class
subclass of: absence of outer membrane vesicles
subclass of: decreased outer membrane vesicle production
creation date: 2014-07-28T20:49:39Z
definition: A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished.
id: OMP:0006160
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished outer membrane vesicle

altered endospore formation
type: Class
equivalent class: Class
  intersection of: endospore formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: endospore formation phenotype
subclass of: altered asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-07-29T15:37:45Z
definition: A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control.
id: OMP:0006161
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered endospore formation

altered nanotube phenotype
type: Class
subclass of: nanotube phenotype
creation date: 2014-07-29T18:03:06Z
definition: A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control.
id: OMP:0006162
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered nanotube phenotype

presence of heme utilization
type: Class
subclass of: heme utilization phenotype
creation date: 2014-08-05T13:35:01Z
definition: A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron.
id: OMP:0006163
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: presence of heme utilization

altered colony size phenotype
type: Class
subclass of: colony size phenotype
subclass of: altered colony morphology
creation date: 2014-08-05T13:44:09Z
definition: An colony size phenotype where size is altered relative to a designated control.
id: OMP:0006164
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An colony size phenotype where size is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered colony size phenotype

cylindrical akinete
type: Class
subclass of: akinete morphology phenotype
creation date: 2014-08-06T17:30:58Z
definition: An akinete morphology phenotype where the organism forms a cylindrical akinete.
id: OMP:0006165
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An akinete morphology phenotype where the organism forms a cylindrical akinete.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: cylindrical akinete

presence of binary fission
type: Class
subclass of: binary fission phenotype
creation date: 2014-08-08T15:51:18Z
definition: A binary fission phenotype where an organism multiplies by the process of binary fission.
id: OMP:0006166
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A binary fission phenotype where an organism multiplies by the process of binary fission.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: presence of binary fission

abolished motility by swarming
type: Class
subclass of: abolished motility
subclass of: decreased motility by swarming
subclass of: absence of motility by swarming
creation date: 2014-08-13T17:25:47Z
definition: A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished.
id: OMP:0006167
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished motility by swarming

altered binary fission
type: Class
subclass of: binary fission phenotype
subclass of: altered asexual reproduction
creation date: 2014-08-08T15:59:42Z
definition: A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control.
id: OMP:0006168
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered binary fission

increased binary fission
type: Class
subclass of: altered binary fission
creation date: 2014-08-08T16:01:46Z
definition: An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control.
id: OMP:0006169
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased binary fission

decreased binary fission
type: Class
subclass of: altered binary fission
creation date: 2014-08-08T16:01:46Z
definition: An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control.
id: OMP:0006170
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased binary fission

abolished binary fission
type: Class
subclass of: decreased binary fission
subclass of: absence of binary fission
creation date: 2014-08-08T16:01:54Z
definition: A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished.
id: OMP:0006171
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished binary fission

increased antimicrobial peptide production
type: Class
subclass of: altered antimicrobial peptide production
creation date: 2015-06-09T15:17:53Z
definition: An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control.
id: OMP:0006172
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control.
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: increased antimicrobial peptide production

presence of multiple fission
type: Class
subclass of: multiple fission phenotype
creation date: 2014-08-08T16:42:12Z
definition: A multiple fission phenotype where an organism reproduces by the process of multiple fission.
id: OMP:0006173
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A multiple fission phenotype where an organism reproduces by the process of multiple fission.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: presence of multiple fission

altered multiple fission
type: Class
subclass of: multiple fission phenotype
subclass of: altered asexual reproduction
creation date: 2014-08-08T16:42:12Z
definition: A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control.
id: OMP:0006174
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered multiple fission

decreased multiple fission
type: Class
subclass of: altered multiple fission
creation date: 2014-08-08T16:46:45Z
definition: An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control.
id: OMP:0006175
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased multiple fission

increased multiple fission
type: Class
subclass of: altered multiple fission
creation date: 2014-08-08T16:46:45Z
definition: An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control.
id: OMP:0006176
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased multiple fission

abolished multiple fission
type: Class
subclass of: decreased multiple fission
subclass of: absence of multiple fission
creation date: 2014-08-08T16:49:27Z
definition: A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished.
id: OMP:0006177
created by: jonathanherrera
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished multiple fission

abolished antimicrobial peptide production
type: Class
subclass of: decreased antimicrobial peptide production
subclass of: absence of antimicrobial peptide production
creation date: 2015-06-09T15:18:24Z
definition: An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished.
id: OMP:0006178
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished.
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: abolished antimicrobial peptide production

presence of antimicrobial peptide production
type: Class
subclass of: antimicrobial peptide production phenotype
creation date: 2015-06-09T15:19:02Z
definition: An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide.
id: OMP:0006179
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide.
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: presence of antimicrobial peptide production

absence of antimicrobial peptide production
type: Class
subclass of: antimicrobial peptide production phenotype
creation date: 2015-06-09T15:19:38Z
definition: An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide.
id: OMP:0006180
has_obo_namespace: microbial_phenotype
created by: tkveton

Axiom
annotated target: An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide.
database_cross_reference: OMP:TCK
annotated property: definition
annotated source: absence of antimicrobial peptide production

abolished motility
type: Class
equivalent class: Class
  intersection of: decreased motility
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: decreased motility
subclass of: absence of motility
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2014-06-29T14:10:40Z
definition: A decreased motility phenotype where the ability of a microbe to be motile is abolished.
id: OMP:0007000
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased motility phenotype where the ability of a microbe to be motile is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished motility

altered motility
type: Class
equivalent class: Class
  intersection of: motility phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: motility phenotype
subclass of: altered microbial phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-04-24T17:38:06Z
definition: A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control.
id: OMP:0007001
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered motility

decreased positive supercoiling
type: Class
subclass of: altered DNA supercoiling
creation date: 2013-09-05T16:08:29Z
definition: An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control.
id: OMP:0007002
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: decreased positive supercoiling

increased positive supercoiling
type: Class
subclass of: altered DNA supercoiling
creation date: 2013-09-05T16:09:28Z
definition: An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control.
id: OMP:0007003
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control.
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: increased positive supercoiling

decreased resistance to pteridine
type: Class
subclass of: altered pteridine resistance
creation date: 2014-01-31T18:03:55Z
definition: A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007004
has_related_synonym: increased sensitivity to pteridine
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control.
database_cross_reference: CHEBI:27601
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to pteridine

decreased negative chemotaxis
type: Class
subclass of: decreased chemotaxis
creation date: 2014-08-07T18:35:51Z
definition: A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control.
id: OMP:0007005
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased negative chemotaxis

population phenotype
type: Class
subclass of: microbial phenotype
creation date: 2014-07-21T10:25:43Z
definition: A microbial phenotype where the phenotype is observed at the level of a microbial population.
database_cross_reference: OBI:0000181
id: OMP:0007006
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype where the phenotype is observed at the level of a microbial population.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: population phenotype

population
type: Axiom
annotated target: OBI:0000181
annotated source: population phenotype
annotated property: database_cross_reference

nutrient import phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2014-07-31T16:11:22Z
definition: A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment.
database_cross_reference: GO:0098657
id: OMP:0007007
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nutrient import phenotype

import into cell
type: Axiom
annotated target: GO:0098657
annotated source: nutrient import phenotype
annotated property: database_cross_reference

decreased population growth at acidic pH
type: Class
subclass of: altered effects of pH on population growth
creation date: 2013-09-11T17:11:01Z
definition: An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control.
id: OMP:0007008
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth phenotype where the rate and/or extent of growth of a microbial population at an acidic pH (<pH 7) is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased population growth at acidic pH

increased population growth at acidic pH
type: Class
subclass of: altered effects of pH on population growth
creation date: 2013-09-11T17:11:44Z
definition: An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control.
id: OMP:0007009
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth phenotype where rate and/or extent of growth of a microbial population at acidic pH (< pH 7) is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased population growth at acidic pH

decreased population growth at alkaline pH
type: Class
subclass of: altered effects of pH on population growth
creation date: 2013-09-11T17:14:28Z
definition: An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control.
id: OMP:0007010
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased population growth at alkaline pH

increased population growth at alkaline pH
type: Class
subclass of: altered effects of pH on population growth
creation date: 2013-09-11T17:14:56Z
definition: An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control.
id: OMP:0007011
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth phenotype where rate and/or extent of growth of a microbial population at alkaline pH (> pH 7) is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased population growth at alkaline pH

presence of inorganic carbon source utilization
type: Class
subclass of: carbon source utilization phenotype
creation date: 2013-09-13T15:10:16Z
definition: A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source.
id: OMP:0007012
has_exact_synonym: autotrophy
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A carbon source utilization phenotype where a microbe can use an inorganic form of carbon, typically CO2 or carbonate, as the sole or primary carbon source.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of inorganic carbon source utilization

inorganic nitrogen source utilization phenotype
type: Class
subclass of: nitrogen source utilization phenotype
creation date: 2013-09-13T15:19:33Z
definition: A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen.
id: OMP:0007013
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_narrow_synonym: nitrate utilization, phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: inorganic nitrogen source utilization phenotype

organic nitrogen source utilization phenotype
type: Class
subclass of: nitrogen source utilization phenotype
creation date: 2013-09-13T15:20:24Z
definition: A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen.
id: OMP:0007014
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: organic nitrogen source utilization phenotype

altered nutrient import phenotype
type: Class
subclass of: nutrient import phenotype
subclass of: altered nutrient utilization
creation date: 2014-07-31T16:16:15Z
definition: A nutrient uptake phenotype that is altered relative to a designated control.
id: OMP:0007015
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A nutrient uptake phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered nutrient import phenotype

decreased nutrient import
type: Class
subclass of: altered nutrient import phenotype
creation date: 2014-07-31T16:16:52Z
definition: An altered nutrient import phenotype where import is decreased relative to a designated control.
id: OMP:0007016
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered nutrient import phenotype where import is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased nutrient import

abolished nutrient import
type: Class
subclass of: decreased nutrient import
creation date: 2014-07-31T16:18:02Z
definition: A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished.
id: OMP:0007017
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished nutrient import

does not require growth factor(s)
type: Class
subclass of: growth factor requirement phenotype
creation date: 2013-09-16T17:29:19Z
definition: A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals.
id: OMP:0007018
has_obo_namespace: microbial_phenotype
has_exact_synonym: prototroph
has_exact_synonym: prototrophic
created by: siegele

Axiom
annotated target: A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: does not require growth factor(s)

increased amino acid requirement
type: Class
subclass of: increased growth factor requirement
subclass of: altered amino acid requirement
creation date: 2013-09-16T17:30:07Z
definition: An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control.
id: OMP:0007019
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased amino acid requirement

increased biofilm formation
type: Class
subclass of: altered biofilm formation
creation date: 2014-08-01T00:12:56Z
definition: An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control.
id: OMP:0007020
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased biofilm formation

decreased amino acid requirement
type: Class
subclass of: decreased growth factor requirement
subclass of: altered amino acid requirement
creation date: 2013-09-17T16:13:20Z
definition: An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control.
id: OMP:0007021
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased amino acid requirement

decreased purine requirement
type: Class
subclass of: decreased growth factor requirement
subclass of: altered purine requirement
creation date: 2013-09-17T16:30:10Z
definition: An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
id: OMP:0007022
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased purine requirement

increased purine requirement
type: Class
subclass of: increased growth factor requirement
subclass of: altered purine requirement
creation date: 2013-09-17T16:30:36Z
definition: An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
id: OMP:0007023
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased purine requirement

increased vitamin/enzyme cofactor requirement
type: Class
subclass of: increased growth factor requirement
subclass of: altered vitamin/enzyme cofactor requirement
creation date: 2013-09-17T16:31:05Z
definition: A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control.
id: OMP:0007024
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased vitamin/enzyme cofactor requirement

decreased vitamin/enzyme cofactor requirement
type: Class
subclass of: decreased growth factor requirement
subclass of: altered vitamin/enzyme cofactor requirement
creation date: 2013-09-17T16:33:34Z
definition: A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control.
id: OMP:0007025
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased vitamin/enzyme cofactor requirement

decreased biofilm formation
type: Class
subclass of: altered biofilm formation
creation date: 2014-08-01T00:12:56Z
definition: An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control.
id: OMP:0007026
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased biofilm formation

increased quorum sensing
type: Class
subclass of: altered quorum sensing phenotype
creation date: 2013-09-17T16:45:02Z
definition: A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control.
id: OMP:0007027
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased quorum sensing

decreased quorum sensing
type: Class
subclass of: altered quorum sensing phenotype
creation date: 2013-09-17T16:45:18Z
definition: An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control.
id: OMP:0007028
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased quorum sensing

decreased utilization of dinitrogen
type: Class
subclass of: altered dinitrogen utilization
creation date: 2013-09-28T20:59:52Z
definition: A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007029
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased utilization of dinitrogen

increased utilization of dinitrogen
type: Class
subclass of: altered dinitrogen utilization
creation date: 2013-09-28T21:02:26Z
definition: A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007030
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased utilization of dinitrogen

presence of dinitrogen utilization
type: Class
subclass of: dinitrogen utilization phenotype
creation date: 2013-09-28T21:02:26Z
definition: A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen.
created by: DeborahSiegele
id: OMP:0007031
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of dinitrogen utilization

decreased utilization of inorganic nitrogen source
type: Class
subclass of: altered utilization of inorganic nitrogen source
creation date: 2013-09-28T21:03:56Z
definition: An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007032
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased utilization of inorganic nitrogen source

increased utilization of inorganic nitrogen source
type: Class
subclass of: altered utilization of inorganic nitrogen source
creation date: 2013-09-28T21:05:18Z
definition: An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007033
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased utilization of inorganic nitrogen source

utilization of inorganic nitrogen phenotype
type: Class
subclass of: inorganic nitrogen source utilization phenotype
creation date: 2013-09-28T21:05:43Z
definition: An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source.
created by: DeborahSiegele
id: OMP:0007034
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: utilization of inorganic nitrogen phenotype

decreased organic nitrogen source utilization
type: Class
subclass of: altered organic nitrogen source utilization
creation date: 2013-09-28T21:07:53Z
definition: An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007035
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased organic nitrogen source utilization

increased organic nitrogen source utilization
type: Class
subclass of: altered organic nitrogen source utilization
creation date: 2013-09-28T21:07:58Z
definition: An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007036
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased organic nitrogen source utilization

utilization of organic nitrogen phenotype
type: Class
creation date: 2013-09-28T21:08:02Z
definition: An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen.
created by: DeborahSiegele
id: OMP:0007037
has_obo_namespace: microbial_phenotype
deprecated: true

Axiom
annotated target: An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: utilization of organic nitrogen phenotype

amino acid requirement
type: Class
subclass of: requires growth factor(s)
creation date: 2013-09-29T00:27:05Z
definition: A growth factor requirement phenotype where the required growth factor is one or more amino acids.
created by: DeborahSiegele
id: OMP:0007038
has_narrow_synonym: homocysteine requirement
has_narrow_synonym: isoleucine requirement
has_narrow_synonym: methionine requirement
has_obo_namespace: microbial_phenotype
has_narrow_synonym: valine requirement

Axiom
database_cross_reference: CHEBI:27266
annotated target: valine requirement
annotated source: amino acid requirement
annotated property: has_narrow_synonym

Axiom
annotated target: A growth factor requirement phenotype where the required growth factor is one or more amino acids.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: amino acid requirement

Axiom
database_cross_reference: CHEBI:24898
annotated target: isoleucine requirement
annotated source: amino acid requirement
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:17230
annotated target: homocysteine requirement
annotated source: amino acid requirement
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:16811
annotated target: methionine requirement
annotated source: amino acid requirement
annotated property: has_narrow_synonym

purine requirement
type: Class
subclass of: requires growth factor(s)
creation date: 2013-09-29T00:33:05Z
definition: A requires growth factor(s) phenotype where the required growth factor is a purine base.
created by: DeborahSiegele
id: OMP:0007039
has_narrow_synonym: adenine requirement
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A requires growth factor(s) phenotype where the required growth factor is a purine base.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: purine requirement

Axiom
database_cross_reference: CHEBI:16708
annotated target: adenine requirement
annotated source: purine requirement
annotated property: has_narrow_synonym

vitamin/enzyme cofactor requirement
type: Class
subclass of: requires growth factor(s)
creation date: 2013-09-29T00:36:46Z
definition: A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor.
created by: DeborahSiegele
id: OMP:0007040
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: vitamin/enzyme cofactor requirement

decreased positive chemotaxis
type: Class
subclass of: decreased chemotaxis
creation date: 2014-08-07T18:37:42Z
definition: A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control.
id: OMP:0007041
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased positive chemotaxis

sulfur source utilization phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2013-09-29T09:39:03Z
definition: A nutrient utilization phenotype where the nutrient is used as a source of sulfur.
created by: DeborahSiegele
id: OMP:0007042
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype where the nutrient is used as a source of sulfur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: sulfur source utilization phenotype

phosphorus source utilization phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2013-09-29T09:41:48Z
definition: A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus.
created by: DeborahSiegele
id: OMP:0007043
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: phosphorus source utilization phenotype

growth factor requirement phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2013-10-01T15:07:53Z
definition: A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction.
id: OMP:0007044
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction.
database_cross_reference: ISBN:9780878936083
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: growth factor requirement phenotype

inorganic phosphorus source utilization
type: Class
subclass of: phosphorus source utilization phenotype
creation date: 2013-10-01T15:17:10Z
definition: A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus.
id: OMP:0007045
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: inorganic phosphorus source utilization

organic phosphorus source utilization
type: Class
subclass of: phosphorus source utilization phenotype
creation date: 2013-10-01T15:17:10Z
definition: A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus.
id: OMP:0007046
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: organic phosphorus source utilization

decreased utilization of inorganic phosphorus source
type: Class
subclass of: altered inorganic phosphorus source utilization
creation date: 2013-10-01T15:19:36Z
definition: An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control.
id: OMP:0007047
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased utilization of inorganic phosphorus source

increased utilization of inorganic phosphorus source
type: Class
subclass of: altered inorganic phosphorus source utilization
creation date: 2013-10-01T15:19:36Z
definition: An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control.
id: OMP:0007048
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased utilization of inorganic phosphorus source

utilization of inorganic phosphorus phenotype
type: Class
creation date: 2013-10-01T15:19:36Z
definition: An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus.
id: OMP:0007049
comment: This term was made obsolete because it is redundant with OMP:0007045.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: utilization of inorganic phosphorus phenotype

decreased utilization of organic phosphorus source
type: Class
subclass of: altered organic phosphorus source utilization
creation date: 2013-10-01T15:20:22Z
definition: An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control.
id: OMP:0007050
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased utilization of organic phosphorus source

increased utilization of organic phosphorus source
type: Class
subclass of: altered organic phosphorus source utilization
creation date: 2013-10-01T15:20:22Z
definition: An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control.
id: OMP:0007051
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased utilization of organic phosphorus source

utilization of organic phosphorus
type: Class
creation date: 2013-10-01T15:20:22Z
definition: An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus.
id: OMP:0007052
comment: This term was made obsolete because it is redunant with OMP:0007046.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: utilization of organic phosphorus

increased positive chemotaxis
type: Class
subclass of: increased chemotaxis
creation date: 2014-08-08T18:08:51Z
definition: An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control.
id: OMP:0007053
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased positive chemotaxis

increased negative chemotaxis
type: Class
subclass of: increased chemotaxis
creation date: 2014-08-08T18:08:51Z
definition: An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control.
id: OMP:0007054
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased negative chemotaxis

decreased utilization of inorganic sulfur
type: Class
subclass of: altered sulfur source utilization phenotype
creation date: 2013-10-01T15:33:08Z
definition: An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
id: OMP:0007055
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased utilization of inorganic sulfur

increased utilization of inorganic sulfur
type: Class
subclass of: altered sulfur source utilization phenotype
creation date: 2013-10-01T15:33:32Z
definition: An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
id: OMP:0007056
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased utilization of inorganic sulfur

presence of inorganic sulfur utilization
type: Class
subclass of: sulfur source utilization phenotype
creation date: 2013-10-01T15:33:38Z
definition: A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur.
id: OMP:0007057
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of inorganic sulfur utilization

decreased utilization of organic sulfur source
type: Class
subclass of: altered sulfur source utilization phenotype
creation date: 2013-10-01T15:34:00Z
definition: An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
id: OMP:0007058
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased utilization of organic sulfur source

increased utilization of organic sulfur
type: Class
subclass of: altered sulfur source utilization phenotype
creation date: 2013-10-01T15:34:05Z
definition: An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
id: OMP:0007059
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased utilization of organic sulfur

presence of organic sulfur utilization
type: Class
subclass of: sulfur source utilization phenotype
creation date: 2013-10-01T15:34:09Z
definition: A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur.
id: OMP:0007060
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of organic sulfur utilization

iron source utilization phenotype
type: Class
subclass of: nutrient utilization phenotype
creation date: 2013-10-01T15:46:38Z
definition: A nutrient utilization phenotype where the nutrient is being used as a source of iron.
id: OMP:0007061
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype where the nutrient is being used as a source of iron.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: iron source utilization phenotype

increased heterocyst formation
type: Class
subclass of: altered heterocyst formation
creation date: 2014-01-31T18:31:01Z
definition: A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007062
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased heterocyst formation

increased myxospore formation
type: Class
equivalent class: Class
  intersection of: altered myxospore formation
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered myxospore formation
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2014-01-31T18:45:09Z
definition: An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control.
created by: DeborahSiegele
id: OMP:0007063
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased myxospore formation

phototrophic phenotype
type: Class
subclass of: energy metabolism phenotype
creation date: 2014-01-31T18:49:00Z
definition: An energy metabolism phenotype where light is used as the energy source.
created by: DeborahSiegele
id: OMP:0007064
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_related_synonym: phototroph
in_subset: qc do not manually annotate

Axiom
annotated target: An energy metabolism phenotype where light is used as the energy source.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: phototrophic phenotype

pteridine resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2014-02-03T15:39:56Z
definition: An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound.
database_cross_reference: CHEBI:26373
id: OMP:0007065
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_broad_synonym: antifolate resistance
has_narrow_synonym: methotrexate resistance phenotype
has_obo_namespace: microbial_phenotype
has_related_synonym: pteridine sensitivity phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:73913
annotated target: antifolate resistance
annotated source: pteridine resistance phenotype
annotated property: has_broad_synonym

Axiom
annotated target: An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound.
database_cross_reference: CHEBI:26373
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: pteridine resistance phenotype

Axiom
database_cross_reference: CHEBI:44185
annotated target: methotrexate resistance phenotype
annotated source: pteridine resistance phenotype
annotated property: has_narrow_synonym

asexual reproduction phenotype
type: Class
equivalent class: Class
  intersection of: population growth phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: asexual reproduction
subclass of: population growth phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: asexual reproduction
creation date: 2014-02-03T15:55:25Z
definition: A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process.
database_cross_reference: GO:0019954
id: OMP:0007066
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process.
database_cross_reference: ISBN:0673521435
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: asexual reproduction phenotype

asexual reproduction
type: Axiom
annotated target: GO:0019954
annotated source: asexual reproduction phenotype
annotated property: database_cross_reference

binary fission phenotype
type: Class
subclass of: asexual reproduction phenotype
creation date: 2014-02-03T15:55:54Z
definition: An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape.
database_cross_reference: GO:0043093
id: OMP:0007067
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape.
database_cross_reference: ISBN:0673521435
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: binary fission phenotype

cytokinesis by binary fission
type: Axiom
annotated target: GO:0043093
annotated source: binary fission phenotype
annotated property: database_cross_reference

multiple fission phenotype
type: Class
subclass of: asexual reproduction phenotype
creation date: 2014-02-03T16:09:27Z
definition: An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells.
id: OMP:0007068
has_narrow_synonym: baeocyte formation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells.
database_cross_reference: ISBN:9781593392925
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: multiple fission phenotype

requires growth factor(s)
type: Class
subclass of: growth factor requirement phenotype
creation date: 2014-02-21T15:07:59Z
definition: A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium.
id: OMP:0007069
has_exact_synonym: auxotroph
has_exact_synonym: auxotrophic
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A growth factor requirement phenotype where a microorganism is unable to synthesize an organic compound that is required for growth and reproduction. The required growth factor must be added to the growth medium.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: requires growth factor(s)

decreased organic carbon source utilization
type: Class
subclass of: altered carbon source utilization
creation date: 2014-02-21T15:18:08Z
definition: An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control.
id: OMP:0007070
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered carbon source utilization phenotype where the ability to use an organic carbon source is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased organic carbon source utilization

increased organic carbon source utilization
type: Class
subclass of: altered carbon source utilization
creation date: 2014-02-21T15:18:41Z
definition: An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control.
id: OMP:0007071
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered carbon source utilization phenotype where the ability to use an organic carbon source is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased organic carbon source utilization

anaerobic respiration phenotype
type: Class
subclass of: respiration phenotype
creation date: 2014-02-21T15:28:04Z
definition: A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2).
id: OMP:0007072
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2).
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: anaerobic respiration phenotype

fermentation phenotype
type: Class
subclass of: energy metabolism phenotype
creation date: 2014-02-21T15:31:32Z
definition: An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain.
id: OMP:0007073
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: fermentation phenotype

increased growth factor requirement
type: Class
subclass of: altered growth factor requirement
creation date: 2014-02-21T15:42:23Z
definition: A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control.
id: OMP:0007074
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased growth factor requirement

decreased growth factor requirement
type: Class
subclass of: altered growth factor requirement
creation date: 2014-02-21T15:42:44Z
definition: A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control.
id: OMP:0007075
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased growth factor requirement

altered aerotaxis
type: Class
equivalent class: Class
  intersection of: aerotaxis phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: aerotaxis phenotype
subclass of: altered taxis
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-04-24T17:41:34Z
definition: An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control.
id: OMP:0007076
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered aerotaxis

altered chemotaxis
type: Class
subclass of: chemotaxis phenotype
subclass of: altered taxis
creation date: 2014-04-24T17:43:04Z
definition: A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control.
id: OMP:0007077
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered chemotaxis

altered carbon source utilization
type: Class
subclass of: carbon source utilization phenotype
subclass of: altered nutrient utilization
creation date: 2014-04-30T15:40:12Z
definition: An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control.
id: OMP:0007078
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered nutrient utilization phenotype where the ability of a microbe to utilize a nutrient as the source of carbon is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered carbon source utilization

altered growth factor requirement
type: Class
subclass of: growth factor requirement phenotype
subclass of: altered nutrient utilization
creation date: 2014-04-30T15:52:18Z
definition: A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control.
id: OMP:0007079
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered growth factor requirement

altered gene expression
type: Class
equivalent class: Class
  intersection of: gene expression phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_process_quality
subclass of: gene expression phenotype
subclass of: altered microbial phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_process_quality
creation date: 2014-08-11T16:32:07Z
definition: A gene expression phenotype where expression of a gene or genes is altered relative to a designated control.
id: OMP:0007080
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A gene expression phenotype where expression of a gene or genes is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered gene expression

altered purine requirement
type: Class
subclass of: purine requirement
subclass of: altered growth factor requirement
creation date: 2014-04-30T16:03:42Z
definition: An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control.
id: OMP:0007081
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered purine requirement

altered vitamin/enzyme cofactor requirement
type: Class
subclass of: vitamin/enzyme cofactor requirement
subclass of: altered growth factor requirement
creation date: 2014-04-30T16:07:16Z
definition: An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control.
id: OMP:0007082
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered vitamin/enzyme cofactor requirement

altered cell size
type: Class
subclass of: cell size phenotype
subclass of: altered cell morphology
creation date: 2014-07-06T14:41:49Z
definition: An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control.
id: OMP:0007083
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell morphology phenotype in which the volume or dimensions of a microbial cell are altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell size

decreased cell length
type: Class
subclass of: decreased cell size
subclass of: altered cell length
creation date: 2014-07-06T14:43:59Z
definition: An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control.
id: OMP:0007084
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased cell length

altered microbial phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: microbial phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-07-10T12:28:36Z
definition: A microbial phenotype that is altered in some way relative to a designated control.
id: OMP:0007085
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that is altered in some way relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered microbial phenotype

altered sulfur source utilization phenotype
type: Class
subclass of: sulfur source utilization phenotype
creation date: 2014-07-10T12:40:51Z
definition: A sulfur source utilization phenotype that is altered relative to a designated control.
id: OMP:0007086
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfur source utilization phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered sulfur source utilization phenotype

altered iron source utilization
type: Class
subclass of: iron source utilization phenotype
subclass of: altered nutrient utilization
creation date: 2014-07-10T12:48:21Z
definition: An iron source utilization phenotype that is altered relative to a designated control.
id: OMP:0007087
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An iron source utilization phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered iron source utilization

altered heme utilization phenotype
type: Class
subclass of: heme utilization phenotype
creation date: 2014-07-10T12:49:28Z
definition: A heme utilization phenotype altered relative to a designated control.
id: OMP:0007088
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A heme utilization phenotype altered relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: altered heme utilization phenotype

abolished heme utilization
type: Class
subclass of: decreased heme utilization
subclass of: absence of heme utilization
creation date: 2014-07-10T12:51:30Z
definition: A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished.
id: OMP:0007089
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: abolished heme utilization

more rod-like cell shape
type: Class
subclass of: cylindrical cell shape
subclass of: altered cell shape
creation date: 2014-07-10T21:50:33Z
definition: An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control.
id: OMP:0007090
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: more rod-like cell shape

decreased motility by gliding
type: Class
subclass of: decreased motility
subclass of: altered motility by gliding
creation date: 2014-07-10T20:08:43Z
definition: A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control.
id: OMP:0007091
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased motility by gliding

decreased motility by swarming
type: Class
subclass of: decreased motility
subclass of: altered cell motility by swarming
creation date: 2014-07-10T20:08:43Z
definition: A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control.
id: OMP:0007092
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased motility by swarming

decreased motility by swimming
type: Class
subclass of: decreased motility
subclass of: altered cell motility by swimming
creation date: 2014-07-10T20:08:43Z
definition: A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control.
id: OMP:0007093
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased motility by swimming

decreased motility by twitching
type: Class
subclass of: decreased motility
subclass of: altered cell motility by twitching
creation date: 2014-07-10T20:08:43Z
definition: A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control.
id: OMP:0007094
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: decreased motility by twitching

increased motility by gliding
type: Class
subclass of: increased motility
subclass of: altered motility by gliding
creation date: 2014-07-10T20:10:11Z
definition: An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control.
id: OMP:0007095
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased motility by gliding

increased motility by swarming
type: Class
subclass of: increased motility
subclass of: altered cell motility by swarming
creation date: 2014-07-10T20:10:11Z
definition: An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control.
id: OMP:0007096
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased motility by swarming

increased motility by swimming
type: Class
subclass of: increased motility
subclass of: altered cell motility by swimming
creation date: 2014-07-10T20:10:11Z
definition: An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control.
id: OMP:0007097
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased motility by swimming

increased motility by twitching
type: Class
subclass of: increased motility
subclass of: altered cell motility by twitching
creation date: 2014-07-10T20:10:11Z
definition: An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control.
id: OMP:0007098
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: increased motility by twitching

cylindrical cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2014-07-10T20:13:46Z
definition: A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter.
id: OMP:0007099
database_cross_reference: PATO:0001873
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cylindrical cell shape

spheroid cell shape
type: Class
subclass of: cell shape phenotype
creation date: 2014-07-10T20:13:46Z
definition: A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes.
id: OMP:0007100
database_cross_reference: PATO:0001865
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: spheroid cell shape

altered cell shape
type: Class
equivalent class: Class
  intersection of: cell shape phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: cell shape phenotype
subclass of: altered cell morphology
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-07-10T20:24:53Z
definition: A cell shape phenotype where the shape of a cell is altered relative to a designated control.
database_cross_reference: APO::0000051
id: OMP:0007101
has_obo_namespace: microbial_phenotype
created by: siegele

cell shape
type: Axiom
annotated target: APO::0000051
annotated source: altered cell shape
annotated property: database_cross_reference

Axiom
annotated target: A cell shape phenotype where the shape of a cell is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell shape

more rounded cell shape
type: Class
subclass of: altered cell shape
creation date: 2014-07-10T21:51:13Z
definition: An altered cell shape phenotype where a cell's shape is rounder than that of a designated control.
id: OMP:0007102
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell shape phenotype where a cell's shape is rounder than that of a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: more rounded cell shape

altered cell morphology
type: Class
equivalent class: Class
  intersection of: cell morphology phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: cell morphology phenotype
subclass of: altered microbial phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-07-10T22:43:40Z
definition: A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control.
id: OMP:0007103
has_narrow_synonym: abnormal cell morphology
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0000005
annotated target: abnormal cell morphology
annotated source: altered cell morphology
annotated property: has_narrow_synonym

Axiom
annotated target: A cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell morphology

altered nutrient utilization
type: Class
subclass of: nutrient utilization phenotype
subclass of: altered microbial phenotype
creation date: 2014-07-10T22:45:48Z
definition: A nutrient utilization phenotype that is altered relative to a designated control.
id: OMP:0007104
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A nutrient utilization phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered nutrient utilization

altered flagellum
type: Class
subclass of: flagellum morphology phenotype
creation date: 2014-07-10T23:00:30Z
definition: A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control.
id: OMP:0007105
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered flagellum

transcription phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: transcription, DNA-templated
subclass of: gene expression phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: transcription, DNA-templated
creation date: 2014-08-11T16:37:39Z
definition: A gene expression phenotype that affects DNA-dependent transcription.
database_cross_reference: GO:0006351
id: OMP:0007106
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A gene expression phenotype that affects DNA-dependent transcription.
database_cross_reference: GO:0006351
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: transcription phenotype

transcription, DNA-templated
type: Axiom
annotated target: GO:0006351
annotated source: transcription phenotype
annotated property: database_cross_reference

translation phenotype
type: Class
equivalent class: Class
  intersection of: gene expression phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: translation
subclass of: gene expression phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: translation
creation date: 2014-08-11T16:37:39Z
definition: A gene expression phenotype that affects translation of one or more mRNAs.
database_cross_reference: FYPO:0000291
database_cross_reference: GO:0006412
id: OMP:0007107
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

translation
type: Axiom
annotated target: GO:0006412
annotated source: translation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A gene expression phenotype that affects translation of one or more mRNAs.
database_cross_reference: GO:0006412
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: translation phenotype

translation phenotype
type: Axiom
annotated target: FYPO:0000291
annotated source: translation phenotype
annotated property: database_cross_reference

altered transcription
type: Class
equivalent class: Class
  intersection of: transcription phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_process_quality
subclass of: altered gene expression
subclass of: transcription phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_process_quality
creation date: 2014-08-11T16:37:59Z
definition: A transcription phenotype where transcription of a gene or genes is altered relative to a designated control.
id: OMP:0007108
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A transcription phenotype where transcription of a gene or genes is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered transcription

chemotrophic phenotype
type: Class
subclass of: energy metabolism phenotype
creation date: 2014-07-17T13:45:13Z
definition: An energy metabolism phenotype where energy is obtained from the oxidation of chemicals.
id: OMP:0007109
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: An energy metabolism phenotype where energy is obtained from the oxidation of chemicals.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: chemotrophic phenotype

chemolithotrophic
type: Class
subclass of: chemotrophic phenotype
creation date: 2014-07-17T13:46:04Z
definition: A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals.
id: OMP:0007110
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: chemolithotrophic

chemoorganotrophic
type: Class
subclass of: chemotrophic phenotype
creation date: 2014-07-17T13:46:04Z
definition: A chemotrophic phenotype where energy is derived from the oxidation of organic molecules.
id: OMP:0007111
has_obo_namespace: microbial_phenotype
has_exact_synonym: organotroph
created by: siegele

Axiom
annotated target: A chemotrophic phenotype where energy is derived from the oxidation of organic molecules.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: chemoorganotrophic

respiration phenotype
type: Class
subclass of: energy metabolism phenotype
creation date: 2014-07-17T13:56:17Z
definition: An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor.
database_cross_reference: GO:0045333
id: OMP:0007112
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor.
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: respiration phenotype

cellular respiration
type: Axiom
annotated target: GO:0045333
annotated source: respiration phenotype
annotated property: database_cross_reference

ferrous iron (Fe2+) oxidation
type: Class
subclass of: chemolithotrophic
creation date: 2014-07-17T14:28:35Z
definition: A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+).
id: OMP:0007113
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+).
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: ferrous iron (Fe2+) oxidation

sulfide (H2S) oxidation
type: Class
subclass of: chemolithotrophic
creation date: 2014-07-17T14:28:35Z
definition: A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S).
id: OMP:0007114
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S).
database_cross_reference: ISBN:978-0-07-340240-6
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: sulfide (H2S) oxidation

altered population growth rate
type: Class
subclass of: population growth rate phenotype
subclass of: altered population growth
creation date: 2014-07-17T16:29:34Z
definition: A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control.
id: OMP:0007115
has_narrow_synonym: altered doubling time
has_exact_synonym: altered generation time
has_exact_synonym: altered growth rate
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where the rate at which a population of microbes multiplies is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered population growth rate

altered cell stalk
type: Class
subclass of: stalked cell shape
subclass of: altered cell shape
creation date: 2014-07-18T13:53:13Z
definition: An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control.
id: OMP:0007116
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell stalk

increased transcription of gene or operon
type: Class
equivalent class: Class
  intersection of: altered transcription
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered transcription
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2014-08-11T16:41:06Z
definition: An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control.
id: OMP:0007117
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased transcription of gene or operon

decreased transcription of gene or operon
type: Class
equivalent class: Class
  intersection of: altered transcription
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered transcription
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2014-08-11T16:41:06Z
definition: An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control.
id: OMP:0007118
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased transcription of gene or operon

abolished transcription of gene or operon
type: Class
equivalent class: Class
  intersection of: decreased transcription of gene or operon
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0000462
subclass of: decreased transcription of gene or operon
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0000462
creation date: 2014-08-11T16:42:21Z
definition: A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control.
id: OMP:0007119
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished transcription of gene or operon

decreased transcription of sigma-factor dependent genes
type: Class
subclass of: decreased transcription of gene or operon
creation date: 2014-08-11T16:57:46Z
definition: A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control.
id: OMP:0007120
comment: The UniProt accession for the particular sigma factor should be entered in the extension field.
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased transcription of sigma-factor dependent genes

increased transcription of sigma-factor dependent genes
type: Class
subclass of: increased transcription of gene or operon
creation date: 2014-08-11T17:02:37Z
definition: An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control.
id: OMP:0007121
comment: The UniProt accession for the particular sigma factor should be entered in the extension field.
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased transcription of sigma-factor dependent genes

altered translation
type: Class
subclass of: altered gene expression
subclass of: translation phenotype
creation date: 2014-08-11T17:07:54Z
definition: A translation phenotype where translation of one or more mRNAs is altered relative to a designated control.
id: OMP:0007122
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A translation phenotype where translation of one or more mRNAs is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered translation

