name: mixs-schema-subset source: https://github.com/microbiomedata/mixs/tree/main/model/schema id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml imports: - linkml:types - attribute_values prefixes: nmdc: https://w3id.org/nmdc/ MIXS: https://w3id.org/mixs/ linkml: https://w3id.org/linkml/ xsd: http://www.w3.org/2001/XMLSchema# shex: http://www.w3.org/ns/shex# schema: http://schema.org/ SO: http://purl.obolibrary.org/obo/SO_ NCIT: http://purl.obolibrary.org/obo/NCIT_ default_prefix: MIXS enums: AeroStrucEnum: permissible_values: glider: {} plane: {} ArchStrucEnum: permissible_values: building: {} home: {} shed: {} BiolStatEnum: permissible_values: breeder's line: {} clonal selection: {} hybrid: {} inbred line: {} mutant: {} natural: {} semi-natural: {} wild: {} BioticRelationshipEnum: permissible_values: commensalism: {} free living: {} mutualism: {} parasitism: {} symbiotic: {} BuildDocsEnum: permissible_values: building information model: {} commissioning report: {} complaint logs: {} contract administration: {} cost estimate: {} janitorial schedules or logs: {} maintenance plans: {} schedule: {} sections: {} shop drawings: {} submittals: {} ventilation system: {} windows: {} BuildOccupTypeEnum: permissible_values: airport: {} commercial: {} health care: {} high rise: {} low rise: {} market: {} office: {} residence: {} residential: {} restaurant: {} school: {} sports complex: {} wood framed: {} BuildingSettingEnum: permissible_values: exurban: {} rural: {} suburban: {} urban: {} BuiltStrucSetEnum: permissible_values: rural: {} urban: {} CeilFinishMatEnum: permissible_values: PVC: {} drywall: {} fiberglass: {} metal: {} mineral fibre: {} mineral wool/calcium silicate: {} plasterboard: {} stucco: {} tiles: {} wood: {} CeilStrucEnum: permissible_values: concrete: {} wood frame: {} CeilTypeEnum: permissible_values: barrel-shaped: {} cathedral: {} coffered: {} concave: {} cove: {} dropped: {} stretched: {} CeilingWallTextureEnum: permissible_values: Santa-Fe texture: {} crows feet: {} crows-foot stomp: {} double skip: {} hawk and trowel: {} knockdown: {} orange peel: {} popcorn: {} rosebud stomp: {} skip trowel: {} smooth: {} stomp knockdown: {} swirl: {} CompassDirections8Enum: permissible_values: east: {} north: {} northeast: {} northwest: {} south: {} southeast: {} southwest: {} west: {} DamagedEnum: permissible_values: damaged: {} needs repair: {} new: {} rupture: {} visible wear: {} DamagedRupturedEnum: permissible_values: damaged: {} needs repair: {} new: {} rupture: {} visible wear: {} DeposEnvEnum: permissible_values: Continental - Aeolian: {} Continental - Alluvial: {} Continental - Fluvial: {} Continental - Lacustrine: {} Marine - Deep: {} Marine - Reef: {} Marine - Shallow: {} Other - Evaporite: {} Other - Glacial: {} Other - Volcanic: {} Transitional - Beach: {} Transitional - Deltaic: {} Transitional - Lagoonal: {} Transitional - Lake: {} Transitional - Tidal: {} other: {} DoorCompTypeEnum: permissible_values: metal covered: {} revolving: {} sliding: {} telescopic: {} DoorDirectEnum: permissible_values: inward: {} outward: {} sideways: {} DoorMatEnum: permissible_values: aluminum: {} cellular PVC: {} engineered plastic: {} fiberboard: {} fiberglass: {} metal: {} thermoplastic alloy: {} vinyl: {} wood: {} wood/plastic composite: {} DoorMoveEnum: permissible_values: collapsible: {} folding: {} revolving: {} rolling shutter: {} sliding: {} swinging: {} DoorTypeEnum: permissible_values: composite: {} metal: {} wooden: {} DoorTypeMetalEnum: permissible_values: collapsible: {} corrugated steel: {} hollow: {} rolling shutters: {} steel plate: {} DrainageClassEnum: permissible_values: excessively drained: {} moderately well: {} poorly: {} somewhat poorly: {} very poorly: {} well: {} DrawingsEnum: permissible_values: as built: {} bid: {} building navigation map: {} construction: {} design: {} diagram: {} operation: {} sketch: {} FaoClassEnum: permissible_values: Acrisols: {} Alisols: {} Andosols: {} Anthrosols: {} Arenosols: {} Calcisols: {} Cambisols: {} Chernozems: {} Cryosols: {} Durisols: {} Ferralsols: {} Fluvisols: {} Gleysols: {} Greyzems: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Gypsisols: {} Histosols: {} Kastanozems: {} Lithosols: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Leptosols: {} Lixisols: {} Luvisols: {} Nitosols: {} Phaeozems: {} Planosols: {} Plinthosols: {} Podzols: {} Podzoluvisols: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Rankers: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Regosols: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Rendzinas: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 Solonchaks: {} Solonetz: {} Stagnosols: {} Technosols: {} Umbrisols: {} Vertisols: {} Yermosols: deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696 FilterTypeEnum: permissible_values: HEPA: {} chemical air filter: {} electrostatic: {} gas-phase or ultraviolet air treatments: {} low-MERV pleated media: {} particulate air filter: {} FireplaceTypeEnum: permissible_values: gas burning: {} wood burning: {} FloorStrucEnum: permissible_values: balcony: {} concrete: {} floating floor: {} glass floor: {} raised floor: {} sprung floor: {} wood-framed: {} FloorWaterMoldEnum: permissible_values: bulging walls: {} ceiling discoloration: {} condensation: {} floor discoloration: {} mold odor: {} peeling paint or wallpaper: {} wall discoloration: {} water stains: {} wet floor: {} FreqCleanEnum: permissible_values: Annually: {} Daily: {} Monthly: {} Quarterly: {} Weekly: {} other: {} FurnitureEnum: permissible_values: cabinet: {} chair: {} desks: {} GenderRestroomEnum: permissible_values: all gender: {} female: {} gender neutral: {} male: {} male and female: {} unisex: {} GeolAgeEnum: permissible_values: Archean: {} Cambrian: {} Carboniferous: {} Cenozoic: {} Cretaceous: {} Devonian: {} Jurassic: {} Mesozoic: {} Neogene: {} Ordovician: {} Paleogene: {} Paleozoic: {} Permian: {} Precambrian: {} Proterozoic: {} Silurian: {} Triassic: {} other: {} GrowthHabitEnum: permissible_values: erect: {} prostrate: {} semi-erect: {} spreading: {} HandidnessEnum: permissible_values: ambidexterity: {} left handedness: {} mixed-handedness: {} right handedness: {} HcProducedEnum: permissible_values: Bitumen: {} Coalbed Methane: {} Gas: {} Gas-Condensate: {} Oil: {} other: {} HcrEnum: permissible_values: Coalbed: {} Gas Reservoir: {} Oil Reservoir: {} Oil Sand: {} Shale: {} Tight Gas Reservoir: {} Tight Oil Reservoir: {} other: {} HeatCoolTypeEnum: permissible_values: forced air system: {} heat pump: {} radiant system: {} steam forced heat: {} wood stove: {} HeatSysDelivMethEnum: permissible_values: conductive: {} radiant: {} IndoorSpaceEnum: permissible_values: bathroom: {} bedroom: {} elevator: {} foyer: {} hallway: {} kitchen: {} locker room: {} office: {} IndoorSurfEnum: permissible_values: cabinet: {} ceiling: {} counter top: {} door: {} shelving: {} vent cover: {} wall: {} window: {} LightTypeEnum: permissible_values: desk lamp: {} electric light: {} fluorescent lights: {} natural light: {} none: {} LithologyEnum: permissible_values: Basement: {} Chalk: {} Chert: {} Coal: {} Conglomerate: {} Diatomite: {} Dolomite: {} Limestone: {} Sandstone: {} Shale: {} Siltstone: {} Volcanic: {} other: {} MechStrucEnum: permissible_values: boat: {} bus: {} car: {} carriage: {} coach: {} elevator: {} escalator: {} subway: {} train: {} MoldVisibilityEnum: permissible_values: no presence of mold visible: {} presence of mold visible: {} OccupDocumentEnum: permissible_values: automated count: {} estimate: {} manual count: {} videos: {} OxyStatSampEnum: permissible_values: aerobic: {} anaerobic: {} other: {} PlantSexEnum: permissible_values: Androdioecious: {} Androecious: {} Androgynomonoecious: {} Androgynous: {} Andromonoecious: {} Bisexual: {} Dichogamous: {} Diclinous: {} Dioecious: {} Gynodioecious: {} Gynoecious: {} Gynomonoecious: {} Hermaphroditic: {} Imperfect: {} Monoclinous: {} Monoecious: {} Perfect: {} Polygamodioecious: {} Polygamomonoecious: {} Polygamous: {} Protandrous: {} Protogynous: {} Subandroecious: {} Subdioecious: {} Subgynoecious: {} Synoecious: {} Trimonoecious: {} Trioecious: {} Unisexual: {} ProfilePositionEnum: permissible_values: backslope: {} footslope: {} shoulder: {} summit: {} toeslope: {} QuadPosEnum: permissible_values: East side: {} North side: {} South side: {} West side: {} RelSampLocEnum: permissible_values: center of car: {} edge of car: {} under a seat: {} RoomCondtEnum: permissible_values: damaged: {} needs repair: {} new: {} rupture: {} visible signs of mold/mildew: {} visible wear: {} RoomConnectedEnum: permissible_values: attic: {} bathroom: {} closet: {} conference room: {} elevator: {} examining room: {} hallway: {} kitchen: {} mail room: {} office: {} stairwell: {} RoomLocEnum: permissible_values: corner room: {} exterior wall: {} interior room: {} RoomSampPosEnum: permissible_values: center: {} east corner: {} north corner: {} northeast corner: {} northwest corner: {} south corner: {} southeast corner: {} southwest corner: {} west corner: {} SampCaptStatusEnum: permissible_values: active surveillance in response to an outbreak: {} active surveillance not initiated by an outbreak: {} farm sample: {} market sample: {} other: {} SampCollectPointEnum: permissible_values: drilling rig: {} other: {} separator: {} storage tank: {} test well: {} well: {} wellhead: {} SampDisStageEnum: permissible_values: dissemination: {} growth and reproduction: {} infection: {} inoculation: {} other: {} penetration: {} SampSubtypeEnum: permissible_values: biofilm: {} not applicable: {} oil phase: {} other: {} water phase: {} SampWeatherEnum: permissible_values: clear sky: {} cloudy: {} foggy: {} hail: {} rain: {} sleet: {} snow: {} sunny: {} windy: {} SeasonEnum: permissible_values: autumn [NCIT:C94733]: meaning: NCIT:C94733 spring [NCIT:C94731]: meaning: NCIT:C94731 summer [NCIT:C94732]: meaning: NCIT:C94732 winter [NCIT:C94730]: meaning: NCIT:C94730 SeasonUseEnum: permissible_values: Fall: {} Spring: {} Summer: {} Winter: {} SedimentTypeEnum: permissible_values: biogenous: {} cosmogenous: {} hydrogenous: {} lithogenous: {} SeqQualityCheckEnum: permissible_values: manually edited: {} none: {} ShadingDeviceLocEnum: permissible_values: exterior: {} interior: {} ShadingDeviceTypeEnum: permissible_values: bahama shutters: {} exterior roll blind: {} gambrel awning: {} hood awning: {} porchroller awning: {} sarasota shutters: {} slatted aluminum: {} solid aluminum awning: {} sun screen: {} tree: {} trellis: {} venetian awning: {} SoilHorizonEnum: see_also: - https://www.nrcs.usda.gov/resources/education-and-teaching-materials/a-soil-profile - https://www.ffa.org/ag-101/ag-101-soil-horizons/ - https://soil.evs.buffalo.edu/index.php/Soil_Horizons - https://en.wikipedia.org/wiki/Soil_horizon - https://en.wikipedia.org/wiki/Permafrost permissible_values: A horizon: description: The surface horizon, also called topsoil. It has a defined soil structure, and is mostly made up of humus (decayed organic matter). B horizon: description: Also known as the subsoil. It is greatly composed of material illuviated (washed in from) layers above it. It is typically denser than the A horizon and has a clayey texture. C horizon: description: Also known as the substratum is unconsolidated material deepest in the pit and closest to the