Increased translation
type: Class
subclass of: altered translation
creation date: 2014-08-11T17:10:06Z
definition: An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control.
id: OMP:0007123
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: Increased translation

decreased translation
type: Class
subclass of: altered translation
creation date: 2014-08-11T17:10:06Z
definition: An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control.
id: OMP:0007124
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased translation

abolished translation
type: Class
subclass of: decreased translation
creation date: 2014-08-11T17:10:06Z
definition: A decreased translation phenotype where translation of one or more mRNAs is abolished.
id: OMP:0007125
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased translation phenotype where translation of one or more mRNAs is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished translation

viscous colony consistency
type: Class
subclass of: colony consistency phenotype
creation date: 2014-08-11T17:58:30Z
definition: A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency.
id: OMP:0007126
database_cross_reference: SNOMEDCT:16601003
created by: dsiegele
has_obo_namespace: microbial_phenotype

Bacterial colony consistency, viscous
type: Axiom
annotated target: SNOMEDCT:16601003
annotated source: viscous colony consistency
annotated property: database_cross_reference

Axiom
annotated target: A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency.
database_cross_reference: ISBN:1555810489
database_cross_reference: OMP:WAM
annotated property: definition
annotated source: viscous colony consistency

altered taxis
type: Class
equivalent class: Class
  intersection of: taxis phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: taxis phenotype
subclass of: altered microbial phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-08-12T13:30:01Z
definition: A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control.
id: OMP:0007127
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered taxis

altered cell arrangement
type: Class
subclass of: cell arrangement phenotype
subclass of: altered microbial phenotype
creation date: 2014-08-12T13:36:13Z
definition: A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control.
id: OMP:0007128
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell arrangement

altered outer membrane vesicle production
type: Class
subclass of: altered outer membrane vesicles
creation date: 2014-08-14T18:22:16Z
definition: An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control.
id: OMP:0007129
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered outer membrane vesicle production

differential test phenotype
type: Class
subclass of: microbial phenotype
creation date: 2014-08-16T16:40:58Z
definition: A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms.
id: OMP:0007130
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms.
database_cross_reference: ISBN:9780895828309
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: differential test phenotype

altered differential test result
type: Class
subclass of: altered microbial phenotype
subclass of: differential test phenotype
creation date: 2014-08-16T16:44:03Z
definition: A differential media phenotype where the results of a differential test are altered relative to a designated control.
id: OMP:0007131
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A differential media phenotype where the results of a differential test are altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered differential test result

decreased flagellum length
type: Class
subclass of: altered flagellum length
creation date: 2014-08-17T00:46:29Z
definition: An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control.
id: OMP:0007132
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased flagellum length

altered capsule phenotype
type: Class
subclass of: capsule phenotype
creation date: 2014-08-17T12:52:35Z
definition: A capsule phenotype where the capsule layer is altered relative to a designated control.
id: OMP:0007133
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A capsule phenotype where the capsule layer is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered capsule phenotype

altered resistance to an antimicrobial agent
type: Class
equivalent class: Class
  intersection of: antimicrobial agent resistance phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_process_quality
subclass of: antimicrobial agent resistance phenotype
subclass of: altered resistance to chemical
subclass of: Restriction
  on property: has_quality
  some values from: altered_process_quality
creation date: 2014-08-17T13:12:31Z
definition: An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control.
id: OMP:0007134
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to an antimicrobial agent

not resistant to alkaloid
type: Class
subclass of: alkaloid chemical resistance phenotype
creation date: 2014-08-17T13:19:30Z
definition: An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound.
id: OMP:0007135
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to alkaloid

resistant to alkaloid
type: Class
subclass of: alkaloid chemical resistance phenotype
creation date: 2014-08-17T13:19:30Z
definition: An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds.
id: OMP:0007136
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to alkaloid

altered alkaloid resistance
type: Class
subclass of: alkaloid chemical resistance phenotype
subclass of: altered resistance to an antimicrobial agent
creation date: 2014-08-17T13:19:30Z
definition: An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control.
id: OMP:0007137
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered alkaloid resistance

altered effects of pH on population growth
type: Class
subclass of: pH effects on population growth phenotype
creation date: 2014-08-17T17:35:20Z
definition: A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control.
id: OMP:0007138
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where the rate and/or extent of growth of a microbial population at a specified pH is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered effects of pH on population growth

altered lantibiotic resistance phenotype
type: Class
subclass of: lantibiotic resistance phenotype
subclass of: altered bacteriocin resistance
creation date: 2014-08-17T18:03:16Z
definition: A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control.
id: OMP:0007139
has_related_synonym: lantibiotic sensitivity phenotype
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered lantibiotic resistance phenotype

schizogeny phenotype
type: Class
subclass of: multiple fission phenotype
creation date: 2014-08-18T17:02:12Z
definition: A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell.
database_cross_reference: GO:0020014
id: OMP:0007140
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell.
database_cross_reference: ISBN:9781593392925
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: schizogeny phenotype

schizogeny
type: Axiom
annotated target: GO:0020014
annotated source: schizogeny phenotype
annotated property: database_cross_reference

presence of schizogeny
type: Class
subclass of: presence of multiple fission
subclass of: schizogeny phenotype
creation date: 2014-08-18T17:12:34Z
definition: A schizogeny phenotype where an organism reproduces by the process of schizogeny.
id: OMP:0007141
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A schizogeny phenotype where an organism reproduces by the process of schizogeny.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of schizogeny

asexual sporulation phenotype
type: Class
subclass of: sporulation phenotype
subclass of: asexual reproduction phenotype
creation date: 2014-08-18T17:15:43Z
definition: A sporulation phenotype related to the formation of spores derived from the products of mitosis.
database_cross_reference: GO:0030436
id: OMP:0007142
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_related_synonym: mitotic spore formation
created by: siegele
in_subset: qc do not manually annotate

asexual sporulation
type: Axiom
annotated target: GO:0030436
annotated source: asexual sporulation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A sporulation phenotype related to the formation of spores derived from the products of mitosis.
database_cross_reference: GO:0030436
database_cross_reference: OMP:DAS
database_cross_reference: PMID:9781593392925
annotated property: definition
annotated source: asexual sporulation phenotype

presence of asexual sporulation
type: Class
subclass of: asexual sporulation phenotype
creation date: 2014-08-18T17:19:11Z
definition: An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores.
id: OMP:0007143
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of asexual sporulation

altered asexual reproduction
type: Class
subclass of: asexual reproduction phenotype
subclass of: altered population growth
creation date: 2014-08-18T17:22:42Z
definition: An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control.
id: OMP:0007144
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered asexual reproduction

altered asexual sporulation
type: Class
subclass of: asexual sporulation phenotype
subclass of: altered asexual reproduction
creation date: 2014-08-18T17:23:30Z
definition: An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control.
id: OMP:0007145
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered asexual sporulation

altered schizogeny
type: Class
subclass of: altered multiple fission
subclass of: schizogeny phenotype
creation date: 2014-08-18T17:24:18Z
definition: A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control.
id: OMP:0007146
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered schizogeny

altered DNA replication
type: Class
equivalent class: Class
  intersection of: DNA replication phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_process_quality
subclass of: DNA replication phenotype
subclass of: altered cell cycle
subclass of: altered biological process
subclass of: Restriction
  on property: has_quality
  some values from: altered_process_quality
creation date: 2014-08-19T14:26:57Z
definition: A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control.
id: OMP:0007147
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered DNA replication

cytokinesis phenotype
type: Class
subclass of: cell cycle phenotype
creation date: 2014-08-19T14:37:21Z
definition: A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells.
database_cross_reference: GO:0000910
id: OMP:0007148
has_exact_synonym: cell division phenotype
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cytokinesis phenotype

cytokinesis
type: Axiom
annotated target: GO:0000910
annotated source: cytokinesis phenotype
annotated property: database_cross_reference

septation phenotype
type: Class
subclass of: cytokinesis phenotype
creation date: 2014-08-19T14:52:08Z
definition: A cytokinesis phenotype related to the process of forming a septum that separates daughter cells.
id: OMP:0007149
has_narrow_synonym: abnormal septation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0000117
annotated target: abnormal septation
annotated source: septation phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: A cytokinesis phenotype related to the process of forming a septum that separates daughter cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: septation phenotype

abolished motility by gliding
type: Class
subclass of: abolished motility
subclass of: decreased motility by gliding
subclass of: absence of motility by gliding
creation date: 2014-08-20T23:57:11Z
definition: A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished.
id: OMP:0007150
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished motility by gliding

altered colony pigmentation
type: Class
subclass of: colony pigmentation phenotype
creation date: 2014-08-27T22:56:03Z
definition: A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control.
id: OMP:0007151
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered colony pigmentation

persister cell phenotype
type: Class
subclass of: population growth phenotype
creation date: 2014-08-28T11:55:19Z
definition: A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics.
id: OMP:0007152
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:20528688
annotated property: definition
annotated source: persister cell phenotype

altered persister cell phenotype
type: Class
subclass of: persister cell phenotype
subclass of: altered population growth
creation date: 2014-08-28T11:57:56Z
definition: A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control.
id: OMP:0007153
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered persister cell phenotype

increased frequency of persister cells
type: Class
subclass of: altered persister cell phenotype
creation date: 2014-08-28T11:59:20Z
definition: An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control.
id: OMP:0007154
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased frequency of persister cells

decreased frequency of persister cells
type: Class
subclass of: altered persister cell phenotype
creation date: 2014-08-28T12:00:42Z
definition: An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control.
id: OMP:0007155
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased frequency of persister cells

population growth rate phenotype
type: Class
subclass of: population growth phenotype
creation date: 2014-08-28T12:14:20Z
definition: A population growth phenotype concerning the rate at which a microbial population multiplies over time.
id: OMP:0007156
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype concerning the rate at which a microbial population multiplies over time.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: population growth rate phenotype

altered population growth
type: Class
subclass of: population growth phenotype
subclass of: altered biological process
subclass of: altered population phenotype
creation date: 2014-08-28T12:15:47Z
definition: A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control.
id: OMP:0007157
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where the rate and/or extent of growth of a microbial population is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered population growth

altered response to stress phenotype
type: Class
subclass of: response to stress phenotype
subclass of: altered population growth
creation date: 2014-08-28T16:51:03Z
definition: A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control.
id: OMP:0007158
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered response to stress phenotype

altered response to radiation stress
type: Class
subclass of: response to radiation stress phenotype
subclass of: altered response to stress phenotype
creation date: 2014-08-28T17:03:47Z
definition: A radiation stress phenotype that is altered relative to a designated control.
id: OMP:0007159
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A radiation stress phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered response to radiation stress

altered colony morphology
type: Class
subclass of: colony morphology phenotype
subclass of: altered microbial phenotype
subclass of: altered population morphology
creation date: 2014-08-29T12:27:50Z
definition: A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control.
id: OMP:0007160
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered colony morphology

regulation phenotype
type: Class
subclass of: microbial phenotype
creation date: 2014-09-14T14:45:03Z
definition: A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality.
database_cross_reference: FYPO:0000145
id: OMP:0007161
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

regulation phenotype
type: Axiom
annotated target: FYPO:0000145
annotated source: regulation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: regulation phenotype

gene expression regulation phenotype
type: Class
subclass of: regulation phenotype
creation date: 2014-09-14T14:47:50Z
definition: A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover.
database_cross_reference: FYPO:0000288
id: OMP:0007162
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: gene expression regulation phenotype

gene expression regulation phenotype
type: Axiom
annotated target: FYPO:0000288
annotated source: gene expression regulation phenotype
annotated property: database_cross_reference

transcription regulation phenotype
type: Class
subclass of: gene expression regulation phenotype
creation date: 2014-09-14T14:52:31Z
definition: A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription.
database_cross_reference: FYPO:0000143
id: OMP:0007163
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

transcription regulation phenotype
type: Axiom
annotated target: FYPO:0000143
annotated source: transcription regulation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: transcription regulation phenotype

translation regulation phenotype
type: Class
subclass of: gene expression regulation phenotype
creation date: 2014-09-14T14:54:10Z
definition: A gene expression regulation phenotype that affects the regulation of translation.
database_cross_reference: FYPO:0000289
id: OMP:0007164
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_exact_synonym: protein synthesis regulation
created by: siegele
in_subset: qc do not manually annotate

translation regulation phenotype
type: Axiom
annotated target: FYPO:0000289
annotated source: translation regulation phenotype
annotated property: database_cross_reference

Axiom
annotated target: A gene expression regulation phenotype that affects the regulation of translation.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: translation regulation phenotype

altered septation
type: Class
subclass of: septation phenotype
creation date: 2014-09-14T15:35:53Z
definition: A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control.
id: OMP:0007165
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered septation

altered cytokinesis
type: Class
subclass of: cytokinesis phenotype
creation date: 2014-09-14T15:36:38Z
definition: A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control.
id: OMP:0007166
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cytokinesis

population growth phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: reproduction
subclass of: population phenotype
subclass of: biological process phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: reproduction
creation date: 2014-09-25T17:14:07Z
definition: A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population.
database_cross_reference: GO:0000003
id: OMP:0007167
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype relating to the growth of a microbial population, i.e. an increase in the size of the population resulting from reproduction of individual microbes in the population.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: population growth phenotype

reproduction
type: Axiom
annotated target: GO:0000003
annotated source: population growth phenotype
annotated property: database_cross_reference

abolished septation
type: Class
subclass of: decreased septation
creation date: 2014-09-25T17:18:11Z
definition: A decreased septation phenotype where formation of new cell septa is abolished.
id: OMP:0007168
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased septation phenotype where formation of new cell septa is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished septation

antimicrobial peptide resistance phenotype
type: Class
creation date: 2014-09-26T15:57:03Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached. **This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action.
id: OMP:0007169
consider: OMP:0007881
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to peptides with antimicrobial activity. This class includes ribosomally synthesized peptides, nonribosomally synthesized peptides, and peptides with additional groups attached. **This term was made obsolete because the grouping was too broad to be informative. It combined antimicrobial agents with widely different modes of action.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: antimicrobial peptide resistance phenotype

altered resistance to host defense peptides
type: Class
subclass of: host defense peptides resistance phenotype
creation date: 2014-09-26T16:02:16Z
definition: An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control.
id: OMP:0007170
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more host defense peptides is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to host defense peptides

resistant to host defense peptide
type: Class
subclass of: host defense peptides resistance phenotype
creation date: 2014-09-26T16:02:16Z
definition: A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides.
id: OMP:0007171
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A host defense peptide resistance phenotype where a microbe is resistant to one or more antimicrobial peptides.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to host defense peptide

not resistant to host defense peptide
type: Class
subclass of: host defense peptides resistance phenotype
creation date: 2014-09-26T16:02:16Z
definition: A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides.
id: OMP:0007172
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A host defense peptide resistance phenotype where a microbe is sensitive to one or more host defense peptides.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to host defense peptide

decreased resistance to host defense peptides
type: Class
subclass of: altered resistance to host defense peptides
creation date: 2014-09-26T16:02:54Z
definition: An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control.
has_exact_synonym: Increased sensitivity to host defense peptide
id: OMP:0007173
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered host defense peptide resistance phenotype where resistance to is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to host defense peptides

increased resistance to host defense peptides
type: Class
subclass of: altered resistance to host defense peptides
creation date: 2014-09-26T16:02:54Z
definition: An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control.
id: OMP:0007174
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered host defense peptide resistance phenotype where resistance is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to host defense peptides

presence of aerobic respiration
type: Class
subclass of: aerobic respiration phenotype
creation date: 2014-09-29T14:00:51Z
definition: An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration.
id: OMP:0007175
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of aerobic respiration

absence of aerobic respiration
type: Class
subclass of: aerobic respiration phenotype
creation date: 2014-09-29T14:02:56Z
definition: An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration.
id: OMP:0007176
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of aerobic respiration

altered aerobic respiration
type: Class
subclass of: aerobic respiration phenotype
creation date: 2014-09-29T14:04:45Z
definition: An aerobic respiration phenotype that is altered relative to a designated control.
id: OMP:0007177
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An aerobic respiration phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered aerobic respiration

increased aerobic respiration
type: Class
subclass of: altered aerobic respiration
creation date: 2014-09-29T14:05:44Z
definition: An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control.
id: OMP:0007178
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased aerobic respiration

decreased aerobic respiration
type: Class
subclass of: altered aerobic respiration
creation date: 2014-09-29T14:06:33Z
definition: An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control.
id: OMP:0007179
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased aerobic respiration

abolished aerobic respiration
type: Class
subclass of: absence of aerobic respiration
subclass of: decreased aerobic respiration
creation date: 2014-09-29T14:07:17Z
definition: A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished.
id: OMP:0007180
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished aerobic respiration

presence of anaerobic respiration
type: Class
subclass of: anaerobic respiration phenotype
creation date: 2014-09-29T14:08:46Z
definition: An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration.
id: OMP:0007181
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of anaerobic respiration

absence of anaerobic respiration
type: Class
subclass of: anaerobic respiration phenotype
creation date: 2014-09-29T14:08:46Z
definition: An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration.
id: OMP:0007182
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of anaerobic respiration

altered anaerobic respiration
type: Class
subclass of: anaerobic respiration phenotype
creation date: 2014-09-29T14:08:46Z
definition: An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control.
id: OMP:0007183
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered anaerobic respiration

increased anaerobic respiration
type: Class
subclass of: altered anaerobic respiration
creation date: 2014-09-29T14:08:46Z
definition: An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control.
id: OMP:0007184
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased anaerobic respiration

decreased anaerobic respiration
type: Class
subclass of: altered anaerobic respiration
creation date: 2014-09-29T14:08:46Z
definition: An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control.
id: OMP:0007185
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased anaerobic respiration

abolished anaerobic respiration
type: Class
subclass of: absence of anaerobic respiration
subclass of: decreased anaerobic respiration
creation date: 2014-09-29T14:08:46Z
definition: A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished.
id: OMP:0007186
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished anaerobic respiration

quality (Interim)
type: Class
creation date: 2014-10-03T17:22:57Z
definition: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
id: OMP:0007187
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

altered_process_quality
type: Class
equivalent class: Class
  intersection of: PATO_0001236
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: PATO_0001236
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-10-03T17:27:01Z
definition: A quality which inheres in an process that is altered in same way relative to a designated control.
id: OMP:0007188
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A quality which inheres in an process that is altered in same way relative to a designated control.
database_cross_reference: OMP:DAS
database_cross_reference: PATO:0001236
annotated property: definition
annotated source: altered_process_quality

altered_relative_to
type: Class
subclass of: PATO_0000068
creation date: 2014-10-03T17:45:57Z
definition: A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity.
id: OMP:0007189
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered_relative_to

altered dinitrogen utilization
type: Class
subclass of: dinitrogen utilization phenotype
subclass of: altered nitrogen source utilization
creation date: 2014-10-04T01:42:58Z
definition: A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control.
id: OMP:0007190
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered dinitrogen utilization

absence of dinitrogen utilization
type: Class
subclass of: dinitrogen utilization phenotype
creation date: 2014-10-04T01:44:57Z
definition: A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen.
id: OMP:0007191
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of dinitrogen utilization

effect of non-nutrient environmental factors on population growth phenotype
type: Class
subclass of: population growth phenotype
creation date: 2014-10-04T18:41:07Z
definition: A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population.
id: OMP:0007192
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype related to how non-nutrient environmental factors affect growth of a microbial population.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: effect of non-nutrient environmental factors on population growth phenotype

altered_physical_object_quality
type: Class
equivalent class: Class
  intersection of: PATO_0001241
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: PATO_0001241
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2014-10-04T19:34:54Z
definition: A physical object quality that is altered relative to a designated control.
id: OMP:0007193
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A physical object quality that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered_physical_object_quality

biological process phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: biological_process
subclass of: microbial phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: biological_process
creation date: 2014-10-18T21:38:46Z
definition: A microbial phenotype that affects a biological process.
database_cross_reference: FYPO:0000300
database_cross_reference: GO:0008150
id: OMP:0007194
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that affects a biological process.
database_cross_reference: FYPO:0000300
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: biological process phenotype

biological process phenotype
type: Axiom
annotated target: FYPO:0000300
annotated source: biological process phenotype
annotated property: database_cross_reference

biological_process
type: Axiom
annotated target: GO:0008150
annotated source: biological process phenotype
annotated property: database_cross_reference

chemical resistance phenotype
type: Class
equivalent class: Class
  intersection of: biological process phenotype
  intersection of: Restriction
    on property: towards
    some values from: chemical entity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0001457
subclass of: population growth phenotype
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0001457
subclass of: Restriction
  on property: towards
  some values from: chemical entity
creation date: 2014-10-18T21:39:28Z
definition: A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity.
database_cross_reference: APO:0000087
id: OMP:0007195
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: chemical sensitivity phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

resistance to chemicals
type: Axiom
annotated target: APO:0000087
annotated source: chemical resistance phenotype
annotated property: database_cross_reference

Axiom
annotated target: A biological process phenotype related to the resistance or sensitivity of a microbe to a chemical entity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: chemical resistance phenotype

altered akinete formation
type: Class
equivalent class: Class
  intersection of: akinete formation phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_process_quality
subclass of: akinete formation phenotype
subclass of: altered asexual sporulation
subclass of: Restriction
  on property: has_quality
  some values from: altered_process_quality
creation date: 2014-10-20T15:08:04Z
definition: An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control.
id: OMP:0007196
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered akinete formation

cellular component phenotype
type: Class
equivalent class: Class
  intersection of: microbial phenotype
  intersection of: Restriction
    on property: inheres_in
    some values from: cellular_component
subclass of: microbial phenotype
subclass of: Restriction
  on property: inheres_in
  some values from: cellular_component
creation date: 2014-10-21T23:28:25Z
definition: A microbial phenotype that affects a quality of a cellular component.
database_cross_reference: CMPO:0000259
database_cross_reference: GO:0005575
id: OMP:0007197
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

cellular_component
type: Axiom
annotated target: GO:0005575
annotated source: cellular component phenotype
annotated property: database_cross_reference

cellular component phenotype
type: Axiom
annotated target: CMPO:0000259
annotated source: cellular component phenotype
annotated property: database_cross_reference

Axiom
annotated target: A microbial phenotype that affects a quality of a cellular component.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cellular component phenotype

presence of resistance to UV-A radiation
type: Class
subclass of: presence of UV-radiation resistance
creation date: 2015-02-04T21:53:26Z
definition: A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm).
id: OMP:0007198
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm).
database_cross_reference: ISO:21348
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of resistance to UV-A radiation

presence of resistance to UV-B radiation
type: Class
subclass of: presence of UV-radiation resistance
creation date: 2015-02-04T22:00:52Z
definition: A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm).
id: OMP:0007199
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm).
database_cross_reference: ISO:21348
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of resistance to UV-B radiation

presence of resistance to UV-C radiation
type: Class
subclass of: presence of UV-radiation resistance
creation date: 2015-02-04T22:02:13Z
definition: A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm).
id: OMP:0007200
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm).
database_cross_reference: ISO:21348
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of resistance to UV-C radiation

decreased resistance to UV-C radiation
type: Class
subclass of: decreased resistance to UV radiation
creation date: 2015-02-04T22:03:32Z
definition: A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control.
id: OMP:0007201
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to UV-C radiation

abolished resistance to UV-C radiation
type: Class
subclass of: decreased resistance to UV-C radiation
creation date: 2015-02-04T22:05:25Z
definition: A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished.
id: OMP:0007202
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to UV-C radiation

altered gene expression regulation
type: Class
subclass of: altered microbial phenotype
subclass of: gene expression regulation phenotype
creation date: 2015-02-05T11:12:46Z
definition: A gene expression regulation phenotype that is altered relative to a designated control.
id: OMP:0007203
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A gene expression regulation phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered gene expression regulation

decreased resistance to UV-A radiation
type: Class
subclass of: decreased resistance to UV radiation
creation date: 2015-02-05T11:30:34Z
definition: A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control.
id: OMP:0007204
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to UV-A radiation

decreased resistance to UV-B radiation
type: Class
subclass of: decreased resistance to UV radiation
creation date: 2015-02-05T11:31:00Z
definition: A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control.
id: OMP:0007205
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to UV-B radiation

increased resistance to UV-A
type: Class
subclass of: increased resistance to UV radiation
creation date: 2015-02-05T11:35:37Z
definition: An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control.
id: OMP:0007206
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to UV-A

increased resistance to UV-B
type: Class
subclass of: increased resistance to UV radiation
creation date: 2015-02-05T11:35:59Z
definition: An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control.
id: OMP:0007207
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to UV-B

increased resistance to UV-C
type: Class
subclass of: increased resistance to UV radiation
creation date: 2015-02-05T11:36:16Z
definition: An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control.
id: OMP:0007208
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to UV-C

presence of RecA-mediated homologous recombination
type: Class
subclass of: presence of homologous recombination
creation date: 2015-02-17T12:08:11Z
definition: A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein.
id: OMP:0007209
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of RecA-mediated homologous recombination

presence of lambda Red-mediated recombination
type: Class
subclass of: presence of homologous recombination
creation date: 2015-02-17T12:13:27Z
definition: A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo).
id: OMP:0007210
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of lambda Red-mediated recombination

altered trace element utilization
type: Class
subclass of: trace element utilization phenotype
subclass of: altered nutrient utilization
creation date: 2015-03-13T15:13:30Z
definition: A trace element utilization phenotype that is altered relative to a designated control.
id: OMP:0007211
has_exact_synonym: altered micronutrient utilization
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A trace element utilization phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered trace element utilization

altered phosphorus source utilization
type: Class
subclass of: phosphorus source utilization phenotype
subclass of: altered nutrient utilization
creation date: 2015-03-13T15:23:04Z
definition: A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control.
id: OMP:0007212
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered phosphorus source utilization

altered inorganic phosphorus source utilization
type: Class
subclass of: inorganic phosphorus source utilization
subclass of: altered phosphorus source utilization
creation date: 2015-03-13T15:25:43Z
definition: An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control.
id: OMP:0007213
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered inorganic phosphorus source utilization

altered organic phosphorus source utilization
type: Class
subclass of: organic phosphorus source utilization
subclass of: altered phosphorus source utilization
creation date: 2015-03-13T15:29:56Z
definition: An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control.
id: OMP:0007214
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered organic phosphorus source utilization

rifamycin resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2015-03-15T22:30:48Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds.
database_cross_reference: CHEBI:26580
id: OMP:0007215
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_narrow_synonym: rifabutin resistance phenotype
has_related_synonym: rifampicin resistance phenotype
has_narrow_synonym: rifapentine resistance phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:28077
annotated target: rifampicin resistance phenotype
annotated source: rifamycin resistance phenotype
annotated property: has_related_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compounds.
database_cross_reference: CHEBI:26580
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: rifamycin resistance phenotype

rifamycin
type: Axiom
annotated target: CHEBI:26580
annotated source: rifamycin resistance phenotype
annotated property: database_cross_reference

Axiom
database_cross_reference: CHEBI:45304
annotated target: rifapentine resistance phenotype
annotated source: rifamycin resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:45367
annotated target: rifabutin resistance phenotype
annotated source: rifamycin resistance phenotype
annotated property: has_narrow_synonym

altered rifamycin resistance
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: rifamycin resistance phenotype
creation date: 2015-03-15T22:32:58Z
definition: A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control.
id: OMP:0007216
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered rifamycin resistance

not resistant to rifamycin
type: Class
subclass of: rifamycin resistance phenotype
creation date: 2015-03-15T22:32:58Z
definition: A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins.
id: OMP:0007217
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to rifamycin

resistant to rifamycin
type: Class
subclass of: rifamycin resistance phenotype
creation date: 2015-03-15T22:32:58Z
definition: A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins.
id: OMP:0007218
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to rifamycin

decreased resistance to rifamycin
type: Class
subclass of: altered rifamycin resistance
creation date: 2015-03-15T22:37:30Z
definition: An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control.
id: OMP:0007219
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to rifamycin

increased resistance to rifamycin
type: Class
subclass of: altered rifamycin resistance
creation date: 2015-03-15T22:39:31Z
definition: An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control.
id: OMP:0007220
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to rifamycin

abolished resistance to rifamycin
type: Class
subclass of: not resistant to rifamycin
subclass of: decreased resistance to rifamycin
creation date: 2015-03-15T22:40:32Z
definition: A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished.
id: OMP:0007221
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to rifamycin

growth rate control of transcription
type: Class
subclass of: transcription regulation phenotype
creation date: 2015-05-20T16:23:34Z
definition: A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases.
id: OMP:0007222
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:11844765
annotated property: definition
annotated source: growth rate control of transcription

decreased spore germination efficiency
type: Class
subclass of: altered spore germination efficiency
creation date: 2015-06-01T16:03:03Z
definition: A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control.
id: OMP:0007223
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased spore germination efficiency

endospore location phenotype
type: Class
subclass of: endospore morphology phenotype
creation date: 2015-06-03T16:03:42Z
definition: An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium).
id: OMP:0007224
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium).
database_cross_reference: OMP:KDA
annotated property: definition
annotated source: endospore location phenotype

central location of endospore
type: Class
subclass of: endospore location phenotype
creation date: 2015-06-03T16:06:06Z
definition: An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium).
id: OMP:0007225
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium).
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: central location of endospore

terminal location of endospore
type: Class
subclass of: endospore location phenotype
creation date: 2015-06-04T15:40:39Z
definition: An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium).
id: OMP:0007226
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: terminal location of endospore

swollen sporangium
type: Class
subclass of: endospore location phenotype
creation date: 2015-06-04T15:42:45Z
definition: A xx.
id: OMP:0007227
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A xx.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: swollen sporangium

endospore morphology phenotype
type: Class
subclass of: spore morphology phenotype
creation date: 2015-06-04T16:05:37Z
definition: A spore morphology phenotype that is related to the form and structure of an endospore.
id: OMP:0007228
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A spore morphology phenotype that is related to the form and structure of an endospore.
database_cross_reference: CL:0000563
database_cross_reference: GO:0034301
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: endospore morphology phenotype

endospore external encapsulating structure phenotype
type: Class
subclass of: endospore morphology phenotype
creation date: 2015-06-04T16:17:34Z
definition: An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore.
database_cross_reference: GO:0043591
id: OMP:0007229
created by: dsiegele
has_obo_namespace: microbial_phenotype

endospore external encapsulating structure
type: Axiom
annotated target: GO:0043591
annotated source: endospore external encapsulating structure phenotype
annotated property: database_cross_reference

Axiom
annotated target: An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore.
database_cross_reference: GO:0043591
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: endospore external encapsulating structure phenotype

endospore exosporium phenotype
type: Class
subclass of: endospore external encapsulating structure phenotype
creation date: 2015-06-04T16:22:54Z
definition: An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid.
database_cross_reference: GO:0043592
id: OMP:0007230
created by: dsiegele
has_obo_namespace: microbial_phenotype

exosporium
type: Axiom
annotated target: GO:0043592
annotated source: endospore exosporium phenotype
annotated property: database_cross_reference

Axiom
annotated target: An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid.
database_cross_reference: GO:0043592
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: endospore exosporium phenotype

presence of an exosporium
type: Class
subclass of: endospore exosporium phenotype
creation date: 2015-06-04T16:29:52Z
definition: An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore.
id: OMP:0007231
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of an exosporium

absence of an exosporium
type: Class
subclass of: endospore exosporium phenotype
creation date: 2015-06-04T16:29:52Z
definition: An exosporium phenotype where the mature endospore lacks an exosporium.
id: OMP:0007232
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An exosporium phenotype where the mature endospore lacks an exosporium.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of an exosporium

absence of binary fission
type: Class
subclass of: binary fission phenotype
creation date: 2015-06-20T18:21:53Z
definition: A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission.
id: OMP:0007233
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of binary fission

absence of budding
type: Class
subclass of: budding phenotype
creation date: 2015-06-20T18:24:03Z
definition: A budding phenotype where an organism lacks to the ability to multiply by the process of budding.
id: OMP:0007234
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A budding phenotype where an organism lacks to the ability to multiply by the process of budding.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of budding

absence of multiple fission
type: Class
subclass of: multiple fission phenotype
creation date: 2015-06-20T18:25:24Z
definition: A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission.
id: OMP:0007235
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of multiple fission

absence of asexual sporulation
type: Class
subclass of: asexual sporulation phenotype
creation date: 2015-06-20T18:26:28Z
definition: An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores.
id: OMP:0007236
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores.
database_cross_reference: OMP:JCH
annotated property: definition
annotated source: absence of asexual sporulation

bacteriophage sensitivity phenotype
type: Class
subclass of: host-virus interaction phenotype
creation date: 2015-06-29T17:35:29Z
definition: A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage.
id: OMP:0007237
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: bacteriophage sensitivity phenotype

sensitive to bacteriophage
type: Class
subclass of: bacteriophage sensitivity phenotype
creation date: 2015-06-29T17:56:42Z
definition: A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage.
id: OMP:0007238
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: sensitive to bacteriophage

not sensitive to bacteriophage
type: Class
subclass of: bacteriophage sensitivity phenotype
creation date: 2015-06-29T18:02:50Z
definition: A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage.
id: OMP:0007239
has_exact_synonym: bacteriophage resistance
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not sensitive to bacteriophage

decreased bacteriophage absorption
type: Class
subclass of: decreased sensitivity to bacteriophage
creation date: 2015-06-29T18:05:20Z
definition: An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage.
id: OMP:0007240
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased bacteriophage absorption

post-injection defect
type: Class
subclass of: decreased sensitivity to bacteriophage
creation date: 2015-06-29T18:09:11Z
definition: An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection.
id: OMP:0007241
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: post-injection defect

altered host-virus interaction
type: Class
subclass of: host-virus interaction phenotype
subclass of: altered microbial phenotype
creation date: 2015-07-04T00:13:56Z
definition: A host-virus interaction phenotype that is altered relative to a designated control.
id: OMP:0007242
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A host-virus interaction phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered host-virus interaction

altered bacteriophage sensitivity
type: Class
subclass of: bacteriophage sensitivity phenotype
subclass of: altered host-virus interaction
creation date: 2015-07-04T00:16:40Z
definition: A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control.
id: OMP:0007243
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered bacteriophage sensitivity

decreased sensitivity to bacteriophage
type: Class
subclass of: altered bacteriophage sensitivity
creation date: 2015-07-04T00:18:12Z
definition: An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control.
id: OMP:0007244
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased sensitivity to bacteriophage

abolished sensitivity to bacteriophage
type: Class
subclass of: not sensitive to bacteriophage
subclass of: decreased sensitivity to bacteriophage
creation date: 2015-07-04T00:20:54Z
definition: A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished.
id: OMP:0007245
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished sensitivity to bacteriophage

not resistant to a chemical
type: Class
subclass of: chemical resistance phenotype
creation date: 2015-07-16T00:36:34Z
definition: A chemical resistance phenotype where a microbe is not resistant to a chemical.
id: OMP:0007246
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemical resistance phenotype where a microbe is not resistant to a chemical.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to a chemical

resistant to a chemical
type: Class
subclass of: chemical resistance phenotype
creation date: 2015-07-16T00:36:34Z
definition: A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical.
id: OMP:0007247
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemical resistance phenotype where growth and reproduction of a microbe occurs in the presence of a chemical.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to a chemical

altered resistance to chemical
type: Class
subclass of: altered population growth
subclass of: chemical resistance phenotype
creation date: 2015-07-16T00:36:34Z
definition: A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control.
id: OMP:0007248
has_exact_synonym: altered chemical sensitivity
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemical resistance phenotype where resistance or sensitivity of a microbe to a chemical is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to chemical

decreased resistance to a chemical
type: Class
subclass of: altered resistance to chemical
has_exact_synonym: increased sensitivity to a chemical
creation date: 2015-07-16T00:42:17Z
definition: An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control.
id: OMP:0007249
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered chemical resistance phenotype where the resistance of a microbe to a chemical is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to a chemical

increased resistance to a chemical
type: Class
subclass of: altered resistance to chemical
creation date: 2015-07-16T00:42:17Z
definition: An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control.
id: OMP:0007250
has_exact_synonym: decreased sensitivity to a chemical
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered chemical resistance phenotype where the resistance of a microbe to a chemical is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to a chemical

abolished chemical sensitivity
type: Class
creation date: 2015-07-16T00:42:17Z
definition: An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished.
comment: Chemical sensitivity phenotype and its child terms were renamed as chemical resistance phenotypes to be consistent with other branches of OMP. Other terms in this branch were redefined, but this term was made obsolete and replaced by OMP:0007250 ! increased resistance to a chemical. When using OMP:0007250 for annotations enter the database identifier for the specific chemical in the Annotation Extension field.
term replaced by: OMP:0007250
id: OMP:0007251
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished chemical sensitivity

colonization of a host phenotype
type: Class
subclass of: microbe-host interaction phenotype
creation date: 2015-07-31T13:22:28Z
definition: A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism.
id: OMP:0007252
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: colonization of a host phenotype

presence of colonization of a host
type: Class
subclass of: colonization of a host phenotype
creation date: 2015-07-31T13:25:08Z
definition: A colonization of a host phenotype where a microbe is able to colonize a host organism.
id: OMP:0007253
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A colonization of a host phenotype where a microbe is able to colonize a host organism.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: presence of colonization of a host

absence of colonization of a host
type: Class
subclass of: colonization of a host phenotype
creation date: 2015-07-31T13:25:08Z
definition: A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism.
id: OMP:0007254
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: absence of colonization of a host

altered colonization of a host
type: Class
subclass of: colonization of a host phenotype
subclass of: altered microbe-host interaction
creation date: 2015-07-31T13:25:08Z
definition: A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
id: OMP:0007255
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered colonization of a host

increased colonization of a host
type: Class
subclass of: altered colonization of a host
creation date: 2015-07-31T13:26:07Z
definition: An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
id: OMP:0007256
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased colonization of a host

decreased colonization of a host
type: Class
subclass of: altered colonization of a host
creation date: 2015-07-31T13:26:07Z
definition: An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
id: OMP:0007257
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased colonization of a host

abolished colonization of a host
type: Class
subclass of: absence of colonization of a host
subclass of: decreased colonization of a host
creation date: 2015-07-31T13:26:07Z
definition: A decreased colonization of a host phenotype where colonization of a host organism is abolished.
id: OMP:0007258
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased colonization of a host phenotype where colonization of a host organism is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished colonization of a host

microbial cell viability phenotype
type: Class
subclass of: cellular physical quality phenotype
creation date: 2015-07-31T13:47:33Z
definition: A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions.
id: OMP:0007259
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: cell viability
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
database_cross_reference: FYPO:0000004
annotated target: cell viability
annotated source: microbial cell viability phenotype
annotated property: has_exact_synonym

Axiom
annotated target: A cell phenotype related to the ability of a microbial cell to survive and go on to grow and reproduce under the specified conditions.
database_cross_reference: FYPO:0000004
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: microbial cell viability phenotype

altered microbial cell viability
type: Class
equivalent class: Class
  intersection of: microbial cell viability phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: microbial cell viability phenotype
subclass of: altered cellular physical quality phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2015-07-31T14:00:54Z
definition: A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control.
id: OMP:0007260
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell viability phenotype where under the specified conditions the viability of a microbial cell is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered microbial cell viability

decreased cell viability
type: Class
subclass of: altered microbial cell viability
creation date: 2015-07-31T14:00:54Z
definition: An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control.
id: OMP:0007261
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased cell viability

increased cell viability
type: Class
subclass of: altered microbial cell viability
creation date: 2015-07-31T14:00:54Z
definition: An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control.
id: OMP:0007262
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased cell viability

viable but nonculturable cell
type: Class
subclass of: altered microbial cell viability
creation date: 2015-07-31T14:00:54Z
id: OMP:0007263
has_obo_namespace: microbial_phenotype
created by: siegele

drug-dependent population growth phenotype
type: Class
subclass of: population growth phenotype
creation date: 2015-08-03T14:04:45Z
definition: A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium.
id: OMP:0007264
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: drug-dependent population growth phenotype

presence of drug-dependent population growth
type: Class
subclass of: drug-dependent population growth phenotype
creation date: 2015-08-03T14:07:51Z
definition: A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium.
id: OMP:0007265
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of drug-dependent population growth

absence of drug-dependent population growth
type: Class
subclass of: drug-dependent population growth phenotype
creation date: 2015-08-03T14:07:51Z
definition: A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium.
id: OMP:0007266
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of drug-dependent population growth

altered drug-dependence of population growth
type: Class
subclass of: altered population growth
subclass of: drug-dependent population growth phenotype
creation date: 2015-08-03T14:07:51Z
definition: A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control.
id: OMP:0007267
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control.
database_cross_reference: OMP:REF
annotated property: definition
annotated source: altered drug-dependence of population growth

increased drug-dependence of population growth
type: Class
subclass of: altered drug-dependence of population growth
creation date: 2015-08-03T14:07:51Z
definition: An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control.
id: OMP:0007268
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased drug-dependence of population growth

decreased drug-dependence of population growth
type: Class
subclass of: altered drug-dependence of population growth
creation date: 2015-08-03T14:07:51Z
definition: An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control.
id: OMP:0007269
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased drug-dependence of population growth

abolished drug-dependence of population growth
type: Class
subclass of: absence of drug-dependent population growth
subclass of: decreased drug-dependence of population growth
creation date: 2015-08-03T14:07:51Z
definition: A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished.
id: OMP:0007270
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished drug-dependence of population growth

increased sensitivity to bacteriophage
type: Class
subclass of: altered bacteriophage sensitivity
creation date: 2015-08-11T16:54:13Z
definition: An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control.
id: OMP:0007271
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased sensitivity to bacteriophage

decreased absorption of bacteriocin
type: Class
subclass of: increased resistance to bacteriocin
creation date: 2015-09-24T20:41:51Z
definition: An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells.
id: OMP:0007272
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased absorption of bacteriocin

bacteriocin tolerant
type: Class
subclass of: increased resistance to bacteriocin
creation date: 2015-09-24T20:45:00Z
definition: An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects.
id: OMP:0007273
has_narrow_synonym: colicin tolerant
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:4860908
annotated property: definition
annotated source: bacteriocin tolerant

mixotrophic carbon source utilization
type: Class
subclass of: carbon source utilization phenotype
creation date: 2015-09-28T15:12:37Z
definition: A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode.
id: OMP:0007274
has_obo_namespace: microbial_phenotype
has_broad_synonym: mixotrophy
created by: siegele

Axiom
annotated target: A carbon source utilization phenotype where a microbe can switch between using organic and inorganic sources of carbon instead of having a single trophic mode.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: mixotrophic carbon source utilization

altered frequency of reversing direction of flagellar rotation
type: Class
subclass of: altered taxis
creation date: 2015-10-17T19:56:02Z
definition: An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control.
id: OMP:0007275
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered frequency of reversing direction of flagellar rotation

increased threshold for positive chemotaxis
type: Class
subclass of: decreased chemotaxis
creation date: 2015-11-07T13:32:21Z
definition: A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control.
id: OMP:0007276
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased threshold for positive chemotaxis

cell wall morphology phenotype
type: Class
creation date: 2015-11-11T15:41:37Z
term replaced by: OMP:0005233
id: OMP:0007277
definition: This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
database_cross_reference: GO:0005618
database_cross_reference: OMP:DAS
annotated target: This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis.
annotated property: definition
annotated source: cell wall morphology phenotype

disproportionation of thiosulfate
type: Class
subclass of: chemolithotrophic
creation date: 2015-11-12T00:46:14Z
definition: A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide.
comment: Disproportionation of thiosulfate is the reaction: thiosulfate + H2O --> SO42- + HS- + H+.
id: OMP:0007278
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:10919837
annotated property: definition
annotated source: disproportionation of thiosulfate

altered protein activity phenotype
type: Class
subclass of: altered microbial phenotype
creation date: 2016-01-07T22:48:43Z
definition: A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control.
id: OMP:0007279
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered protein activity phenotype

presence of enzymatic activity
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-01-09T18:04:12Z
definition: An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism.
id: OMP:0007280
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of enzymatic activity

absence of enzymatic activity
type: Class
subclass of: enzymatic activity phenotype
creation date: 2016-01-09T18:05:38Z
definition: An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism.
id: OMP:0007281
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of enzymatic activity

presence of UV-radiation resistance
type: Class
subclass of: resistance to UV radiation phenotype
creation date: 2016-01-09T18:37:25Z
definition: A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation.
id: OMP:0007282
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of UV-radiation resistance

absence of UV radiation resistance
type: Class
subclass of: resistance to UV radiation phenotype
creation date: 2016-01-09T18:39:51Z
definition: A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation.
id: OMP:0007283
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of UV radiation resistance

presence of virulence
type: Class
subclass of: virulence phenotype
creation date: 2016-01-09T18:47:01Z
definition: A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host).
id: OMP:0007284
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of virulence

laccase activity phenotype
type: Class
subclass of: enzymatic activity phenotype
subclass of: differential test phenotype
creation date: 2016-01-10T00:30:53Z
definition: A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor.
id: OMP:0007285
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Laccase is involved in the synthesis of fungal melanin.
has_related_synonym: benzenediol:oxygen oxidoreductase activity
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: laccase activity phenotype

Axiom
database_cross_reference: EC:1.10.3.2
annotated target: benzenediol:oxygen oxidoreductase activity
annotated source: laccase activity phenotype
annotated property: has_related_synonym

presence of laccase activity
type: Class
subclass of: laccase activity phenotype
creation date: 2016-01-10T00:36:59Z
definition: A laccase phenotype where an organism exhibits laccase activity.
id: OMP:0007286
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A laccase phenotype where an organism exhibits laccase activity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of laccase activity

absence of laccase activity
type: Class
subclass of: laccase activity phenotype
creation date: 2016-01-10T00:37:17Z
definition: A laccase phenotype where an organism doesn't exhibit laccase activity.
id: OMP:0007287
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A laccase phenotype where an organism doesn't exhibit laccase activity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of laccase activity

altered laccase activity
type: Class
subclass of: altered enzymatic activity
subclass of: altered differential test result
subclass of: laccase activity phenotype
creation date: 2016-01-10T00:37:57Z
definition: A laccase activity phenotype where laccase activity is altered relative to a designated control.
id: OMP:0007288
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A laccase activity phenotype where laccase activity is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered laccase activity

increased laccase activity
type: Class
equivalent class: Class
  intersection of: altered laccase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002304
subclass of: altered laccase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002304
creation date: 2016-01-10T00:45:01Z
definition: An altered laccase activity phenotype where laccase activity is increased relative to a designated control.
id: OMP:0007289
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered laccase activity phenotype where laccase activity is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased laccase activity

decreased laccase activity
type: Class
equivalent class: Class
  intersection of: altered laccase activity
  intersection of: Restriction
    on property: has_quality
    some values from: PATO_0002302
subclass of: altered laccase activity
subclass of: Restriction
  on property: has_quality
  some values from: PATO_0002302
creation date: 2016-01-10T00:45:01Z
definition: An altered laccase activity phenotype where laccase activity is decreased relative to a designated control.
id: OMP:0007290
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered laccase activity phenotype where laccase activity is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased laccase activity

abolished laccase activity
type: Class
subclass of: absence of laccase activity
subclass of: decreased laccase activity
creation date: 2016-01-10T00:45:01Z
definition: A decreased laccase activity phenotype where laccase activity is abolished.
id: OMP:0007291
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased laccase activity phenotype where laccase activity is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished laccase activity

altered spore germination efficiency
type: Class
equivalent class: Class
  intersection of: spore germination phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: altered microbial phenotype
subclass of: altered spore germination
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2016-01-10T00:55:26Z
definition: A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control.
id: OMP:0007292
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered spore germination efficiency

increased spore germination efficiency
type: Class
subclass of: altered spore germination efficiency
creation date: 2016-01-10T00:57:49Z
definition: A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control.
id: OMP:0007293
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased spore germination efficiency

diazonium blue B staining phenotype
type: Class
subclass of: cell staining phenotype
creation date: 2016-01-29T22:48:37Z
definition: A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts.
database_cross_reference: APO:0000061
id: OMP:0007294
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: fast blue B staining phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:87629
annotated target: fast blue B staining phenotype
annotated source: diazonium blue B staining phenotype
annotated property: has_exact_synonym

Axiom
annotated target: A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:60081
database_cross_reference: doi:10.1099/00207713-31-2-204
annotated property: definition
annotated source: diazonium blue B staining phenotype

colony color
type: Axiom
annotated target: APO:0000061
annotated source: diazonium blue B staining phenotype
annotated property: database_cross_reference

presence of diazonium blue B staining
type: Class
subclass of: diazonium blue B staining phenotype
creation date: 2016-01-29T23:13:37Z
definition: A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B.
id: OMP:0007295
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of diazonium blue B staining

absence of diazonium blue B staining
type: Class
subclass of: diazonium blue B staining phenotype
creation date: 2016-01-29T23:13:37Z
definition: A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B.
id: OMP:0007296
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of diazonium blue B staining

altered diazonium blue B staining
type: Class
subclass of: diazonium blue B staining phenotype
subclass of: altered cell staining phenotype
creation date: 2016-01-29T23:13:37Z
definition: A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control.
id: OMP:0007297
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered diazonium blue B staining

presence of acid-fast stain
type: Class
subclass of: acid-fast staining phenotype
creation date: 2016-01-29T23:18:08Z
definition: An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
id: OMP:0007298
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of acid-fast stain

absence of acid-fast stain
type: Class
subclass of: acid-fast staining phenotype
creation date: 2016-01-29T23:19:38Z
definition: An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
id: OMP:0007299
has_obo_namespace: microbial_phenotype
has_exact_synonym: non-acid-fast staining
created by: siegele

Axiom
annotated target: An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of acid-fast stain

altered acid-fast stain
type: Class
subclass of: acid-fast staining phenotype
subclass of: altered cell staining phenotype
creation date: 2016-01-29T23:29:27Z
definition: An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control.
id: OMP:0007300
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered acid-fast stain

decreased diazonium blue B staining
type: Class
subclass of: altered diazonium blue B staining
creation date: 2016-01-30T00:33:19Z
definition: An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control.
id: OMP:0007301
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased diazonium blue B staining

increased diazonium blue B staining
type: Class
subclass of: altered diazonium blue B staining
creation date: 2016-01-30T00:33:19Z
definition: An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control.
id: OMP:0007302
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased diazonium blue B staining

abolished diazonium blue B staining
type: Class
subclass of: absence of diazonium blue B staining
subclass of: decreased diazonium blue B staining
creation date: 2016-01-30T13:32:56Z
definition: A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished.
id: OMP:0007303
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished diazonium blue B staining

altered cell staining phenotype
type: Class
subclass of: cell staining phenotype
subclass of: altered microbial phenotype
creation date: 2016-01-31T00:30:08Z
definition: A cell staining phenotype that is altered relative to a designated control.
id: OMP:0007304
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A cell staining phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell staining phenotype

altered utilization of inorganic nitrogen source
type: Class
subclass of: inorganic nitrogen source utilization phenotype
subclass of: altered nitrogen source utilization
creation date: 2016-01-31T00:41:26Z
definition: An inorganic nitrogen source utilization phenotype that is altered relative to a designated control.
id: OMP:0007305
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An inorganic nitrogen source utilization phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered utilization of inorganic nitrogen source

presence of inorganic nitrogen source utilization
type: Class
subclass of: inorganic nitrogen source utilization phenotype
creation date: 2016-01-31T00:43:21Z
definition: An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen.
id: OMP:0007306
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of inorganic nitrogen source utilization

absence of inorganic nitrogen utilization
type: Class
subclass of: inorganic nitrogen source utilization phenotype
creation date: 2016-01-31T00:44:37Z
definition: An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen.
id: OMP:0007307
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of inorganic nitrogen utilization

cell death phenotype
type: Class
subclass of: cellular process phenotype
creation date: 2016-02-02T14:15:49Z
definition: A biological process phenotype that relates to the cessation of life of an individual cell.
database_cross_reference: APO:0000312
id: OMP:0007308
created by: dsiegele
has_obo_namespace: microbial_phenotype

cell death
type: Axiom
annotated target: APO:0000312
annotated source: cell death phenotype
annotated property: database_cross_reference

Axiom
annotated target: A biological process phenotype that relates to the cessation of life of an individual cell.
database_cross_reference: APO:0000312
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cell death phenotype

apoptosis phenotype
type: Class
subclass of: cell death phenotype
creation date: 2016-02-02T14:27:37Z
definition: An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process.
database_cross_reference: GO:0006915
id: OMP:0007309
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: APO:0000155
annotated target: An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: apoptosis phenotype

apoptotic process
type: Axiom
annotated target: GO:0006915
annotated source: apoptosis phenotype
annotated property: database_cross_reference

absence of apoptosis
type: Class
subclass of: apoptosis phenotype
creation date: 2016-02-02T14:31:24Z
definition: An apoptosis phenotype where a cell or cells cannot undergo apoptosis.
id: OMP:0007310
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An apoptosis phenotype where a cell or cells cannot undergo apoptosis.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of apoptosis

presence of apoptosis
type: Class
subclass of: apoptosis phenotype
creation date: 2016-02-02T14:31:24Z
definition: An apoptosis phenotype where a cell or cells can undergo apoptosis.
id: OMP:0007311
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An apoptosis phenotype where a cell or cells can undergo apoptosis.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of apoptosis

altered apoptosis
type: Class
subclass of: apoptosis phenotype
subclass of: altered cell death
creation date: 2016-02-02T14:31:24Z
definition: An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control.
id: OMP:0007312
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered apoptosis

decreased apoptosis
type: Class
subclass of: altered apoptosis
creation date: 2016-02-02T14:58:50Z
definition: An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control.
id: OMP:0007313
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased apoptosis

increased apoptosis
type: Class
subclass of: altered apoptosis
creation date: 2016-02-02T14:58:50Z
definition: An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control.
id: OMP:0007314
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased apoptosis

population morphology phenotype
type: Class
subclass of: population phenotype
creation date: 2016-02-05T20:20:28Z
definition: A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm.
id: OMP:0007315
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: population morphology phenotype

abolished superoxide dismutase activity
type: Class
subclass of: absence of superoxide dismutase activity
subclass of: decreased superoxide dismutase activity
creation date: 2016-02-23T02:09:35Z
definition: A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished.
id: OMP:0007316
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished superoxide dismutase activity

abolished protein kinase A activity
type: Class
subclass of: absence of protein kinase A activity
subclass of: decreased protein kinase A activity
creation date: 2016-02-23T02:13:30Z
definition: A decreased protein kinase A activity phenotype where the activity is abolished.
id: OMP:0007317
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased protein kinase A activity phenotype where the activity is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished protein kinase A activity

abolished ferric reductase activity
type: Class
subclass of: absence of ferric reductase activity
subclass of: decreased ferric reductase activity
creation date: 2016-02-23T02:16:03Z
definition: A decreased ferric reductase activity phenotype where ferric reductase activity is abolished.
id: OMP:0007318
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased ferric reductase activity phenotype where ferric reductase activity is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished ferric reductase activity

mucoid colony surface phenotype
type: Class
subclass of: colony surface phenotype
creation date: 2016-02-25T18:35:28Z
definition: A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony.
id: OMP:0007319
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: mucoid colony surface phenotype

absence of mucoid colonies
type: Class
subclass of: mucoid colony surface phenotype
creation date: 2016-02-25T18:43:57Z
definition: A mucoid colony phenotype where the organism forms nonmucoid colonies.
id: OMP:0007320
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A mucoid colony phenotype where the organism forms nonmucoid colonies.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of mucoid colonies

altered mucoid colony phenotype
type: Class
subclass of: mucoid colony surface phenotype
creation date: 2016-02-25T18:44:52Z
definition: A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control.
id: OMP:0007321
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered mucoid colony phenotype

increased mucoidy
type: Class
subclass of: altered mucoid colony phenotype
creation date: 2016-02-25T18:46:37Z
id: OMP:0007322
has_obo_namespace: microbial_phenotype
created by: siegele

decreased mucoidy
type: Class
subclass of: altered mucoid colony phenotype
creation date: 2016-02-25T18:46:37Z
definition: An altered mucoid colony pheotype where colonies are less mucoid than a designated control.
id: OMP:0007323
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered mucoid colony pheotype where colonies are less mucoid than a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased mucoidy

abolished mucoidy
type: Class
subclass of: absence of mucoid colonies
subclass of: decreased mucoidy
creation date: 2016-02-25T18:46:37Z
definition: A decreased mucoidy phenotype where mucoid colonies are abolished.
id: OMP:0007324
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased mucoidy phenotype where mucoid colonies are abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished mucoidy

absence of inorganic sulfur utilization
type: Class
subclass of: sulfur source utilization phenotype
creation date: 2016-02-25T22:42:30Z
definition: A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur.
id: OMP:0007325
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of inorganic sulfur utilization

absence of organic sulfur utilization
type: Class
subclass of: sulfur source utilization phenotype
creation date: 2016-02-25T22:42:30Z
definition: A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur.
id: OMP:0007326
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of organic sulfur utilization

bud morphology phenotype
type: Class
subclass of: cell morphology phenotype
creation date: 2016-05-21T22:43:21Z
definition: A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding.
database_cross_reference: APO:0000212
database_cross_reference: GO:0005933
id: OMP:0007327
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

cellular bud
type: Axiom
annotated target: GO:0005933
annotated source: bud morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding.
database_cross_reference: GO:0005933
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: bud morphology phenotype

bud morphology
type: Axiom
annotated target: APO:0000212
annotated source: bud morphology phenotype
annotated property: database_cross_reference

altered bud morphology
type: Class
subclass of: altered cell morphology
subclass of: bud morphology phenotype
creation date: 2016-05-21T22:52:05Z
definition: A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control.
id: OMP:0007328
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered bud morphology

bud neck morphology
type: Class
subclass of: bud morphology phenotype
creation date: 2016-05-21T22:59:29Z
definition: A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell.
database_cross_reference: APO:0000056
id: OMP:0007329
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell.
database_cross_reference: GO:0005935
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: bud neck morphology

bud neck morphology
type: Axiom
annotated target: APO:0000056
annotated source: bud neck morphology
annotated property: database_cross_reference

altered bud neck morphology
type: Class
subclass of: altered bud morphology
subclass of: bud neck morphology
creation date: 2016-05-21T23:02:47Z
definition: A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control.
id: OMP:0007330
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered bud neck morphology

abolished apoptosis
type: Class
subclass of: decreased apoptosis
creation date: 2016-05-26T23:29:02Z
definition: A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished.
id: OMP:0007331
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished apoptosis

cellular process phenotype
type: Class
subclass of: biological process phenotype
creation date: 2016-05-27T23:03:44Z
definition: A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell.
database_cross_reference: FYPO:0000114
id: OMP:0007332
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell.
database_cross_reference: GO:0009987
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cellular process phenotype

cellular process phenotype
type: Axiom
annotated target: FYPO:0000114
annotated source: cellular process phenotype
annotated property: database_cross_reference

autophagy phenotype
type: Class
subclass of: cellular process phenotype
creation date: 2016-05-27T23:08:08Z
definition: A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm.
id: OMP:0007333
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: autolysosome formation
has_narrow_synonym: autophagosome formation
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm.
database_cross_reference: GO:0006914
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: autophagy phenotype

autophagic vesicle formation phenotype
type: Class
subclass of: autophagy phenotype
creation date: 2016-05-27T23:09:01Z
definition: An autophagy phenotype related to the formation of autophagic vesicles.
id: OMP:0007334
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An autophagy phenotype related to the formation of autophagic vesicles.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: autophagic vesicle formation phenotype

altered autophagic vesicle formation
type: Class
subclass of: autophagic vesicle formation phenotype
subclass of: altered autophagy
creation date: 2016-05-27T23:09:26Z
definition: An autophagic vesicle formation phenotype that is altered relative to a designated control.
id: OMP:0007335
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An autophagic vesicle formation phenotype that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered autophagic vesicle formation

increased autophagic vesicle formation
type: Class
subclass of: altered autophagic vesicle formation
creation date: 2016-05-27T23:10:53Z
definition: An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control.
id: OMP:0007336
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased autophagic vesicle formation

decreased autophagic vesicle formation
type: Class
subclass of: altered autophagic vesicle formation
creation date: 2016-05-27T23:10:53Z
definition: An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control.
id: OMP:0007337
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased autophagic vesicle formation

abolished autophagic vesicle formation
type: Class
subclass of: decreased autophagic vesicle formation
creation date: 2016-05-27T23:10:53Z
definition: A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished.
id: OMP:0007338
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished autophagic vesicle formation

nuclear morphology phenotype
type: Class
subclass of: cell morphology phenotype
creation date: 2016-05-28T02:18:45Z
definition: A cell morphology phenotype related to the size, shape, or appearance of the nucleus.
database_cross_reference: APO:0000057
id: OMP:0007339
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

nuclear morphology
type: Axiom
annotated target: APO:0000057
annotated source: nuclear morphology phenotype
annotated property: database_cross_reference

Axiom
annotated target: A cell morphology phenotype related to the size, shape, or appearance of the nucleus.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nuclear morphology phenotype

altered nuclear morphology
type: Class
subclass of: altered cell morphology
subclass of: nuclear morphology phenotype
creation date: 2016-05-28T02:21:05Z
definition: A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control.
id: OMP:0007340
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered nuclear morphology

altered cell death
type: Class
subclass of: cell death phenotype
subclass of: altered cellular process
creation date: 2016-05-28T02:24:07Z
definition: A cell death phenotype where death of a cell or cells is altered relative to a designated control.
id: OMP:0007341
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell death phenotype where death of a cell or cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell death

altered cellular process
type: Class
subclass of: cellular process phenotype
subclass of: altered biological process
creation date: 2016-05-28T02:25:03Z
definition: A cellular process phenotype where a cellular process is altered relative to a designated control.
id: OMP:0007342
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype where a cellular process is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cellular process

altered autophagy
type: Class
subclass of: autophagy phenotype
subclass of: altered cellular process
creation date: 2016-05-28T02:28:04Z
definition: An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control.
id: OMP:0007343
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered autophagy

nuclear position phenotype
type: Class
subclass of: cell morphology phenotype
creation date: 2016-05-28T02:34:23Z
definition: A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells.
id: OMP:0007344
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells.
database_cross_reference: APO:0000118
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nuclear position phenotype

altered nuclear position
type: Class
equivalent class: Class
  intersection of: nuclear position phenotype
  intersection of: Restriction
    on property: has_quality
    some values from: altered_relative_to
subclass of: altered cell morphology
subclass of: nuclear position phenotype
subclass of: Restriction
  on property: has_quality
  some values from: altered_relative_to
creation date: 2016-05-28T02:36:59Z
definition: A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control.
id: OMP:0007345
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered nuclear position

protein secretion phenotype
type: Class
subclass of: biological process phenotype
creation date: 2016-06-08T17:02:00Z
definition: A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell.
id: OMP:0007346
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: exocytosis
has_obo_namespace: microbial_phenotype
has_narrow_synonym: protein secretion
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell.
database_cross_reference: GO:0009306
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: protein secretion phenotype

Axiom
database_cross_reference: APO:0000078
annotated target: protein secretion
annotated source: protein secretion phenotype
annotated property: has_narrow_synonym

altered protein secretion
type: Class
subclass of: protein secretion phenotype
creation date: 2016-06-09T22:42:13Z
definition: A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control.
id: OMP:0007347
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered protein secretion

increased protein secretion
type: Class
subclass of: altered protein secretion
creation date: 2016-06-09T22:43:50Z
definition: An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control.
database_cross_reference: FYPO:0000539
id: OMP:0007348
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased protein secretion

increased protein secretion
type: Axiom
annotated target: FYPO:0000539
annotated source: increased protein secretion
annotated property: database_cross_reference

decreased protein secretion
type: Class
subclass of: altered protein secretion
creation date: 2016-06-09T22:47:42Z
definition: An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control.
database_cross_reference: FYPO:0000538
id: OMP:0007349
has_obo_namespace: microbial_phenotype
created by: siegele

decreased protein secretion
type: Axiom
annotated target: FYPO:0000538
annotated source: decreased protein secretion
annotated property: database_cross_reference

Axiom
annotated target: An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased protein secretion

abolished protein secretion
type: Class
subclass of: decreased protein secretion
creation date: 2016-06-09T22:48:16Z
definition: A decreased protein secretion phenotype where the process of protein secretion is abolished.
database_cross_reference: FYPO:0000537
id: OMP:0007350
has_obo_namespace: microbial_phenotype
created by: siegele

abolished protein secretion
type: Axiom
annotated target: FYPO:0000537
annotated source: abolished protein secretion
annotated property: database_cross_reference

Axiom
annotated target: A decreased protein secretion phenotype where the process of protein secretion is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished protein secretion

altered biological process
type: Class
subclass of: altered microbial phenotype
subclass of: biological process phenotype
creation date: 2016-06-09T22:50:27Z
definition: A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control.
id: OMP:0007351
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered biological process

altered cell development
type: Class
subclass of: cell development phenotype
subclass of: altered cellular process
creation date: 2016-06-09T22:58:20Z
definition: A cell development phenotype where development of a cell or cells is altered relative to a designated control.
id: OMP:0007352
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell development phenotype where development of a cell or cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell development

altered spore germination
type: Class
subclass of: spore germination phenotype
creation date: 2016-06-09T23:07:17Z
definition: A spore germination phenotype where germination of a spore or spores is altered relative to a designated control.
id: OMP:0007353
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A spore germination phenotype where germination of a spore or spores is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered spore germination

altered amino acid requirement
type: Class
subclass of: amino acid requirement
subclass of: altered growth factor requirement
creation date: 2016-06-16T15:56:40Z
definition: An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control.
id: OMP:0007354
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered amino acid requirement

abolished amino acid requirement
type: Class
subclass of: decreased amino acid requirement
creation date: 2016-06-16T16:20:47Z
definition: A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished.
id: OMP:0007355
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished amino acid requirement

quinone resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-06-17T01:16:57Z
definition: An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds.
database_cross_reference: CHEBI:36141
id: OMP:0007356
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_narrow_synonym: mitomycin resistance phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:25357
annotated target: mitomycin resistance phenotype
annotated source: quinone resistance phenotype
annotated property: has_narrow_synonym

quinone
type: Axiom
annotated target: CHEBI:36141
annotated source: quinone resistance phenotype
annotated property: database_cross_reference

Axiom
annotated target: An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds.
database_cross_reference: CHEBI:36141
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: quinone resistance phenotype

altered cellular component phenotype
type: Class
subclass of: cellular component phenotype
creation date: 2016-06-20T16:01:53Z
definition: A cellular component phenotype where a quality of a cellular component is altered relative to a designated control.
id: OMP:0007357
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cellular component phenotype where a quality of a cellular component is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cellular component phenotype

nucleoside resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-06-20T16:23:54Z
definition: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.
id: OMP:0007358
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: azidothymidine resistance phenotype
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: puromycin resistance phenotype
has_narrow_synonym: tunicamycin resistance phenotype
has_narrow_synonym: zidovudine resistance phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.
database_cross_reference: CHEBI:33838
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nucleoside resistance phenotype

Axiom
database_cross_reference: CHEBI:29699
annotated target: tunicamycin resistance phenotype
annotated source: nucleoside resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:10110
annotated target: azidothymidine resistance phenotype
annotated source: nucleoside resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:17939
annotated target: puromycin resistance phenotype
annotated source: nucleoside resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:10110
annotated target: zidovudine resistance phenotype
annotated source: nucleoside resistance phenotype
annotated property: has_narrow_synonym

resistant to a nucleoside
type: Class
subclass of: nucleoside resistance phenotype
creation date: 2016-06-20T16:27:19Z
definition: A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside.
id: OMP:0007359
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to a nucleoside

not resistant to a nucleoside
type: Class
subclass of: nucleoside resistance phenotype
creation date: 2016-06-20T16:27:19Z
definition: A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside.
id: OMP:0007360
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to a nucleoside

altered resistance to a nucleoside
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: nucleoside resistance phenotype
creation date: 2016-06-20T16:27:19Z
definition: A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control.
id: OMP:0007361
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to a nucleoside

Increased resistance to a nucleoside
type: Class
subclass of: altered resistance to a nucleoside
creation date: 2016-06-20T16:40:21Z
definition: An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control.
id: OMP:0007362
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: Increased resistance to a nucleoside

decreased resistance to a nucleoside
type: Class
subclass of: altered resistance to a nucleoside
creation date: 2016-06-20T16:40:21Z
definition: An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control.
id: OMP:0007363
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to a nucleoside

abolished resistance to a nucleoside
type: Class
subclass of: not resistant to a nucleoside
subclass of: decreased resistance to a nucleoside
creation date: 2016-06-20T16:40:21Z
definition: An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished.
id: OMP:0007364
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to a nucleoside

acridine antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-06-21T01:11:35Z
definition: An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom.
id: OMP:0007365
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: acridine orange
has_narrow_synonym: acriflavine resistance phenotype
has_narrow_synonym: acriflavinium chloride
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to resistance or sensitivity of a microbe to an antimicrobial agent that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom.
database_cross_reference: CHEBI:36420
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: acridine antimicrobial agent resistance phenotype

Axiom
database_cross_reference: CHEBI:74728
annotated target: acriflavinium chloride
annotated source: acridine antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:51739
annotated target: acridine orange
annotated source: acridine antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

resistant to an acridine
type: Class
subclass of: acridine antimicrobial agent resistance phenotype
creation date: 2016-06-21T01:17:16Z
definition: An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine.
id: OMP:0007366
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to an acridine

not resistant to an acridine
type: Class
subclass of: acridine antimicrobial agent resistance phenotype
creation date: 2016-06-21T01:17:16Z
definition: An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine.
id: OMP:0007367
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to an acridine

altered resistance to an acridine
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: acridine antimicrobial agent resistance phenotype
creation date: 2016-06-21T01:17:16Z
definition: An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control.
id: OMP:0007368
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to an acridine

increased resistance to an acridine
type: Class
subclass of: altered resistance to an acridine
creation date: 2016-06-21T01:17:16Z
definition: An altered resistance to an acridine phenotype where resistance is increased relative to a designated control.
id: OMP:0007369
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to an acridine phenotype where resistance is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to an acridine

decreased resistance to an acridine
type: Class
subclass of: altered resistance to an acridine
creation date: 2016-06-21T01:17:16Z
definition: An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control.
id: OMP:0007370
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to an acridine

abolished resistance to an acridine
type: Class
subclass of: not resistant to an acridine
subclass of: decreased resistance to an acridine
creation date: 2016-06-21T01:17:16Z
definition: A decreased resistance to an acridine phenotype where resistance abolished.
id: OMP:0007371
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to an acridine phenotype where resistance abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to an acridine

alkylating agent resistance phenotype
type: Class
subclass of: chemical resistance phenotype
creation date: 2016-06-22T16:41:33Z
definition: A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning.
has_narrow_synonym: Hydroxyurea
has_narrow_synonym: MMS
id: OMP:0007372
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: alkylating agent sensitivity phenotype
created by: dsiegele
has_narrow_synonym: methyl methanesulfonate
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:25255
annotated target: MMS
annotated source: alkylating agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: A chemical resistance phenotype relating to resistance or sensitivity of a microbe to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning.
database_cross_reference: CHEBI:22333
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: alkylating agent resistance phenotype

Axiom
database_cross_reference: CHEBI:44423
annotated target: Hydroxyurea
annotated source: alkylating agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:25255
annotated target: methyl methanesulfonate
annotated source: alkylating agent resistance phenotype
annotated property: has_narrow_synonym

resistant to alkylating agent
type: Class
subclass of: alkylating agent resistance phenotype
creation date: 2016-06-23T15:27:23Z
definition: An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent.
id: OMP:0007373
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An alkylating agent resistance phenotype where growth and reproduction of a microbe is resistant to an alkylating agent.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistant to alkylating agent

not resistant to alkylating agent
type: Class
subclass of: alkylating agent resistance phenotype
creation date: 2016-06-23T15:27:23Z
definition: An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent.
id: OMP:0007374
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An alkylating agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of an alkylating agent.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to alkylating agent

altered resistance to an alkylating agent
type: Class
subclass of: altered resistance to chemical
subclass of: alkylating agent resistance phenotype
creation date: 2016-06-23T15:27:23Z
definition: An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control.
id: OMP:0007375
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An alkylating agent resistance phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to an alkylating agent

increased resistance to alkylating agent
type: Class
subclass of: altered resistance to an alkylating agent
creation date: 2016-06-23T15:27:23Z
definition: An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control.
id: OMP:0007376
has_exact_synonym: decreased sensitivity to an alkylating agent
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to alkylating agent

decreased resistance to alkylating agent
type: Class
subclass of: altered resistance to an alkylating agent
creation date: 2016-06-23T15:27:23Z
definition: An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control.
id: OMP:0007377
created by: dsiegele
has_exact_synonym: increased sensitivity to an alkylating agent
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to alkylating agent

abolished resistance to alkylating agent
type: Class
subclass of: not resistant to alkylating agent
subclass of: decreased resistance to alkylating agent
creation date: 2016-06-23T15:27:23Z
definition: An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished.
id: OMP:0007378
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An decreased resistance to an alkylating agent phenotype where growth and reproduction of a microbe in the presence of an alkylating agent is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to alkylating agent

pyrimidine requirement
type: Class
subclass of: requires growth factor(s)
creation date: 2016-06-23T15:57:42Z
definition: A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base.
id: OMP:0007379
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: uracil requirement

Axiom
database_cross_reference: CHEBI:17568
annotated target: uracil requirement
annotated source: pyrimidine requirement
annotated property: has_narrow_synonym

Axiom
annotated target: A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: pyrimidine requirement

benzamides resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-06-26T14:45:16Z
definition: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent.
id: OMP:0007380
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: benzamide resistance phenotype
has_exact_synonym: benzamides sensitivity phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:28179
annotated target: benzamide resistance phenotype
annotated source: benzamides resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent.
database_cross_reference: CHEBI:22702
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: benzamides resistance phenotype

Axiom
database_cross_reference: CHEBI:22702
annotated target: benzamides sensitivity phenotype
annotated source: benzamides resistance phenotype
annotated property: has_exact_synonym

resistant to benzamides
type: Class
subclass of: benzamides resistance phenotype
creation date: 2016-06-26T14:45:16Z
definition: A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide.
id: OMP:0007381
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to benzamides

not resistant to benzamides
type: Class
subclass of: benzamides resistance phenotype
creation date: 2016-06-26T14:45:16Z
definition: A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide.
id: OMP:0007382
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to benzamides

altered resistance to benzamides
type: Class
subclass of: benzamides resistance phenotype
creation date: 2016-06-26T14:45:16Z
definition: A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control.
id: OMP:0007383
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to benzamides

increased resistance to a benzamide
type: Class
subclass of: altered resistance to benzamides
creation date: 2016-06-26T14:45:16Z
definition: An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control.
id: OMP:0007384
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to a benzamide

decreased resistance benzamides
type: Class
subclass of: altered resistance to benzamides
creation date: 2016-06-26T14:45:16Z
definition: An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control.
id: OMP:0007385
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance benzamides

abolished resistance to benzamides
type: Class
subclass of: decreased resistance benzamides
creation date: 2016-06-26T14:45:16Z
definition: A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished.
id: OMP:0007386
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to benzamides

altered pyrimidine requirement
type: Class
subclass of: altered growth factor requirement
subclass of: pyrimidine requirement
creation date: 2016-06-29T15:45:39Z
definition: An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control.
id: OMP:0007387
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered pyrimidine requirement

increased pyrimidine requirement
type: Class
subclass of: increased growth factor requirement
subclass of: altered pyrimidine requirement
creation date: 2016-06-29T15:47:23Z
definition: An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
id: OMP:0007388
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased pyrimidine requirement

decreased pyrimidine requirement
type: Class
subclass of: decreased growth factor requirement
subclass of: altered pyrimidine requirement
creation date: 2016-06-29T15:47:23Z
definition: An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
id: OMP:0007389
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased pyrimidine requirement

abolished pyrimidine requirement
type: Class
subclass of: decreased pyrimidine requirement
creation date: 2016-06-29T15:47:23Z
definition: A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished.
id: OMP:0007390
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished pyrimidine requirement

abolished cell viability
type: Class
subclass of: decreased cell viability
creation date: 2016-06-29T19:15:29Z
definition: A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions.
id: OMP:0007391
has_related_synonym: inviable
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: APO:0000112
annotated target: inviable
annotated source: abolished cell viability
annotated property: has_related_synonym