bedrock. E horizon: description: Used to refer to subsurface horizons that have undergone a significant loss of minerals, also known as Eluviation (or leaching). O horizon: description: The organic horizon. Typically at the top of the soil structure and is made up of mostly organic matter. meaning: http://purl.obolibrary.org/obo/ENVO_03600018 Permafrost: description: Soil that continuously remains below 0 °C (32 °F) for two years or more. R layer: description: Hard bedrock, which is usually the lowest layer. It is characterized by tightly bound and unbreakable materials. aliases: - R horizon M horizon: {} SpaceTypStateEnum: permissible_values: typically occupied: {} typically unoccupied: {} SpecificEnum: permissible_values: as built: {} bid: {} construction: {} design: {} operation: {} photos: {} SrDepEnvEnum: permissible_values: Fluvioldeltaic: {} Fluviomarine: {} Lacustine: {} Marine: {} other: {} SrKerogTypeEnum: permissible_values: Type I: {} Type II: {} Type III: {} Type IV: {} other: {} SrLithologyEnum: permissible_values: Biosilicieous: {} Carbonate: {} Clastic: {} Coal: {} other: {} SubstructureTypeEnum: permissible_values: basement: {} crawlspace: {} slab on grade: {} SurfAirContEnum: permissible_values: biocides: {} biological contaminants: {} dust: {} nutrients: {} organic matter: {} particulate matter: {} radon: {} volatile organic compounds: {} SurfMaterialEnum: permissible_values: adobe: {} carpet: {} cinder blocks: {} concrete: {} glass: {} hay bales: {} metal: {} paint: {} plastic: {} stainless steel: {} stone: {} stucco: {} tile: {} vinyl: {} wood: {} TidalStageEnum: permissible_values: ebb tide: {} flood tide: {} high tide: {} low tide: {} TillageEnum: permissible_values: chisel: {} cutting disc: {} disc plough: {} drill: {} mouldboard: {} ridge till: {} strip tillage: {} tined: {} zonal tillage: {} TrainLineEnum: permissible_values: green: {} orange: {} red: {} TrainStatLocEnum: permissible_values: forest hills: {} riverside: {} south station above ground: {} south station amtrak: {} south station underground: {} TrainStopLocEnum: permissible_values: downtown: {} end: {} mid: {} WallConstTypeEnum: permissible_values: fire resistive: {} frame construction: {} joisted masonry: {} light noncombustible: {} masonry noncombustible: {} modified fire resistive: {} WallFinishMatEnum: permissible_values: acoustical treatment: {} gypsum board: {} gypsum plaster: {} masonry: {} metal: {} plaster: {} stone facing: {} terrazzo: {} tile: {} veneer plaster: {} wood: {} WallSurfTreatmentEnum: permissible_values: fabric: {} no treatment: {} painted: {} paneling: {} stucco: {} wall paper: {} WaterFeatTypeEnum: permissible_values: fountain: {} pool: {} standing feature: {} stream: {} waterfall: {} WeekdayEnum: permissible_values: Friday: {} Monday: {} Saturday: {} Sunday: {} Thursday: {} Tuesday: {} Wednesday: {} WindowCoverEnum: permissible_values: blinds: {} curtains: {} none: {} WindowHorizPosEnum: permissible_values: left: {} middle: {} right: {} WindowMatEnum: permissible_values: clad: {} fiberglass: {} metal: {} vinyl: {} wood: {} WindowStatusEnum: permissible_values: closed: {} open: {} WindowTypeEnum: permissible_values: fixed window: {} horizontal sash window: {} single-hung sash window: {} WindowVertPosEnum: permissible_values: bottom: {} high: {} low: {} middle: {} top: {} HostSexEnum: permissible_values: female: {} hermaphrodite: {} non-binary: {} male: {} transgender: {} transgender (female to male): {} transgender (male to female): {} undeclared: {} CurLandUseEnum: permissible_values: badlands: {} cities: {} conifers: annotations: originally: conifers (e.g. pine,spruce,fir,cypress) examples: - value: cypress - value: fir - value: pine - value: spruce crop trees: annotations: originally: crop trees (nuts,fruit,christmas trees,nursery trees) examples: - value: christmas trees - value: fruit - value: nursery trees - value: nuts farmstead: {} gravel: {} hardwoods: annotations: originally: hardwoods (e.g. oak,hickory,elm,aspen) examples: - value: aspen - value: elm - value: hickory - value: oak hayland: {} horticultural plants: annotations: originally: horticultural plants (e.g. tulips) examples: - value: tulips industrial areas: {} intermixed hardwood and conifers: {} marshlands: annotations: originally: marshlands (grass,sedges,rushes) examples: - value: grass - value: rushes - value: sedgees meadows: annotations: originally: meadows (grasses,alfalfa,fescue,bromegrass,timothy) examples: - value: alfalfa - value: bromegrass - value: fescue - value: grasses - value: timothy mines/quarries: {} mudflats: {} oil waste areas: {} pastureland: annotations: originally: pastureland (grasslands used for livestock grazing) comments: - grasslands used for livestock grazing permanent snow or ice: {} rainforest: annotations: originally: rainforest (evergreen forest receiving greater than 406 cm annual rainfall) comments: - evergreen forest receiving greater than 406 cm annual rainfall rangeland: {} roads/railroads: {} rock: {} row crops: {} saline seeps: {} salt flats: {} sand: {} shrub crops: annotations: originally: shrub crops (blueberries,nursery ornamentals,filberts) examples: - value: blueberries - value: filberts - value: nursery ornamentals shrub land: annotations: originally: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) examples: - value: creosote bush - value: eucalyptus - value: mesquite - value: sage-brush - value: shrub oak small grains: {} successional shrub land: annotations: originally: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries) examples: - value: blackberries - value: chokecherry - value: hazels - value: shrub dogwoods - value: sumacs - value: tree saplings swamp: annotations: originally: swamp (permanent or semi-permanent water body dominated by woody plants) comments: - permanent or semi-permanent water body dominated by woody plants tropical: annotations: originally: tropical (e.g. mangrove,palms) examples: - value: mangrove - value: palms tundra: annotations: originally: tundra (mosses,lichens) examples: - value: lichens - value: mosses vegetable crops: {} vine crops: annotations: originally: vine crops (grapes) examples: - value: grapes TargetGeneEnum: permissible_values: 16S_rRNA: description: the small subunit of the bacterial/archean ribosome aliases: - 16S rRNA - 16S ribosomal RNA narrow_mappings: - OBI:0002763 23S_rRNA: aliases: - 23S rRNA - 23S ribosomal RNA description: the large subunit of the bacterial/archean ribosome 18S_rRNA: aliases: - 18S rRNA - 18S ribosomal RNA description: the small subunit of the eukaryotic ribosome 28S_rRNA: aliases: - 28S rRNA - 28S ribosomal RNA description: the large subunit of the eukaryotic ribosome slots: abs_air_humidity: annotations: Preferred_unit: gram per gram, kilogram per kilogram, kilogram, pound, gram per cubic meter, kilogram per cubic meter, percent storage_units: '[lb_av]|g/g|kg|kg/kg' description: Actual mass of water vapor present in the air water vapor mixture. title: absolute air humidity comments: - Can be calculated via mass of water vapor divided by the volume of the air and water vapor mixture. examples: - value: 9 g/g keywords: - absolute - air - humidity slot_uri: MIXS:0000122 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true add_recov_method: description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If "other" is specified, please propose entry in "additional info" field title: secondary and tertiary recovery methods and start date examples: - value: Polymer Addition;2018-06-21T14:30Z keywords: - date - method - recover - secondary - start slot_uri: MIXS:0001009 structured_pattern: syntax: ^({add_recov_methods});{date_time_stamp}$ interpolated: true partial_match: true additional_info: description: Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary title: additional info keywords: - information slot_uri: MIXS:0000300 range: TextValue address: description: The street name and building number where the sampling occurred title: address slot_uri: MIXS:0000218 structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true adj_room: description: List of rooms (room number, room name) immediately adjacent to the sampling room title: adjacent rooms keywords: - adjacent - room slot_uri: MIXS:0000219 range: TextValue structured_pattern: syntax: ^{room_name};{room_number}$ interpolated: true partial_match: true aero_struc: description: Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together title: aerospace structure examples: - value: plane slot_uri: MIXS:0000773 range: AeroStrucEnum agrochem_addition: annotations: Preferred_unit: gram, mole per liter, milligram per liter description: Addition of fertilizers, pesticides, etc. - amount and time of applications title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 keywords: - history slot_uri: MIXS:0000639 multivalued: true structured_pattern: syntax: ^{agrochemical_name};{amount} {unit};{date_time_stamp}$ interpolated: true partial_match: true range: TextValue inlined_as_list: true air_PM_concen: description: Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM title: air particulate matter concentration examples: - value: PM2.5;10 microgram per cubic meter keywords: - air - concentration - particle - particulate slot_uri: MIXS:0000108 multivalued: true structured_pattern: syntax: ^{particulate_matter_name};{float} {unit}$ interpolated: true partial_match: true inlined_as_list: true air_temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: Temperature of the air at the time of sampling title: air temperature examples: - value: 20 Cel keywords: - air - temperature slot_uri: MIXS:0000124 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true air_temp_regm: annotations: Expected_value: temperature value;treatment interval and duration Preferred_unit: degree Celsius description: Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - air - regimen - temperature string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000551 multivalued: true range: TextValue inlined_as_list: true al_sat: annotations: Preferred_unit: percentage storage_units: '%' description: Aluminum saturation (esp. For tropical soils) title: extreme_unusual_properties/Al saturation keywords: - extreme - properties - saturation - unusual slot_uri: MIXS:0000607 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true al_sat_meth: description: Reference or method used in determining Al saturation title: extreme_unusual_properties/Al saturation method keywords: - extreme - method - properties - saturation - unusual slot_uri: MIXS:0000324 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true alkalinity: annotations: Preferred_unit: milliequivalent per liter, milligram per liter storage_units: meq/L|mg/L description: Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate title: alkalinity examples: - value: 50 mg/L keywords: - alkalinity slot_uri: MIXS:0000421 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true alkalinity_method: description: Method used for alkalinity measurement title: alkalinity method examples: - value: titration keywords: - alkalinity - method slot_uri: MIXS:0000298 range: string alkyl_diethers: description: Concentration of alkyl diethers title: alkyl diethers examples: - value: 0.005 mol/L slot_uri: MIXS:0000490 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: mol/L alt: annotations: Preferred_unit: meter storage_units: m description: Heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air title: altitude examples: - value: 100 m slot_uri: MIXS:0000094 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true aminopept_act: annotations: Preferred_unit: mole per liter per hour storage_units: mol/L/h description: Measurement of aminopeptidase activity title: aminopeptidase activity examples: - value: 0.269 mol/L/h slot_uri: MIXS:0000172 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ammonium: annotations: Preferred_unit: micromole per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|umol/L' description: Concentration of ammonium in the sample title: ammonium examples: - value: 1.5 mg/L slot_uri: MIXS:0000427 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true amount_light: annotations: Preferred_unit: lux, lumens per square meter storage_units: lm/m2|lx description: The unit of illuminance and luminous emittance, measuring luminous flux per unit area title: amount of light keywords: - light slot_uri: MIXS:0000140 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ances_data: description: Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B) title: ancestral data examples: - value: A/3*B slot_uri: MIXS:0000247 range: TextValue annual_precpt: annotations: Preferred_unit: millimeter storage_units: mm description: The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps title: mean annual precipitation keywords: - mean slot_uri: MIXS:0000644 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 225 mm annual_temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: Mean annual temperature title: mean annual temperature examples: - value: 12.5 Cel keywords: - mean - temperature slot_uri: MIXS:0000642 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true antibiotic_regm: annotations: Expected_value: antibiotic name;antibiotic amount;treatment interval and duration Preferred_unit: milligram description: Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens title: antibiotic regimen examples: - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000553 multivalued: true range: TextValue inlined_as_list: true api: annotations: Preferred_unit: degrees API units_alignment_excuse: non_ucum_unit description: 'API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1 API)' title: API gravity examples: - value: 31.1 API slot_uri: MIXS:0000157 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true arch_struc: description: An architectural structure is a human-made, free-standing, immobile outdoor construction title: architectural structure examples: - value: shed slot_uri: MIXS:0000774 range: ArchStrucEnum aromatics_pc: annotations: Preferred_unit: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: aromatics wt% slot_uri: MIXS:0000133 range: TextValue recommended: true structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true asphaltenes_pc: annotations: Preferred_unit: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: asphaltenes wt% slot_uri: MIXS:0000135 range: TextValue recommended: true structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true atmospheric_data: annotations: Expected_value: atmospheric data name;measurement value description: Measurement of atmospheric data; can include multiple data title: atmospheric data examples: - value: wind speed;9 knots string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0001097 multivalued: true range: TextValue inlined_as_list: true avg_dew_point: annotations: Preferred_unit: degree Celsius storage_units: Cel description: The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day title: average dew point examples: - value: 25.5 Cel keywords: - average slot_uri: MIXS:0000141 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true avg_occup: description: Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room title: average daily occupancy keywords: - average slot_uri: MIXS:0000775 range: TextValue avg_temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day title: average temperature examples: - value: 12.5 Cel keywords: - average - temperature slot_uri: MIXS:0000142 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bac_prod: annotations: Preferred_unit: milligram per cubic meter per day storage_units: mg/m3/d description: Bacterial production in the water column measured by isotope uptake title: bacterial production examples: - value: 5 mg/m3/d keywords: - production slot_uri: MIXS:0000683 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bac_resp: annotations: Preferred_unit: milligram per cubic meter per day, micromole oxygen per liter per hour storage_units: mg/m3/d|umol/L/h description: Measurement of bacterial respiration in the water column title: bacterial respiration examples: - value: 300 umol/L/h slot_uri: MIXS:0000684 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bacteria_carb_prod: description: Measurement of bacterial carbon production title: bacterial carbon production examples: - value: 50 ng/h keywords: - carbon - production slot_uri: MIXS:0000173 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: ng/h barometric_press: annotations: Preferred_unit: millibar storage_units: mbar description: Force per unit area exerted against a surface by the weight of air above that surface title: barometric pressure examples: - value: 1013 mbar keywords: - pressure slot_uri: MIXS:0000096 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true basin: description: Name of the basin (e.g. Campos) title: basin name examples: - value: Campos slot_uri: MIXS:0000290 range: TextValue bathroom_count: description: The number of bathrooms in the building title: bathroom count examples: - value: '1' keywords: - count slot_uri: MIXS:0000776 range: TextValue bedroom_count: description: The number of bedrooms in the building title: bedroom count examples: - value: '2' keywords: - count slot_uri: MIXS:0000777 range: TextValue benzene: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Concentration of benzene in the sample title: benzene slot_uri: MIXS:0000153 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true biochem_oxygen_dem: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period title: biochemical oxygen demand keywords: - oxygen slot_uri: MIXS:0000653 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true biocide: annotations: Expected_value: name;name;timestamp description: List of biocides (commercial name of product and supplier) and date of administration title: biocide administration examples: - value: ALPHA 1427;Baker Hughes;2008-01-23 keywords: - administration string_serialization: '{text};{text};{timestamp}' slot_uri: MIXS:0001011 recommended: true biocide_admin_method: annotations: Expected_value: measurement value;frequency;duration;duration Preferred_unit: milligram per liter description: Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days) title: biocide administration method keywords: - administration - method string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}' slot_uri: MIXS:0000456 recommended: true range: string biol_stat: description: The level of genome modification title: biological status examples: - value: natural keywords: - status slot_uri: MIXS:0000858 range: BiolStatEnum biomass: annotations: Expected_value: biomass type;measurement value Preferred_unit: ton, kilogram, gram description: Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements title: biomass examples: - value: total;20 gram keywords: - biomass string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000174 multivalued: true range: TextValue inlined_as_list: true biotic_regm: description: Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture keywords: - regimen slot_uri: MIXS:0001038 range: TextValue multivalued: false biotic_relationship: description: Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object title: observed biotic relationship examples: - value: free living keywords: - observed - relationship slot_uri: MIXS:0000028 range: BioticRelationshipEnum bishomohopanol: annotations: Preferred_unit: microgram per liter, microgram per gram storage_units: ug/L|ug/g description: Concentration of bishomohopanol title: bishomohopanol examples: - value: 14 ug/L slot_uri: MIXS:0000175 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true blood_press_diast: annotations: Preferred_unit: millimeter mercury storage_units: mm[Hg] description: Resting diastolic blood pressure, measured as mm mercury title: host blood pressure diastolic keywords: - host - host. - pressure slot_uri: MIXS:0000258 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true blood_press_syst: annotations: Preferred_unit: millimeter mercury storage_units: mm[Hg] description: Resting systolic blood pressure, measured as mm mercury title: host blood pressure systolic keywords: - host - host. - pressure slot_uri: MIXS:0000259 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true bromide: annotations: Preferred_unit: parts per million storage_units: '[ppm]' description: Concentration of bromide title: bromide examples: - value: 0.05 [ppm] slot_uri: MIXS:0000176 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true build_docs: description: The building design, construction and operation documents title: design, construction, and operation documents examples: - value: maintenance plans keywords: - documents slot_uri: MIXS:0000787 range: BuildDocsEnum build_occup_type: description: The primary function for which a building or discrete part of a building is intended to be used title: building occupancy type examples: - value: market keywords: - type slot_uri: MIXS:0000761 range: BuildOccupTypeEnum multivalued: true building_setting: description: A location (geography) where a building is set title: building setting examples: - value: rural slot_uri: MIXS:0000768 range: BuildingSettingEnum built_struc_age: annotations: Preferred_unit: year storage_units: a description: The age of the built structure since construction title: built structure age examples: - value: 15 a keywords: - age slot_uri: MIXS:0000145 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true built_struc_set: description: The characterization of the location of the built structure as high or low human density title: built structure setting examples: - value: rural slot_uri: MIXS:0000778 range: BuiltStrucSetEnum built_struc_type: description: A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads title: built structure type keywords: - type slot_uri: MIXS:0000721 range: TextValue calcium: annotations: Preferred_unit: milligram per liter, micromole per liter, parts per million storage_units: '[ppm]|mg/L|umol/L|mg/kg' description: Concentration of calcium in the sample title: calcium examples: - value: 0.2 umol/L slot_uri: MIXS:0000432 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true carb_dioxide: annotations: Preferred_unit: micromole per liter, parts per million storage_units: '[ppm]|umol/L' description: Carbon dioxide (gas) amount or concentration at the time of sampling title: carbon dioxide examples: - value: 410 [ppm] keywords: - carbon slot_uri: MIXS:0000097 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true carb_monoxide: annotations: Preferred_unit: micromole per liter, parts per million storage_units: '[ppm]|umol/L' description: Carbon monoxide (gas) amount or concentration at the time of sampling title: carbon monoxide examples: - value: 0.1 [ppm] keywords: - carbon slot_uri: MIXS:0000098 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true carb_nitro_ratio: annotations: Expected_value: measurement value storage_units: "1" description: Ratio of amount or concentrations of carbon to nitrogen title: carbon/nitrogen ratio examples: - value: '0.417361111' keywords: - carbon - nitrogen - ratio string_serialization: '{float}:{float}' slot_uri: MIXS:0000310 range: QuantityValue ceil_area: annotations: Preferred_unit: square meter storage_units: m2 description: The area of the ceiling space within the room title: ceiling area examples: - value: 25 m2 keywords: - area - ceiling slot_uri: MIXS:0000148 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ceil_cond: description: The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas title: ceiling condition examples: - value: damaged keywords: - ceiling - condition slot_uri: MIXS:0000779 range: DamagedEnum ceil_finish_mat: description: The type of material used to finish a ceiling title: ceiling finish material examples: - value: stucco keywords: - ceiling - material slot_uri: MIXS:0000780 range: CeilFinishMatEnum ceil_struc: description: The construction format of the ceiling title: ceiling structure examples: - value: concrete keywords: - ceiling slot_uri: MIXS:0000782 range: CeilStrucEnum ceil_texture: description: The feel, appearance, or consistency of a ceiling surface title: ceiling texture examples: - value: popcorn keywords: - ceiling - texture slot_uri: MIXS:0000783 range: CeilingWallTextureEnum ceil_thermal_mass: annotations: Preferred_unit: joule per degree Celsius storage_units: J/K description: The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow title: ceiling thermal mass keywords: - ceiling - mass slot_uri: MIXS:0000143 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ceil_type: description: The type of ceiling according to the ceiling's appearance or construction title: ceiling type examples: - value: coffered keywords: - ceiling - type slot_uri: MIXS:0000784 range: CeilTypeEnum ceil_water_mold: description: Signs of the presence of mold or mildew on the ceiling title: ceiling signs of water/mold examples: - value: presence of mold visible keywords: - ceiling slot_uri: MIXS:0000781 range: MoldVisibilityEnum chem_administration: annotations: Expected_value: CHEBI;timestamp description: List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi title: chemical administration examples: - value: agar [CHEBI:2509];2018-05-11T20:00Z keywords: - administration string_serialization: '{termLabel} [{termID}];{timestamp}' slot_uri: MIXS:0000751 multivalued: true range: ControlledTermValue inlined_as_list: true chem_mutagen: annotations: Expected_value: mutagen name;mutagen amount;treatment interval and duration Preferred_unit: milligram per liter description: Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000555 multivalued: true range: TextValue inlined_as_list: true chem_oxygen_dem: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite title: chemical oxygen demand keywords: - oxygen slot_uri: MIXS:0000656 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true chem_treat_method: annotations: Expected_value: measurement value;frequency;duration;duration Preferred_unit: milligram per liter description: Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days) title: chemical treatment method keywords: - method - treatment string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}' slot_uri: MIXS:0000457 range: string chem_treatment: annotations: Expected_value: name;name;timestamp description: List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included title: chemical treatment examples: - value: ACCENT 1125;DOW;2010-11-17 keywords: - treatment string_serialization: '{text};{text};{timestamp}' slot_uri: MIXS:0001012 chimera_check: description: Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences title: chimera check software examples: - value: uchime;v4.1;default parameters keywords: - software slot_uri: MIXS:0000052 range: TextValue structured_pattern: syntax: ^{software};{version};{parameters}$ interpolated: true partial_match: true chloride: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Concentration of chloride in the sample title: chloride examples: - value: 5000 mg/L slot_uri: MIXS:0000429 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true chlorophyll: annotations: Preferred_unit: milligram per cubic meter, microgram per liter storage_units: mg/m3|ug/L description: Concentration of chlorophyll title: chlorophyll examples: - value: 5 mg/m3 slot_uri: MIXS:0000177 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true climate_environment: description: Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates title: climate environment deprecated: true, slot is inconsistently used and provides redundant information to other slots, https://github.com/GenomicsStandardsConsortium/mixs/issues/591 and https://github.com/microbiomedata/nmdc-schema/issues/586 examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - environment slot_uri: MIXS:0001040 range: TextValue multivalued: true inlined_as_list: true collection_date: description: 'The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant' title: collection date examples: - value: '2013-03-25T12:42:31+01:00' keywords: - date slot_uri: MIXS:0000011 range: TimestampValue conduc: annotations: Preferred_unit: milliSiemens per centimeter storage_units: mS/cm|uS/cm description: Electrical conductivity of water title: conductivity examples: - value: 10 uS/cm slot_uri: MIXS:0000692 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true cool_syst_id: description: The cooling system identifier title: cooling system identifier examples: - value: '12345' keywords: - identifier slot_uri: MIXS:0000785 range: TextValue crop_rotation: annotations: Expected_value: crop rotation status;schedule description: Whether or not crop is rotated, and if yes, rotation schedule title: history/crop rotation examples: - value: yes;R2/2017-01-01/2018-12-31/P6M keywords: - history slot_uri: MIXS:0000318 range: TextValue cult_root_med: description: Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors title: culture rooting medium examples: - value: http://himedialabs.com/TD/PT158.pdf keywords: - culture slot_uri: MIXS:0001041 structured_pattern: syntax: ^({text}|{PMID}|{DOI}|{URL})$ interpolated: true range: TextValue cur_land_use: annotations: Expected_value: enumeration description: Present state of sample site title: current land use examples: - value: conifers keywords: - land - use string_serialization: '[cities|farmstead|industrial areas|roads/railroads|rock|sand|gravel|mudflats|salt flats|badlands|permanent snow or ice|saline seeps|mines/quarries|oil waste areas|small grains|row crops|vegetable crops|horticultural plants (e.g. tulips)|marshlands (grass,sedges,rushes)|tundra (mosses,lichens)|rangeland|pastureland (grasslands used for livestock grazing)|hayland|meadows (grasses,alfalfa,fescue,bromegrass,timothy)|shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)|successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)|shrub crops (blueberries,nursery ornamentals,filberts)|vine crops (grapes)|conifers (e.g. pine,spruce,fir,cypress)|hardwoods (e.g. oak,hickory,elm,aspen)|intermixed hardwood and conifers|tropical (e.g. mangrove,palms)|rainforest (evergreen forest receiving >406 cm annual rainfall)|swamp (permanent or semi-permanent water body dominated by woody plants)|crop trees (nuts,fruit,christmas trees,nursery trees)]' slot_uri: MIXS:0001080 cur_vegetation: annotations: Expected_value: current vegetation type description: Vegetation classification from one or more standard classification systems, or agricultural crop title: current vegetation keywords: - vegetation slot_uri: MIXS:0000312 range: TextValue cur_vegetation_meth: description: Reference or method used in vegetation classification title: current vegetation method keywords: - method - vegetation slot_uri: MIXS:0000314 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true date_last_rain: description: The date of the last time it rained title: date last rain examples: - value: '2013-03-25T12:42:31+01:00' keywords: - date - rain slot_uri: MIXS:0000786 range: TimestampValue density: annotations: Preferred_unit: gram per cubic meter, gram per cubic centimeter storage_units: g/cm3|g/m3|kg/m3 description: Density of the sample, which is its mass per unit volume (aka volumetric mass density) title: density examples: - value: 1000 kg/m3 keywords: - density slot_uri: MIXS:0000435 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true depos_env: description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If "other" is specified, please propose entry in "additional info" field title: depositional environment keywords: - environment slot_uri: MIXS:0000992 range: DeposEnvEnum recommended: true depth: annotations: Preferred_unit: meter storage_units: m description: The vertical distance below local surface. For sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples title: depth keywords: - depth slot_uri: MIXS:0000018 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 10 m dew_point: annotations: Preferred_unit: degree Celsius storage_units: Cel description: The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water title: dew point examples: - value: 22 Cel slot_uri: MIXS:0000129 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diether_lipids: annotations: Expected_value: diether lipid name;measurement value Preferred_unit: nanogram per liter description: Concentration of diether lipids; can include multiple types of diether lipids title: diether lipids examples: - value: 0.2 nanogram per liter string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000178 multivalued: true range: TextValue inlined_as_list: true diss_carb_dioxide: annotations: Preferred_unit: micromole per liter, milligram per liter storage_units: mg/L|umol/L description: Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample title: dissolved carbon dioxide examples: - value: 5 mg/L keywords: - carbon - dissolved slot_uri: MIXS:0000436 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_hydrogen: annotations: Preferred_unit: micromole per liter storage_units: umol/L description: Concentration of dissolved hydrogen title: dissolved hydrogen examples: - value: 0.3 umol/L keywords: - dissolved slot_uri: MIXS:0000179 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_inorg_carb: annotations: Preferred_unit: microgram per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|ug/L|umol/kg' description: Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter title: dissolved inorganic carbon examples: - value: 2059 umol/kg keywords: - carbon - dissolved - inorganic slot_uri: MIXS:0000434 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_inorg_nitro: annotations: Preferred_unit: microgram per liter, micromole per liter storage_units: ug/L|umol/L|mg/L description: Concentration of dissolved inorganic nitrogen title: dissolved inorganic nitrogen examples: - value: 761 umol/L keywords: - dissolved - inorganic - nitrogen slot_uri: MIXS:0000698 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_inorg_phosp: description: Concentration of dissolved inorganic phosphorus in the sample title: dissolved inorganic phosphorus examples: - value: 56.5 umol/L keywords: - dissolved - inorganic - phosphorus slot_uri: MIXS:0000106 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: '[ppm]|mg/L|ug/L|umol/L' diss_iron: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: Concentration of dissolved iron in the sample title: dissolved iron keywords: - dissolved slot_uri: MIXS:0000139 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_org_carb: annotations: Preferred_unit: micromole per liter, milligram per liter storage_units: mg/L|umol/L|ug/L description: Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid title: dissolved organic carbon examples: - value: 197 umol/L keywords: - carbon - dissolved - organic slot_uri: MIXS:0000433 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_org_nitro: description: Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2 title: dissolved organic nitrogen examples: - value: 0.05 mg/L keywords: - dissolved - nitrogen - organic slot_uri: MIXS:0000162 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: mg/L|ug/L diss_oxygen: annotations: Preferred_unit: micromole per kilogram, milligram per liter storage_units: mg/L|umol/kg|umol/L description: Concentration of dissolved oxygen title: dissolved oxygen examples: - value: 175 umol/L keywords: - dissolved - oxygen slot_uri: MIXS:0000119 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true diss_oxygen_fluid: annotations: Preferred_unit: micromole per kilogram, milligram per liter storage_units: mg/L|umol/kg description: Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxygen-corrosion and microbial activity (e.g. Mic) title: dissolved oxygen in fluids keywords: - dissolved - oxygen slot_uri: MIXS:0000438 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true door_comp_type: description: The composite type of the door title: door type, composite examples: - value: revolving keywords: - door - type slot_uri: MIXS:0000795 range: DoorCompTypeEnum door_cond: description: The physical condition of the door title: door condition examples: - value: new keywords: - condition - door slot_uri: MIXS:0000788 range: DamagedRupturedEnum door_direct: description: The direction the door opens title: door direction of opening examples: - value: inward keywords: - direction - door slot_uri: MIXS:0000789 range: DoorDirectEnum door_loc: description: The relative location of the door in the room title: door location examples: - value: north keywords: - door - location slot_uri: MIXS:0000790 range: CompassDirections8Enum door_mat: description: The material the door is composed of title: door material examples: - value: wood keywords: - door - material slot_uri: MIXS:0000791 range: DoorMatEnum door_move: description: The type of movement of the door title: door movement examples: - value: swinging keywords: - door slot_uri: MIXS:0000792 range: DoorMoveEnum door_size: annotations: Preferred_unit: square meter storage_units: m2 description: The size of the door title: door area or size examples: - value: 2.5 m2 keywords: - area - door - size slot_uri: MIXS:0000158 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true door_type: description: The type of door material title: door type examples: - value: wooden keywords: - door - type slot_uri: MIXS:0000794 range: DoorTypeEnum door_type_metal: description: The type of metal door title: door type, metal examples: - value: hollow keywords: - door - type slot_uri: MIXS:0000796 range: DoorTypeMetalEnum door_type_wood: annotations: Expected_value: enumeration description: The type of wood door title: door type, wood examples: - value: battened keywords: - door - type string_serialization: '[bettened and ledged|battened|ledged and braced|battened|ledged and framed|battened|ledged, braced and frame|framed and paneled|glashed or sash|flush|louvered|wire gauged]' slot_uri: MIXS:0000797 door_water_mold: description: Signs of the presence of mold or mildew on a door title: door signs of water/mold examples: - value: presence of mold visible keywords: - door slot_uri: MIXS:0000793 range: MoldVisibilityEnum down_par: annotations: Preferred_unit: microEinstein per square meter per second, microEinstein per square centimeter per second storage_units: umol/m2/s description: Visible waveband radiance and irradiance measurements in the water column title: downward PAR examples: - value: 28.71 umol/m2/s slot_uri: MIXS:0000703 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true drainage_class: description: Drainage classification from a standard system such as the USDA system title: drainage classification examples: - value: well keywords: - classification slot_uri: MIXS:0001085 range: DrainageClassEnum drawings: description: The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents title: drawings examples: - value: sketch keywords: - drawings slot_uri: MIXS:0000798 range: DrawingsEnum efficiency_percent: annotations: Preferred_unit: micromole per liter units_alignment_excuse: mixs_inconsistent description: Percentage of volatile solids removed from the anaerobic digestor title: efficiency percent keywords: - percent slot_uri: MIXS:0000657 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true elev: annotations: Preferred_unit: meter description: Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit title: elevation examples: - value: 100 meter keywords: - elevation slot_uri: MIXS:0000093 range: float structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true elevator: description: The number of elevators within the built structure title: elevator count examples: - value: '2' keywords: - count slot_uri: MIXS:0000799 range: TextValue emulsions: annotations: Expected_value: emulsion name;measurement value Preferred_unit: gram per liter description: Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types title: emulsions string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000660 multivalued: true range: TextValue inlined_as_list: true env_broad_scale: description: 'Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS' title: broad-scale environmental context keywords: - context - environmental slot_uri: MIXS:0000012 range: ControlledIdentifiedTermValue structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true is_a: mixs_env_triad_field examples: - value: oceanic epipelagic zone biome [ENVO:01000035] annotations: tooltip: The biome or major environmental system where the sample or specimen originated. Choose values from subclasses of the 'biome' class [ENVO:00000428] in the Environment Ontology (ENVO). For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to describe the broad anatomical or morphological context env_local_scale: annotations: Expected_value: Environmental entities having causal influences upon the entity at time of sampling tooltip: The specific environmental entities or features near the sample or specimen that significantly influence its characteristics or composition. These entities are typically smaller in scale than the broad environmental context. Values for this field should be countable, material nouns and must be chosen from subclasses of BFO:0000040 (material entity) that appear in the Environment Ontology (ENVO). For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to describe specific anatomical structures or plant parts. description: 'Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS' title: local environmental context keywords: - context - environmental slot_uri: MIXS:0000013 structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true is_a: mixs_env_triad_field range: ControlledIdentifiedTermValue examples: - value: litter layer [ENVO:01000338] env_medium: description: 'Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)' title: environmental medium keywords: - environmental slot_uri: MIXS:0000014 range: ControlledIdentifiedTermValue structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true is_a: mixs_env_triad_field examples: - value: soil [ENVO:00001998] annotations: tooltip: The predominant environmental material or substrate that directly surrounds or hosts the sample or specimen at the time of sampling. Choose values from subclasses of the 'environmental material' class [ENVO:00010483] in the Environment Ontology (ENVO). Values for this field should be measurable or mass material nouns, representing continuous environmental materials. For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to indicate a tissue, organ, or plant structure escalator: description: The number of escalators within the built structure title: escalator count examples: - value: '4' keywords: - count slot_uri: MIXS:0000800 range: TextValue ethylbenzene: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Concentration of ethylbenzene in the sample title: ethylbenzene slot_uri: MIXS:0000155 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true exp_duct: annotations: Preferred_unit: square meter storage_units: m2 description: The amount of exposed ductwork in the room title: exposed ductwork slot_uri: MIXS:0000144 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true exp_pipe: description: The number of exposed pipes in the room title: exposed pipes keywords: - pipes slot_uri: MIXS:0000220 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: "1" experimental_factor: annotations: Expected_value: text or EFO and/or OBI description: Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI) title: experimental factor examples: - value: time series design [EFO:0001779] keywords: - experimental - factor string_serialization: '{termLabel} [{termID}]|{text}' slot_uri: MIXS:0000008 range: ControlledTermValue multivalued: false pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$ ext_door: description: The number of exterior doors in the built structure title: exterior door count keywords: - count - door - exterior slot_uri: MIXS:0000170 range: TextValue ext_wall_orient: description: The orientation of the exterior wall title: orientations of exterior wall examples: - value: northwest keywords: - exterior - wall slot_uri: MIXS:0000817 range: CompassDirections8Enum ext_window_orient: description: The compass direction the exterior window of the room is facing title: orientations of exterior window examples: - value: southwest keywords: - exterior - window slot_uri: MIXS:0000818 range: CompassDirections8Enum extreme_event: description: Unusual physical events that may have affected microbial populations title: history/extreme events keywords: - event - history slot_uri: MIXS:0000320 range: string fao_class: description: Soil classification from the FAO World soil distribution from International Soil Reference and Information Centre (ISRIC). The list of available soil classifications can be found at https://www.isric.org/explore/world-soil-distribution title: soil_taxonomic/FAO classification examples: - value: Luvisols keywords: - classification slot_uri: MIXS:0001083 range: FaoClassEnum fertilizer_regm: annotations: Expected_value: fertilizer name;fertilizer amount;treatment interval and duration Preferred_unit: gram, mole per liter, milligram per liter description: Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens title: fertilizer regimen examples: - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M