Axiom
annotated target: A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished cell viability

presence of microbial cell viability
type: Class
subclass of: microbial cell viability phenotype
creation date: 2016-07-01T22:15:10Z
definition: A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions.
id: OMP:0007392
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell viability phenotype where a microbial cell is able to survive and go on to grow and reproduce under the specified conditions.
database_cross_reference: FYPO:0000124
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of microbial cell viability

absence of microbial cell viability
type: Class
subclass of: microbial cell viability phenotype
creation date: 2016-07-01T22:15:10Z
definition: A cell viability phenotype where a microbial cell is not viable under the specified conditions.
id: OMP:0007393
has_related_synonym: inviable
has_narrow_synonym: inviable cell
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0000049
annotated target: inviable cell
annotated source: absence of microbial cell viability
annotated property: has_narrow_synonym

Axiom
annotated target: A cell viability phenotype where a microbial cell is not viable under the specified conditions.
database_cross_reference: FYPO:0000049
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of microbial cell viability

Axiom
database_cross_reference: APO:0000112
annotated target: inviable
annotated source: absence of microbial cell viability
annotated property: has_related_synonym

lethality phenotype
type: Class
subclass of: microbe-host interaction phenotype
creation date: 2016-07-06T13:10:19Z
definition: A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host.
id: OMP:0007394
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: lethality phenotype

presence of lethality
type: Class
subclass of: lethality phenotype
creation date: 2016-07-06T13:12:26Z
definition: A lethality phenotype where infection by a microbe can cause death of the host.
id: OMP:0007395
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A lethality phenotype where infection by a microbe can cause death of the host.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of lethality

absence of lethality
type: Class
subclass of: lethality phenotype
creation date: 2016-07-06T13:12:26Z
definition: A lethality phenotype where infection by a microbe does not cause death of the host.
id: OMP:0007396
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A lethality phenotype where infection by a microbe does not cause death of the host.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of lethality

altered lethality
type: Class
subclass of: lethality phenotype
subclass of: altered microbe-host interaction
creation date: 2016-07-06T13:12:26Z
definition: A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control.
id: OMP:0007397
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered lethality

decreased lethality
type: Class
subclass of: altered lethality
creation date: 2016-07-06T13:12:26Z
definition: An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control.
id: OMP:0007398
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased lethality

abolished lethality
type: Class
subclass of: absence of lethality
subclass of: decreased lethality
creation date: 2016-07-06T13:12:26Z
definition: A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished.
id: OMP:0007399
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished lethality

increased lethality
type: Class
subclass of: altered lethality
creation date: 2016-07-06T13:12:26Z
definition: An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control.
id: OMP:0007400
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased lethality

ascospore formation phenotype
type: Class
subclass of: sexual sporulation phenotype
creation date: 2016-07-06T14:29:13Z
definition: A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
id: OMP:0007401
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
database_cross_reference: GO:0030437
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: ascospore formation phenotype

presence of ascospore formation
type: Class
subclass of: ascospore formation phenotype
creation date: 2016-07-06T14:32:46Z
database_cross_reference: APO:0000041
definition: An ascospore formation phenotype where a microbe has the ability to form ascospores.
database_cross_reference: FYPO:0000590
id: OMP:0007402
has_obo_namespace: microbial_phenotype
created by: siegele

normal sporulation
type: Axiom
annotated target: FYPO:0000590
annotated source: presence of ascospore formation
annotated property: database_cross_reference

sporulation
type: Axiom
annotated target: APO:0000041
annotated source: presence of ascospore formation
annotated property: database_cross_reference

Axiom
annotated target: An ascospore formation phenotype where a microbe has the ability to form ascospores.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of ascospore formation

altered microbe-host interaction
type: Class
subclass of: microbe-host interaction phenotype
subclass of: altered microbial phenotype
creation date: 2016-07-09T13:22:30Z
definition: A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control.
id: OMP:0007403
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered microbe-host interaction

abolished resistance to killing by host
type: Class
subclass of: absence of resistance to killing by host
subclass of: decreased resistance to killing by host
creation date: 2016-07-09T13:24:32Z
definition: A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished.
id: OMP:0007404
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to killing by host

sexual sporulation phenotype
type: Class
subclass of: sporulation phenotype
subclass of: sexual reproduction phenotype
creation date: 2016-07-09T14:14:51Z
definition: A sporulation phenotype related to the formation of spores derived from the products of meiosis.
database_cross_reference: GO:0034293
id: OMP:0007405
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A sporulation phenotype related to the formation of spores derived from the products of meiosis.
database_cross_reference: GO:0034293
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: sexual sporulation phenotype

sexual sporulation
type: Axiom
annotated target: GO:0034293
annotated source: sexual sporulation phenotype
annotated property: database_cross_reference

sexual reproduction phenotype
type: Class
subclass of: population growth phenotype
creation date: 2016-07-09T14:24:56Z
definition: A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
database_cross_reference: GO:0019953
id: OMP:0007406
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
database_cross_reference: GO:0019953
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: sexual reproduction phenotype

absence of ascospore formation
type: Class
subclass of: ascospore formation phenotype
creation date: 2016-07-09T14:47:12Z
definition: An ascospore formation phenotype where a microbe lacks the ability to form ascospores.
id: OMP:0007407
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An ascospore formation phenotype where a microbe lacks the ability to form ascospores.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of ascospore formation

altered ascospore formation
type: Class
subclass of: ascospore formation phenotype
subclass of: altered sexual sporulation
creation date: 2016-07-09T14:51:28Z
definition: An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control.
id: OMP:0007408
has_related_synonym: abnormal sporulation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0000121
annotated target: abnormal sporulation
annotated source: altered ascospore formation
annotated property: has_related_synonym

Axiom
annotated target: An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered ascospore formation

akinete morphology phenotype
type: Class
subclass of: spore morphology phenotype
creation date: 2016-07-13T18:36:45Z
definition: A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria.
id: OMP:0007409
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Akinetes are typically more resistant to dessication and other environmental stresses than vegetative cells.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:11948167
database_cross_reference: doi:10.1046/j.1469-8137.1999.00505.x
annotated property: definition
annotated source: akinete morphology phenotype

altered akinete morphology
type: Class
subclass of: akinete morphology phenotype
subclass of: altered spore morphology
creation date: 2016-07-13T18:43:01Z
definition: An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control.
id: OMP:0007410
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered akinete morphology

altered spore morphology
type: Class
subclass of: altered cell morphology
subclass of: spore morphology phenotype
creation date: 2016-07-13T18:45:02Z
definition: A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control.
id: OMP:0007411
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered spore morphology

mating phenotype
type: Class
subclass of: sexual reproduction phenotype
creation date: 2016-07-14T16:21:02Z
definition: A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types.
database_cross_reference: FYPO:0000301
id: OMP:0007412
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation with cellular fusion is found in Saccharomyces cerevisiae.
created by: dsiegele
has_exact_synonym: mating response
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: APO:0000032
annotated target: mating response
annotated source: mating phenotype
annotated property: has_exact_synonym

Axiom
annotated target: A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types.
database_cross_reference: GO:0000747
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: mating phenotype

mating phenotype
type: Axiom
annotated target: FYPO:0000301
annotated source: mating phenotype
annotated property: database_cross_reference

conjugation phenotype
type: Class
subclass of: multi-organism process phenotype
creation date: 2016-07-14T16:25:26Z
definition: A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms.
database_cross_reference: GO:0000746
id: OMP:0007413
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. An example of conjugation would be the transfer of a conjugative plasmid from a donor bacterium to a recipient bacterium.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms.
database_cross_reference: GO:0000746
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: conjugation phenotype

conjugation
type: Axiom
annotated target: GO:0000746
annotated source: conjugation phenotype
annotated property: database_cross_reference

absence of conjugation
type: Class
subclass of: conjugation phenotype
creation date: 2016-07-14T16:32:10Z
definition: A conjugation phenotype where mating does not occur through the process of conjugation.
id: OMP:0007414
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A conjugation phenotype where mating does not occur through the process of conjugation.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of conjugation

presence of conjugation
type: Class
subclass of: conjugation phenotype
creation date: 2016-07-14T16:32:10Z
definition: A conjugation phenotype where mating occurs through the process of conjugation.
id: OMP:0007415
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A conjugation phenotype where mating occurs through the process of conjugation.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of conjugation

altered conjugation
type: Class
subclass of: conjugation phenotype
creation date: 2016-07-14T16:32:10Z
definition: A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control.
id: OMP:0007416
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered conjugation

decreased conjugation
type: Class
subclass of: altered conjugation
creation date: 2016-07-14T16:36:35Z
definition: An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control.
id: OMP:0007417
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased conjugation

increased conjugation
type: Class
subclass of: altered conjugation
creation date: 2016-07-14T16:36:35Z
definition: An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control.
id: OMP:0007418
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased conjugation

abolished conjugation
type: Class
subclass of: decreased conjugation
creation date: 2016-07-14T16:36:35Z
definition: A decreased conjugation phenotype where conjugation is abolished.
id: OMP:0007419
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased conjugation phenotype where conjugation is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished conjugation

increased akinete formation
type: Class
subclass of: altered akinete formation
creation date: 2016-07-16T16:44:37Z
definition: An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control.
id: OMP:0007420
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased akinete formation

decreased akinete formation
type: Class
subclass of: altered akinete formation
creation date: 2016-07-16T16:44:37Z
definition: An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control.
id: OMP:0007421
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased akinete formation

abolished akinete formation
type: Class
subclass of: absence of akinete formation
subclass of: decreased akinete formation
creation date: 2016-07-16T16:44:37Z
definition: A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished.
id: OMP:0007422
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished akinete formation

decreased budding frequency
type: Class
subclass of: decreased budding
creation date: 2016-07-16T16:56:11Z
definition: A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control.
id: OMP:0007423
has_related_synonym: budding index
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control.
database_cross_reference: APO:0000089
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased budding frequency

increased budding frequency
type: Class
subclass of: increased budding
creation date: 2016-07-16T16:58:06Z
definition: An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control.
id: OMP:0007424
has_related_synonym: budding index
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: APO:0000089
annotated target: An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased budding frequency

absence of schizogeny
type: Class
subclass of: schizogeny phenotype
subclass of: absence of multiple fission
creation date: 2016-07-16T17:12:16Z
definition: A schizogeny phenotype where an organism does not reproduce by the process of schizogeny.
id: OMP:0007425
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A schizogeny phenotype where an organism does not reproduce by the process of schizogeny.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of schizogeny

increased schizogeny
type: Class
subclass of: altered schizogeny
creation date: 2016-07-16T17:14:28Z
definition: An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control.
id: OMP:0007426
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased schizogeny

decreased schizogeny
type: Class
subclass of: altered schizogeny
creation date: 2016-07-16T17:14:28Z
definition: An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control.
id: OMP:0007427
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased schizogeny

abolished schizogeny
type: Class
subclass of: absence of schizogeny
subclass of: decreased schizogeny
creation date: 2016-07-16T17:14:28Z
definition: A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished.
id: OMP:0007428
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished schizogeny

increased asexual spore formation
type: Class
subclass of: altered asexual sporulation
creation date: 2016-07-19T15:37:25Z
definition: An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control.
id: OMP:0007429
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased asexual spore formation

decreased asexual spore formation
type: Class
subclass of: altered asexual sporulation
creation date: 2016-07-19T15:37:25Z
definition: An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control.
id: OMP:0007430
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased asexual spore formation

abolished asexual spore formation
type: Class
subclass of: decreased asexual spore formation
creation date: 2016-07-19T15:37:25Z
definition: A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished.
id: OMP:0007431
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished asexual spore formation

altered number of flagella
type: Class
subclass of: altered flagellum
creation date: 2016-07-20T15:45:00Z
definition: An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control.
id: OMP:0007432
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered number of flagella

presence of sexual sporulation
type: Class
subclass of: sexual sporulation phenotype
subclass of: presence of sexual reproduction
creation date: 2016-07-27T19:29:30Z
definition: A sexual sporulation phenotype where an organism is able to produce sexual spores.
id: OMP:0007433
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sexual sporulation phenotype where an organism is able to produce sexual spores.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of sexual sporulation

absence of sexual sporulation
type: Class
subclass of: sexual sporulation phenotype
subclass of: absence of sexual reproduction
creation date: 2016-07-27T19:29:30Z
definition: A sexual sporulation phenotype where an organism is not able to produce sexual spores.
id: OMP:0007434
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sexual sporulation phenotype where an organism is not able to produce sexual spores.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of sexual sporulation

altered sexual sporulation
type: Class
subclass of: sexual sporulation phenotype
subclass of: altered sexual reproduction
creation date: 2016-07-27T19:29:30Z
definition: A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control.
id: OMP:0007435
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered sexual sporulation

increased sexual sporulation
type: Class
subclass of: altered sexual sporulation
creation date: 2016-07-27T19:29:30Z
definition: An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control.
id: OMP:0007436
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased sexual sporulation

decreased sexual sporulation
type: Class
subclass of: altered sexual sporulation
creation date: 2016-07-27T19:29:30Z
definition: An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control.
id: OMP:0007437
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased sexual sporulation

abolished sexual sporulation
type: Class
subclass of: absence of sexual sporulation
subclass of: decreased sexual sporulation
creation date: 2016-07-27T19:29:30Z
definition: A decreased sexual sporulation phenotype where the formation of sexual spores is abolished.
id: OMP:0007438
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased sexual sporulation phenotype where the formation of sexual spores is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished sexual sporulation

presence of sexual reproduction
type: Class
subclass of: sexual reproduction phenotype
creation date: 2016-07-27T19:32:00Z
definition: A sexual reproduction phenotype where an organism is able to reproduce sexually.
id: OMP:0007439
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sexual reproduction phenotype where an organism is able to reproduce sexually.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of sexual reproduction

absence of sexual reproduction
type: Class
subclass of: sexual reproduction phenotype
creation date: 2016-07-27T19:32:00Z
definition: A sexual reproduction phenotype where an organism is not able to reproduce sexually.
id: OMP:0007440
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sexual reproduction phenotype where an organism is not able to reproduce sexually.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of sexual reproduction

altered sexual reproduction
type: Class
subclass of: sexual reproduction phenotype
creation date: 2016-07-27T19:32:00Z
definition: A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control.
id: OMP:0007441
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered sexual reproduction

presence of lethality in mice
type: Class
subclass of: presence of lethality
creation date: 2016-07-27T22:27:42Z
definition: A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus).
id: OMP:0007442
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of lethality in mice

presence of lethality in immunocompromised mice
type: Class
subclass of: presence of lethality
creation date: 2016-07-27T22:27:43Z
definition: A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus).
id: OMP:0007443
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of lethality in immunocompromised mice

absence of lethality in mice
type: Class
subclass of: absence of lethality
creation date: 2016-07-27T22:28:22Z
definition: An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus).
id: OMP:0007444
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of lethality in mice

absence of lethality in immunocompromised mice
type: Class
subclass of: absence of lethality
creation date: 2016-07-27T22:28:22Z
definition: An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus).
id: OMP:0007445
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of lethality in immunocompromised mice

decreased lethality in mice
type: Class
subclass of: decreased lethality
creation date: 2016-07-27T22:29:04Z
definition: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
id: OMP:0007446
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased lethality in mice

decreased lethality in immunocompromised mice
type: Class
subclass of: decreased lethality
creation date: 2016-07-27T22:31:31Z
definition: A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control.
id: OMP:0007447
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased lethality in immunocompromised mice

abolished lethality in mice
type: Class
subclass of: abolished lethality
subclass of: decreased lethality in mice
creation date: 2016-07-27T22:33:19Z
definition: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished.
id: OMP:0007448
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished lethality in mice

abolished lethality in immunocompromised mice
type: Class
subclass of: abolished lethality
subclass of: decreased lethality in immunocompromised mice
creation date: 2016-07-27T22:33:19Z
definition: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished.
id: OMP:0007449
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished lethality in immunocompromised mice

increased lethality in mice
type: Class
subclass of: increased lethality
creation date: 2016-07-27T22:40:08Z
definition: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
id: OMP:0007450
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased lethality in mice

increased lethality in immunocompromised mice
type: Class
subclass of: increased lethality
creation date: 2016-07-27T22:40:08Z
definition: A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control.
id: OMP:0007451
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased lethality in immunocompromised mice

presence of survival in macrophage
type: Class
subclass of: survival in macrophage phenotype
creation date: 2016-08-08T14:58:53Z
definition: A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages.
id: OMP:0007452
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of survival in macrophage

absence of survival in macrophage
type: Class
subclass of: survival in macrophage phenotype
creation date: 2016-08-08T15:15:44Z
id: OMP:0007453
created by: dsiegele
has_obo_namespace: microbial_phenotype

altered survival in macrophage
type: Class
subclass of: altered microbe-host interaction
subclass of: survival in macrophage phenotype
creation date: 2016-08-08T15:16:09Z
id: OMP:0007454
created by: dsiegele
has_obo_namespace: microbial_phenotype

survival in macrophage phenotype
type: Class
subclass of: microbe-host interaction phenotype
creation date: 2016-08-08T15:17:42Z
id: OMP:0007455
created by: dsiegele
has_obo_namespace: microbial_phenotype

population viability phenotype
type: Class
subclass of: population phenotype
creation date: 2016-08-10T14:51:48Z
definition: A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce.
id: OMP:0007456
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive or grow and reproduce.
database_cross_reference: FYPO:0002057
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: population viability phenotype

viable cell population
type: Class
subclass of: cell population viability phenotype
creation date: 2016-08-10T14:56:12Z
definition: A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions.
database_cross_reference: FYPO:0002058
id: OMP:0007457
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: viable cell population

viable cell population
type: Axiom
annotated target: FYPO:0002058
annotated source: viable cell population
annotated property: database_cross_reference

nonviable cell population
type: Class
subclass of: population viability phenotype
creation date: 2016-08-10T14:56:12Z
definition: A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions.
database_cross_reference: FYPO:0002059
id: OMP:0007458
created by: dsiegele
has_exact_synonym: inviable cell population
has_obo_namespace: microbial_phenotype

inviable cell population
type: Axiom
annotated target: FYPO:0002059
annotated source: nonviable cell population
annotated property: database_cross_reference

Axiom
annotated target: A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions.
database_cross_reference: FYPO:0002059
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nonviable cell population

altered cell population viability
type: Class
subclass of: altered cell population phenotype
subclass of: cell population viability phenotype
creation date: 2016-08-10T14:56:12Z
definition: A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control.
id: OMP:0007459
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell population viability phenotype where the proportion of cells that remain viable under the specified conditions is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell population viability

viable vegetative cell population
type: Class
subclass of: viable cell population
creation date: 2016-08-10T15:00:12Z
definition: A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0002060
id: OMP:0007460
created by: dsiegele
has_obo_namespace: microbial_phenotype

viable vegetative cell population
type: Axiom
annotated target: FYPO:0002060
annotated source: viable vegetative cell population
annotated property: database_cross_reference

Axiom
annotated target: A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0002060
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: viable vegetative cell population

nonviable vegetative cell population
type: Class
subclass of: nonviable cell population
creation date: 2016-08-10T15:16:25Z
definition: A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0002061
id: OMP:0007461
created by: dsiegele
has_related_synonym: inviable vegetative cell population
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0002061
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: nonviable vegetative cell population

inviable vegetative cell population
type: Axiom
annotated target: FYPO:0002061
annotated source: nonviable vegetative cell population
annotated property: database_cross_reference

colonization of invertebrate host phenotype
type: Class
subclass of: colonization of a host phenotype
creation date: 2016-09-04T21:42:45Z
definition: A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host.
id: OMP:0007462
has_narrow_synonym: colonization of silkworm (Bombyx mori)
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: colonization of invertebrate host phenotype

Axiom
database_cross_reference: TaxonomyID:7091
annotated target: colonization of silkworm (Bombyx mori)
annotated source: colonization of invertebrate host phenotype
annotated property: has_narrow_synonym

presence of flocculation
type: Class
subclass of: flocculation phenotype
creation date: 2016-09-12T14:35:40Z
definition: A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells.
database_cross_reference: APO:0000065
id: OMP:0007463
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of flocculation

flocculation
type: Axiom
annotated target: APO:0000065
annotated source: presence of flocculation
annotated property: database_cross_reference

absence of flocculation
type: Class
subclass of: flocculation phenotype
creation date: 2016-09-12T14:35:40Z
definition: A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells.
id: OMP:0007464
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of flocculation

altered flocculation
type: Class
subclass of: flocculation phenotype
subclass of: altered liquid culture morphology
creation date: 2016-09-12T14:35:40Z
definition: A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control.
id: OMP:0007465
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered flocculation

increased flocculation
type: Class
subclass of: altered flocculation
creation date: 2016-09-12T14:35:40Z
definition: An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control.
id: OMP:0007466
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased flocculation

decreased flocculation
type: Class
subclass of: altered flocculation
creation date: 2016-09-12T14:35:40Z
definition: An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control.
id: OMP:0007467
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased flocculation

abolished flocculation
type: Class
subclass of: absence of flocculation
subclass of: decreased flocculation
creation date: 2016-09-12T14:35:40Z
definition: A decreased flocculation phenotype where flocculation is abolished.
id: OMP:0007468
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased flocculation phenotype where flocculation is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished flocculation

altered liquid culture morphology
type: Class
subclass of: liquid culture morphology phenotype
subclass of: altered population morphology
creation date: 2016-09-12T15:14:45Z
definition: A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control.
id: OMP:0007469
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered liquid culture morphology

altered population morphology
type: Class
subclass of: population morphology phenotype
subclass of: altered population phenotype
creation date: 2016-09-12T15:16:19Z
definition: A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control.
id: OMP:0007470
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered population morphology

increased ascospore formation
type: Class
subclass of: altered ascospore formation
subclass of: increased sexual sporulation
creation date: 2016-09-13T14:35:10Z
definition: An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control.
id: OMP:0007471
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased ascospore formation

decreased ascospore formation
type: Class
subclass of: altered ascospore formation
subclass of: decreased sexual sporulation
creation date: 2016-09-13T14:35:10Z
definition: An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control.
id: OMP:0007472
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased ascospore formation

abolished ascospore formation
type: Class
subclass of: absence of ascospore formation
subclass of: decreased ascospore formation
creation date: 2016-09-13T14:35:10Z
definition: An altered ascospore formation phenotype where the formation of ascospores is abolished.
database_cross_reference: FYPO:0000583
id: OMP:0007473
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered ascospore formation phenotype where the formation of ascospores is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished ascospore formation

abolished sporulation
type: Axiom
annotated target: FYPO:0000583
annotated source: abolished ascospore formation
annotated property: database_cross_reference

phenolic antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-09-19T16:00:17Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
id: OMP:0007474
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_narrow_synonym: gilvusmycin antimicrobial agent resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: phenol antimicrobial agent resistance phenotype
has_exact_synonym: phenols antimicrobial agent sensitivity phenotype
has_narrow_synonym: triclosan antimicrobial agent resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:65964
annotated target: gilvusmycin antimicrobial agent resistance phenotype
annotated source: phenolic antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:15882
annotated target: phenol antimicrobial agent resistance phenotype
annotated source: phenolic antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:164200
annotated target: triclosan antimicrobial agent resistance phenotype
annotated source: phenolic antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:33853
annotated target: phenols antimicrobial agent sensitivity phenotype
annotated source: phenolic antimicrobial agent resistance phenotype
annotated property: has_exact_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial agent that belongs to the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
database_cross_reference: CHEBI:33853
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: phenolic antimicrobial agent resistance phenotype

resistant to phenols
type: Class
subclass of: phenolic antimicrobial agent resistance phenotype
creation date: 2016-09-19T16:49:20Z
definition: A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols.
id: OMP:0007475
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: resistant to phenols

not resistant to phenols
type: Class
subclass of: phenolic antimicrobial agent resistance phenotype
creation date: 2016-09-19T16:49:20Z
definition: A phenols resistance phenotype where an organism or cell is sensitive to phenols.
id: OMP:0007476
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phenols resistance phenotype where an organism or cell is sensitive to phenols.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: not resistant to phenols

altered resistance to phenols
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: phenolic antimicrobial agent resistance phenotype
creation date: 2016-09-19T16:49:20Z
definition: A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control.
id: OMP:0007477
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered resistance to phenols

increased resistance to phenols
type: Class
subclass of: altered resistance to phenols
creation date: 2016-09-19T16:49:20Z
definition: An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control.
id: OMP:0007478
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased resistance to phenols

decreased resistance to phenols
type: Class
subclass of: altered resistance to phenols
creation date: 2016-09-19T16:49:20Z
definition: An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control.
id: OMP:0007479
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased resistance to phenols

abolished resistance to phenols
type: Class
subclass of: not resistant to phenols
subclass of: decreased resistance to phenols
creation date: 2016-09-19T16:49:20Z
definition: A decreased resistance to phenols phenotype where resistance to phenols is abolished.
id: OMP:0007480
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to phenols phenotype where resistance to phenols is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished resistance to phenols

quaternary ammonium salts antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-09-19T17:10:16Z
definition: An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups.
id: OMP:0007481
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: benzalkonium chloride resistance phenotype
created by: dsiegele
has_narrow_synonym: methyl green resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: quaternium-15 resistance phenotype
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:59607
annotated target: quaternium-15 resistance phenotype
annotated source: quaternary ammonium salts antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:3020
annotated target: benzalkonium chloride resistance phenotype
annotated source: quaternary ammonium salts antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. Quaternary ammonium salts are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups.
database_cross_reference: CHEBI:35273
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: quaternary ammonium salts antimicrobial agent resistance phenotype

Axiom
database_cross_reference: CHEBI:CHEBI:87649
annotated target: methyl green resistance phenotype
annotated source: quaternary ammonium salts antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

resistant to quaternary ammonium salt antimicrobial agent
type: Class
subclass of: quaternary ammonium salts antimicrobial agent resistance phenotype
creation date: 2016-09-19T17:10:16Z
definition: A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts.
id: OMP:0007482
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: resistant to quaternary ammonium salt antimicrobial agent

not resistant to quaternary ammonium salt antimicrobial agent
type: Class
subclass of: quaternary ammonium salts antimicrobial agent resistance phenotype
creation date: 2016-09-19T17:10:16Z
definition: A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts.
id: OMP:0007483
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: not resistant to quaternary ammonium salt antimicrobial agent

altered resistance to quaternary ammonium salt antimicrobial agent
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: quaternary ammonium salts antimicrobial agent resistance phenotype
creation date: 2016-09-19T17:10:16Z
definition: A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control.
id: OMP:0007484
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered resistance to quaternary ammonium salt antimicrobial agent

increased resistance to quaternary ammonium salt antimicrobial agent
type: Class
subclass of: altered resistance to quaternary ammonium salt antimicrobial agent
creation date: 2016-09-19T17:10:16Z
definition: An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control.
id: OMP:0007485
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased resistance to quaternary ammonium salt antimicrobial agent

decreased resistance to quaternary ammonium salt antimicrobial agent
type: Class
subclass of: altered resistance to quaternary ammonium salt antimicrobial agent
creation date: 2016-09-19T17:10:16Z
definition: An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control.
id: OMP:0007486
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased resistance to quaternary ammonium salt antimicrobial agent

abolished resistance to quaternary ammonium salt antimicrobial agent
type: Class
subclass of: not resistant to quaternary ammonium salt antimicrobial agent
subclass of: decreased resistance to quaternary ammonium salt antimicrobial agent
creation date: 2016-09-19T17:10:16Z
definition: A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished.
id: OMP:0007487
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished resistance to quaternary ammonium salt antimicrobial agent

absence of motility by gliding
type: Class
subclass of: absence of motility
creation date: 2016-09-24T23:00:10Z
definition: An absence of motility phenotype where a microbe is not capable of gliding motility.
id: OMP:0007488
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of motility phenotype where a microbe is not capable of gliding motility.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of motility by gliding

absence of motility by swarming
type: Class
subclass of: absence of motility
creation date: 2016-09-24T23:00:10Z
definition: An absence of motility phenotype where a microbe is not capable of swarming motility.
id: OMP:0007489
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of motility phenotype where a microbe is not capable of swarming motility.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of motility by swarming

absence of motility by swimming
type: Class
subclass of: absence of motility
creation date: 2016-09-24T23:00:10Z
definition: An absence of motility phenotype where a microbe is not capable of swimming motility.
id: OMP:0007490
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of motility phenotype where a microbe is not capable of swimming motility.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of motility by swimming

absence of motility by twitching
type: Class
subclass of: absence of motility
creation date: 2016-09-24T23:00:10Z
definition: An absence of motility phenotype where a microbe is not capable of twitching motility.
id: OMP:0007491
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of motility phenotype where a microbe is not capable of twitching motility.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of motility by twitching

altered motility by gliding
type: Class
subclass of: altered motility
creation date: 2016-09-24T23:01:37Z
definition: A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control.
id: OMP:0007492
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered motility by gliding

altered cell motility by twitching
type: Class
subclass of: altered motility
creation date: 2016-09-24T23:01:37Z
definition: A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control.
id: OMP:0007493
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell motility by twitching

abolished motility by twitching
type: Class
subclass of: abolished motility
subclass of: decreased motility by twitching
subclass of: absence of motility by twitching
creation date: 2016-09-24T23:04:50Z
definition: A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished.
id: OMP:0007494
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished motility by twitching

epoxide resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2016-09-25T12:02:01Z
definition: An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring.
id: OMP:0007495
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: cerulenin resistance phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring.
database_cross_reference: CHEBI:32955
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: epoxide resistance phenotype

Axiom
database_cross_reference: CHEBI:171741
annotated target: cerulenin resistance phenotype
annotated source: epoxide resistance phenotype
annotated property: has_narrow_synonym

resistant to an epoxide
type: Class
subclass of: epoxide resistance phenotype
creation date: 2016-09-25T12:11:27Z
definition: An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide.
id: OMP:0007496
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: resistant to an epoxide

not resistant to an epoxide
type: Class
subclass of: epoxide resistance phenotype
creation date: 2016-09-25T12:11:27Z
definition: An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide.
id: OMP:0007497
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: not resistant to an epoxide

altered epoxide resistance
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: epoxide resistance phenotype
creation date: 2016-09-25T12:11:27Z
definition: An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control.
id: OMP:0007498
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: altered epoxide resistance

increased resistance to an epoxide
type: Class
subclass of: altered epoxide resistance
creation date: 2016-09-25T12:12:32Z
definition: An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control.
id: OMP:0007499
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: increased resistance to an epoxide

decreased resistance to an epoxide
type: Class
subclass of: altered epoxide resistance
creation date: 2016-09-25T12:12:32Z
definition: An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control.
id: OMP:0007500
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: decreased resistance to an epoxide

abolished resistance to an epoxide
type: Class
subclass of: not resistant to an epoxide
subclass of: decreased resistance to an epoxide
creation date: 2016-09-25T12:12:32Z
definition: A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished.
id: OMP:0007501
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished.
database_cross_reference: OMP:JG
annotated property: definition
annotated source: abolished resistance to an epoxide

altered capsule morphology
type: Class
subclass of: capsule phenotype
creation date: 2016-09-25T13:45:05Z
definition: A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control.
id: OMP:0007502
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered capsule morphology

altered capsule size
type: Class
subclass of: altered capsule morphology
creation date: 2016-09-25T13:47:16Z
definition: An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control.
id: OMP:0007503
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered capsule size

Increased capsule size
type: Class
subclass of: altered capsule size
creation date: 2016-09-25T13:49:19Z
definition: An altered capsule size phenotype where the size of the capsule is increased relative to a designated control.
id: OMP:0007504
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered capsule size phenotype where the size of the capsule is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: Increased capsule size

decreased capsule size
type: Class
subclass of: altered capsule size
creation date: 2016-09-25T13:49:19Z
definition: An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control.
id: OMP:0007505
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased capsule size

titan cell morphology phenotype
type: Class
subclass of: cell morphology phenotype
creation date: 2016-09-25T22:33:27Z
definition: A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
database_cross_reference: FAO:0000063
id: OMP:0007506
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
database_cross_reference: FAO:0000063
database_cross_reference: OMP:DAS
database_cross_reference: PMID:21821718
annotated property: definition
annotated source: titan cell morphology phenotype

titan cell
type: Axiom
annotated target: FAO:0000063
annotated source: titan cell morphology phenotype
annotated property: database_cross_reference

presence of titan cells
type: Class
subclass of: titan cell morphology phenotype
creation date: 2016-09-25T23:28:19Z
definition: A titan cell phenotype where a microbe is able to form titan cells.
id: OMP:0007507
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A titan cell phenotype where a microbe is able to form titan cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of titan cells

absence of titan cells
type: Class
subclass of: titan cell morphology phenotype
creation date: 2016-09-25T23:28:19Z
definition: A titan cell phenotype where a microbe cannot form titan cells.
id: OMP:0007508
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A titan cell phenotype where a microbe cannot form titan cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of titan cells

altered titan cell morphology
type: Class
subclass of: altered cell morphology
subclass of: titan cell morphology phenotype
creation date: 2016-09-25T23:28:19Z
definition: A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control.
id: OMP:0007509
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered titan cell morphology

altered titan cell formation
type: Class
subclass of: titan cell formation phenotype
creation date: 2016-09-25T23:32:51Z
definition: A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control.
id: OMP:0007510
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered titan cell formation

ascospore morphology phenotype
type: Class
subclass of: spore morphology phenotype
creation date: 2016-12-19T14:07:15Z
definition: A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete.
id: OMP:0007511
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete.
database_cross_reference: CL:0000607
database_cross_reference: FAO:0000020
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: ascospore morphology phenotype

altered ascospore morphology
type: Class
subclass of: altered spore morphology
subclass of: ascospore morphology phenotype
creation date: 2016-12-19T14:12:30Z
definition: An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control.
id: OMP:0007512
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered ascospore morphology

altered endospore morphology
type: Class
subclass of: endospore morphology phenotype
subclass of: altered spore morphology
creation date: 2016-12-19T14:16:33Z
definition: An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control.
id: OMP:0007513
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered endospore morphology

decreased negative osmotaxis
type: Class
subclass of: decreased osmotaxis
creation date: 2017-02-20T15:38:16Z
definition: A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control.
id: OMP:0007514
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased negative osmotaxis

decreased positive osmotaxis
type: Class
subclass of: decreased osmotaxis
creation date: 2017-02-20T15:38:16Z
definition: A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control.
id: OMP:0007515
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased positive osmotaxis

population growth in high osmolarity phenotype
type: Class
subclass of: solute and water activity effects on population growth phenotype
creation date: 2017-02-20T15:58:54Z
definition: A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both.
id: OMP:0007516
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth phenotype relating to the vegetative growth of a microbial population in conditions of high osmolarity, which refers to osmotic conditions where the osmolarity of the environment is higher than the osmolarity that allows for optimal population growth. Population growth may refer to growth rate, growth yield, or both.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: population growth in high osmolarity phenotype

presence of population growth in high osmolarity
type: Class
subclass of: population growth in high osmolarity phenotype
creation date: 2017-02-20T15:59:09Z
definition: A population growth phenotype where a microbial population can grow in conditions of high osmolarity.
id: OMP:0007517
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_related_synonym: normal growth during cellular response to high osmolarity

Axiom
database_cross_reference: FYPO:0001022
annotated target: normal growth during cellular response to high osmolarity
annotated source: presence of population growth in high osmolarity
annotated property: has_related_synonym

Axiom
annotated target: A population growth phenotype where a microbial population can grow in conditions of high osmolarity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of population growth in high osmolarity

absence of population growth in high osmolarity
type: Class
subclass of: population growth in high osmolarity phenotype
creation date: 2017-02-20T15:59:09Z
definition: A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity.
id: OMP:0007518
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth phenotype where a microbial population doesn't grow in conditions of high osmolarity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of population growth in high osmolarity

altered population growth in high osmolarity
type: Class
subclass of: population growth in high osmolarity phenotype
subclass of: altered population growth range
creation date: 2017-02-20T15:59:09Z
definition: A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control.
id: OMP:0007519
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth phenotype where the growth of a microbial population in conditions of high osmolarity is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered population growth in high osmolarity

increased population growth in high osmolarity
type: Class
subclass of: altered population growth in high osmolarity
creation date: 2017-02-20T16:03:09Z
definition: An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both.
id: OMP:0007520
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered population growth in high osmolarity phenotype where growth of a microbial population in conditions of high osmolarity is increased relative to a designated control. Increased growth may reflect an increased growth rate (i.e., faster growth), increased growth yield, or both.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased population growth in high osmolarity

decreased population growth in high osmolarity
type: Class
subclass of: altered population growth in high osmolarity
creation date: 2017-02-20T16:03:09Z
definition: An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both.
id: OMP:0007521
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered growth in high osmolarity phenotype where growth of a microbial population in high osmolarity is decreased relative to a designated control. Decreased growth may reflect a reduced growth rate (i.e., slower growth), reduced growth yield, or both.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased population growth in high osmolarity

abolished population growth in high osmolarity
type: Class
subclass of: absence of population growth in high osmolarity
subclass of: decreased population growth in high osmolarity
creation date: 2017-02-20T16:03:16Z
definition: A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity.
id: OMP:0007522
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased population growth in high osmolarity phenotype where growth of the microbial population is abolished in conditions of high osmolarity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished population growth in high osmolarity

altered population growth range
type: Class
subclass of: altered population growth
subclass of: effect of non-nutrient environmental factors on population growth phenotype
creation date: 2017-02-20T16:06:25Z
definition: A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control.
id: OMP:0007523
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A population growth range phenotype where the rate and/or extent of growth of a microbial population in a specified environmental condition is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered population growth range

presence of lethality in an invertebrate host
type: Class
subclass of: presence of lethality
creation date: 2017-02-20T16:43:30Z
definition: A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host.
id: OMP:0007524
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of lethality in an invertebrate host

absence of lethality in an invertebrate host
type: Class
subclass of: absence of lethality
creation date: 2017-02-20T16:46:31Z
definition: An absence of lethality phenotype where the infected host is an invertebrate.
id: OMP:0007525
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An absence of lethality phenotype where the infected host is an invertebrate.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of lethality in an invertebrate host

altered lethality in an invertebrate host
type: Class
subclass of: altered lethality
creation date: 2017-02-20T16:48:08Z
definition: An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control.
id: OMP:0007526
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered lethality in an invertebrate host

altered lethality in an amoeba host
type: Class
subclass of: altered lethality
creation date: 2017-02-20T16:49:04Z
definition: An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control.
id: OMP:0007527
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered lethality in an amoeba host

presence of lethality in an amoeba host
type: Class
subclass of: presence of lethality
creation date: 2017-02-20T16:54:13Z
definition: A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host.
id: OMP:0007528
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of lethality in an amoeba host

absence of lethality in an amoeba host
type: Class
subclass of: absence of lethality
creation date: 2017-02-20T16:55:05Z
definition: An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host.
id: OMP:0007529
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of lethality in an amoeba host

decreased lethality in an amoeba host
type: Class
subclass of: altered lethality in an amoeba host
creation date: 2017-02-20T16:57:15Z
definition: An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control.
id: OMP:0007530
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased lethality in an amoeba host

increased lethality in an amoeba host
type: Class
subclass of: altered lethality in an amoeba host
creation date: 2017-02-20T16:57:15Z
definition: An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control.
id: OMP:0007531
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased lethality in an amoeba host

abolished lethality in an amoeba host
type: Class
subclass of: absence of lethality in an amoeba host
subclass of: decreased lethality in an amoeba host
creation date: 2017-02-20T16:59:35Z
definition: A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished.
id: OMP:0007532
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished lethality in an amoeba host

urea derivative resistance phenotype
type: Class
creation date: 2017-02-24T13:14:38Z
definition: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea.
term replaced by: OMP:0007195
id: OMP:0007533
comment: The original term and its children were deemed to be too granular and were replaced with OMP:0007195 ! chemical resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific chemical in the Annotation Extension field. OMP:0007247 resistant to a chemical OMP:0007246 not resistant to a chemical OMP:0007248 altered chemical resistance OMP:0007249 decreased resistance to a chemical OMP:0007883 abolished chemical resistance OMP:0007250 increased resistance to a chemical
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea.
database_cross_reference: CHEBI:47857
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: urea derivative resistance phenotype

resistant to a urea derivative
type: Class
creation date: 2017-02-24T13:18:35Z
definition: A ureas resistance phenotype where a microbe is resistant to a derivative of urea.
term replaced by: OMP:0007247
id: OMP:0007534
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: A ureas resistance phenotype where a microbe is resistant to a derivative of urea.
database_cross_reference: CHEBI:47857
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistant to a urea derivative

not resistant to a urea derivative
type: Class
creation date: 2017-02-24T13:18:35Z
definition: A ureas resistance phenotype where a microbe is not resistant to a derivative of urea.
term replaced by: OMP:0007246
id: OMP:0007535
comment: The original term was deemed to be too granular.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: A ureas resistance phenotype where a microbe is not resistant to a derivative of urea.
database_cross_reference: CHEBI:47857
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: not resistant to a urea derivative

altered resistance to a urea derivative
type: Class
creation date: 2017-02-24T13:18:35Z
definition: A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control.
term replaced by: OMP:0007248
id: OMP:0007536
comment: The original term was deemed to be too granular and was replaced with OMP:0007248 ! altered resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control.
database_cross_reference: CHEBI:47857
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to a urea derivative

increased resistance to a urea derivative
type: Class
creation date: 2017-02-24T13:19:13Z
definition: An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control.
term replaced by: OMP:0007250
id: OMP:0007537
comment: The original term was deemed to be too granular and were replaced with OMP:0007250 ! increased resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
has_exact_synonym: decreased sensitivity to a urea derivative
has_narrow_synonym: decreased sensitivity to hydroxyurea
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to a urea derivative

Axiom
database_cross_reference: CHEBI:44423
annotated target: decreased sensitivity to hydroxyurea
annotated source: increased resistance to a urea derivative
annotated property: has_narrow_synonym

decreased resistance to a urea derivative
type: Class
creation date: 2017-02-24T13:19:13Z
definition: An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control.
term replaced by: OMP:0007249
id: OMP:0007538
comment: The original term was deemed to be too granular and were replaced with OMP:0007249 decreased resistance to chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
has_exact_synonym: increased sensitivity to a urea derivative
has_narrow_synonym: increased sensitivity to hydroxyurea
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to a urea derivative

Axiom
database_cross_reference: CHEBI:44423
annotated target: increased sensitivity to hydroxyurea
annotated source: decreased resistance to a urea derivative
annotated property: has_narrow_synonym

abolished resistance to a urea derivative
type: Class
creation date: 2017-02-24T13:19:20Z
definition: A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished.
id: OMP:0007539
term replaced by: OMP:0007883
comment: The original term was deemed to be too granular and were replaced with OMP:0007883 ! abolished resistance to a chemical. When using this term for annotation, enter a database identifier for the specific chemical in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to a urea derivative

virus phenotype
type: Class
subclass of: microbial phenotype
creation date: 2017-04-19T13:39:46Z
definition: A microbial phenotype related to the form and structure of a virus.
id: OMP:0007540
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to the form and structure of a virus.
database_cross_reference: OMP:DR
annotated property: definition
annotated source: virus phenotype

virion morphology phenotype
type: Class
subclass of: virus phenotype
creation date: 2017-04-19T13:42:41Z
definition: A virus phenotype related to the form and structure of a virion.
id: OMP:0007541
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A virus phenotype related to the form and structure of a virion.
database_cross_reference: OMP:DR
annotated property: definition
annotated source: virion morphology phenotype

haploid fruiting phenotype
type: Class
subclass of: asexual reproduction phenotype
creation date: 2017-05-29T16:17:29Z
definition: An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating.
database_cross_reference: GO:0000905
id: OMP:0007542
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: homokaryotic fruiting phenotype
has_obo_namespace: microbial_phenotype
has_exact_synonym: monokaryotic fruiting phenotype
created by: siegele
in_subset: qc do not manually annotate

sporocarp development involved in asexual reproduction
type: Axiom
annotated target: GO:0000905
annotated source: haploid fruiting phenotype
annotated property: database_cross_reference

Axiom
annotated target: An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: haploid fruiting phenotype

presence of haploid fruiting
type: Class
subclass of: haploid fruiting phenotype
creation date: 2017-05-29T16:19:54Z
definition: A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting.
id: OMP:0007543
has_obo_namespace: microbial_phenotype
has_exact_synonym: presence of monokaryotic fruiting
created by: siegele

Axiom
annotated target: A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of haploid fruiting

absence of haploid fruiting
type: Class
subclass of: haploid fruiting phenotype
creation date: 2017-05-29T16:21:37Z
definition: A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting.
id: OMP:0007544
has_exact_synonym: absence of monokaryotic fruiting
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of haploid fruiting

altered haploid fruiting
type: Class
subclass of: altered asexual reproduction
subclass of: haploid fruiting phenotype
creation date: 2017-05-29T16:24:41Z
definition: A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control.
id: OMP:0007545
has_exact_synonym: altered monokaryotic fruiting
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered haploid fruiting

increased haploid fruiting
type: Class
subclass of: altered haploid fruiting
creation date: 2017-05-29T16:27:37Z
definition: An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control.
id: OMP:0007546
has_exact_synonym: increased monokaryotic fruiting
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased haploid fruiting

decreased haploid fruiting
type: Class
subclass of: altered haploid fruiting
creation date: 2017-05-29T16:27:37Z
definition: An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control.
id: OMP:0007547
has_exact_synonym: decreased monokaryotic fruiting
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased haploid fruiting

abolished haploid fruiting
type: Class
subclass of: absence of haploid fruiting
subclass of: decreased haploid fruiting
creation date: 2017-05-29T16:27:37Z
definition: A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished.
id: OMP:0007548
has_exact_synonym: abolished monokaryotic fruiting
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished haploid fruiting

altered biological process phenotype
type: Class
creation date: 2017-05-29T16:35:44Z
term replaced by: OMP:0007351
id: OMP:0007549
definition: This term was made obsolete because it is a duplicate of OMP:0007351.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
database_cross_reference: OMP:DAS
annotated target: This term was made obsolete because it is a duplicate of OMP:0007351.
annotated property: definition
annotated source: altered biological process phenotype

altered population growth - duplicate term
type: Class
creation date: 2017-05-29T16:37:18Z
definition: DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations.
term replaced by: OMP:0007157
id: OMP:0007550
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered population growth - duplicate term

increased rate of haploid fruiting
type: Class
subclass of: increased haploid fruiting
creation date: 2017-05-29T17:45:32Z
definition: An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
id: OMP:0007551
has_exact_synonym: increased rate of monokaryotic fruiting
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased rate of haploid fruiting

decreased rate of haploid fruiting
type: Class
subclass of: decreased haploid fruiting
creation date: 2017-05-29T17:48:15Z
definition: A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
id: OMP:0007552
has_exact_synonym: decreased rate of monokaryotic fruiting
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased rate of haploid fruiting

clamp cell morphology phenotype
type: Class
subclass of: hyphal morphology phenotype
creation date: 2017-05-30T14:37:57Z
definition: A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell.
id: OMP:0007553
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell.
database_cross_reference: DOI:10.1007/978-3-642-22916-9_10
database_cross_reference: FAO:0000060
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: clamp cell morphology phenotype

titan cell formation phenotype
type: Class
subclass of: microbial phenotype
creation date: 2017-05-30T15:28:59Z
definition: A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
id: OMP:0007554
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses.
database_cross_reference: FAO:0000063
database_cross_reference: OMP:DAS
database_cross_reference: PMID:21821718
annotated property: definition
annotated source: titan cell formation phenotype

multicellular microorganism morphology phenotype
type: Class
subclass of: microbial phenotype
creation date: 2017-05-30T15:39:20Z
definition: A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism.
id: OMP:0007555
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: multicellular microorganism morphology phenotype

hyphal morphology phenotype
type: Class
subclass of: multicellular microorganism morphology phenotype
creation date: 2017-05-30T16:03:57Z
definition: A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall.
id: OMP:0007556
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: hyphal morphology phenotype

filamentous growth of a multicellular organism phenotype
type: Class
subclass of: filamentous growth phenotype
creation date: 2017-05-30T16:34:41Z
definition: A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape.
id: OMP:0007557
has_exact_synonym: hyphal growth phenotype
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape.
database_cross_reference: GO:0044181
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: filamentous growth of a multicellular organism phenotype

clamp cell formation phenotype
type: Class
subclass of: filamentous growth of a multicellular organism phenotype
creation date: 2017-05-30T16:44:54Z
definition: A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae.
id: OMP:0007558
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:15162390
annotated property: definition
annotated source: clamp cell formation phenotype

clamp connection morphology phenotype
type: Class
subclass of: hyphal morphology phenotype
creation date: 2017-05-30T17:04:06Z
id: OMP:0007559
has_obo_namespace: microbial_phenotype
created by: siegele

conidiation phenotype
type: Class
subclass of: asexual sporulation phenotype
creation date: 2017-06-19T15:29:04Z
definition: An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores.
id: OMP:0007560
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores.
database_cross_reference: FAO:0000024
database_cross_reference: GO:0048315
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: conidiation phenotype

meiotic nuclear division phenotype
type: Class
subclass of: cellular process phenotype
creation date: 2017-06-20T15:55:03Z
definition: A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle.
id: OMP:0007561
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has_related_synonym: abnormal meiosis
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: normal meiosis

Axiom
annotated target: A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle.
database_cross_reference: GO:0140013
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: meiotic nuclear division phenotype

Axiom
database_cross_reference: FYPO:0000478
annotated target: normal meiosis
annotated source: meiotic nuclear division phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: FYPO:0000051
annotated target: abnormal meiosis
annotated source: meiotic nuclear division phenotype
annotated property: has_related_synonym

presence of meiotic nuclear division
type: Class
subclass of: meiotic nuclear division phenotype
creation date: 2017-06-20T16:09:31Z
definition: A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur.
database_cross_reference: FYPO:0000478
id: OMP:0007562
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur.
database_cross_reference: GO:00140013
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of meiotic nuclear division

normal meiosis
type: Axiom
annotated target: FYPO:0000478
annotated source: presence of meiotic nuclear division
annotated property: database_cross_reference

absence of meiotic nuclear division
type: Class
subclass of: meiotic nuclear division phenotype
creation date: 2017-06-20T16:09:31Z
definition: A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent.
id: OMP:0007563
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of meiotic nuclear division

altered meiotic nuclear division
type: Class
subclass of: altered cellular process
subclass of: meiotic nuclear division phenotype
creation date: 2017-06-20T16:09:31Z
definition: A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control.
id: OMP:0007564
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered meiotic nuclear division

abolished meiotic nuclear division
type: Class
subclass of: absence of meiotic nuclear division
subclass of: altered meiotic nuclear division
creation date: 2017-06-20T16:12:11Z
definition: An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished.
database_cross_reference: FYPO:0000474
id: OMP:0007565
created by: dsiegele
has_obo_namespace: microbial_phenotype

abolished meiosis
type: Axiom
annotated target: FYPO:0000474
annotated source: abolished meiotic nuclear division
annotated property: database_cross_reference

Axiom
annotated target: An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished.
database_cross_reference: FYPO:0000474
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished meiotic nuclear division

abolished meiosis I
type: Class
subclass of: abolished meiotic nuclear division
creation date: 2017-06-20T16:18:05Z
definition: An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur.
database_cross_reference: FYPO:0003378
id: OMP:0007566
created by: dsiegele
has_obo_namespace: microbial_phenotype

abolished meiosis I
type: Axiom
annotated target: FYPO:0003378
annotated source: abolished meiosis I
annotated property: database_cross_reference

Axiom
annotated target: An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur.
database_cross_reference: GO:0007127
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished meiosis I

abolished meiosis II
type: Class
subclass of: abolished meiotic nuclear division
creation date: 2017-06-20T16:18:05Z
definition: An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur.
database_cross_reference: FYPO:0003379
id: OMP:0007567
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur.
database_cross_reference: GO:0007135
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished meiosis II

abolished meiosis II
type: Axiom
annotated target: FYPO:0003379
annotated source: abolished meiosis II
annotated property: database_cross_reference

resistance to stress phenotype
type: Class
subclass of: population growth phenotype
creation date: 2017-06-21T14:34:05Z
definition: A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress.
id: OMP:0007568
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. Use a descendant of this term if you have assayed growth of cells exposed to a stress in culture. If you have assayed the response to a stress at the subcellular or molecular level, consider annotating to one of the descendants of 'response to stress phenotype' (OMP:0000173).
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: resistant to a stress
has_narrow_synonym: sensitive to a stress
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
annotated target: A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress.
database_cross_reference: FYPO:0002046
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to stress phenotype

resistance to oxidative stress phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-21T14:51:26Z
definition: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species.
id: OMP:0007569
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: resistance to hydrogen peroxide stress

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to oxidative stress phenotype

presence of resistance to oxidative stress
type: Class
subclass of: resistance to oxidative stress phenotype
creation date: 2017-06-21T14:58:47Z
definition: A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress.
id: OMP:0007570
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_exact_synonym: resistant to oxidative stress

Axiom
annotated target: A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of resistance to oxidative stress

absence of resistance to oxidative stress
type: Class
subclass of: resistance to oxidative stress phenotype
creation date: 2017-06-21T14:59:22Z
definition: A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress.
database_cross_reference: FYPO:0000726
id: OMP:0007571
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_exact_synonym: sensitive to oxidative stress

Axiom
annotated target: A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of resistance to oxidative stress

sensitive to oxidative stress
type: Axiom
annotated target: FYPO:0000726
annotated source: absence of resistance to oxidative stress
annotated property: database_cross_reference

altered resistance to stress
type: Class
subclass of: altered population growth
subclass of: resistance to stress phenotype
creation date: 2017-06-21T15:00:53Z
definition: A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control.
id: OMP:0007572
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to stress

resistance to pH shock phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-21T16:00:11Z
definition: A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5.
id: OMP:0007573
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity that a microbial population shows when exposed to environmental pH at or below 6.5.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to pH shock phenotype

resistance to alkaline pH stress phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-21T16:01:32Z
definition: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5).
id: OMP:0007574
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to alkaline pH stress phenotype

resistance to dessication stress phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-21T16:05:55Z
definition: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress.
id: OMP:0007575
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to dessication stress phenotype

resistance to radiation stress phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-21T16:08:28Z
definition: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation.
id: OMP:0007576
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to radiation stress phenotype

resistance to chemical stress phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-21T16:14:11Z
definition: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical.
id: OMP:0007577
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to chemical stress phenotype

resistance to cold shock phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-25T18:41:35Z
definition: A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe.
id: OMP:0007578
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a low temperature, usually below the lowest growth temperature of the microbe.
database_cross_reference: FYPO:0006084
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to cold shock phenotype

resistance to heat shock phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-25T18:42:01Z
definition: A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe.
id: OMP:0007579
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to heat shock. Heat shock is a form of temperature stress in which cells are briefly exposed to a high temperature, usually above the highest growth temperature of the microbe.
database_cross_reference: FYPO:0002045
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to heat shock phenotype

presence of resistance to cold shock
type: Class
subclass of: resistance to cold shock phenotype
creation date: 2017-06-25T18:48:47Z
definition: A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe.
id: OMP:0007580
has_exact_synonym: cold resistant
has_obo_namespace: microbial_phenotype
has_exact_synonym: resistant to low temperature
created by: siegele

Axiom
annotated target: A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of resistance to cold shock

absence of resistance to cold shock
type: Class
subclass of: resistance to cold shock phenotype
creation date: 2017-06-25T18:48:47Z
definition: A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe.
id: OMP:0007581
has_exact_synonym: cold sensitive
has_exact_synonym: cold sensitivity
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of resistance to cold shock

Axiom
database_cross_reference: YPO:0000148
annotated target: cold sensitive
annotated source: absence of resistance to cold shock
annotated property: has_exact_synonym

Axiom
database_cross_reference: APO:0000148
annotated target: cold sensitivity
annotated source: absence of resistance to cold shock
annotated property: has_exact_synonym

altered resistance to cold shock
type: Class
subclass of: altered resistance to stress
subclass of: resistance to cold shock phenotype
creation date: 2017-06-25T18:48:47Z
definition: A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control.
id: OMP:0007582
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to cold shock phenotype where the resistance or sensitivity of a microbial population to a cold shock is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to cold shock

presence of resistance to heat shock
type: Class
subclass of: resistance to heat shock phenotype
creation date: 2017-06-25T18:54:38Z
definition: A resistance to heat shock phenotype where a microbial population is resistant to heat shock.
id: OMP:0007583
has_obo_namespace: microbial_phenotype
has_exact_synonym: resistance to heat shock
has_exact_synonym: resistant to heat shock
created by: siegele

Axiom
database_cross_reference: FYPO:0002045
annotated target: resistance to heat shock
annotated source: presence of resistance to heat shock
annotated property: has_exact_synonym

Axiom
annotated target: A resistance to heat shock phenotype where a microbial population is resistant to heat shock.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of resistance to heat shock

absence of resistance to heat shock
type: Class
subclass of: resistance to heat shock phenotype
creation date: 2017-06-25T18:54:39Z
definition: A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock.
id: OMP:0007584
has_obo_namespace: microbial_phenotype
has_exact_synonym: sensitive to heat shock
created by: siegele

Axiom
annotated target: A resistance to heat shock phenotype where a microbial population stops growing and may begin to die when exposed to a heat shock.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of resistance to heat shock

altered resistance to heat
type: Class
subclass of: altered resistance to stress
subclass of: resistance to heat shock phenotype
creation date: 2017-06-25T18:54:39Z
definition: A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control.
id: OMP:0007585
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to heat shock phenotype where the resistance or sensitivity of a microbial population to heat shock is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to heat

altered resistance to chemical stress
type: Class
subclass of: altered resistance to stress
subclass of: resistance to chemical stress phenotype
creation date: 2017-06-25T19:35:57Z
definition: A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control.
id: OMP:0007586
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to chemical stress

increased resistance to cold shock
type: Class
subclass of: altered resistance to cold shock
creation date: 2017-06-25T22:21:53Z
definition: An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control.
id: OMP:0007587
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to cold shock

decreased resistance to cold shock
type: Class
subclass of: altered resistance to cold shock
creation date: 2017-06-25T22:21:53Z
definition: An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control.
id: OMP:0007588
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to cold shock

abolished resistance to cold shock
type: Class
subclass of: absence of resistance to cold shock
subclass of: decreased resistance to cold shock
creation date: 2017-06-25T22:21:53Z
definition: A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished.
id: OMP:0007589
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to cold shock

increased resistance to heat
type: Class
subclass of: altered resistance to heat
creation date: 2017-06-25T22:26:03Z
definition: An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control.
database_cross_reference: FYPO:0002626
id: OMP:0007590
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to heat

resistance to heat
type: Axiom
annotated target: FYPO:0002626
annotated source: increased resistance to heat
annotated property: database_cross_reference

decreased resistance to heat shock
type: Class
subclass of: altered resistance to heat
creation date: 2017-06-25T22:26:03Z
definition: An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control.
id: OMP:0007591
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to heat shock phenotype where the resistance of a microbial population to heat shock is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to heat shock

abolished resistance to heat shock
type: Class
subclass of: absence of resistance to heat shock
subclass of: decreased resistance to heat shock
creation date: 2017-06-25T22:26:03Z
definition: A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished.
id: OMP:0007592
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to heat shock phenotype where the resistance of a microbial population to heat shock is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to heat shock

resistance to freeze-thaw stress phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2017-06-26T17:11:33Z
definition: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing.
id: OMP:0007593
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: resistance to freeze-thaw stress phenotype

altered resistance to radiation stress
type: Class
subclass of: altered resistance to stress
subclass of: resistance to radiation stress phenotype
creation date: 2017-06-26T20:24:54Z
definition: A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control.
id: OMP:0007594
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered resistance to radiation stress

presence of population growth
type: Class
subclass of: population growth phenotype
creation date: 2017-06-27T12:19:09Z
definition: A population growth phenotype where a microbial population is able to reproduce.
id: OMP:0007595
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where a microbial population is able to reproduce.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of population growth

absence of population growth
type: Class
subclass of: population growth phenotype
creation date: 2017-06-27T12:19:09Z
definition: A population growth phenotype where the number of individuals in a microbial population does not increase.
id: OMP:0007596
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where the number of individuals in a microbial population does not increase.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of population growth

increased population growth
type: Class
subclass of: altered population growth
creation date: 2017-06-27T12:40:34Z
definition: An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control.
id: OMP:0007597
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased population growth

decreased population growth
type: Class
subclass of: altered population growth
creation date: 2017-06-27T12:40:34Z
definition: An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control.
id: OMP:0007598
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased population growth

abolished population growth
type: Class
subclass of: decreased population growth
creation date: 2017-06-27T12:40:34Z
definition: A decreased population growth phenotype where reproduction of a microbial population is abolished.
id: OMP:0007599
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased population growth phenotype where reproduction of a microbial population is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished population growth

presence of chromosome segregation
type: Class
subclass of: chromosome segregation phenotype
creation date: 2017-06-27T17:34:40Z
definition: A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
id: OMP:0007600
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of chromosome segregation

absence of chromosome segregation
type: Class
subclass of: chromosome segregation phenotype
creation date: 2017-06-27T17:34:40Z
definition: A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells.
id: OMP:0007601
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of chromosome segregation

DNA break phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2017-06-27T21:46:34Z
definition: A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA.
id: OMP:0007602
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: DNA break phenotype

presence of DNA breaks
type: Class
subclass of: DNA break phenotype
creation date: 2017-06-27T21:49:30Z
definition: A DNA break phenotype where breaks in chromosomal DNA occur.
id: OMP:0007603
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A DNA break phenotype where breaks in chromosomal DNA occur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of DNA breaks

absence of DNA breaks
type: Class
subclass of: DNA break phenotype
creation date: 2017-06-27T21:49:30Z
definition: A DNA break phenotype where breaks in chromosomal DNA don't occur.
id: OMP:0007604
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A DNA break phenotype where breaks in chromosomal DNA don't occur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of DNA breaks

altered frequency of DNA breaks
type: Class
subclass of: DNA break phenotype
creation date: 2017-06-27T21:49:30Z
definition: A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control.
id: OMP:0007605
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered frequency of DNA breaks

increased frequency of DNA breaks
type: Class
subclass of: altered frequency of DNA breaks
creation date: 2017-06-27T21:52:51Z
definition: An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control.
id: OMP:0007606
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased frequency of DNA breaks

decreased frequency of DNA breaks
type: Class
subclass of: altered frequency of DNA breaks
creation date: 2017-06-27T21:52:51Z
definition: An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control.
id: OMP:0007607
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased frequency of DNA breaks

abolished DNA breaks
type: Class
subclass of: absence of DNA breaks
subclass of: decreased frequency of DNA breaks
creation date: 2017-06-27T21:52:51Z
definition: A decreased frequency of DNA breaks phenotype where DNA breaks are abolished.
id: OMP:0007608
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased frequency of DNA breaks phenotype where DNA breaks are abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished DNA breaks

presence of single-strand DNA breaks
type: Class
subclass of: presence of DNA breaks
creation date: 2017-06-27T21:53:37Z
definition: A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur.
id: OMP:0007609
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of single-strand DNA breaks

presence of double-strand DNA breaks
type: Class
subclass of: presence of DNA breaks
creation date: 2017-06-27T21:53:37Z
definition: A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur.
id: OMP:0007610
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of double-strand DNA breaks

absence of single-strand DNA breaks
type: Class
subclass of: absence of DNA breaks
creation date: 2017-06-27T21:54:07Z
definition: An absence of DNA breaks phenotype where single-strand DNA breaks don't occur.
id: OMP:0007611
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of DNA breaks phenotype where single-strand DNA breaks don't occur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of single-strand DNA breaks

absence of double-strand DNA breaks
type: Class
subclass of: absence of DNA breaks
creation date: 2017-06-27T21:54:07Z
definition: An absence of DNA breaks phenotype where double-strand DNA breaks don't occur.
id: OMP:0007612
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An absence of DNA breaks phenotype where double-strand DNA breaks don't occur.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of double-strand DNA breaks

increased frequency of single-strand DNA breaks
type: Class
subclass of: increased frequency of DNA breaks
creation date: 2017-06-27T21:54:53Z
definition: An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control.
id: OMP:0007613
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased frequency of single-strand DNA breaks

increased frequency of double-strand DNA breaks
type: Class
subclass of: increased frequency of DNA breaks
creation date: 2017-06-27T21:54:53Z
definition: An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control.
id: OMP:0007614
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased frequency of double-strand DNA breaks

decreased frequency of single-strand DNA breaks
type: Class
subclass of: decreased frequency of DNA breaks
creation date: 2017-06-27T21:55:25Z
definition: A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control.
id: OMP:0007615
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased frequency of single-strand DNA breaks

decreased frequency of double-strand DNA breaks
type: Class
subclass of: decreased frequency of DNA breaks
creation date: 2017-06-27T21:55:25Z
definition: A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control.
id: OMP:0007616
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased frequency of double-strand DNA breaks

Holliday junction structure phenotype
type: Class
subclass of: genetic material phenotype
creation date: 2017-06-28T13:51:06Z
definition: A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA.
id: OMP:0007617
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: Holliday junction structure phenotype

presence of Holliday junction structures
type: Class
subclass of: Holliday junction structure phenotype
creation date: 2017-06-28T13:53:37Z
definition: A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA.
id: OMP:0007618
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of Holliday junction structures

absence of Holliday junction structures
type: Class
subclass of: Holliday junction structure phenotype
creation date: 2017-06-28T13:53:37Z
definition: A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA.
id: OMP:0007619
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of Holliday junction structures

altered frequency of Holliday junction structures
type: Class
subclass of: Holliday junction structure phenotype
creation date: 2017-06-28T13:53:37Z
definition: A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control.
id: OMP:0007620
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered frequency of Holliday junction structures

increased frequency of Holliday junction structures
type: Class
subclass of: altered frequency of Holliday junction structures
creation date: 2017-06-28T13:56:30Z
definition: An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control.
id: OMP:0007621
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased frequency of Holliday junction structures

decreased frequency of Holliday junction structures
type: Class
subclass of: altered frequency of Holliday junction structures
creation date: 2017-06-28T13:56:30Z
definition: An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control.
id: OMP:0007622
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased frequency of Holliday junction structures

abolished Holliday junction structures
type: Class
subclass of: decreased frequency of Holliday junction structures
creation date: 2017-06-28T13:56:30Z
definition: A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished.
id: OMP:0007623
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished Holliday junction structures

presence of chitin in cell wall
type: Class
subclass of: presence of cell wall
creation date: 2017-07-05T13:24:55Z
definition: A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029).
database_cross_reference: APO:0000199
id: OMP:0007624
created by: dsiegele
has_obo_namespace: microbial_phenotype

chitin deposition
type: Axiom
annotated target: APO:0000199
annotated source: presence of chitin in cell wall
annotated property: database_cross_reference

Axiom
annotated target: A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of chitin in cell wall

absence of chitin in cell wall
type: Class
subclass of: presence of cell wall
creation date: 2017-07-05T13:40:27Z
definition: A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029).
id: OMP:0007625
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029).
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of chitin in cell wall

altered cell wall chitin level
type: Class
subclass of: altered cell wall morphology
subclass of: altered polysaccharide level
creation date: 2017-07-05T13:42:09Z
definition: An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control.
id: OMP:0007626
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell wall chitin level

increased cell wall chitin level
type: Class
subclass of: altered cell wall chitin level
creation date: 2017-07-05T13:44:03Z
definition: An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control.
id: OMP:0007627
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased cell wall chitin level

decreased cell wall chitin level
type: Class
subclass of: altered cell wall chitin level
creation date: 2017-07-05T13:44:03Z
definition: An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control.
id: OMP:0007628
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased cell wall chitin level

abolished chitin in cell wall
type: Class
subclass of: decreased cell wall chitin level
creation date: 2017-07-05T13:44:03Z
definition: A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished.
id: OMP:0007629
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished chitin in cell wall

altered cell wall protein level
type: Class
subclass of: altered cell wall morphology
subclass of: altered protein level
creation date: 2017-07-05T14:26:32Z
definition: An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected.
id: OMP:0007630
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell wall protein level

increased cell wall protein level
type: Class
subclass of: altered cell wall protein level
creation date: 2017-07-05T16:47:42Z
definition: An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control.
id: OMP:0007631
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased cell wall protein level

cell phenotype
type: Class
subclass of: microbial phenotype
creation date: 2017-07-05T16:09:49Z
definition: A microbial phenotype that is observed at the level of an individual cell.
database_cross_reference: FYPO:0000002
id: OMP:0007632
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that is observed at the level of an individual cell.
database_cross_reference: FYPO:0000002
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cell phenotype

cell phenotype
type: Axiom
annotated target: FYPO:0000002
annotated source: cell phenotype
annotated property: database_cross_reference

cellular physical quality phenotype
type: Class
subclass of: cell phenotype
creation date: 2017-07-05T16:19:07Z
definition: A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component.
database_cross_reference: FYPO:0000136
id: OMP:0007633
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A cell phenotype that affects any physical object quality of a microbial cell, such as morphology, number, location, etc., of a cell or a cellular component.
database_cross_reference: FYPO:0000136
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: cellular physical quality phenotype

cellular physical quality phenotype
type: Axiom
annotated target: FYPO:0000136
annotated source: cellular physical quality phenotype
annotated property: database_cross_reference

altered level of substance in cell
type: Class
subclass of: altered cellular physical quality phenotype
subclass of: level of substance in cell phenotype
creation date: 2017-07-05T16:20:55Z
definition: A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control.
id: OMP:0007634
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control.
database_cross_reference: FYPO:0000989
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered level of substance in cell

altered protein level
type: Class
subclass of: altered level of substance in cell
creation date: 2017-07-05T16:24:26Z
definition: An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected.
id: OMP:0007635
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected.
database_cross_reference: FYPO:0000834
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered protein level

altered polysaccharide level
type: Class
subclass of: altered level of substance in cell
creation date: 2017-07-05T16:28:00Z
definition: An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control.
id: OMP:0007636
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control.
database_cross_reference: FYPO:0001085
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered polysaccharide level

altered cellular physical quality phenotype
type: Class
subclass of: cellular physical quality phenotype
subclass of: altered cell phenotype
creation date: 2017-07-05T16:31:01Z
definition: A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control.
id: OMP:0007637
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: abnormal cellular physical quality phenotype
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cellular physical quality phenotype where any physical object quality such as morphology, number, location, etc., of a microbial cell or a cellular component is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cellular physical quality phenotype

Axiom
database_cross_reference: FYPO:0004638
annotated target: abnormal cellular physical quality phenotype
annotated source: altered cellular physical quality phenotype
annotated property: has_narrow_synonym

altered cell phenotype
type: Class
subclass of: altered microbial phenotype
subclass of: cell phenotype
creation date: 2017-07-05T16:32:45Z
definition: A phenotype observed at the level of an individual cell that is altered relative to a designated control.
id: OMP:0007638
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A phenotype observed at the level of an individual cell that is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered cell phenotype

decreased cell wall protein level
type: Class
subclass of: altered cell wall protein level
creation date: 2017-07-05T16:47:42Z
definition: An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control.
id: OMP:0007639
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased cell wall protein level

abolished cell wall protein level
type: Class
subclass of: decreased cell wall protein level
creation date: 2017-07-05T16:47:42Z
definition: A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished.
id: OMP:0007640
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished cell wall protein level

population growth yield phenotype
type: Class
subclass of: population growth phenotype
creation date: 2017-07-11T02:11:36Z
definition: A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed.
id: OMP:0007641
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: population growth yield phenotype

altered population growth yield
type: Class
subclass of: population growth yield phenotype
creation date: 2017-07-11T02:22:26Z
definition: A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control.
id: OMP:0007642
has_exact_synonym: altered population density at growth saturation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered population growth yield

increased population growth yield
type: Class
subclass of: altered population growth yield
creation date: 2017-07-11T02:24:32Z
definition: An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control.
id: OMP:0007643
has_exact_synonym: increased population density at growth saturation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased population growth yield

decreased population growth yield
type: Class
subclass of: altered population growth yield
creation date: 2017-07-11T02:24:32Z
definition: An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control.
id: OMP:0007644
has_exact_synonym: decreased population density at growth saturation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased population growth yield

microbial lifestyle phenotype
type: Class
subclass of: microbial phenotype
creation date: 2017-07-24T14:41:58Z
definition: A microbial phenotype related to the typical way of life of a microbe.
id: OMP:0007645
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype related to the typical way of life of a microbe.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: microbial lifestyle phenotype

free-living lifestyle phenotype
type: Class
subclass of: microbial lifestyle phenotype
creation date: 2017-07-24T14:45:18Z
definition: A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities.
comment: Free-living lifestyle phenotypes may include the expression of flagella, sensing apparati used for photo- and chemotactic behaviour, and quorum sensing pathways. Please request more specific child terms, as needed.
id: OMP:0007646
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: free-living lifestyle phenotype

attached lifestyle phenotype
type: Class
subclass of: microbial lifestyle phenotype
creation date: 2017-07-24T14:59:31Z
definition: A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface.
id: OMP:0007647
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like.
has_exact_synonym: anchored lifestyle phenotype
has_obo_namespace: microbial_phenotype
has_related_synonym: sessile lifestyle phenotype
created by: siegele

Axiom
annotated target: A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: attached lifestyle phenotype

presence of an attached lifestyle
type: Class
subclass of: attached lifestyle phenotype
creation date: 2017-07-26T17:24:06Z
definition: An attached lifestyle phenotype where a microbe typically grows and reproduces while physically attached to a is the summative outcome of multiple phenotypes that, acting together, typically provide a microbe some advantage while competing for niche space while it is physically anchored to some portion of solid material. May include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like.
id: OMP:0007648
has_obo_namespace: microbial_phenotype
created by: siegele

mitomycin resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2017-08-01T19:36:13Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces.
id: OMP:0007649
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
has_narrow_synonym: mitomycin C resistance phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces.
database_cross_reference: CHEBI:25357
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: mitomycin resistance phenotype

Axiom
database_cross_reference: CHEBI:27504
annotated target: mitomycin C resistance phenotype
annotated source: mitomycin resistance phenotype
annotated property: has_narrow_synonym

resistant to mitomycin
type: Class
subclass of: mitomycin resistance phenotype
creation date: 2017-08-01T19:40:50Z
id: OMP:0007650
has_obo_namespace: microbial_phenotype
created by: siegele

not resistant to mitomycin
type: Class
subclass of: mitomycin resistance phenotype
creation date: 2017-08-01T19:40:50Z
id: OMP:0007651
has_obo_namespace: microbial_phenotype
created by: siegele

altered mitomycin resistance
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: mitomycin resistance phenotype
creation date: 2017-08-01T19:40:50Z
definition: A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control.
id: OMP:0007652
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered mitomycin resistance

increased resistance to mitomycin
type: Class
subclass of: altered mitomycin resistance
creation date: 2017-08-01T19:42:07Z
definition: An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control.
id: OMP:0007653
has_exact_synonym: decreased sensitivity to mitomycin
has_related_synonym: increased resistance to mitomycin C
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased resistance to mitomycin

Axiom
database_cross_reference: CHEBI:27504
annotated target: increased resistance to mitomycin C
annotated source: increased resistance to mitomycin
annotated property: has_related_synonym

Axiom
database_cross_reference: CHEBI:25357
annotated target: decreased sensitivity to mitomycin
annotated source: increased resistance to mitomycin
annotated property: has_exact_synonym

decreased resistance to mitomycin
type: Class
subclass of: altered mitomycin resistance
creation date: 2017-08-01T19:42:07Z
definition: An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control.
id: OMP:0007654
has_narrow_synonym: decreased resistance to mitomycin C
has_exact_synonym: increased sensitivity to mitomycin
has_narrow_synonym: increased sensitivity to mitomycin C
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: CHEBI:27504
annotated target: increased sensitivity to mitomycin C
annotated source: decreased resistance to mitomycin
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:27504
annotated target: decreased resistance to mitomycin C
annotated source: decreased resistance to mitomycin
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:25357
annotated target: increased sensitivity to mitomycin
annotated source: decreased resistance to mitomycin
annotated property: has_exact_synonym

Axiom
annotated target: An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased resistance to mitomycin

abolished resistance to mitomycin
type: Class
subclass of: not resistant to mitomycin
subclass of: decreased resistance to mitomycin
creation date: 2017-08-01T19:42:07Z
definition: A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished.
id: OMP:0007655
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished resistance to mitomycin

level of substance in cell phenotype
type: Class
subclass of: cellular physical quality phenotype
creation date: 2017-08-02T00:45:28Z
id: OMP:0007656
has_obo_namespace: microbial_phenotype
created by: siegele

level of cellular reactive oxygen species phenotype
type: Class
subclass of: level of substance in cell phenotype
creation date: 2017-08-02T00:47:58Z
definition: A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell.
id: OMP:0007657
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell.
database_cross_reference: FYPO:0003004
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: level of cellular reactive oxygen species phenotype

presence of cellular reactive oxygen species
type: Class
subclass of: level of cellular reactive oxygen species phenotype
creation date: 2017-08-02T00:49:40Z
id: OMP:0007658
has_obo_namespace: microbial_phenotype
created by: siegele

absence of cellular reactive oxygen species
type: Class
subclass of: level of cellular reactive oxygen species phenotype
creation date: 2017-08-02T00:49:40Z
id: OMP:0007659
has_obo_namespace: microbial_phenotype
created by: siegele

altered level of cellular reactive oxygen species
type: Class
subclass of: level of cellular reactive oxygen species phenotype
creation date: 2017-08-02T00:49:40Z
definition: A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control.
id: OMP:0007660
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered level of cellular reactive oxygen species

increased level of cellular reactive oxygen species
type: Class
subclass of: altered level of cellular reactive oxygen species
creation date: 2017-08-02T00:49:40Z
definition: An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control.
id: OMP:0007661
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased level of cellular reactive oxygen species

decreased level of cellular reactive oxygen species
type: Class
subclass of: altered level of cellular reactive oxygen species
creation date: 2017-08-02T00:49:40Z
id: OMP:0007662
has_obo_namespace: microbial_phenotype
created by: siegele

abolished cellular reactive oxygen species
type: Class
subclass of: decreased level of cellular reactive oxygen species
creation date: 2017-08-02T00:49:40Z
id: OMP:0007663
has_obo_namespace: microbial_phenotype
created by: siegele

bulging cell morphology
type: Class
subclass of: altered cell morphology
creation date: 2017-09-28T10:15:36Z
definition: An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control.
id: OMP:0007666
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control.
database_cross_reference: OMP:DAS
database_cross_reference: PMID:27238023
annotated property: definition
annotated source: bulging cell morphology

filamenting cell morphology
type: Class
subclass of: altered cell morphology
creation date: 2017-09-28T10:36:55Z
definition: An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide.
id: OMP:0007667
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: filamenting cell morphology

presence of transport
type: Class
subclass of: transport phenotype
creation date: 2017-10-02T15:29:18Z
definition: A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells.
id: OMP:0007668
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of transport

absence of transport
type: Class
subclass of: transport phenotype
creation date: 2017-10-02T15:29:18Z
definition: A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells.
id: OMP:0007669
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of transport

altered transport
type: Class
subclass of: transport phenotype
creation date: 2017-10-02T15:29:18Z
definition: A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control.
id: OMP:0007670
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered transport

increased transport
type: Class
subclass of: altered transport
creation date: 2017-10-02T15:29:18Z
definition: An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control.
id: OMP:0007671
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased transport

decreased transport
type: Class
subclass of: altered transport
creation date: 2017-10-02T15:29:18Z
definition: An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control.
id: OMP:0007672
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: decreased transport

abolished transport
type: Class
subclass of: absence of transport
subclass of: decreased transport
creation date: 2017-10-02T15:29:18Z
definition: A decreased transport phenotype where transport of a substrate(s) is abolished.
id: OMP:0007673
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased transport phenotype where transport of a substrate(s) is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished transport

molecular function phenotype
type: Class
subclass of: microbial phenotype
creation date: 2017-10-02T15:42:03Z
definition: A microbial phenotype that affects a specific molecular function.
id: OMP:0007674
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that affects a specific molecular function.
database_cross_reference: FYPO:0000652
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: molecular function phenotype

transporter activity phenotype
type: Class
subclass of: molecular function phenotype
creation date: 2017-10-02T15:43:05Z
definition: A molecular function phenotype that affects a transporter activity in a microbe.
id: OMP:0007675
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A molecular function phenotype that affects a transporter activity in a microbe.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: transporter activity phenotype

presence of transporter activity
type: Class
subclass of: transporter activity phenotype
creation date: 2017-10-02T15:43:54Z
definition: A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate.
id: OMP:0007676
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of transporter activity

absence of transporter activity
type: Class
subclass of: transporter activity phenotype
creation date: 2017-10-02T15:43:54Z
definition: A transporter activity phenotype where a microbe lacks a specific transporter activity.
id: OMP:0007677
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A transporter activity phenotype where a microbe lacks a specific transporter activity.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: absence of transporter activity

altered transporter activity
type: Class
subclass of: transporter activity phenotype
creation date: 2017-10-02T15:43:54Z
definition: An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control.
id: OMP:0007678
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: altered transporter activity

decreased transporter activity
type: Class
subclass of: altered transporter activity
creation date: 2017-10-02T15:44:25Z
definition: An altered transporter activity phenotype where the observed rate of a specified transporter activity is decreased relative to a designated control.
id: OMP:0007679
has_obo_namespace: microbial_phenotype
created by: siegele

increased transporter activity
type: Class
subclass of: altered transporter activity
creation date: 2017-10-02T15:44:25Z
definition: An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control.
id: OMP:0007680
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased transporter activity

abolished transporter activity
type: Class
subclass of: absence of transporter activity
subclass of: decreased transporter activity
creation date: 2017-10-02T15:44:25Z
definition: A decreased transporter activity phenotype where a specified transporter activity is abolished.
id: OMP:0007681
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased transporter activity phenotype where a specified transporter activity is abolished.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: abolished transporter activity

terminal phenotype
type: Class
subclass of: microbial phenotype
creation date: 2017-10-10T10:22:47Z
definition: A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable.
id: OMP:0007682
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: dsiegele
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that is the phenotype exhibited by a microbe as it becomes nonviable.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: terminal phenotype

bending cell morphology
type: Class
subclass of: altered cell morphology
creation date: 2017-11-14T10:52:24Z
id: OMP:0007683
created by: dsiegele
has_obo_namespace: microbial_phenotype

cell growth phenotype
type: Class
subclass of: growth phenotype
subclass of: cellular process phenotype
creation date: 2017-11-30T10:36:59Z
definition: A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
id: OMP:0007684
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: normal cell growth

Axiom
database_cross_reference: FYPO:0002062
annotated target: normal cell growth
annotated source: cell growth phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
database_cross_reference: GO:0016049
database_cross_reference: OMP:das
annotated property: definition
annotated source: cell growth phenotype

presence of cell growth
type: Class
subclass of: cell growth phenotype
creation date: 2017-11-30T10:42:26Z
definition: A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007685
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of cell growth

absence of cell growth
type: Class
subclass of: cell growth phenotype
creation date: 2017-11-30T10:42:26Z
definition: A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007686
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of cell growth

altered cell growth
type: Class
subclass of: altered cellular process
subclass of: cell growth phenotype
creation date: 2017-11-30T10:42:26Z
definition: A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007687
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell growth

decreased cell growth
type: Class
subclass of: altered cell growth
creation date: 2017-11-30T10:56:24Z
definition: An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007688
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cell growth

increased cell growth
type: Class
subclass of: altered cell growth
creation date: 2017-11-30T10:56:24Z
definition: An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007689
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased cell growth

abolished cell growth
type: Class
subclass of: absence of cell growth
subclass of: decreased cell growth
creation date: 2017-11-30T10:56:24Z
definition: A decreased cell growth phenotype where cell growth is abolished.
id: OMP:0007690
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased cell growth phenotype where cell growth is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished cell growth

vegetative cell growth phenotype
type: Class
subclass of: cell growth phenotype
creation date: 2017-12-01T15:44:00Z
definition: A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
id: OMP:0007691
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
database_cross_reference: OMP:das
annotated property: definition
annotated source: vegetative cell growth phenotype

presence of vegetative cell growth
type: Class
subclass of: vegetative cell growth phenotype
creation date: 2017-12-01T15:47:36Z
definition: A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007692
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0002085
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of vegetative cell growth

absence of vegetative cell growth
type: Class
subclass of: vegetative cell growth phenotype
creation date: 2017-12-01T15:47:36Z
definition: A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007693
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of vegetative cell growth

altered vegetative cell growth
type: Class
subclass of: altered cell growth
subclass of: vegetative cell growth phenotype
creation date: 2017-12-01T15:47:36Z
definition: A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
database_cross_reference: FYPO:0003154
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007694
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
database_cross_reference: FYPO:0003154
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell growth

abnormal vegetative cell growth
type: Axiom
annotated target: FYPO:0003154
annotated source: altered vegetative cell growth
annotated property: database_cross_reference

increased vegetative cell growth
type: Class
subclass of: altered vegetative cell growth
creation date: 2017-12-01T15:47:36Z
definition: An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007695
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased vegetative cell growth

decreased vegetative cell growth
type: Class
subclass of: altered vegetative cell growth
creation date: 2017-12-01T15:47:37Z
definition: An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007696
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased vegetative cell growth

abolished vegetative cell growth
type: Class
subclass of: absence of vegetative cell growth
subclass of: decreased vegetative cell growth
creation date: 2017-12-01T15:47:37Z
definition: A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished.
comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms.
id: OMP:0007697
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished vegetative cell growth

cell population phenotype
type: Class
subclass of: population phenotype
creation date: 2017-12-04T20:08:24Z
definition: A population phenotype that is observed at the level of a population of microbial cells.
id: OMP:0007698
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: cell population phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A population phenotype that is observed at the level of a population of microbial cells.
database_cross_reference: FYPO:0002057
database_cross_reference: OMP:das
annotated property: definition
annotated source: cell population phenotype

Axiom
database_cross_reference: FYPO:0002057
annotated target: cell population phenotype
annotated source: cell population phenotype
annotated property: has_exact_synonym

nonviable cell population
type: Class
subclass of: cell population viability phenotype
creation date: 2017-12-04T20:14:07Z
definition: A cell population phenotype in which none of the cells in the population are viable.
database_cross_reference: FYPO:0002059
id: OMP:0007699
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population phenotype in which none of the cells in the population are viable.
database_cross_reference: FYPO:0002059
database_cross_reference: OMP:das
annotated property: definition
annotated source: nonviable cell population

nonviable vegetative cell population
type: Class
subclass of: nonviable cell population
creation date: 2017-12-04T20:15:43Z
definition: A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle.
id: OMP:0007700
has_narrow_synonym: inviable vegetative cell population
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0002061
annotated target: inviable vegetative cell population
annotated source: nonviable vegetative cell population
annotated property: has_narrow_synonym

Axiom
annotated target: A cell population phenotype in which all cells in the population are nonviable in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0002061
database_cross_reference: OMP:das
annotated property: definition
annotated source: nonviable vegetative cell population

nonviable spore population
type: Class
subclass of: nonviable cell population
creation date: 2017-12-04T20:19:36Z
definition: A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate.
database_cross_reference: FYPO:000064
id: OMP:0007701
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population phenotype in which none of the cells in a population of spores are viable. Nonviable spores do not germinate.
database_cross_reference: FYPO:0000647
database_cross_reference: OMP:das
annotated property: definition
annotated source: nonviable spore population

inviable spore population
type: Axiom
annotated target: FYPO:000064
annotated source: nonviable spore population
annotated property: database_cross_reference

decreased cell population viability
type: Class
subclass of: altered cell population viability
creation date: 2017-12-04T20:23:38Z
definition: An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control.
id: OMP:0007702
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cell population viability

increased cell population viability
type: Class
subclass of: altered cell population viability
creation date: 2017-12-04T20:23:38Z
definition: An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control.
id: OMP:0007703
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell population viability phenotype where the proportion of cells that survive a specified treatment is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased cell population viability

abolished cell population viability
type: Class
subclass of: decreased cell population viability
creation date: 2017-12-04T20:23:38Z
id: OMP:0007704
has_obo_namespace: microbial_phenotype
created by: siegele

cell population viability phenotype
type: Class
subclass of: population viability phenotype
subclass of: cell population phenotype
creation date: 2017-12-04T20:26:35Z
definition: A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment.
id: OMP:0007705
has_exact_synonym: cell population viability
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0002057
annotated target: cell population viability
annotated source: cell population viability phenotype
annotated property: has_exact_synonym

Axiom
annotated target: A cell population phenotype that describes the proportion of a microbial population that is able to survive a particular treatment.
database_cross_reference: OMP:das
annotated property: definition
annotated source: cell population viability phenotype

viable spore population
type: Class
subclass of: viable cell population
creation date: 2017-12-05T00:44:44Z
definition: A cell population phenotype in which cells in a population of spores are viable.
database_cross_reference: FYPO:0003612
id: OMP:0007706
has_obo_namespace: microbial_phenotype
created by: siegele

viable spore population
type: Axiom
annotated target: FYPO:0003612
annotated source: viable spore population
annotated property: database_cross_reference

Axiom
annotated target: A cell population phenotype in which cells in a population of spores are viable.
database_cross_reference: FYPO:0003612
database_cross_reference: OMP:das
annotated property: definition
annotated source: viable spore population

increased vegetative cell length
type: Class
subclass of: increased cell length
subclass of: altered vegetative cell size
creation date: 2017-12-19T16:16:41Z
definition: An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control.
database_cross_reference: FYPO:0001122
id: OMP:0007707
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased vegetative cell length

elongated vegetative cell
type: Axiom
annotated target: FYPO:0001122
annotated source: increased vegetative cell length
annotated property: database_cross_reference

altered vegetative cell shape
type: Class
subclass of: altered cell shape
subclass of: altered vegetative cell morphology
creation date: 2017-12-19T16:26:51Z
definition: An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
id: OMP:0007708
has_narrow_synonym: abnormal vegetative cell shape
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0002196
annotated target: abnormal vegetative cell shape
annotated source: altered vegetative cell shape
annotated property: has_narrow_synonym

Axiom
annotated target: An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell shape

more convex colony
type: Class
subclass of: altered colony morphology
creation date: 2017-12-19T16:38:38Z
definition: An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony.
id: OMP:0007709
has_related_synonym: cone-shaped n
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony.
database_cross_reference: OMP:das
annotated property: definition
annotated source: more convex colony

conjugation without glucose starvation
type: Class
subclass of: altered conjugation
creation date: 2017-12-19T16:56:43Z
definition: An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation.
id: OMP:0007710
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation.
database_cross_reference: FYPO:0001864
database_cross_reference: OMP:das
annotated property: definition
annotated source: conjugation without glucose starvation

conjugation without nitrogen starvation
type: Class
subclass of: altered conjugation
creation date: 2017-12-19T16:59:49Z
definition: An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation.
id: OMP:0007711
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation.
database_cross_reference: FYPO:0003031
database_cross_reference: OMP:das
annotated property: definition
annotated source: conjugation without nitrogen starvation

branching of vegetative cell
type: Class
subclass of: altered vegetative cell shape
creation date: 2017-12-19T17:04:41Z
definition: An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control.
id: OMP:0007712
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control.
database_cross_reference: FYPO:0000015
database_cross_reference: OMP:das
annotated property: definition
annotated source: branching of vegetative cell

altered vegetative cell size
type: Class
subclass of: altered cell size
subclass of: altered vegetative cell morphology
creation date: 2017-12-19T17:36:21Z
definition: An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control.
id: OMP:0007713
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An xx phenotype observed in the vegetative growth phase of the life cycle in which the volume or dimensions of a microbial cell are altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell size

curving vegetative cell
type: Class
subclass of: altered vegetative cell shape
creation date: 2017-12-19T17:39:34Z
definition: An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line.
id: OMP:0007714
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line.
database_cross_reference: FYPO:0000016
database_cross_reference: OMP:das
annotated property: definition
annotated source: curving vegetative cell

altered vegetative cell morphology
type: Class
subclass of: altered cell morphology
creation date: 2017-12-19T17:49:16Z
definition: An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
id: OMP:0007715
has_narrow_synonym: abnormal vegetative cell morphology
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0001118
annotated target: abnormal vegetative cell morphology
annotated source: altered vegetative cell morphology
annotated property: has_narrow_synonym

Axiom
annotated target: An altered cell morphology phenotype where the morphology (i.e., size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control.
database_cross_reference: FYPO:0001315
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell morphology

viable vegetative cell
type: Class
subclass of: presence of microbial cell viability
creation date: 2017-12-19T17:54:52Z
definition: A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions.
id: OMP:0007716
has_obo_namespace: microbial_phenotype
created by: siegele
has_exact_synonym: viable vegetative cell

Axiom
annotated target: A cell viability phenotype observed in the vegetative growth phase of the life cycle where a microbial cell is able to survive and go on to grow and reproduce in the specified conditions.
database_cross_reference: FYPO:0001491
database_cross_reference: OMP:das
annotated property: definition
annotated source: viable vegetative cell

Axiom
database_cross_reference: FYPO:0001491
annotated target: viable vegetative cell
annotated source: viable vegetative cell
annotated property: has_exact_synonym

decreased viability of vegetative microbial cell
type: Class
subclass of: decreased cell viability
subclass of: altered vegetative cell viability
creation date: 2017-12-19T17:56:29Z
definition: An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control.
comment: Note that if you have done an experiment that assays the viability of a population of microbial cells, such as looking at colony growth or growth in liquid culture, you should also annotate to 'inviable cell population' (OMP:xx) or one of its descendants.
id: OMP:0007717
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased viability of vegetative microbial cell

abolished viability of vegetative microbial cell
type: Class
subclass of: decreased viability of vegetative microbial cell
creation date: 2017-12-19T17:58:40Z
definition: An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished.
id: OMP:0007718
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered microbial cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished viability of vegetative microbial cell

decreased cell volume
type: Class
subclass of: decreased cell size
creation date: 2017-12-19T18:18:27Z
definition: An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control.
id: OMP:0007719
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cell volume

decreased vegetative cell volume
type: Class
subclass of: altered vegetative cell size
subclass of: decreased cell volume
creation date: 2017-12-19T18:19:35Z
definition: An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
id: OMP:0007720
has_obo_namespace: microbial_phenotype
created by: siegele
has_exact_synonym: small vegetative cell

Axiom
database_cross_reference: FYPO:0000645
annotated target: small vegetative cell
annotated source: decreased vegetative cell volume
annotated property: has_exact_synonym

Axiom
annotated target: An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased vegetative cell volume

increased cell volume
type: Class
subclass of: increased cell size
creation date: 2017-12-20T16:40:08Z
id: OMP:0007721
has_obo_namespace: microbial_phenotype
created by: siegele

increased vegetative cell diameter
type: Class
subclass of: increased cell diameter
subclass of: altered vegetative cell size
creation date: 2017-12-20T16:41:30Z
definition: An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control.
id: OMP:0007722
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased vegetative cell diameter

decreased vegetative cell length
type: Class
subclass of: decreased cell length
subclass of: altered vegetative cell size
creation date: 2017-12-20T16:46:25Z
definition: An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
id: OMP:0007723
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased vegetative cell length

altered vegetative cell viability
type: Class
subclass of: altered microbial cell viability
creation date: 2017-12-20T16:59:28Z
definition: A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control.
id: OMP:0007724
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell viability phenotype observed in the vegetative phase of the growth cycle where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce in the specified conditions is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell viability

nonviable after spore germination
type: Class
subclass of: absence of microbial vegetative cell viability
creation date: 2017-12-20T16:59:57Z
definition: A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified.
id: OMP:0007725
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A vegetative cell viability phenotype in which a microbial spore germinates but fails to produce dividing cells that can survive and go on to grow and reproduce under the conditions specified.
database_cross_reference: FYPO:0000316
database_cross_reference: OMP:das
annotated property: definition
annotated source: nonviable after spore germination

abolished spore viability
type: Class
subclass of: nonviable spore
subclass of: decreased spore viability
creation date: 2017-12-20T17:07:55Z
definition: An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate.
id: OMP:0007726
has_exact_synonym: inviable spore
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered spore viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. A nonviable spore does not germinate.
database_cross_reference: FYPO:0002151
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished spore viability

Axiom
database_cross_reference: FYPO:0002151
annotated target: inviable spore
annotated source: abolished spore viability
annotated property: has_exact_synonym

tapering vegetative cell
type: Class
subclass of: altered vegetative cell shape
creation date: 2017-12-20T17:25:04Z
definition: An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control.
id: OMP:0007727
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: tapering vegetative cell

altered mitotic cell cycle
type: Class
subclass of: altered cell cycle
creation date: 2017-12-20T17:40:46Z
definition: A cellular process phenotype in which the rate, frequency, or occurrence of progression of a cell through a mitotic cell cycle is altered relative to a designated control.
id: OMP:0007728
has_narrow_synonym: abnormal mitotic cell cycle
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0000059
annotated target: abnormal mitotic cell cycle
annotated source: altered mitotic cell cycle
annotated property: has_narrow_synonym

altered vegetative cell population viability
type: Class
subclass of: altered cell population viability
creation date: 2017-12-20T23:46:00Z
definition: An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
id: OMP:0007729
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell population viability

decreased vegetative cell population viability
type: Class
subclass of: decreased cell population viability
subclass of: altered vegetative cell population viability
creation date: 2017-12-20T23:47:24Z
definition: An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control.
id: OMP:0007730
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased vegetative cell population viability

abolished vegetative cell population viability
type: Class
subclass of: decreased vegetative cell population viability
creation date: 2017-12-20T23:48:30Z
definition: An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished.
id: OMP:0007731
has_exact_synonym: inviable vegetative cell population
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished vegetative cell population viability

Axiom
database_cross_reference: FYPO:0002061
annotated target: inviable vegetative cell population
annotated source: abolished vegetative cell population viability
annotated property: has_exact_synonym

septation index phenotype
type: Class
subclass of: cell population phenotype
creation date: 2017-12-21T00:00:58Z
definition: A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time.
id: OMP:0007732
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time.
database_cross_reference: FYPO:0001903
database_cross_reference: OMP:das
annotated property: definition
annotated source: septation index phenotype

presence of a septation index
type: Class
subclass of: septation index phenotype
creation date: 2017-12-21T00:03:57Z
id: OMP:0007733
has_obo_namespace: microbial_phenotype
created by: siegele

altered septation index
type: Class
subclass of: septation index phenotype
creation date: 2017-12-21T00:04:30Z
definition: A septation index phenotype where the septation index is altered relative to a designated control.
id: OMP:0007734
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A septation index phenotype where the septation index is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered septation index

decreased septation index
type: Class
subclass of: altered septation index
creation date: 2017-12-21T00:05:56Z
comment: A septation index of zero indicates cell cycle arrest.
definition: An altered septation index phenotype in which the septation index is lower than a designated control.
id: OMP:0007735
has_narrow_synonym: decreased septation index
has_obo_namespace: microbial_phenotype
has_exact_synonym: reduced septation index
created by: siegele

Axiom
database_cross_reference: FYPO:0001128
annotated target: decreased septation index
annotated source: decreased septation index
annotated property: has_narrow_synonym

Axiom
annotated target: An altered septation index phenotype in which the septation index is lower than a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased septation index

increased septation index
type: Class
subclass of: altered septation index
creation date: 2017-12-21T00:08:19Z
definition: An altered septation index phenotype where the septation index is increased relative to a designated control.
id: OMP:0007736
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered septation index phenotype where the septation index is increased relative to a designated control.
database_cross_reference: FYPO:0000650
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased septation index

more irregular colony margin
type: Class
subclass of: altered colony morphology
creation date: 2017-12-21T13:33:02Z
definition: An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical.
id: OMP:0007737
has_exact_synonym: irregular colony morphology
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical.
database_cross_reference: FYPO:0001404
database_cross_reference: OMP:das
annotated property: definition
annotated source: more irregular colony margin

Axiom
database_cross_reference: FYPO:0001404
annotated target: irregular colony morphology
annotated source: more irregular colony margin
annotated property: has_exact_synonym

germ tube morphology phenotype
type: Class
subclass of: cell morphology phenotype
creation date: 2017-12-21T13:50:25Z
definition: A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination.
id: OMP:0007738
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A cell morphology phenotype relating to the form and structure of the germ tube, which is the slender tubular outgrowth first produced by many spores upon germination.
database_cross_reference: BTO:0004822
database_cross_reference: GO::0032179
database_cross_reference: OMP:das
annotated property: definition
annotated source: germ tube morphology phenotype

altered germ tube morphology
type: Class
subclass of: germ tube morphology phenotype
creation date: 2017-12-21T13:52:14Z
definition: A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control.
id: OMP:0007739
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell morphology phenotype where the shape, size, structure, or number of germ tubes is altered relative to a designated control.
database_cross_reference: GO:0032179
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered germ tube morphology

elongated germ tube morphology
type: Class
subclass of: altered germ tube morphology
creation date: 2017-12-21T13:56:59Z
definition: An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control.
id: OMP:0007740
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: elongated germ tube morphology

vegetative cell lysis phenotype
type: Class
subclass of: cell lysis phenotype
subclass of: vegetative cell phenotype
creation date: 2018-01-01T13:57:14Z
definition: A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost.
id: OMP:0007741
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost.
database_cross_reference: FYPO:0000647
database_cross_reference: OMP:das
annotated property: definition
annotated source: vegetative cell lysis phenotype

presence of vegetative cell lysis
type: Class
subclass of: vegetative cell lysis phenotype
creation date: 2018-01-01T14:02:32Z
definition: A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs.
id: OMP:0007742
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of vegetative cell lysis

absence of vegetative cell lysis
type: Class
subclass of: vegetative cell lysis phenotype
creation date: 2018-01-01T14:02:32Z
definition: A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur.
id: OMP:0007743
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of vegetative cell lysis

altered vegetative cell lysis
type: Class
subclass of: vegetative cell lysis phenotype
subclass of: altered vegetative cell phenotype
creation date: 2018-01-01T14:02:32Z
definition: A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
id: OMP:0007744
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell lysis

vegetative cell phenotype
type: Class
subclass of: cell phenotype
creation date: 2018-01-01T14:15:57Z
definition: A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle.
id: OMP:0007745
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle.
database_cross_reference: FYPO:0001320
database_cross_reference: OMP:das
annotated property: definition
annotated source: vegetative cell phenotype

altered vegetative cell phenotype
type: Class
subclass of: altered cell phenotype
subclass of: vegetative cell phenotype
creation date: 2018-01-01T14:16:46Z
definition: A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control.
id: OMP:0007746
has_narrow_synonym: abnormal vegetative cell phenotype
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative cell phenotype

Axiom
database_cross_reference: FYPO:FYPO:0003755
annotated target: abnormal vegetative cell phenotype
annotated source: altered vegetative cell phenotype
annotated property: has_narrow_synonym

altered actin cytoskeleton morphology during vegetative growth
type: Class
subclass of: altered actin cytoskeleton morphology
creation date: 2018-01-10T16:46:28Z
definition: An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control.
id: OMP:0007747
has_narrow_synonym: abnormal actin cytoskeleton morphology during vegetative cell growth
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0000350
annotated target: abnormal actin cytoskeleton morphology during vegetative cell growth
annotated source: altered actin cytoskeleton morphology during vegetative growth
annotated property: has_narrow_synonym

Axiom
annotated target: An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton in a cell that is in the vegetative phase of the growth cycle is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered actin cytoskeleton morphology during vegetative growth

cellular physical quality phenotype during vegetative growth
type: Class
subclass of: cellular physical quality phenotype
creation date: 2018-01-10T17:26:54Z
definition: A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle.
id: OMP:0007748
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A phenotype related to any physical object quality, such as morphology, number, location, etc., of a microbial cell or a cellular component in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0001321
database_cross_reference: OMP:das
annotated property: definition
annotated source: cellular physical quality phenotype during vegetative growth

altered cellular physical quality phenotype during vegetative growth
type: Class
subclass of: altered cellular physical quality phenotype
subclass of: cellular physical quality phenotype during vegetative growth
creation date: 2018-01-10T17:32:50Z
definition: A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control.
id: OMP:0007749
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular physical quality phenotype observed during vegetative growth where a cellular physical quality of a microbial cell or cellular component is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cellular physical quality phenotype during vegetative growth

subcellular component phenotype
type: Class
subclass of: cellular physical quality phenotype
creation date: 2018-01-10T17:44:33Z
definition: A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part.
id: OMP:0007750
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of a microbial cell part.
database_cross_reference: OMP:das
annotated property: definition
annotated source: subcellular component phenotype

altered subcellular component phenotype
type: Class
subclass of: altered cellular physical quality phenotype
subclass of: subcellular component phenotype
creation date: 2018-01-10T17:46:52Z
definition: A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control.
id: OMP:0007751
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: abnormal subcellular component
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular physical quality phenotype where the amount, distribution, composition, or morphology of a microbial cell part is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered subcellular component phenotype

Axiom
database_cross_reference: FYPO:0007751
annotated target: abnormal subcellular component
annotated source: altered subcellular component phenotype
annotated property: has_narrow_synonym

altered cytoskeleton
type: Class
subclass of: altered subcellular component phenotype
creation date: 2018-01-10T17:50:16Z
definition: A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control.
id: OMP:0007752
has_narrow_synonym: abnormal cytoskeleton
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular physical quality phenotype in which the amount, distribution, or morphology of all or part of the cytoskeleton is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cytoskeleton

Axiom
database_cross_reference: FYPO:0002397
annotated target: abnormal cytoskeleton
annotated source: altered cytoskeleton
annotated property: has_narrow_synonym

altered actin cytoskeleton
type: Class
subclass of: altered cytoskeleton
creation date: 2018-01-10T17:57:03Z
definition: A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
id: OMP:0007753
has_narrow_synonym: abnormal actin cytoskeleton
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0005665
annotated target: abnormal actin cytoskeleton
annotated source: altered actin cytoskeleton
annotated property: has_narrow_synonym

Axiom
annotated target: A cellular physical phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered actin cytoskeleton

cytoskeleton phenotype
type: Class
subclass of: subcellular component phenotype
creation date: 2018-01-10T18:39:44Z
definition: A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell.
id: OMP:0007754
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular physical quality phenotype relating to the amount, distribution, composition, or morphology of the cytoskeleton of a microbial cell.
database_cross_reference: OMP:das
annotated property: definition
annotated source: cytoskeleton phenotype

altered actin cytoskeleton during vegetative growth
type: Class
subclass of: altered actin cytoskeleton
creation date: 2018-01-10T18:48:38Z
definition: A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
id: OMP:0007755
has_narrow_synonym: abnormal actin cytoskeleton during vegetative growth
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0002398
annotated target: abnormal actin cytoskeleton during vegetative growth
annotated source: altered actin cytoskeleton during vegetative growth
annotated property: has_narrow_synonym

Axiom
annotated target: A cellular physical phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered actin cytoskeleton during vegetative growth

stubby vegetative cell
type: Class
subclass of: altered vegetative cell morphology
creation date: 2018-01-20T00:04:25Z
definition: An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control.
id: OMP:0007756
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell morphology phenotype observed in the vegetative growth phase of the life cycle in which the cell diameter is larger and the cell length is shorter than the designated control.
database_cross_reference: FYPO:0000024
database_cross_reference: OMP:das
annotated property: definition
annotated source: stubby vegetative cell

more rounded vegetative cell
type: Class
subclass of: more rounded cell shape
subclass of: altered vegetative cell shape
creation date: 2018-01-20T00:23:41Z
definition: An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells.
id: OMP:0007757
has_obo_namespace: microbial_phenotype
has_exact_synonym: more spherical vegetative cell
created by: siegele
has_narrow_synonym: spheroid vegetative cell

Axiom
database_cross_reference: FYPO:0000021
annotated target: spheroid vegetative cell
annotated source: more rounded vegetative cell
annotated property: has_narrow_synonym

Axiom
annotated target: An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell's shape is more spherical than that of a designated control. In more rounded cells, there is much less difference between the long and short axes of the cell than in the designated control cells.
database_cross_reference: OMP:das
annotated property: definition
annotated source: more rounded vegetative cell

actin cytoskeleton phenotype
type: Class
subclass of: cytoskeleton phenotype
creation date: 2018-02-24T23:27:37Z
definition: A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell.
id: OMP:0007758
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the actin cytoskeleton of a microbial cell.
database_cross_reference: OMP:das
annotated property: definition
annotated source: actin cytoskeleton phenotype

microtubule cytoskeleton phenotype
type: Class
subclass of: cytoskeleton phenotype
creation date: 2018-02-24T23:27:37Z
definition: A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell.
id: OMP:0007759
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A subcellular component phenotype relating to the amount, distribution, composition, or morphology of the microtubule cytoskeleton of a microbial cell.
database_cross_reference: OMP:das
annotated property: definition
annotated source: microtubule cytoskeleton phenotype

altered actin cytoskeleton
type: Class
subclass of: actin cytoskeleton phenotype
creation date: 2018-02-24T23:35:18Z
definition: An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
id: OMP:0007760
has_narrow_synonym: abnormal actin cytoskeleton
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An actin cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the actin cytoskeleton is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered actin cytoskeleton

Axiom
database_cross_reference: FYPO:0005665
annotated target: abnormal actin cytoskeleton
annotated source: altered actin cytoskeleton
annotated property: has_narrow_synonym

altered microtubule cytoskeleton
type: Class
subclass of: microtubule cytoskeleton phenotype
creation date: 2018-02-24T23:37:57Z
definition: A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control.
id: OMP:0007761
has_narrow_synonym: abnormal microtubule cytoskeleton
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0002399
annotated target: abnormal microtubule cytoskeleton
annotated source: altered microtubule cytoskeleton
annotated property: has_narrow_synonym

Axiom
annotated target: A microtubule cytoskeleton phenotype where the amount, distribution, or morphology of all or part of the microtubule cytoskeleton is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered microtubule cytoskeleton

presence of microtubule cytoskeleton
type: Class
subclass of: microtubule cytoskeleton phenotype
creation date: 2018-02-24T23:40:45Z
definition: A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton.
id: OMP:0007762
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microtubule cytoskeleton phenotype where a microbial cell or cells exhibit a microtubule cytoskeleton.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of microtubule cytoskeleton

absence of microtubule cytoskeleton
type: Class
subclass of: microtubule cytoskeleton phenotype
creation date: 2018-02-24T23:40:45Z
definition: A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton.
id: OMP:0007763
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microtubule cytoskeleton phenotype where a microbial cell or cells lack a microtubule cytoskeleton.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of microtubule cytoskeleton

altered microtubule cytoskeleton morphology
type: Class
subclass of: microtubule cytoskeleton phenotype
creation date: 2018-02-24T23:40:45Z
definition: A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control.
id: OMP:0007764
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microtubule cytoskeleton morphology phenotype where the size, shape, or structure of the microtubule cytoskeleton is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered microtubule cytoskeleton morphology

altered actin cortical patch localization
type: Class
subclass of: altered cellular physical quality phenotype during vegetative growth
creation date: 2018-02-24T23:59:02Z
definition: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control.
id: OMP:0007765
has_narrow_synonym: abnormal actin cortical patch localization
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch localization is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered actin cortical patch localization

Axiom
database_cross_reference: FYPO:0000190
annotated target: abnormal actin cortical patch localization
annotated source: altered actin cortical patch localization
annotated property: has_narrow_synonym

subcellular component phenotype during vegetative growth
type: Class
subclass of: cellular physical quality phenotype during vegetative growth
creation date: 2018-03-13T00:37:46Z
definition: A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle.
id: OMP:0007766
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A physical cellular phenotype affecting the amount, distribution, morphology, or other physical characteristic of a cell part when the cell is in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0001313
database_cross_reference: OMP:das
annotated property: definition
annotated source: subcellular component phenotype during vegetative growth

altered subcellular component phenotype during vegetative growth
type: Class
subclass of: subcellular component phenotype during vegetative growth
creation date: 2018-03-13T00:41:59Z
definition: A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control.
id: OMP:0007767
has_narrow_synonym: abnormal subcellular component during vegetative growth
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0001322
annotated target: abnormal subcellular component during vegetative growth
annotated source: altered subcellular component phenotype during vegetative growth
annotated property: has_narrow_synonym

Axiom
annotated target: A physical cellular phenotype observed in the vegetative growth phase of the life cycle where the amount, distribution, morphology, or other physical characteristic of a cell part is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered subcellular component phenotype during vegetative growth

altered septum during vegetative growth
type: Class
subclass of: altered subcellular component phenotype during vegetative growth
creation date: 2018-03-13T00:45:10Z
definition: A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control.
id: OMP:0007768
has_narrow_synonym: abnormal septum during vegetative growth
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0002455
annotated target: abnormal septum during vegetative growth
annotated source: altered septum during vegetative growth
annotated property: has_narrow_synonym

Axiom
annotated target: A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the position or morphology of all or part of the septum is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered septum during vegetative growth

altered septum morphology during vegetative growth
type: Class
subclass of: altered septum during vegetative growth
creation date: 2018-03-13T00:45:27Z
definition: A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control.
id: OMP:0007769
has_narrow_synonym: abnormal septum morphology during vegetative growth
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A physical cellular phenotype observed in the vegetative growth phase of the life cycle in the which the size, shape, or structure of the septum is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered septum morphology during vegetative growth

Axiom
database_cross_reference: FYPO:0002023
annotated target: abnormal septum morphology during vegetative growth
annotated source: altered septum morphology during vegetative growth
annotated property: has_narrow_synonym

multiseptate vegetative cell
type: Class
subclass of: altered subcellular component phenotype during vegetative growth
creation date: 2018-03-13T01:01:28Z
definition: An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell.
id: OMP:0007770
has_obo_namespace: microbial_phenotype
has_exact_synonym: multiseptate vegetative cell
created by: siegele

Axiom
annotated target: An altered physical cellular phenotype observed in the vegetative growth phase of the life cycle characterized by the presence of more than one septum in a cell.
database_cross_reference: FYPO:0000118
database_cross_reference: OMP:das
annotated property: definition
annotated source: multiseptate vegetative cell

Axiom
database_cross_reference: FYPO:0000118
annotated target: multiseptate vegetative cell
annotated source: multiseptate vegetative cell
annotated property: has_exact_synonym

presence of population growth at alkaline pH
type: Class
subclass of: pH effects on population growth phenotype
creation date: 2018-04-28T15:51:32Z
definition: A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
id: OMP:0007771
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of population growth at alkaline pH

altered vegetative population growth
type: Class
subclass of: altered population growth
creation date: 2018-04-07T23:03:53Z
definition: A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control.
id: OMP:0007772
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype observed in the vegetative phase of the life cycle where the rate or extent of reproduction of a microbial population is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered vegetative population growth

presence of population growth on defined medium
type: Class
subclass of: population growth on defined medium phenotype
creation date: 2018-04-28T16:17:10Z
definition: A population growth phenotype where a microbial population is able to grow on a defined medium.
id: OMP:0007773
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where a microbial population is able to grow on a defined medium.
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: presence of population growth on defined medium

population growth on defined medium phenotype
type: Class
subclass of: population growth phenotype
creation date: 2018-04-28T16:19:32Z
definition: A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium.
id: OMP:0007774
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype relating to the growth of a microbial population in the vegetative phase of the life cycle to reproduce on a defined medium.
database_cross_reference: OMP:das
annotated property: definition
annotated source: population growth on defined medium phenotype

altered population growth on defined medium
type: Class
subclass of: population growth on defined medium phenotype
creation date: 2018-04-28T16:20:12Z
definition: A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control.
id: OMP:0007775
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered population growth on defined medium

decreased population growth on defined medium
type: Class
subclass of: altered population growth on defined medium
creation date: 2018-04-28T16:22:29Z
definition: An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control.
id: OMP:0007776
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth on defined medium phenotype where the rate and/or extent of growth on defined medium is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased population growth on defined medium

abolished population growth on defined medium
type: Class
subclass of: decreased population growth on defined medium
creation date: 2018-04-28T16:23:22Z
definition: An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished.
id: OMP:0007777
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered population growth on defined medium phenotype where the rate or extent of growth on defined medium is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished population growth on defined medium

increased population growth on defined medium
type: Class
subclass of: altered population growth on defined medium
creation date: 2018-04-28T16:23:56Z
definition: A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control.
id: OMP:0007778
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth on defined medium phenotype where the rate and/or extent of growth is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased population growth on defined medium

absence of population growth on defined medium
type: Class
subclass of: population growth on defined medium phenotype
creation date: 2018-04-28T16:25:49Z
definition: A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium.
id: OMP:0007779
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth on defined medium phenotype where a microbial population cannot grow on a specified defined medium.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of population growth on defined medium

absence of microbial vegetative cell viability
type: Class
subclass of: absence of microbial cell viability
creation date: 2018-06-08T17:22:34Z
definition: A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions.
id: OMP:0007780
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell phenotype in which a microbial cell in the vegetative growth phase of the life cycle is nonviable in the specified conditions.
database_cross_reference: FYPO:0001489
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of microbial vegetative cell viability

septation following abnormal chromosome segregation during vegetative growth
type: Class
subclass of: absence of microbial vegetative cell viability
creation date: 2018-06-08T17:31:26Z
definition: A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells.
id: OMP:0007781
has_obo_namespace: microbial_phenotype
has_narrow_synonym: septation following abnormal mitotic chromosome segregation
created by: siegele

Axiom
database_cross_reference: FYPO:0000323
annotated target: septation following abnormal mitotic chromosome segregation
annotated source: septation following abnormal chromosome segregation during vegetative growth
annotated property: has_narrow_synonym

Axiom
annotated target: A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal chromosome segregation and gives rise to nonviable daughter cells.
database_cross_reference: FYPO:0000323
database_cross_reference: OMP:das
annotated property: definition
annotated source: septation following abnormal chromosome segregation during vegetative growth

cut cell
type: Class
subclass of: septation following abnormal chromosome segregation during vegetative growth
creation date: 2018-06-08T17:41:11Z
definition: A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells.
id: OMP:0007782
has_exact_synonym: cut
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A nonviable cell phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation in the absence of nuclear division, such that the septum physically divides the nucleus into two parts and produces nonviable daughter cells.
database_cross_reference: FYPO:0003165
database_cross_reference: OMP:das
annotated property: definition
annotated source: cut cell

Axiom
database_cross_reference: FYPO:0003165
annotated target: cut
annotated source: cut cell
annotated property: has_exact_synonym

cellular process phenotype during vegetative growth
type: Class
subclass of: cellular process phenotype
creation date: 2018-06-09T19:27:13Z
definition: A phenotype that affects a cellular process in the vegetative phase of the life cycle.
id: OMP:0007783
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: cellular process phenotype during vegetative growth
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0001331
annotated target: cellular process phenotype during vegetative growth
annotated source: cellular process phenotype during vegetative growth
annotated property: has_exact_synonym

Axiom
annotated target: A phenotype that affects a cellular process in the vegetative phase of the life cycle.
database_cross_reference: FYPO:0001331
database_cross_reference: OMP:das
annotated property: definition
annotated source: cellular process phenotype during vegetative growth

altered cellular process during vegetative growth
type: Class
subclass of: cellular process phenotype during vegetative growth
creation date: 2018-06-09T19:29:28Z
definition: A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control.
id: OMP:0007784
has_narrow_synonym: abnormal cellular process during vegetative growth
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype where the rate, frequency, timing, or extent of a specified cellular process during vegetative growth is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cellular process during vegetative growth

Axiom
database_cross_reference: FYPO:0001362
annotated target: abnormal cellular process during vegetative growth
annotated source: altered cellular process during vegetative growth
annotated property: has_narrow_synonym

presence of cellular process during vegetative growth
type: Class
subclass of: cellular process phenotype during vegetative growth
creation date: 2018-06-09T19:29:58Z
id: OMP:0007785
has_obo_namespace: microbial_phenotype
created by: siegele

absence of cellular process during vegetative growth
type: Class
subclass of: cellular process phenotype during vegetative growth
creation date: 2018-06-09T19:30:25Z
definition: A microbial phenotype where a microbe does not carry out the specified cellular process.
id: OMP:0007786
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microbial phenotype where a microbe does not carry out the specified cellular process.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of cellular process during vegetative growth

presence of cell separation after cell division during vegetative growth
type: Class
subclass of: presence of cellular process during vegetative growth
creation date: 2018-06-09T19:32:40Z
id: OMP:0007787
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell separation after cell division during vegetative growth
type: Class
subclass of: altered cellular process during vegetative growth
creation date: 2018-06-09T19:33:12Z
definition: A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control.
id: OMP:0007788
has_narrow_synonym: abnormal cell separation after cytokinesis
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype observed during vegetative growth where the rate, frequency, timing, or extent of cell separation after cell division is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell separation after cell division during vegetative growth

Axiom
database_cross_reference: FYPO:0000164
annotated target: abnormal cell separation after cytokinesis
annotated source: altered cell separation after cell division during vegetative growth
annotated property: has_narrow_synonym

abolished cell separation after cell division during vegetative growth
type: Class
subclass of: decreased frequency of cell separation after cell division during vegetative growth
subclass of: absence of cell separation after cell division during vegetative growth
creation date: 2018-06-09T19:52:36Z
definition: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished.
id: OMP:0007789
has_related_synonym: abolished cell separation after cytokinesis
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cell division is abolished.
database_cross_reference: FYPO:0006557
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished cell separation after cell division during vegetative growth

Axiom
database_cross_reference: FYPO:0006557
annotated target: abolished cell separation after cytokinesis
annotated source: abolished cell separation after cell division during vegetative growth
annotated property: has_related_synonym

decreased frequency of cell separation after cell division during vegetative growth
type: Class
subclass of: altered cell separation after cell division during vegetative growth
creation date: 2018-06-09T20:00:05Z
definition: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells.
id: OMP:0007790
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the frequency of cell separation after cell division is decreased and results in the formation of chains of cells.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased frequency of cell separation after cell division during vegetative growth

dispersed actin cortical patch localization
type: Class
subclass of: altered actin cortical patch localization
creation date: 2018-06-10T01:59:18Z
definition: A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends.
id: OMP:0007791
has_exact_synonym: dispersed actin cortical patch localization
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular physical quality phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized throughout the cell cortex rather than concentrated at the cell ends.
database_cross_reference: FYPO:0002021
database_cross_reference: OMP:das
annotated property: definition
annotated source: dispersed actin cortical patch localization

Axiom
database_cross_reference: FYPO:0002021
annotated target: dispersed actin cortical patch localization
annotated source: dispersed actin cortical patch localization
annotated property: has_exact_synonym

absence of cell separation after cell division during vegetative growth
type: Class
subclass of: absence of cellular process during vegetative growth
creation date: 2018-06-10T02:08:44Z
definition: A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division.
id: OMP:0007792
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cellular process phenotype observed during the vegetative growth phase of the life cycle where cells do not separate after cell division.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of cell separation after cell division during vegetative growth

presence of vegetative cell population growth
type: Class
subclass of: presence of population growth
creation date: 2018-06-10T21:18:22Z
definition: A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number.
id: OMP:0007793
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population phenotype where a population of microbial cells in the vegetative growth phase of the life cycle increases in number.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of vegetative cell population growth

cell population growth phenotype
type: Class
subclass of: population growth phenotype
subclass of: cell population phenotype
creation date: 2018-06-10T23:16:48Z
definition: A cell population phenotype that affects the rate or extent of growth of a population of microbial cells.
id: OMP:0007794
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_related_synonym: cell population growth phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
database_cross_reference: FYPO:0000139
annotated target: cell population growth phenotype
annotated source: cell population growth phenotype
annotated property: has_related_synonym

Axiom
annotated target: A cell population phenotype that affects the rate or extent of growth of a population of microbial cells.
database_cross_reference: FYPO:0000139
database_cross_reference: OMP:das
annotated property: definition
annotated source: cell population growth phenotype

vegetative cell population growth phenotype
type: Class
subclass of: cell population growth phenotype
creation date: 2018-06-11T00:02:40Z
definition: A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle.
id: OMP:0007795
has_obo_namespace: microbial_phenotype
created by: siegele
has_related_synonym: vegetative cell population growth phenotype

Axiom
annotated target: A cell population phenotype that affects the rate or extent cell population growth in the vegetative growth phase of the life cycle.
database_cross_reference: FYPO:0000139
database_cross_reference: OMP:das
annotated property: definition
annotated source: vegetative cell population growth phenotype

Axiom
database_cross_reference: FYPO:0000139
annotated target: vegetative cell population growth phenotype
annotated source: vegetative cell population growth phenotype
annotated property: has_related_synonym

presence of vegetative cell population growth
type: Class
subclass of: vegetative cell population growth phenotype
creation date: 2018-06-12T00:51:39Z
id: OMP:0007796
has_obo_namespace: microbial_phenotype
created by: siegele

absence of vegetative cell population growth
type: Class
subclass of: vegetative cell population growth phenotype
creation date: 2018-06-12T00:51:39Z
id: OMP:0007797
has_obo_namespace: microbial_phenotype
created by: siegele

altered vegetative cell population growth
type: Class
subclass of: vegetative cell population growth phenotype
subclass of: altered cell population growth
creation date: 2018-06-12T00:51:39Z
id: OMP:0007798
has_obo_namespace: microbial_phenotype
created by: siegele

decreased vegetative cell population growth at high temperature
type: Class
subclass of: altered vegetative cell population growth
creation date: 2018-06-12T00:51:53Z
definition: A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control.
id: OMP:0007799
has_narrow_synonym: decreased vegetative cell population growth at high temperature
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0000082
annotated target: decreased vegetative cell population growth at high temperature
annotated source: decreased vegetative cell population growth at high temperature
annotated property: has_narrow_synonym

Axiom
annotated target: A cell population phenotype observed in the vegetative growth phase of the life cycle where the rate and/or extent of growth of a population of microbial cells at a temperature above the optimal growth temperature of the microbe is decreased relative to a designated control.
database_cross_reference: FYPO:0000082
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased vegetative cell population growth at high temperature

polyether antimicrobial resistance phenotype
type: Class
creation date: 2018-06-18T03:07:12Z
term replaced by: OMP:0000274
id: OMP:0007800
comment: This term and its children were deemed to be too granular. Instead, use one of the children of OMP:0000274 antimicrobial agent resistance phenotype and enter database identifier for A22 in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true
in_subset: qc do not manually annotate

altered vegetative cell population growth rate
type: Class
subclass of: altered population growth rate
creation date: 2018-06-19T15:14:26Z
id: OMP:0007801
created by: dsiegele
has_obo_namespace: microbial_phenotype

increased vegetative cell population growth rate
type: Class
subclass of: altered vegetative cell population growth rate
creation date: 2018-06-19T15:15:58Z
id: OMP:0007802
created by: dsiegele
has_obo_namespace: microbial_phenotype

decreased vegetative cell population growth rate
type: Class
subclass of: altered vegetative cell population growth rate
creation date: 2018-06-19T15:15:58Z
id: OMP:0007803
created by: dsiegele
has_obo_namespace: microbial_phenotype

increased vegetative cell population viability
type: Class
subclass of: increased cell population viability
subclass of: altered vegetative cell population viability
creation date: 2018-06-19T15:45:43Z
definition: An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control.
id: OMP:0007804
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell population viability phenotype observed in the vegetative phase of the life cycle where the proportion of cells that survive a specified treatment is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased vegetative cell population viability

increased cell population viability upon starvation
type: Class
subclass of: increased vegetative cell population viability
creation date: 2018-06-19T15:46:20Z
definition: An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control.
id: OMP:0007805
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell population viability phenotype where the proportion of cells that survive starvation for one or more essential nutrients is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased cell population viability upon starvation

increased cell population viability upon nitrogen starvation
type: Class
subclass of: increased cell population viability upon starvation
creation date: 2018-06-19T15:48:36Z
definition: An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control.
id: OMP:0007806
created by: dsiegele
has_exact_synonym: increased viability upon nitrogen starvation
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: FYPO:0004344
annotated target: increased viability upon nitrogen starvation
annotated source: increased cell population viability upon nitrogen starvation
annotated property: has_exact_synonym

Axiom
annotated target: An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is increased relative to a designated control.
database_cross_reference: FYPO:0004344
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased cell population viability upon nitrogen starvation

decreased cell population viablity upon starvation
type: Class
subclass of: decreased cell population viability
creation date: 2018-06-19T15:53:27Z
id: OMP:0007807
created by: dsiegele
has_obo_namespace: microbial_phenotype

decreased cell population viability upon nitrogen starvation
type: Class
subclass of: decreased cell population viablity upon starvation
creation date: 2018-06-19T15:53:53Z
definition: An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control.
id: OMP:0007808
created by: dsiegele
has_exact_synonym: loss of viability upon nitrogen starvation
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cell population viability phenotype where the proportion of cells that survive nitrogen starvation is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cell population viability upon nitrogen starvation

Axiom
database_cross_reference: FYPO:1178
annotated target: loss of viability upon nitrogen starvation
annotated source: decreased cell population viability upon nitrogen starvation
annotated property: has_exact_synonym

altered cell population growth
type: Class
subclass of: altered cell population phenotype
subclass of: altered population growth
subclass of: cell population growth phenotype
creation date: 2018-06-19T16:14:57Z
definition: A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control.
id: OMP:0007809
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cell population growth phenotype where the rate or extent of growth of a population of microbial cells is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell population growth

cell population growth rate phenotype
type: Class
subclass of: cell population growth phenotype
creation date: 2018-06-19T16:39:59Z
id: OMP:0007810
created by: dsiegele
has_obo_namespace: microbial_phenotype

cellular pigment accumulation phenotype
type: Class
subclass of: cellular process phenotype
creation date: 2018-06-20T14:50:41Z
definition: A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell.
id: OMP:0007811
has_exact_synonym: cellular pigment accumulation phenotype
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
database_cross_reference: FYPO:0000739
annotated target: cellular pigment accumulation phenotype
annotated source: cellular pigment accumulation phenotype
annotated property: has_exact_synonym

Axiom
annotated target: A cellular process phenotype that affects the occurrence of pigment accumulation in a microbial cell.
database_cross_reference: OMP:das
annotated property: definition
annotated source: cellular pigment accumulation phenotype

presence of cellular pigment accumulation
type: Class
subclass of: cellular pigment accumulation phenotype
creation date: 2018-06-20T14:55:08Z
definition: A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism.
id: OMP:0007812
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: normal cellular pigment accumulation

Axiom
database_cross_reference: FYPO:0000740
annotated target: normal cellular pigment accumulation
annotated source: presence of cellular pigment accumulation
annotated property: has_narrow_synonym

Axiom
annotated target: A cellular process phenotype where the process of accumulating pigment occurs in a cell or cells of a microorganism.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of cellular pigment accumulation

presence of cellular pigment accumulation during vegetative growth
type: Class
subclass of: presence of cellular pigment accumulation
creation date: 2018-06-20T14:58:28Z
definition: A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment.
id: OMP:0007813
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_narrow_synonym: normal cellular pigment accumulation

Axiom
annotated target: A cellular process phenotype observed during the vegetative growth phase of the life cycle where a cell or cells of a microorganism accumulate pigment.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of cellular pigment accumulation during vegetative growth

Axiom
database_cross_reference: FYPO:0000740
annotated target: normal cellular pigment accumulation
annotated source: presence of cellular pigment accumulation during vegetative growth
annotated property: has_narrow_synonym

altered cellular pigment accumulation
type: Class
subclass of: cellular pigment accumulation phenotype
creation date: 2018-06-20T15:08:52Z
definition: A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control.
id: OMP:0007814
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cellular pigment accumulation

increased cellular pigment accumulation
type: Class
subclass of: altered cellular pigment accumulation
creation date: 2018-06-20T15:11:51Z
definition: An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
id: OMP:0007815
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased cellular pigment accumulation

increased cellular pigment accumulation
type: Class
subclass of: increased cellular pigment accumulation
creation date: 2018-06-20T15:15:14Z
definition: An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
id: OMP:0007816
created by: dsiegele
has_exact_synonym: increased cellular pigment accumulation
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased cellular pigment accumulation

Axiom
database_cross_reference: FYPO:0000741
annotated target: increased cellular pigment accumulation
annotated source: increased cellular pigment accumulation
annotated property: has_exact_synonym

decreased cellular pigment accumulation
type: Class
subclass of: altered cellular pigment accumulation
creation date: 2018-06-20T15:20:02Z
definition: An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
id: OMP:0007817
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cellular pigment accumulation phenotype where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cellular pigment accumulation

decreased cellular pigment accumulation during vegetative growth
type: Class
subclass of: decreased cellular pigment accumulation
creation date: 2018-06-20T15:20:42Z
definition: An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
id: OMP:0007818
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered cellular pigment accumulation phenotype observed in the vegetative growth phase of the life cycle where the rate, extent, or timing of the process of pigment accumulation by a microbial cell or cells is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cellular pigment accumulation during vegetative growth

absence of cellular pigment accumulation
type: Class
subclass of: cellular pigment accumulation phenotype
creation date: 2018-06-20T15:29:44Z
definition: A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism.
id: OMP:0007819
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A cellular process phenotype where the process of accumulating pigment doesn't occur in a cell or cells of a microorganism.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of cellular pigment accumulation

absence of cellular pigment accumulation during vegetative growth
type: Class
subclass of: absence of cellular pigment accumulation
creation date: 2018-06-20T15:31:24Z
definition: A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism.
id: OMP:0007820
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A phenotype observed in the vegetative growth phase of the life cycle where the process of accumulating pigment does not occur in a cell or cells of a microorganism.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of cellular pigment accumulation during vegetative growth

nitrofuran resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-06-21T22:05:44Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group.
id: OMP:0007821
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: difurazone (Nitrovin) resistance phenotype
has_obo_namespace: microbial_phenotype
has_exact_synonym: nitrofuran sensitivity phenotype
has_narrow_synonym: nitrofurantoin resistance phenotype
has_narrow_synonym: nitrofurazone resistance phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:71415
annotated target: nitrofurantoin resistance phenotype
annotated source: nitrofuran resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity to a nitrofuran compound. Nitrofurans are members of the class of furans in which the furan ring is substituted by a nitro group.
database_cross_reference: CHEBI:87230
database_cross_reference: OMP:das
annotated property: definition
annotated source: nitrofuran resistance phenotype

Axiom
database_cross_reference: CHEBI:44368
annotated target: nitrofurazone resistance phenotype
annotated source: nitrofuran resistance phenotype
annotated property: has_narrow_synonym

resistant to nitrofuran
type: Class
subclass of: nitrofuran resistance phenotype
creation date: 2018-06-21T22:07:43Z
definition: A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds.
id: OMP:0007822
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A nitrofuran resistance phenotype where a microbe is resistant to one or more nitrofuran compounds.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistant to nitrofuran

not resistant to nitrofuran
type: Class
subclass of: nitrofuran resistance phenotype
creation date: 2018-06-21T22:07:43Z
definition: A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds.
id: OMP:0007823
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A nitrofuran resistance phenotype where a microbe is sensitive to one or more nitrofuran compounds.
database_cross_reference: OMP:das
annotated property: definition
annotated source: not resistant to nitrofuran

altered nitrofuran resistance
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: nitrofuran resistance phenotype
creation date: 2018-06-21T22:07:43Z
definition: A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control.
id: OMP:0007824
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A nitrofuran resistance phenotype where resistance to a nitrofuran compound is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered nitrofuran resistance

decreased resistance to nitrofuran
type: Class
subclass of: altered nitrofuran resistance
creation date: 2018-06-21T22:14:44Z
definition: An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control.
id: OMP:0007825
has_exact_synonym: increased sensitivity to nitrofuran
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased resistance to nitrofuran

abolished resistance to nitrofuran
type: Class
subclass of: not resistant to nitrofuran
subclass of: decreased resistance to nitrofuran
creation date: 2018-06-21T22:15:06Z
definition: An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished.
id: OMP:0007826
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished resistance to nitrofuran

increased resistance to nitrofuran
type: Class
subclass of: altered nitrofuran resistance
creation date: 2018-06-21T22:15:28Z
definition: An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control.
id: OMP:0007827
has_exact_synonym: decreased sensitivity to nitrofuran
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered nitrofuran resistance phenotype where resistance to a nitrofuran compound is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased resistance to nitrofuran

sulfonamide antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-06-22T00:39:30Z
definition: An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group.
id: OMP:0007828
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
has_narrow_synonym: sulfamethizole resistance phenotype
has_narrow_synonym: sulfamonomethoxine resistance phenotype
has_exact_synonym: sulfonamide sensitivity phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: An antimicrobial agent resistance phenotype related to resistance or sensitivity of a microbe to one or more sulfonamide compounds. The sulfonamide function group is -S(=O)2-NH2, a sulfonyl group connected to an amine group.
database_cross_reference: CHEBI:35358
database_cross_reference: OMP:das
annotated property: definition
annotated source: sulfonamide antimicrobial agent resistance phenotype

Axiom
database_cross_reference: CHEBI:9331
annotated target: sulfamethizole resistance phenotype
annotated source: sulfonamide antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:32164
annotated target: sulfamonomethoxine resistance phenotype
annotated source: sulfonamide antimicrobial agent resistance phenotype
annotated property: has_narrow_synonym

resistant to sulfonamide antimicrobial agent
type: Class
subclass of: sulfonamide antimicrobial agent resistance phenotype
creation date: 2018-06-22T00:47:21Z
definition: A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent.
id: OMP:0007829
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe is not affected by the presence of a sulfonamide antimicrobial agent.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistant to sulfonamide antimicrobial agent

not resistant to a sulfonamide antimicrobial agent
type: Class
subclass of: sulfonamide antimicrobial agent resistance phenotype
creation date: 2018-06-22T00:47:21Z
definition: A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent.
id: OMP:0007830
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfonamide antimicrobial agent resistance phenotype where growth and reproduction of a microbe does not occur in the presence of a sulfonamide antimicrobial agent.
database_cross_reference: OMP:das
annotated property: definition
annotated source: not resistant to a sulfonamide antimicrobial agent

altered resistance to a sulfonamide antimicrobial agent
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: sulfonamide antimicrobial agent resistance phenotype
creation date: 2018-06-22T00:47:21Z
definition: A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control.
id: OMP:0007831
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A sulfonamide antimicrobial agent resistance phenotype where the ability of microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered resistance to a sulfonamide antimicrobial agent

increased resistance to sulfonamide
type: Class
subclass of: altered resistance to a sulfonamide antimicrobial agent
creation date: 2018-06-22T00:47:21Z
definition: An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control.
id: OMP:0007832
has_exact_synonym: decreased sensitivity to sulfonamide antimicrobial agent
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased resistance to sulfonamide

decreased resistance to sulfonamde
type: Class
subclass of: altered resistance to a sulfonamide antimicrobial agent
creation date: 2018-06-22T00:47:21Z
definition: An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control.
id: OMP:0007833
has_exact_synonym: increased sensitivity to sulfonamide
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered sulfonamide antimicrobial agent resistance phenotype where resistance of a microbe to a sulfonamide antimicrobial agent is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased resistance to sulfonamde

abolished resistance to sulfonamide
type: Class
subclass of: not resistant to a sulfonamide antimicrobial agent
subclass of: decreased resistance to sulfonamde
creation date: 2018-06-22T00:47:21Z
definition: A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished.
id: OMP:0007834
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased sulfonamide antimicrobial resistance phenotype where the ability of a microbe to grow and reproduce in the presence of a sulfonamide antimicrobial agent is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished resistance to sulfonamide

spore viability phenotype
type: Class
subclass of: microbial cell viability phenotype
creation date: 2018-06-25T10:35:25Z
definition: A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions.
id: OMP:0007835
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not manually annotate

Axiom
annotated target: A cell viability phenotype related to the ability of a microbial spore to survive, germinate, and go on to grow and reproduce under the specified conditions.
database_cross_reference: OMP:das
annotated property: definition
annotated source: spore viability phenotype

viable spore
type: Class
subclass of: presence of microbial cell viability
subclass of: spore viability phenotype
creation date: 2018-06-25T10:37:49Z
definition: A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions.
id: OMP:0007836
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell viability phenotype in which a microbial spore is able to survive and go on to grow and reproduce under the specified conditions.
database_cross_reference: OMP:das
annotated property: definition
annotated source: viable spore

nonviable spore
type: Class
subclass of: spore viability phenotype
creation date: 2018-06-25T10:39:27Z
definition: A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate.
id: OMP:0007837
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell viability phenotype in which a microbial spore is unable to survive under the specified conditions. A nonviable spore does not germinate.
database_cross_reference: FYPO:0002151
database_cross_reference: OMP:das
annotated property: definition
annotated source: nonviable spore

altered spore viability
type: Class
subclass of: altered microbial cell viability
subclass of: spore viability phenotype
creation date: 2018-06-25T16:17:02Z
definition: A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control.
id: OMP:0007838
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered spore viability

decreased spore viability
type: Class
subclass of: altered spore viability
creation date: 2018-06-25T16:18:49Z
definition: An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control.
id: OMP:0007839
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered spore viability phenotype where the ability of a microbial cell to survive, germinate, and go on to grow and reproduce is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased spore viability

increased spore viability
type: Class
subclass of: altered spore viability
creation date: 2018-06-25T16:18:49Z
definition: An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control.
id: OMP:0007840
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered spore viability phenotype where the ability of a microbial spore to survive, germinate, and go on to grow and reproduce is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased spore viability

increased viability of vegetative microbial cell
type: Class
subclass of: increased cell viability
subclass of: altered vegetative cell viability
creation date: 2018-06-25T17:18:58Z
definition: An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control.
id: OMP:0007841
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered microbial cell viability phenotype observed in the vegetative phase of the growth cycle where the viability of a vegetative microbial cell is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased viability of vegetative microbial cell

presence of germ tube
type: Class
subclass of: germ tube morphology phenotype
creation date: 2018-06-27T00:14:46Z
definition: A cell morphology phenotype where a germinating microbial spore has a germ tube.
id: OMP:0007842
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell morphology phenotype where a germinating microbial spore has a germ tube.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of germ tube

absence of germ tube
type: Class
subclass of: germ tube morphology phenotype
creation date: 2018-06-27T00:14:46Z
definition: A cell morphology phenotype where a germinating microbial spore lacks a germ tube.
id: OMP:0007843
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell morphology phenotype where a germinating microbial spore lacks a germ tube.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of germ tube

curved germ tube morphology
type: Class
subclass of: altered germ tube morphology
creation date: 2018-06-27T00:27:16Z
definition: An altered germ tube morphology phenotype where the germ tube is curved along its long axis.
id: OMP:0007844
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered germ tube morphology phenotype where the germ tube is curved along its long axis.
database_cross_reference: OMP:das
annotated property: definition
annotated source: curved germ tube morphology

unseptated germ tube
type: Class
subclass of: altered germ tube morphology
creation date: 2018-06-27T20:58:20Z
definition: An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell.
id: OMP:0007845
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered germ tube morphology phenotype where the germ tube does not contain any septa and does not go on to form a viable dividing cell.
database_cross_reference: FYPO:0000311
database_cross_reference: OMP:das
annotated property: definition
annotated source: unseptated germ tube

organic cyclic antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-06-30T21:27:43Z
definition: An antimicrobial agent resistance phenotype
id: OMP:0007846
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An antimicrobial agent resistance phenotype
database_cross_reference: CHEBI:33832
database_cross_reference: OMP:das
annotated property: definition
annotated source: organic cyclic antimicrobial agent resistance phenotype

fosfomycin resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-07-24T19:34:05Z
definition: An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin.
id: OMP:0007847
has_narrow_synonym: fosfomycin resistance phenotype
has_narrow_synonym: fosfomycin sensitivity phenotype
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosfomycin.
database_cross_reference: CHEBI:26069
database_cross_reference: OMP:das
annotated property: definition
annotated source: fosfomycin resistance phenotype

Axiom
database_cross_reference: CHEBI:28915
annotated target: fosfomycin resistance phenotype
annotated source: fosfomycin resistance phenotype
annotated property: has_narrow_synonym

phenolic chemical resistance phenotype
type: Class
subclass of: chemical resistance phenotype
creation date: 2018-07-26T17:28:29Z
definition: A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
id: OMP:0007848
has_narrow_synonym: epigallocatechin gallate (EGCG) chemical resistance phenotype
has_obo_namespace: microbial_phenotype
has_narrow_synonym: phenol red chemical resistance phenotype
has_narrow_synonym: rose bengal chemical resistance phenotype
created by: siegele

Axiom
annotated target: A chemical resistance phenotype relating to resistance or sensitivity of a microbe to a member or members of the class phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
database_cross_reference: CHEBI:33853
database_cross_reference: OMP:das
annotated property: definition
annotated source: phenolic chemical resistance phenotype

Axiom
database_cross_reference: CHEBI::4806
annotated target: epigallocatechin gallate (EGCG) chemical resistance phenotype
annotated source: phenolic chemical resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:31991
annotated target: phenol red chemical resistance phenotype
annotated source: phenolic chemical resistance phenotype
annotated property: has_narrow_synonym

Axiom
database_cross_reference: CHEBI:52261
annotated target: rose bengal chemical resistance phenotype
annotated source: phenolic chemical resistance phenotype
annotated property: has_narrow_synonym

absence of organic carbon source utilization
type: Class
subclass of: carbon source utilization phenotype
creation date: 2018-07-27T16:15:15Z
id: OMP:0007849
created by: dsiegele
has_obo_namespace: microbial_phenotype

absence of inorganic carbon source utilization
type: Class
subclass of: carbon source utilization phenotype
creation date: 2018-07-27T16:15:15Z
id: OMP:0007850
created by: dsiegele
has_obo_namespace: microbial_phenotype

mixotrophic energy metabolism
type: Class
subclass of: energy metabolism phenotype
creation date: 2018-07-27T16:29:26Z
definition: A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth.
id: OMP:0007851
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_broad_synonym: mixotrophy

Axiom
annotated target: A metabolic phenotype where an organism can switch between using different sources of energy instead of having a single trophic mode. For example, an organism may switch between phototrophic and chemoorganotrophic growth.
database_cross_reference: OMP:das
annotated property: definition
annotated source: mixotrophic energy metabolism

increased inorganic carbon source utilization
type: Class
subclass of: altered carbon source utilization
creation date: 2018-07-27T16:33:19Z
definition: An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control.
id: OMP:0007852
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased inorganic carbon source utilization

decreased inorganic carbon source utilization
type: Class
subclass of: altered carbon source utilization
creation date: 2018-07-27T16:33:19Z
definition: An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control.
id: OMP:0007853
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered carbon source utilization phenotype where the ability to use an inorganic carbon source is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased inorganic carbon source utilization

abolished inorganic carbon source utilization
type: Class
subclass of: absence of inorganic carbon source utilization
subclass of: decreased inorganic carbon source utilization
creation date: 2018-07-27T16:33:19Z
definition: A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished.
id: OMP:0007854
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased inorganic carbon source utilization phenotype where the ability to use an inorganic carbon source is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished inorganic carbon source utilization

fosmidomycin antimicrobial agent resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-07-27T17:59:33Z
definition: An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin.
id: OMP:0007855
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to fosmidomycin.
database_cross_reference: CHEBI:443725
database_cross_reference: OMP:das
annotated property: definition
annotated source: fosmidomycin antimicrobial agent resistance phenotype

presence of fosfomycin resistance
type: Class
subclass of: fosfomycin resistance phenotype
creation date: 2018-07-27T18:05:19Z
definition: An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin.
id: OMP:0007856
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An antimicrobial resistance phenotype where a microbe has the ability to grow and reproduce in the presence of fosfomycin.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of fosfomycin resistance

absence of fosfomycin resistance
type: Class
subclass of: fosfomycin resistance phenotype
creation date: 2018-07-27T18:05:19Z
definition: An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin.
id: OMP:0007857
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An antimicrobial resistance phenotype where a microbe cannot grow and reproduce in the presence of fosfomycin.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of fosfomycin resistance

altered fosfomycin resistance
type: Class
subclass of: altered resistance to an antimicrobial agent
subclass of: fosfomycin resistance phenotype
creation date: 2018-07-27T18:05:19Z
definition: A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control.
id: OMP:0007858
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered fosfomycin resistance

increased resistance to fosfomycin
type: Class
subclass of: altered fosfomycin resistance
creation date: 2018-07-27T18:05:19Z
definition: An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control.
id: OMP:0007859
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased resistance to fosfomycin

decreased resistance to fosfomycin
type: Class
subclass of: altered fosfomycin resistance
creation date: 2018-07-27T18:05:19Z
definition: An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control.
id: OMP:0007860
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased resistance to fosfomycin

abolished fosfomycin resistance
type: Class
subclass of: absence of fosfomycin resistance
subclass of: decreased resistance to fosfomycin
creation date: 2018-07-27T18:05:19Z
definition: A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished.
id: OMP:0007861
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased fosfomycin resistance phenotype where the ability of a microbe to grow and reproduce in the presence of fosfomycin is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished fosfomycin resistance

bicyclomycin antimicrobial agent resistance phenotype
type: Class
creation date: 2018-07-29T21:34:15Z
term replaced by: OMP:0000274
id: OMP:0007862
comment: The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

presence of resistance to bicyclomycin
type: Class
creation date: 2018-07-29T21:34:15Z
id: OMP:0007863
term replaced by: OMP:0007876
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

absence of resistance to bicyclomycin
type: Class
creation date: 2018-07-29T21:34:15Z
id: OMP:0007864
term replaced by: OMP:0007877
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

altered resistance to bicyclomycin
type: Class
creation date: 2018-07-29T21:34:15Z
term replaced by: OMP:0007134
id: OMP:0007865
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

decreased resistance to bicyclomycin
type: Class
creation date: 2018-07-29T21:34:15Z
id: OMP:0007866
term replaced by: OMP:0007879
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

abolished resistance to bicyclomycin
type: Class
creation date: 2018-07-29T21:34:15Z
id: OMP:0007867
term replaced by: OMP:0007880
comment: The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

increased resistance to bicyclomycin
type: Class
creation date: 2018-07-29T21:34:15Z
id: OMP:0007868
term replaced by: OMP:0007878
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

A22 antimicrobial agent resistance phenotype
type: Class
creation date: 2018-07-29T22:21:01Z
term replaced by: OMP:0000274
id: OMP:0007869
comment: The original term and its children were deemed to be too granular and replaced with OMP:0000274 ! antimicrobial agent resistance phenotype and its child terms, which are listed below. When using one of these terms for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field. OMP:0007876 resistant to an antimicrobial agent OMP:0007877 not resistant to an antimicrobial agent OMP:0007134 altered resistance to an antimicrobial agent OMP:0007878 increased resistance to an antimicrobial agent OMP:000 7879 decreased resistance to an antimicrobial agent OMP:0007880 abolished resistance to an antimicrobial agent
has_related_synonym: amino[sulfanyl]methaniminiumchloride antimicrobial agent resistance phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

presence of resistance to A22
type: Class
creation date: 2018-07-29T22:22:16Z
id: OMP:0007870
term replaced by: OMP:0007876
comment: This term and was deemed to be too granular. In its place, use OMP:0007876 resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

absence of resistance to A22
type: Class
creation date: 2018-07-29T22:22:16Z
id: OMP:0007871
term replaced by: OMP:0007877
comment: This term was deemed to be too granular. In its place, use OMP:0007877 not resistant to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

increased resistance to A22
type: Class
creation date: 2018-07-29T22:22:16Z
id: OMP:0007872
term replaced by: OMP:0007878
comment: This term and was deemed to be too granular. Instead, use OMP:0007878 increased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

decreased resistance to A22
type: Class
creation date: 2018-07-29T22:22:16Z
id: OMP:0007873
term replaced by: OMP:0007879
comment: This term and was deemed to be too granular. In its place, use OMP:000 7879 decreased resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

abolished resistance to A22
type: Class
creation date: 2018-07-29T22:22:16Z
id: OMP:0007874
term replaced by: OMP:0007880
comment: The original term was deemed to be too granular. In its place, use OMP:0007880 abolished resistance to an antimicrobial agent. When using OMP:0007880 for annotation, enter a database identifier for the specific antimicrobial agent in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

altered resistance to A22
type: Class
creation date: 2018-07-29T22:22:16Z
term replaced by: OMP:0007134
id: OMP:0007875
comment: This term and was deemed to be too granular. In its place, use OMP:0007134 altered resistance to an antimicrobial agent and enter database identifier for A22 in the Annotation Extension field.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

resistant to an antimicrobial agent
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-08-17T17:22:51Z
definition: An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field.
id: OMP:0007876
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_exact_synonym: not sensitive to an antimicrobial agent

Axiom
annotated target: An antimicrobial agent resistance phenotype where growth and reproduction of a microbe occurs in the presence of the antimicrobial agent specified in the Annotation Extension field.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistant to an antimicrobial agent

not resistant to an antimicrobial agent
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-08-17T17:25:08Z
definition: An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field.
id: OMP:0007877
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_exact_synonym: sensitive to an antimicrobial agent

Axiom
annotated target: An antimicrobial agent resistance phenotype where growth and reproduction of a microbe is inhibited by the presence of the antimicrobial agent specified in the Annotation Extension field.
database_cross_reference: OMP:das
annotated property: definition
annotated source: not resistant to an antimicrobial agent

increased resistance to an antimicrobial agent
type: Class
subclass of: altered resistance to an antimicrobial agent
creation date: 2018-08-17T17:26:30Z
definition: An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control.
id: OMP:0007878
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased resistance to an antimicrobial agent

decreased resistance to an antimicrobial agent
type: Class
subclass of: altered resistance to an antimicrobial agent
creation date: 2018-08-17T17:26:30Z
definition: An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control.
id: OMP:0007879
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An altered resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased resistance to an antimicrobial agent

abolished resistance to an antimicrobial agent
type: Class
subclass of: not resistant to an antimicrobial agent
subclass of: decreased resistance to an antimicrobial agent
creation date: 2018-08-17T17:26:45Z
definition: A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished.
id: OMP:0007880
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to an antimicrobial agent phenotype where resistance to the antimicrobial agent specified in the annotation extension field is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished resistance to an antimicrobial agent

host defense peptides resistance phenotype
type: Class
subclass of: antimicrobial agent resistance phenotype
creation date: 2018-08-17T18:21:52Z
definition: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host.
id: OMP:0007881
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_narrow_synonym: cecropin resistance phenotype
has_narrow_synonym: defensin resistance phenotype
created by: dsiegele
has_exact_synonym: host defense peptides sensitivity phenotype
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an antimicrobial peptide that is synthesized as part of the innate immune response of a eukaryotic host.
database_cross_reference: OMP:das
annotated property: definition
annotated source: host defense peptides resistance phenotype

abolished resistance to host defense peptides
type: Class
subclass of: not resistant to host defense peptide
subclass of: decreased resistance to host defense peptides
creation date: 2018-08-17T18:31:14Z
definition: A decreased resistance to host defense peptide phenotype where resistance is abolished.
id: OMP:0007882
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to host defense peptide phenotype where resistance is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished resistance to host defense peptides

abolished chemical resistance
type: Class
subclass of: decreased resistance to a chemical
creation date: 2018-08-17T19:14:42Z
definition: A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished.
id: OMP:0007883
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased resistance to a chemical phenotype where resistance to the specified chemical is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished chemical resistance

resistant to a metal
type: Class
subclass of: resistant to a chemical
subclass of: metal resistance phenotype
creation date: 2018-08-22T15:48:22Z
definition: A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal.
id: OMP:0007884
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A metal resistance phenotype where growth of a microbial population occurs in the presence of a metal.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistant to a metal

not resistant to a metal
type: Class
subclass of: not resistant to a chemical
subclass of: metal resistance phenotype
creation date: 2018-08-22T15:53:56Z
definition: A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal.
id: OMP:0007885
created by: dsiegele
has_obo_namespace: microbial_phenotype
has_exact_synonym: sensitive to a metal

Axiom
annotated target: A metal resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a metal.
database_cross_reference: OMP:das
annotated property: definition
annotated source: not resistant to a metal

decreased resistance to a metal
type: Class
subclass of: altered resistance to a metal
creation date: 2018-08-22T15:54:29Z
definition: A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control.
id: OMP:0007886
created by: dsiegele
has_exact_synonym: increased sensitivity to a metal
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased resistance to a metal

abolished resistance to a metal
type: Class
subclass of: not resistant to a metal
subclass of: decreased resistance to a metal
creation date: 2018-08-22T15:54:56Z
definition: A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished.
id: OMP:0007887
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A decreased metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished resistance to a metal

increased resistance to a metal
type: Class
subclass of: altered resistance to a metal
creation date: 2018-08-22T15:55:19Z
definition: A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control.
id: OMP:0007888
has_exact_synonym: decreased sensitivity to a metal
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased resistance to a metal

altered resistance to a metal
type: Class
subclass of: altered resistance to chemical
subclass of: metal resistance phenotype
creation date: 2018-08-22T15:56:07Z
definition: A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control.
id: OMP:0007889
has_exact_synonym: altered sensitivity to a metal
created by: dsiegele
has_obo_namespace: microbial_phenotype

Axiom
annotated target: A metal resistance phenotype where growth and reproduction of a microbe in the presence of a metal is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered resistance to a metal

metal resistance phenotype
type: Class
subclass of: chemical resistance phenotype
creation date: 2018-08-22T18:04:54Z
definition: A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal.
id: OMP:0007890
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: metal sensitivity phenotype
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a metal.
database_cross_reference: CHEBI:33521
database_cross_reference: OMP:das
annotated property: definition
annotated source: metal resistance phenotype

surfactant resistance phenotype
type: Class
subclass of: chemical resistance phenotype
creation date: 2018-08-22T18:12:18Z
definition: A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces.
id: OMP:0007891
has_narrow_synonym: benzalkonium chloride resistance phenotype
has_narrow_synonym: detergent resistance phenotype
has_obo_namespace: microbial_phenotype
created by: siegele
in_subset: qc do not annotate
in_subset: qc do not manually annotate

Axiom
database_cross_reference: CHEBI:3020
annotated target: benzalkonium chloride resistance phenotype
annotated source: surfactant resistance phenotype
annotated property: has_narrow_synonym

Axiom
annotated target: A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population in the presence of a surfactant. A surfactant is a substance that lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapor and/or at other interfaces.
database_cross_reference: CHEBI:35195
database_cross_reference: OMP:das
annotated property: definition
annotated source: surfactant resistance phenotype

resistant to a surfactant
type: Class
subclass of: surfactant resistance phenotype
creation date: 2018-08-22T18:13:28Z
definition: A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant.
id: OMP:0007892
has_obo_namespace: microbial_phenotype
has_exact_synonym: not sensitive to a surfactant
created by: siegele

Axiom
annotated target: A surfactant resistance phenotype where growth and reproduction of a microbe occurs in the presence of a surfactant.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistant to a surfactant

not resistant to a surfactant
type: Class
subclass of: surfactant resistance phenotype
creation date: 2018-08-22T18:13:28Z
definition: A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant.
id: OMP:0007893
has_obo_namespace: microbial_phenotype
has_exact_synonym: sensitive to a surfactant
created by: siegele

Axiom
annotated target: A surfactant resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of a surfactant.
database_cross_reference: OMP:das
annotated property: definition
annotated source: not resistant to a surfactant

altered resistance to a surfactant
type: Class
subclass of: altered resistance to chemical
subclass of: surfactant resistance phenotype
creation date: 2018-08-22T18:13:28Z
definition: A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control.
id: OMP:0007894
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered resistance to a surfactant

increased resistance to a surfactant
type: Class
subclass of: altered resistance to a surfactant
creation date: 2018-08-22T18:13:58Z
definition: An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control.
id: OMP:0007895
has_exact_synonym: decreased sensitivity to a surfactant
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased resistance to a surfactant

decreased resistance to a surfactant
type: Class
subclass of: altered resistance to a surfactant
creation date: 2018-08-22T18:13:58Z
definition: An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control.
id: OMP:0007896
has_exact_synonym: increased sensitivity to a surfactant
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased resistance to a surfactant

abolished resistance to a surfactant
type: Class
subclass of: not resistant to a surfactant
subclass of: decreased resistance to a surfactant
creation date: 2018-08-22T18:13:58Z
definition: A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished.
id: OMP:0007897
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased surfactant resistance phenotype where growth and reproduction of a microbe in the presence of a surfactant is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished resistance to a surfactant

bile acids resistance phenotype
type: Class
subclass of: chemical resistance phenotype
creation date: 2018-08-23T15:36:18Z
definition: A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids.
id: OMP:0007898
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
has_exact_synonym: bile acid sensitivity phenotype
has_narrow_synonym: bile salt resistance phenotype
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A chemical resistance phenotype relating to the resistance or sensitivity of growth and reproduction of a microbial population to bile acids.
database_cross_reference: CHEBI:138366
database_cross_reference: OMP:das
annotated property: definition
annotated source: bile acids resistance phenotype

resistant to bile acids
type: Class
subclass of: bile acids resistance phenotype
creation date: 2018-08-23T16:11:39Z
definition: A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids.
id: OMP:0007899
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bile acids resistance phenotype where growth and reproduction of a microbe occurs in the presence of bile acids.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistant to bile acids

not resistant to bile acids
type: Class
subclass of: bile acids resistance phenotype
creation date: 2018-08-23T16:11:39Z
definition: A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids.
id: OMP:0007900
has_obo_namespace: microbial_phenotype
has_exact_synonym: sensitive to bile acids
created by: siegele

Axiom
annotated target: A bile acids resistance phenotype where growth and reproduction of a microbe doesn't occur in the presence of bile acids.
database_cross_reference: OMP:das
annotated property: definition
annotated source: not resistant to bile acids

altered resistance to bile acids
type: Class
subclass of: altered resistance to chemical
subclass of: bile acids resistance phenotype
creation date: 2018-08-23T16:11:39Z
definition: A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control.
id: OMP:0007901
has_exact_synonym: altered sensitivity to bile acids
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A bile acid resistance phenotype where resistance to a bile acid is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered resistance to bile acids

increased resistance to bile acids
type: Class
subclass of: altered resistance to bile acids
creation date: 2018-08-23T16:11:39Z
definition: An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control.
id: OMP:0007902
has_exact_synonym: decreased sensitivity to bile acids
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased resistance to bile acids

decreased resistance to bile acids
type: Class
subclass of: altered resistance to bile acids
creation date: 2018-08-23T16:11:39Z
definition: An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control.
id: OMP:0007903
has_narrow_synonym: increased sensitivity to bile acids
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased resistance to bile acids

abolished resistance to bile acids
type: Class
subclass of: not resistant to bile acids
subclass of: decreased resistance to bile acids
creation date: 2018-08-23T16:11:39Z
definition: A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished.
id: OMP:0007904
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased resistance to bile acids phenotype where growth and reproduction of a microbe in the presence of bile acids is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished resistance to bile acids

altered nitrogen source utilization
type: Class
subclass of: nitrogen source utilization phenotype
subclass of: altered nutrient utilization
creation date: 2018-08-24T12:33:54Z
id: OMP:0007905
has_obo_namespace: microbial_phenotype
created by: siegele

altered organic nitrogen source utilization
type: Class
subclass of: organic nitrogen source utilization phenotype
subclass of: altered nitrogen source utilization
creation date: 2018-08-24T12:37:35Z
id: OMP:0007906
has_obo_namespace: microbial_phenotype
created by: siegele

presence of biofilm formation
type: Class
subclass of: biofilm formation phenotype
creation date: 2018-08-26T19:22:17Z
definition: A biofilm formation phenotype where a microbe is capable of forming a biofilm.
id: OMP:0007907
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A biofilm formation phenotype where a microbe is capable of forming a biofilm.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of biofilm formation

chelator resistance phenotype
type: Class
subclass of: chemical resistance phenotype
creation date: 2018-08-24T16:59:36Z
id: OMP:0007908
has_obo_namespace: microbial_phenotype
created by: siegele

resistant to a chelator
type: Class
subclass of: chelator resistance phenotype
creation date: 2018-08-24T17:00:53Z
id: OMP:0007909
has_obo_namespace: microbial_phenotype
created by: siegele

not resistant to a chelator
type: Class
subclass of: chelator resistance phenotype
creation date: 2018-08-24T17:00:53Z
id: OMP:0007910
has_obo_namespace: microbial_phenotype
created by: siegele

altered resistance to a chelator
type: Class
subclass of: altered resistance to chemical
subclass of: chelator resistance phenotype
creation date: 2018-08-24T17:00:53Z
id: OMP:0007911
has_obo_namespace: microbial_phenotype
created by: siegele

decreased resistance to a chelator
type: Class
subclass of: altered resistance to a chelator
creation date: 2018-08-24T17:00:53Z
id: OMP:0007912
has_obo_namespace: microbial_phenotype
created by: siegele

increased resistance to a chelator
type: Class
subclass of: altered resistance to a chelator
creation date: 2018-08-24T17:00:53Z
id: OMP:0007913
has_obo_namespace: microbial_phenotype
created by: siegele

abolished resistance to a chelator
type: Class
subclass of: not resistant to a chelator
subclass of: decreased resistance to a chelator
creation date: 2018-08-24T17:01:28Z
id: OMP:0007914
has_obo_namespace: microbial_phenotype
created by: siegele

absence of biofilm formation
type: Class
subclass of: biofilm formation phenotype
creation date: 2018-08-26T19:22:17Z
definition: A biofilm formation phenotype where a microbe is incapable of forming a biofilm.
id: OMP:0007915
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A biofilm formation phenotype where a microbe is incapable of forming a biofilm.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of biofilm formation

decreased vegetative cell diameter
type: Class
subclass of: decreased cell diameter
creation date: 2018-09-05T14:59:12Z
definition: An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control.
id: OMP:0007916
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell size phenotype observed in the vegetative growth phase of the life cycle where the diameter of a microbial cell with a circular cross-section is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased vegetative cell diameter

cell size variability
type: Class
subclass of: cell morphology variability
creation date: 2018-09-05T15:18:58Z
definition: A cell population phenotype that describes the extent of cell size variability within a growing microbial cell population.
id: OMP:0007917
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell size variability within a cell population
type: Class
subclass of: cell size variability
creation date: 2018-09-05T15:21:39Z
id: OMP:0007918
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell population growth
type: Class
subclass of: cell population growth phenotype
creation date: 2018-09-05T15:58:51Z
id: OMP:0007919
has_obo_namespace: microbial_phenotype
created by: siegele

absence of cell population growth
type: Class
subclass of: cell population growth phenotype
creation date: 2018-09-05T15:59:26Z
id: OMP:0007920
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell size variability within a cell population
type: Class
subclass of: cell size variability
creation date: 2018-09-05T16:06:50Z
id: OMP:0007921
has_obo_namespace: microbial_phenotype
created by: siegele

absence of cell size variability within a cell population
type: Class
subclass of: cell size variability
creation date: 2018-09-05T16:07:15Z
id: OMP:0007922
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell size variability within a cell population
type: Class
subclass of: altered cell size variability within a cell population
creation date: 2018-09-05T16:08:39Z
id: OMP:0007923
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell size variability within a cell population
type: Class
subclass of: altered cell size variability within a cell population
creation date: 2018-09-05T16:08:39Z
id: OMP:0007924
has_obo_namespace: microbial_phenotype
created by: siegele

abolished cell size variability within a cell population
type: Class
subclass of: absence of cell size variability within a cell population
subclass of: decreased cell size variability within a cell population
creation date: 2018-09-05T16:08:39Z
id: OMP:0007925
has_obo_namespace: microbial_phenotype
created by: siegele

increased anaerobic population growth
type: Class
subclass of: altered anaerobic population growth
creation date: 2018-09-05T16:39:27Z
comment: Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
definition: An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control.
id: OMP:0007926
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased anaerobic population growth

decreased anaerobic population growth
type: Class
subclass of: altered anaerobic population growth
creation date: 2018-09-05T16:39:27Z
comment: Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
definition: An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control.
id: OMP:0007927
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered anaerobic population growth phenotype where growth of a microbial population in the absence of O2 is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased anaerobic population growth

commonly used descriptors
type: Class
subclass of: microbial phenotype
creation date: 2018-09-06T17:18:16Z
definition: Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group.
id: OMP:0007928
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: Microbial taxa are commonly described in terms of phenotypic characteristics that are shared by all or almost all members of a particular taxonomic group.
database_cross_reference: OMP:das
annotated property: definition
annotated source: commonly used descriptors

decreased microaerophilic population growth
type: Class
subclass of: altered microaerophilic population growth
creation date: 2018-09-07T18:13:30Z
definition: A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
comment: Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
id: OMP:0007929
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where growth of a microbial population in a microaerophilic environment is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased microaerophilic population growth

increased microaerophilic population growth
type: Class
subclass of: altered microaerophilic population growth
creation date: 2018-09-07T18:14:29Z
comment: Altered population growth may result from changes in population growth rate or population growth yield. Consider using a more specific term if either of these parameters was determined in the experiments.
definition: An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
id: OMP:0007930
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered microaerophilic population growth phenotype where growth of a microbial population in a microaerophilic environment is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased microaerophilic population growth

altered population phenotype
type: Class
subclass of: population phenotype
creation date: 2018-09-15T01:45:33Z
definition: A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control.
id: OMP:0007931
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A microbial population phenotype where the phenotype of a microbial population is altered in some way relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered population phenotype

resistance to nutrient limitation stress phenotype
type: Class
subclass of: resistance to stress phenotype
creation date: 2018-11-04T16:55:30Z
definition: A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient.
id: OMP:0007932
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to stress phenotype related to the resistance or sensitivity of a microbial population to limitation for an essential nutrient.
database_cross_reference: OMP:das
annotated property: definition
annotated source: resistance to nutrient limitation stress phenotype

presence of resistance to nutrient limitation
type: Class
subclass of: resistance to nutrient limitation stress phenotype
creation date: 2018-11-04T16:56:28Z
definition: A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient.
id: OMP:0007933
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to stress phenotype where a microbial population is resistant to limitation for an essential nutrient.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of resistance to nutrient limitation

absence of resistance to nutrient limitation
type: Class
subclass of: resistance to nutrient limitation stress phenotype
creation date: 2018-11-04T16:56:28Z
definition: A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient.
id: OMP:0007934
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to stress phenotype where a microbial population isn't resistant to limitation for an essential nutrient.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of resistance to nutrient limitation

altered resistance to nutrient limitation
type: Class
subclass of: altered resistance to stress
subclass of: resistance to nutrient limitation stress phenotype
creation date: 2018-11-04T16:56:28Z
definition: A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control.
id: OMP:0007935
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A resistance to stress phenotype where the resistance of a microbial population to nutrient limitation is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered resistance to nutrient limitation

increased resistance to nutrient limitation
type: Class
subclass of: altered resistance to nutrient limitation
creation date: 2018-11-04T16:56:35Z
id: OMP:0007936
has_obo_namespace: microbial_phenotype
created by: siegele

decreased resistance to nutrient limitation
type: Class
subclass of: altered resistance to nutrient limitation
creation date: 2018-11-04T16:56:58Z
id: OMP:0007937
has_obo_namespace: microbial_phenotype
created by: siegele

abolished resistance to nutrient limitation
type: Class
subclass of: absence of resistance to nutrient limitation
subclass of: decreased resistance to nutrient limitation
creation date: 2018-11-04T16:57:25Z
id: OMP:0007938
has_obo_namespace: microbial_phenotype
created by: siegele

increased ploidy in a vegetative microbial cell
type: Class
subclass of: altered vegetative cell phenotype
creation date: 2019-02-01T15:05:44Z
definition: A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control.
id: OMP:0007939
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sets of chromosomes in a microbial cell, i.e. ploidy, increases relative to the designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased ploidy in a vegetative microbial cell

increased spontaneous diploidization in a vegetative microbial cell
type: Class
subclass of: increased ploidy in a vegetative microbial cell
creation date: 2019-02-01T15:11:39Z
definition: An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control.
id: OMP:0007940
has_narrow_synonym: increased spontaneous diploidization
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered cell phenotype observed in the vegetative phase of the life cycle in which haploid microbial cells spontaneously form cells with diploid DNA content at a higher frequency than the designated control.
database_cross_reference: FYPO:0000252
database_cross_reference: OMP:DAS
annotated property: definition
annotated source: increased spontaneous diploidization in a vegetative microbial cell

Axiom
database_cross_reference: FYPO:0000252
annotated target: increased spontaneous diploidization
annotated source: increased spontaneous diploidization in a vegetative microbial cell
annotated property: has_narrow_synonym

altered viability after microbial spore germination
type: Class
subclass of: altered vegetative cell viability
creation date: 2019-02-01T17:20:01Z
id: OMP:0007941
has_obo_namespace: microbial_phenotype
created by: siegele

increased survival in macrophage
type: Class
subclass of: altered survival in macrophage
creation date: 2019-03-27T14:44:53Z
id: OMP:0007942
created by: dsiegele
has_obo_namespace: microbial_phenotype

decreased survival in macrophage
type: Class
subclass of: altered survival in macrophage
creation date: 2019-03-27T14:45:12Z
id: OMP:0007943
created by: dsiegele
has_obo_namespace: microbial_phenotype

abolished survival in macrophage
type: Class
subclass of: absence of survival in macrophage
subclass of: decreased survival in macrophage
creation date: 2019-03-27T14:45:29Z
id: OMP:0007944
created by: dsiegele
has_obo_namespace: microbial_phenotype

presence of population growth at acidic pH
type: Class
subclass of: pH effects on population growth phenotype
creation date: 2019-09-12T00:41:29Z
definition: A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7).
id: OMP:0007945
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7).
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of population growth at acidic pH

absence of population growth at acidic pH
type: Class
subclass of: pH effects on population growth phenotype
creation date: 2019-09-12T00:42:29Z
definition: A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7).
id: OMP:0007946
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7).
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of population growth at acidic pH

presence of growth at alkaline pH
type: Class
creation date: 2019-09-12T10:31:33Z
definition: A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
id: OMP:0007947
comment: This term was made obsolete because it was redundant with OMP:0007771. The two terms weren't merged because the redundancy of OMP:0007947 was discovered after one day and was never committed to a release.
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7).
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of growth at alkaline pH

absence of growth at alkaline pH
type: Class
creation date: 2019-09-12T10:44:32Z
definition: A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7).
id: OMP:0007948
has_obo_namespace: microbial_phenotype
created by: siegele
deprecated: true

Axiom
annotated target: A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7).
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of growth at alkaline pH

<new term>
type: Class
subclass of: cell population viability phenotype
creation date: 2019-09-13T00:12:25Z
id: OMP:0007949
has_obo_namespace: microbial_phenotype
created by: siegele

presence of population growth at high temperature
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2019-09-13T01:17:11Z
definition: A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
id: OMP:0007950
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where a microbial population is able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of population growth at high temperature

absence of population growth at high temperature
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2019-09-13T01:22:12Z
definition: A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
id: OMP:0007951
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where a microbial population isn't able to grow and reproduce at a temperature that is towards the upper end of the organism's temperature growth range.
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of population growth at high temperature

altered population growth at high temperature
type: Class
subclass of: temperature effects on population growth phenotype
subclass of: altered population growth range
creation date: 2019-09-13T01:24:01Z
definition: A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control.
id: OMP:0007952
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A population growth phenotype where the rate and/or extent of growth of a microbial population at a temperature that is towards the upper end of the organism's temperature growth range is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered population growth at high temperature

increased population growth at high temperature
type: Class
subclass of: altered population growth at high temperature
creation date: 2019-09-13T01:25:33Z
id: OMP:0007953
has_obo_namespace: microbial_phenotype
created by: siegele

decreased population growth at high temperature
type: Class
subclass of: absence of population growth at high temperature
subclass of: altered population growth at high temperature
creation date: 2019-09-13T01:25:52Z
id: OMP:0007954
has_obo_namespace: microbial_phenotype
created by: siegele

abolished population growth at high temperature
type: Class
subclass of: decreased population growth at high temperature
creation date: 2019-09-13T01:26:12Z
id: OMP:0007955
has_obo_namespace: microbial_phenotype
created by: siegele

presence of population growth at low temperature
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2019-09-13T01:41:59Z
id: OMP:0007956
has_obo_namespace: microbial_phenotype
created by: siegele

absence of population growth at low temperature
type: Class
subclass of: temperature effects on population growth phenotype
creation date: 2019-09-13T01:41:59Z
id: OMP:0007957
has_obo_namespace: microbial_phenotype
created by: siegele

altered population growth at low temperature
type: Class
subclass of: temperature effects on population growth phenotype
subclass of: altered population growth
creation date: 2019-09-13T01:41:59Z
id: OMP:0007958
has_obo_namespace: microbial_phenotype
created by: siegele

increased population growth at low temperature
type: Class
subclass of: altered population growth at low temperature
creation date: 2019-09-13T01:41:59Z
id: OMP:0007959
has_obo_namespace: microbial_phenotype
created by: siegele

decreased population growth at low temperature
type: Class
subclass of: altered population growth at low temperature
creation date: 2019-09-13T01:41:59Z
id: OMP:0007960
has_obo_namespace: microbial_phenotype
created by: siegele

abolished population growth at low temperature
type: Class
subclass of: absence of population growth at low temperature
subclass of: decreased population growth at low temperature
creation date: 2019-09-13T01:41:59Z
id: OMP:0007961
has_obo_namespace: microbial_phenotype
created by: siegele

presence of cell population growth during nutrient limitation
type: Class
subclass of: cell population growth during nutrient limitation phenotype
creation date: 2019-09-23T14:17:16Z
definition: A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
id: OMP:0007962
has_obo_namespace: microbial_phenotype
has_narrow_synonym: normal cell population growth during glucose starvation
has_narrow_synonym: normal cell population growth during iron starvation
created by: siegele

Axiom
database_cross_reference: FYPO:0004765
annotated target: normal cell population growth during glucose starvation
annotated source: presence of cell population growth during nutrient limitation
annotated property: has_narrow_synonym

Axiom
database_cross_reference: FYPO:0001814
annotated target: normal cell population growth during iron starvation
annotated source: presence of cell population growth during nutrient limitation
annotated property: has_narrow_synonym

Axiom
annotated target: A population growth phenotype where growth of a microbial population occurs under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
database_cross_reference: OMP:das
annotated property: definition
annotated source: presence of cell population growth during nutrient limitation

absence of cell population growth during nutrient limitation
type: Class
subclass of: cell population growth during nutrient limitation phenotype
creation date: 2019-09-23T14:22:18Z
definition: A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration).
id: OMP:0007963
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population growth phenotype where growth of a microbial population doesn't occur under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is at present low concentration).
database_cross_reference: OMP:das
annotated property: definition
annotated source: absence of cell population growth during nutrient limitation

cell population growth during nutrient limitation phenotype
type: Class
subclass of: cell population growth phenotype
creation date: 2019-09-23T14:25:30Z
definition: A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
id: OMP:0007964
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population growth phenotype related to the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration).
database_cross_reference: OMP:das
annotated property: definition
annotated source: cell population growth during nutrient limitation phenotype

altered cell population growth during nutrient limitation
type: Class
subclass of: altered cell population growth
subclass of: cell population growth during nutrient limitation phenotype
creation date: 2019-09-23T14:31:13Z
definition: A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control.
id: OMP:0007965
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered cell population growth during nutrient limitation

increased population growth during nutrient limitation
type: Class
subclass of: altered cell population growth during nutrient limitation
creation date: 2019-09-23T14:32:07Z
definition: An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control.
id: OMP:0007966
has_narrow_synonym: increased cell population growth during glucose starvation
has_narrow_synonym: increased vegetative cell population growth during phosphate starvation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0003938
annotated target: increased cell population growth during glucose starvation
annotated source: increased population growth during nutrient limitation
annotated property: has_narrow_synonym

Axiom
annotated target: An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased population growth during nutrient limitation

Axiom
database_cross_reference: FYPO:0004967
annotated target: increased vegetative cell population growth during phosphate starvation
annotated source: increased population growth during nutrient limitation
annotated property: has_narrow_synonym

decreased cell population growth during nutrient limitation
type: Class
subclass of: altered cell population growth during nutrient limitation
creation date: 2019-09-23T14:33:15Z
definition: An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control.
id: OMP:0007967
has_narrow_synonym: decreased cell population growth during glucose starvation
has_narrow_synonym: decreased cell population growth during nitrogen starvation
has_narrow_synonym: decreased vegetative cell population growth during phosphate starvation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
database_cross_reference: FYPO:0004968
annotated target: decreased vegetative cell population growth during phosphate starvation
annotated source: decreased cell population growth during nutrient limitation
annotated property: has_narrow_synonym

Axiom
database_cross_reference: FYPO:0003743
annotated target: decreased cell population growth during glucose starvation
annotated source: decreased cell population growth during nutrient limitation
annotated property: has_narrow_synonym

Axiom
annotated target: An altered cell population growth phenotype where the rate or extent of growth of a microbial population under conditions of limitation for an essential nutrient (i.e. conditions where an essential nutrient is present at low concentration) is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased cell population growth during nutrient limitation

Axiom
database_cross_reference: FYPO:0000709
annotated target: decreased cell population growth during nitrogen starvation
annotated source: decreased cell population growth during nutrient limitation
annotated property: has_narrow_synonym

abolished population growth during nutrient limitation
type: Class
subclass of: absence of cell population growth during nutrient limitation
subclass of: decreased cell population growth during nutrient limitation
creation date: 2019-09-23T14:34:07Z
definition: A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished.
id: OMP:0007968
has_narrow_synonym: abolished cell population growth during glucose starvation
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: A decreased cell population growth where the ability of a microbial population to grow under conditions of nutrient limitation ((i.e. conditions where an essential nutrient is present at low concentration) is abolished.
database_cross_reference: OMP:das
annotated property: definition
annotated source: abolished population growth during nutrient limitation

Axiom
database_cross_reference: FYPO:0004837
annotated target: abolished cell population growth during glucose starvation
annotated source: abolished population growth during nutrient limitation
annotated property: has_narrow_synonym

presence of organic nitrogen source utilization
type: Class
subclass of: organic nitrogen source utilization phenotype
creation date: 2019-11-17T15:43:44Z
id: OMP:0007969
has_obo_namespace: microbial_phenotype
created by: siegele

absence of organic nitrogen source utilization
type: Class
subclass of: organic nitrogen source utilization phenotype
creation date: 2019-11-17T15:43:44Z
id: OMP:0007970
has_obo_namespace: microbial_phenotype
created by: siegele

tolerance to an antimicrobial agent phenotype
type: Class
subclass of: not resistant to an antimicrobial agent
creation date: 2020-05-08T13:13:10Z
definition: An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK).
id: OMP:0007971
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. Tolerance applies only to microbiocidal antimicrobial agents and not to microbiostatic agents. This is in contrast to resistance which applies to both microbiocidal and microbiostatic agents.
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An antimicrobial agent resistance phenotype that describes the ability of microorganisms to survive a transient exposure to antimicrobial agents at concentrations that would otherwise be lethal. A quantitative measure of tolerance is the minimum duration for killing (MDK).
database_cross_reference: DOI:10.1038/nrmicro.2016.34
database_cross_reference: OMP:das
database_cross_reference: PMID:27080241
annotated property: definition
annotated source: tolerance to an antimicrobial agent phenotype

altered tolerance to an antimicrobial agent phenotype
type: Class
subclass of: tolerance to an antimicrobial agent phenotype
creation date: 2020-05-08T13:17:08Z
definition: An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control.
id: OMP:0007972
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An antimicrobial agent tolerance phenotype where tolerance, the ability to survive transient exposure to an antimicrobial agent, is altered relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: altered tolerance to an antimicrobial agent phenotype

increased tolerance to an antimicrobial agent
type: Class
subclass of: altered tolerance to an antimicrobial agent phenotype
creation date: 2020-05-08T13:17:08Z
definition: An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control.
id: OMP:0007973
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is increased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: increased tolerance to an antimicrobial agent

decreased tolerance to an antimicrobial agent
type: Class
subclass of: altered tolerance to an antimicrobial agent phenotype
creation date: 2020-05-08T13:17:08Z
definition: An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control.
id: OMP:0007974
has_obo_namespace: microbial_phenotype
created by: siegele

Axiom
annotated target: An altered tolerance to an antimicrobial agent phenotype where minimum duration of killing is decreased relative to a designated control.
database_cross_reference: OMP:das
annotated property: definition
annotated source: decreased tolerance to an antimicrobial agent

altered cell length
type: Class
subclass of: cell length phenotype
subclass of: altered cell size
creation date: 2020-07-22T19:20:08Z
id: OMP:0007975
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell length variability
type: Class
subclass of: altered cell population phenotype
subclass of: altered cell size variability within a cell population
creation date: 2020-07-22T19:21:08Z
id: OMP:0007976
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell diameter
type: Class
subclass of: cell diameter phenotype
subclass of: altered cell size
creation date: 2020-07-22T19:22:09Z
id: OMP:0007977
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell diameter variability
type: Class
subclass of: altered cell diameter
creation date: 2020-07-22T19:22:31Z
id: OMP:0007978
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell length variability
type: Class
subclass of: altered cell length variability
creation date: 2020-07-22T19:24:06Z
id: OMP:0007979
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell length variability
type: Class
subclass of: altered cell length variability
creation date: 2020-07-22T19:24:06Z
id: OMP:0007980
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell diameter variability
type: Class
subclass of: altered cell diameter variability
creation date: 2020-07-22T19:36:15Z
id: OMP:0007981
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell diameter variability
type: Class
subclass of: altered cell diameter variability
creation date: 2020-07-22T19:36:15Z
id: OMP:0007982
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell area
type: Class
subclass of: cell area phenotype
subclass of: altered cell size
creation date: 2020-07-22T20:21:33Z
id: OMP:0007983
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell area variability
type: Class
subclass of: altered cell size variability within a cell population
subclass of: altered cell area
creation date: 2020-07-22T20:22:13Z
id: OMP:0007984
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell area
type: Class
subclass of: altered cell area
creation date: 2020-07-22T20:23:00Z
id: OMP:0007985
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell area
type: Class
subclass of: altered cell area
creation date: 2020-07-22T20:23:00Z
id: OMP:0007986
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell area variability
type: Class
subclass of: altered cell area variability
creation date: 2020-07-22T20:23:10Z
id: OMP:0007987
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell area variability
type: Class
subclass of: altered cell area variability
creation date: 2020-07-22T20:23:34Z
id: OMP:0007988
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell volume
type: Class
subclass of: cell volume phenotype
subclass of: altered cell size
creation date: 2020-07-22T20:25:24Z
id: OMP:0007989
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell volume variability
type: Class
subclass of: altered cell volume
creation date: 2020-07-22T20:26:40Z
id: OMP:0007990
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell volume variability
type: Class
subclass of: altered cell volume variability
creation date: 2020-07-22T20:27:50Z
id: OMP:0007991
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell volume variability
type: Class
subclass of: altered cell volume variability
creation date: 2020-07-22T20:27:50Z
id: OMP:0007992
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell surface area
type: Class
subclass of: cell surface area phenotype
subclass of: altered cell size
creation date: 2020-07-22T20:28:53Z
id: OMP:0007993
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell surface area
type: Class
subclass of: altered cell surface area
creation date: 2020-07-22T20:29:49Z
id: OMP:0007994
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell surface area
type: Class
subclass of: altered cell surface area
creation date: 2020-07-22T20:29:49Z
id: OMP:0007995
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell surface area variability
type: Class
subclass of: altered cell size variability within a cell population
subclass of: altered cell surface area
creation date: 2020-07-22T20:29:49Z
id: OMP:0007996
has_obo_namespace: microbial_phenotype
created by: siegele

decreased cell surface area variability
type: Class
subclass of: altered cell surface area variability
creation date: 2020-07-22T20:31:33Z
id: OMP:0007997
has_obo_namespace: microbial_phenotype
created by: siegele

increased cell surface area variability
type: Class
subclass of: altered cell surface area variability
creation date: 2020-07-22T20:31:33Z
id: OMP:0007998
has_obo_namespace: microbial_phenotype
created by: siegele

altered cell surface area-to-volume ratio
type: Class
subclass of: cell surface area-to-volume ratio phenotype
subclass of: altered cell size
creation date: 2020-07-22T20:32:47Z
id: OMP:0007999
has_obo_namespace: microbial_phenotype
created by: siegele

spore morphology phenotype
type: Class
subclass of: cell morphology phenotype
creation date: 2015-06-03T13:12:00Z
definition: A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe.
database_cross_reference: FAO:0000019
id: OMP:0008000
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
created by: kanderson
has_obo_namespace: microbial_phenotype
in_subset: qc do not manually annotate

Axiom
annotated target: A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe.
database_cross_reference: OMP:KDA
annotated property: definition
annotated source: spore morphology phenotype

spore
type: Axiom
annotated target: FAO:0000019
annotated source: spore morphology phenotype
annotated property: database_cross_reference

endospore germ cell wall phenotype
type: Class
subclass of: endospore external encapsulating structure phenotype
creation date: 2015-06-08T12:07:41Z
definition: An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination.
id: OMP:0008001
created by: kanderson
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination.
database_cross_reference: OMP:KDA
database_cross_reference: PMID:3101583
annotated property: definition
annotated source: endospore germ cell wall phenotype

absence of an endospore germ cell wall
type: Class
subclass of: endospore germ cell wall phenotype
creation date: 2015-06-08T12:10:22Z
definition: An endospore germ cell wall phenotype where an endospore lacks a germ cell wall.
id: OMP:0008002
created by: kanderson
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore germ cell wall phenotype where an endospore lacks a germ cell wall.
database_cross_reference: OMP:KDA
annotated property: definition
annotated source: absence of an endospore germ cell wall

presence of an endospore germ cell wall
type: Class
subclass of: endospore germ cell wall phenotype
creation date: 2015-06-08T12:10:22Z
definition: An endospore germ cell wall phenotype where an endospore has a germ cell wall.
id: OMP:0008003
created by: kanderson
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore germ cell wall phenotype where an endospore has a germ cell wall.
database_cross_reference: OMP:KDA
annotated property: definition
annotated source: presence of an endospore germ cell wall

endospore core phenotype
type: Class
subclass of: OMP_0008013
creation date: 2015-06-08T12:14:34Z
definition: An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid.
id: OMP:0008004
created by: kanderson
has_obo_namespace: microbial_phenotype

Axiom
annotated target: An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid.
database_cross_reference: ISBN:9780073402406
database_cross_reference: OMP:KDA
annotated property: definition
annotated source: endospore core phenotype