keywords: - regimen string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000556 multivalued: true range: TextValue inlined_as_list: true field: description: Name of the hydrocarbon field (e.g. Albacora) title: field name slot_uri: MIXS:0000291 range: TextValue recommended: true filter_type: description: A device which removes solid particulates or airborne molecular contaminants title: filter type examples: - value: HEPA keywords: - filter - type slot_uri: MIXS:0000765 range: FilterTypeEnum multivalued: true fire: description: Historical and/or physical evidence of fire title: history/fire keywords: - history slot_uri: MIXS:0001086 range: string fireplace_type: description: A firebox with chimney title: fireplace type examples: - value: wood burning keywords: - type slot_uri: MIXS:0000802 range: FireplaceTypeEnum flooding: description: Historical and/or physical evidence of flooding title: history/flooding keywords: - history slot_uri: MIXS:0000319 range: string floor_age: annotations: Preferred_unit: years, weeks, days storage_units: a|d|wk description: The time period since installment of the carpet or flooring title: floor age keywords: - age - floor slot_uri: MIXS:0000164 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true floor_area: annotations: Preferred_unit: square meter storage_units: m2 description: The area of the floor space within the room title: floor area keywords: - area - floor slot_uri: MIXS:0000165 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true floor_cond: description: The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas title: floor condition examples: - value: new keywords: - condition - floor slot_uri: MIXS:0000803 range: DamagedEnum floor_count: description: The number of floors in the building, including basements and mechanical penthouse title: floor count keywords: - count - floor slot_uri: MIXS:0000225 range: TextValue floor_finish_mat: annotations: Expected_value: enumeration description: The floor covering type; the finished surface that is walked on title: floor finish material examples: - value: carpet keywords: - floor - material string_serialization: '[tile|wood strip or parquet|carpet|rug|laminate wood|lineoleum|vinyl composition tile|sheet vinyl|stone|bamboo|cork|terrazo|concrete|none;specify unfinished|sealed|clear finish|paint]' slot_uri: MIXS:0000804 floor_struc: description: Refers to the structural elements and subfloor upon which the finish flooring is installed title: floor structure examples: - value: concrete keywords: - floor slot_uri: MIXS:0000806 range: FloorStrucEnum floor_thermal_mass: annotations: Preferred_unit: joule per degree Celsius storage_units: J/K description: The ability of the floor to provide inertia against temperature fluctuations title: floor thermal mass keywords: - floor - mass slot_uri: MIXS:0000166 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true floor_water_mold: description: Signs of the presence of mold or mildew in a room title: floor signs of water/mold examples: - value: ceiling discoloration keywords: - floor slot_uri: MIXS:0000805 range: FloorWaterMoldEnum fluor: annotations: Preferred_unit: milligram chlorophyll a per cubic meter, volts storage_units: mg/m3|V description: Raw or converted fluorescence of water title: fluorescence examples: - value: 2.5 V slot_uri: MIXS:0000704 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true freq_clean: description: The number of times the sample location is cleaned per day. title: frequency of cleaning examples: - value: 2 1/d keywords: - frequency slot_uri: MIXS:0000226 range: QuantityValue annotations: storage_units: 1/d freq_cook: description: The number of times a meal is cooked per week title: frequency of cooking keywords: - frequency slot_uri: MIXS:0000227 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: 1/d fungicide_regm: annotations: Preferred_unit: gram, mole per liter, milligram per liter description: Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen slot_uri: MIXS:0000557 range: TextValue multivalued: true inlined_as_list: true furniture: description: The types of furniture present in the sampled room title: furniture examples: - value: chair slot_uri: MIXS:0000807 range: FurnitureEnum gaseous_environment: annotations: Preferred_unit: micromole per liter description: Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens title: gaseous environment examples: - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - environment slot_uri: MIXS:0000558 range: TextValue multivalued: true inlined_as_list: true gaseous_substances: annotations: Expected_value: gaseous substance name;measurement value Preferred_unit: micromole per liter description: Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances title: gaseous substances string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000661 multivalued: true range: TextValue inlined_as_list: true gender_restroom: description: The gender type of the restroom title: gender of restroom examples: - value: male slot_uri: MIXS:0000808 range: GenderRestroomEnum genetic_mod: description: Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection title: genetic modification examples: - value: PMID:19497774 slot_uri: MIXS:0000859 structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true geo_loc_name: description: The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ) title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' keywords: - geographic - location slot_uri: MIXS:0000010 range: TextValue structured_pattern: syntax: '^{country}: {region}, {specific_location}$' interpolated: true partial_match: true glucosidase_act: annotations: Preferred_unit: mol per liter per hour storage_units: mol/L/h description: Measurement of glucosidase activity title: glucosidase activity examples: - value: 5 mol/L/h slot_uri: MIXS:0000137 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true gravidity: description: Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used title: gravidity examples: - value: yes;due date:2018-05-11 string_serialization: '{boolean};{timestamp}' slot_uri: MIXS:0000875 range: TextValue gravity: annotations: Expected_value: gravity factor value;treatment interval and duration Preferred_unit: meter per square second, g description: Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000559 multivalued: true range: TextValue inlined_as_list: true growth_facil: annotations: Expected_value: free text or CO description: 'Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research' title: growth facility examples: - value: Growth chamber [CO_715:0000189] keywords: - facility - growth string_serialization: '{text}|{termLabel} [{termID}]' slot_uri: MIXS:0001043 range: ControlledTermValue growth_habit: description: Characteristic shape, appearance or growth form of a plant species title: growth habit examples: - value: spreading keywords: - growth slot_uri: MIXS:0001044 range: GrowthHabitEnum growth_hormone_regm: annotations: Expected_value: growth hormone name;growth hormone amount;treatment interval and duration Preferred_unit: gram, mole per liter, milligram per liter description: Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - growth - regimen string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000560 multivalued: true range: TextValue inlined_as_list: true hall_count: description: The total count of hallways and corridors in the built structure title: hallway/corridor count keywords: - corridor - count - hallway slot_uri: MIXS:0000228 range: TextValue handidness: description: The handidness of the individual sampled title: handidness examples: - value: right handedness slot_uri: MIXS:0000809 range: HandidnessEnum hc_produced: description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If "other" is specified, please propose entry in "additional info" field title: hydrocarbon type produced examples: - value: Gas keywords: - hydrocarbon - type slot_uri: MIXS:0000989 range: HcProducedEnum hcr: description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose entry in "additional info" field title: hydrocarbon resource type examples: - value: Oil Sand keywords: - hydrocarbon - resource - type slot_uri: MIXS:0000988 range: HcrEnum hcr_fw_salinity: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS title: formation water salinity keywords: - salinity - water slot_uri: MIXS:0000406 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true hcr_geol_age: description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field' title: hydrocarbon resource geological age examples: - value: Silurian keywords: - age - hydrocarbon - resource slot_uri: MIXS:0000993 range: GeolAgeEnum recommended: true hcr_pressure: annotations: Preferred_unit: atmosphere, kilopascal description: Original pressure of the hydrocarbon resource title: hydrocarbon resource original pressure keywords: - hydrocarbon - pressure - resource slot_uri: MIXS:0000395 range: TextValue structured_pattern: syntax: ^{float} *- *{float} {unit}$ interpolated: true partial_match: true hcr_temp: annotations: Preferred_unit: degree Celsius description: Original temperature of the hydrocarbon resource title: hydrocarbon resource original temperature examples: - value: 150-295 degree Celsius keywords: - hydrocarbon - resource - temperature slot_uri: MIXS:0000393 range: TextValue structured_pattern: syntax: ^{float} *- *{float} {unit}$ interpolated: true partial_match: true heat_cool_type: description: Methods of conditioning or heating a room or building title: heating and cooling system type examples: - value: heat pump keywords: - type slot_uri: MIXS:0000766 range: HeatCoolTypeEnum multivalued: true heat_deliv_loc: description: The location of heat delivery within the room title: heating delivery locations examples: - value: north keywords: - delivery - location - locations slot_uri: MIXS:0000810 range: CompassDirections8Enum heat_sys_deliv_meth: description: The method by which the heat is delivered through the system title: heating system delivery method examples: - value: radiant keywords: - delivery - method slot_uri: MIXS:0000812 range: string heat_system_id: description: The heating system identifier title: heating system identifier keywords: - identifier slot_uri: MIXS:0000833 range: TextValue heavy_metals: annotations: Expected_value: heavy metal name;measurement value unit Preferred_unit: microgram per gram description: Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field title: extreme_unusual_properties/heavy metals examples: - value: mercury;0.09 micrograms per gram keywords: - extreme - properties - unusual string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000652 multivalued: true range: TextValue inlined_as_list: true heavy_metals_meth: description: Reference or method used in determining heavy metals title: extreme_unusual_properties/heavy metals method keywords: - extreme - method - properties - unusual slot_uri: MIXS:0000343 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true inlined_as_list: true height_carper_fiber: annotations: Preferred_unit: centimeter storage_units: cm description: The average carpet fiber height in the indoor environment title: height carpet fiber mat keywords: - height slot_uri: MIXS:0000167 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true herbicide_regm: annotations: Preferred_unit: gram, mole per liter, milligram per liter description: Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen slot_uri: MIXS:0000561 range: TextValue multivalued: true inlined_as_list: true horizon_meth: description: Reference or method used in determining the horizon title: horizon method keywords: - horizon - method slot_uri: MIXS:0000321 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true host_age: annotations: Preferred_unit: year, day, hour storage_units: a|d|h description: Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees title: host age keywords: - age - host - host. slot_uri: MIXS:0000255 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 10 d host_body_habitat: description: Original body habitat where the sample was obtained from title: host body habitat keywords: - body - habitat - host - host. slot_uri: MIXS:0000866 range: TextValue host_body_product: annotations: Expected_value: FMA or UBERON description: Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. Use terms from the foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) title: host body product keywords: - body - host - host. - product string_serialization: '{termLabel} [{termID}]' slot_uri: MIXS:0000888 range: ControlledTermValue examples: - value: mucus [UBERON:0000912] host_body_site: annotations: Expected_value: FMA or UBERON description: Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). Use terms from the foundational model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON) title: host body site keywords: - body - host - site string_serialization: '{termLabel} [{termID}]' slot_uri: MIXS:0000867 range: ControlledTermValue host_body_temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: Core body temperature of the host when sample was collected title: host body temperature keywords: - body - host - host. - temperature slot_uri: MIXS:0000274 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 15 Cel host_color: description: The color of host title: host color keywords: - host - host. slot_uri: MIXS:0000260 range: TextValue host_common_name: annotations: Preferred_unit: '' description: Common name of the host title: host common name keywords: - host - host. slot_uri: MIXS:0000248 range: TextValue host_diet: description: Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types title: host diet keywords: - diet - host - host. slot_uri: MIXS:0000869 range: TextValue multivalued: true inlined_as_list: true host_disease_stat: annotations: Expected_value: disease name or Disease Ontology term description: List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text title: host disease status keywords: - disease - host - host. - status string_serialization: '{termLabel} [{termID}]|{text}' slot_uri: MIXS:0000031 host_dry_mass: annotations: Preferred_unit: kilogram, gram storage_units: g|kg description: Measurement of dry mass title: host dry mass examples: - value: 500 g keywords: - dry - host - host. - mass slot_uri: MIXS:0000257 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_genotype: description: Observed genotype title: host genotype keywords: - host - host. slot_uri: MIXS:0000365 range: TextValue host_growth_cond: description: Literature reference giving growth conditions of the host title: host growth conditions examples: - value: https://academic.oup.com/icesjms/article/68/2/349/617247 keywords: - condition - growth - host - host. slot_uri: MIXS:0000871 range: TextValue structured_pattern: syntax: ^({PMID}|{DOI}|{URL}|{text})$ interpolated: true partial_match: true host_height: annotations: Preferred_unit: centimeter, millimeter, meter storage_units: cm|m|mm description: The height of subject title: host height keywords: - height - host - host. slot_uri: MIXS:0000264 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 0.1 m host_last_meal: annotations: Expected_value: content;duration description: Content of last meal and time since feeding; can include multiple values title: host last meal keywords: - host - host. string_serialization: '{text};{duration}' slot_uri: MIXS:0000870 multivalued: true inlined_as_list: true host_length: annotations: Preferred_unit: centimeter, millimeter, meter storage_units: cm|m|mm description: The length of subject title: host length examples: - value: 1 m keywords: - host - host. - length slot_uri: MIXS:0000256 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true host_life_stage: annotations: Expected_value: stage description: Description of life stage of host title: host life stage keywords: - host - host. - life slot_uri: MIXS:0000251 range: TextValue host_phenotype: annotations: Expected_value: PATO or HP description: Phenotype of human or other host. Use terms from the phenotypic quality ontology (pato) or the Human Phenotype Ontology (HP) title: host phenotype keywords: - host - host. string_serialization: '{termLabel} [{termID}]' slot_uri: MIXS:0000874 range: ControlledTermValue host_sex: annotations: Expected_value: enumeration description: Gender or physical sex of the host title: host sex comments: - example of non-binary from Excel sheets does not match any of the enumerated values keywords: - host - host. string_serialization: '[female|hermaphrodite|non-binary|male|transgender|transgender (female to male)|transgender (male to female) |undeclared]' slot_uri: MIXS:0000811 host_shape: description: Morphological shape of host title: host shape examples: - value: round keywords: - host - host. slot_uri: MIXS:0000261 range: TextValue host_subject_id: description: A unique identifier by which each subject can be referred to, de-identified title: host subject id keywords: - host - host. - identifier slot_uri: MIXS:0000861 range: TextValue host_subspecf_genlin: annotations: Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar description: Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123 title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' keywords: - host - host. - lineage string_serialization: '{rank name}:{text}' slot_uri: MIXS:0001318 multivalued: true range: string host_substrate: description: The growth substrate of the host title: host substrate examples: - value: rock keywords: - host - host. slot_uri: MIXS:0000252 range: TextValue host_symbiont: annotations: Expected_value: species name or common name description: The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host. The sampled symbiont can have its own symbionts. For example, parasites may have hyperparasites (=parasites of the parasite) title: observed host symbionts keywords: - host - host. - observed - symbiosis slot_uri: MIXS:0001298 range: string multivalued: true host_taxid: annotations: Expected_value: NCBI taxon identifier description: NCBI taxon id of the host, e.g. 9606 title: host taxid keywords: - host - host. - taxon slot_uri: MIXS:0000250 comments: - Homo sapiens [NCBITaxon:9606] would be a reasonable has_raw_value range: ControlledIdentifiedTermValue host_tot_mass: annotations: Preferred_unit: kilogram, gram storage_units: g|kg description: Total mass of the host at collection, the unit depends on host title: host total mass keywords: - host - host. - mass - total slot_uri: MIXS:0000263 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 2500 g host_wet_mass: annotations: Preferred_unit: kilogram, gram storage_units: g|kg description: Measurement of wet mass title: host wet mass examples: - value: 1500 g keywords: - host - host. - mass - wet slot_uri: MIXS:0000567 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true humidity: description: Amount of water vapour in the air, at the time of sampling title: humidity keywords: - humidity slot_uri: MIXS:0000100 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: g/m3|% examples: - value: 25 g/m3 humidity_regm: annotations: Expected_value: humidity value;treatment interval and duration Preferred_unit: gram per cubic meter description: Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - humidity - regimen string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000568 multivalued: true range: TextValue inlined_as_list: true indoor_space: description: A distinguishable space within a structure, the purpose for which discrete areas of a building is used title: indoor space examples: - value: foyer keywords: - indoor slot_uri: MIXS:0000763 range: IndoorSpaceEnum indoor_surf: description: Type of indoor surface title: indoor surface examples: - value: wall keywords: - indoor - surface slot_uri: MIXS:0000764 range: IndoorSurfEnum indust_eff_percent: annotations: Preferred_unit: percentage storage_units: '%' description: Percentage of industrial effluents received by wastewater treatment plant title: industrial effluent percent keywords: - percent slot_uri: MIXS:0000662 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true inorg_particles: annotations: Expected_value: inorganic particle name;measurement value Preferred_unit: mole per liter, milligram per liter description: Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles title: inorganic particles keywords: - inorganic - particle string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000664 multivalued: true range: TextValue inlined_as_list: true inside_lux: annotations: Preferred_unit: kilowatt per square metre units_alignment_excuse: mixs_inconsistent description: The recorded value at sampling time (power density) title: inside lux light keywords: - inside - light slot_uri: MIXS:0000168 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true int_wall_cond: description: The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas title: interior wall condition examples: - value: damaged keywords: - condition - interior - wall slot_uri: MIXS:0000813 range: DamagedEnum iw_bt_date_well: description: Injection water breakthrough date per well following a secondary and/or tertiary recovery title: injection water breakthrough date of specific well examples: - value: '2013-03-25T12:42:31+01:00' keywords: - date - water slot_uri: MIXS:0001010 range: TimestampValue iwf: annotations: Preferred_unit: percent storage_units: '%' description: Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%) title: injection water fraction comments: - percent or float? examples: - value: '0.79' keywords: - fraction - water slot_uri: MIXS:0000455 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true last_clean: description: The last time the floor was cleaned (swept, mopped, vacuumed) title: last time swept/mopped/vacuumed examples: - value: '2013-03-25T12:42:31+01:00' keywords: - time slot_uri: MIXS:0000814 range: TimestampValue lat_lon: description: The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees, limited to 8 decimal points, and in WGS84 system title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 keywords: - geographic - location slot_uri: MIXS:0000009 structured_pattern: syntax: ^{lat} {lon}$ interpolated: true partial_match: true range: GeolocationValue light_intensity: annotations: Preferred_unit: lux storage_units: lx description: Measurement of light intensity title: light intensity examples: - value: 0.3 lx keywords: - intensity - light slot_uri: MIXS:0000706 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true light_regm: annotations: Expected_value: exposure type;light intensity;light quality Preferred_unit: lux; micrometer, nanometer, angstrom description: Information about treatment(s) involving exposure to light, including both light intensity and quality title: light regimen examples: - value: incandescant light;10 lux;450 nanometer keywords: - light - regimen string_serialization: '{text};{float} {unit};{float} {unit}' slot_uri: MIXS:0000569 range: TextValue light_type: description: Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light title: light type examples: - value: desk lamp keywords: - light - type slot_uri: MIXS:0000769 range: LightTypeEnum multivalued: true link_addit_analys: description: Link to additional analysis results performed on the sample title: links to additional analysis keywords: - link slot_uri: MIXS:0000340 range: TextValue structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true link_class_info: annotations: Expected_value: PMID,DOI or url description: Link to digitized soil maps or other soil classification information title: link to classification information keywords: - classification - information - link string_serialization: '{termLabel} [{termID}]' slot_uri: MIXS:0000329 link_climate_info: description: Link to climate resource title: link to climate information keywords: - information - link slot_uri: MIXS:0000328 range: TextValue structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true lithology: description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If "other" is specified, please propose entry in "additional info" field' title: lithology examples: - value: Volcanic keywords: - lithology slot_uri: MIXS:0000990 range: LithologyEnum recommended: true local_class: annotations: Expected_value: local classification name description: Soil classification based on local soil classification system title: soil_taxonomic/local classification keywords: - classification slot_uri: MIXS:0000330 range: TextValue local_class_meth: description: Reference or method used in determining the local soil classification title: soil_taxonomic/local classification method keywords: - classification - method slot_uri: MIXS:0000331 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true magnesium: annotations: Preferred_unit: mole per liter, milligram per liter, parts per million, micromole per kilogram storage_units: '[ppm]|mg/L|mol/L|umol/kg|mg/kg' description: Concentration of magnesium in the sample title: magnesium examples: - value: 52.8 umol/kg slot_uri: MIXS:0000431 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true max_occup: description: The maximum amount of people allowed in the indoor environment title: maximum occupancy keywords: - maximum slot_uri: MIXS:0000229 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: "1" mean_frict_vel: annotations: Preferred_unit: meter per second storage_units: m/s description: Measurement of mean friction velocity title: mean friction velocity examples: - value: 0.5 m/s keywords: - mean - velocity slot_uri: MIXS:0000498 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true mean_peak_frict_vel: annotations: Preferred_unit: meter per second storage_units: m/s description: Measurement of mean peak friction velocity title: mean peak friction velocity examples: - value: 1 m/s keywords: - mean - peak - velocity slot_uri: MIXS:0000502 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true mech_struc: description: 'mechanical structure: a moving structure' title: mechanical structure examples: - value: elevator slot_uri: MIXS:0000815 range: MechStrucEnum mechanical_damage: annotations: Expected_value: damage type;body site description: Information about any mechanical damage exerted on the plant; can include multiple damages and sites title: mechanical damage examples: - value: pruning;bark string_serialization: '{text};{text}' slot_uri: MIXS:0001052 multivalued: true inlined_as_list: true methane: annotations: Preferred_unit: micromole per liter, parts per billion, parts per million storage_units: '[ppb]|[ppm]|umol/L' description: Methane (gas) amount or concentration at the time of sampling title: methane slot_uri: MIXS:0000101 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 1800 [ppb] micro_biomass_meth: description: Reference or method used in determining microbial biomass title: microbial biomass method comments: - slot name/scn was microbial_biomass_meth examples: - value: http://dx.doi.org/10.1016/j.soilbio.2005.01.021 keywords: - biomass - method - microbial slot_uri: MIXS:0000339 range: string microbial_biomass: annotations: Preferred_unit: ton, kilogram, gram per kilogram soil units_alignment_excuse: complex_unit description: The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units title: microbial biomass keywords: - biomass - microbial slot_uri: MIXS:0000650 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true mineral_nutr_regm: annotations: Expected_value: mineral nutrient name;mineral nutrient amount;treatment interval and duration Preferred_unit: gram, mole per liter, milligram per liter description: Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - mineral - nutrient - regimen string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000570 multivalued: true range: TextValue inlined_as_list: true misc_param: annotations: Expected_value: parameter name;measurement value description: Structured miscellaneous property assertions. Use when a value cannot cleanly fit an existing, policy-governed slot. title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram keywords: - parameter string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000752 multivalued: true range: PropertyAssertion todos: - This slot should not be available in the submission portal. inlined_as_list: true n_alkanes: annotations: Expected_value: n-alkane name;measurement value description: Concentration of n-alkanes; can include multiple n-alkanes title: n-alkanes examples: - value: n-hexadecane;100 milligram per liter string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000503 multivalued: true range: TextValue inlined_as_list: true nitrate: annotations: Preferred_unit: micromole per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|umol/L' description: Concentration of nitrate in the sample title: nitrate examples: - value: 65 umol/L keywords: - nitrate slot_uri: MIXS:0000425 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true nitrite: annotations: Preferred_unit: micromole per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|umol/L' description: Concentration of nitrite in the sample title: nitrite examples: - value: 0.5 umol/L keywords: - nitrite slot_uri: MIXS:0000426 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true nitro: annotations: Preferred_unit: micromole per liter storage_units: umol/L|% description: Concentration of nitrogen (total) title: nitrogen examples: - value: 4.2 umol/L keywords: - nitrogen slot_uri: MIXS:0000504 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true non_min_nutr_regm: annotations: Preferred_unit: gram, mole per liter, milligram per liter description: Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens title: non-mineral nutrient regimen examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ keywords: - non-mineral - nutrient - regimen slot_uri: MIXS:0000571 range: string multivalued: true nucl_acid_amp: description: A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids title: nucleic acid amplification examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ slot_uri: MIXS:0000038 range: TextValue structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true nucl_acid_ext: description: A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample title: nucleic acid extraction examples: - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf slot_uri: MIXS:0000037 range: TextValue structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true number_pets: description: The number of pets residing in the sampled space title: number of pets keywords: - number slot_uri: MIXS:0000231 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: "1" number_plants: description: The number of plant(s) in the sampling space title: number of houseplants keywords: - number slot_uri: MIXS:0000230 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: "1" number_resident: description: The number of individuals currently occupying in the sampling location title: number of residents keywords: - number slot_uri: MIXS:0000232 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: "1" occup_density_samp: description: Average number of occupants at time of sampling per square footage title: occupant density at sampling examples: - value: '0.1' keywords: - density slot_uri: MIXS:0000217 range: QuantityValue annotations: storage_units: 1/[sft_i] occup_document: description: The type of documentation of occupancy title: occupancy documentation examples: - value: estimate keywords: - documentation slot_uri: MIXS:0000816 range: OccupDocumentEnum occup_samp: description: Number of occupants present at time of sample within the given space title: occupancy at sampling examples: - value: '10' slot_uri: MIXS:0000772 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: "1" org_carb: description: Concentration of organic carbon title: organic carbon examples: - value: 0.015 mg/L keywords: - carbon - organic slot_uri: MIXS:0000508 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: umol/L|%|mg/L org_count_qpcr_info: annotations: Expected_value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles Preferred_unit: number of cells per gram (or ml or cm^2) description: 'If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)' title: organism count qPCR information keywords: - count - information - organism string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles' slot_uri: MIXS:0000099 range: string org_matter: annotations: Preferred_unit: microgram per liter storage_units: ug/L description: Concentration of organic matter title: organic matter examples: - value: 200 ug/L keywords: - organic slot_uri: MIXS:0000204 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true org_nitro: description: Concentration of organic nitrogen title: organic nitrogen examples: - value: 4 ug/L keywords: - nitrogen - organic slot_uri: MIXS:0000205 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: ug/L org_particles: annotations: Expected_value: particle name;measurement value Preferred_unit: gram per liter description: Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc title: organic particles keywords: - organic - particle string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000665 multivalued: true range: TextValue inlined_as_list: true organism_count: annotations: Expected_value: organism name;measurement value;enumeration storage_units: "1" description: 'Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)' title: organism count keywords: - count - organism string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]' slot_uri: MIXS:0000103 multivalued: true range: QuantityValue inlined_as_list: true owc_tvdss: annotations: Preferred_unit: meter storage_units: m description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS) title: oil water contact depth keywords: - depth - oil - water slot_uri: MIXS:0000405 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true oxy_stat_samp: description: Oxygenation status of sample title: oxygenation status of sample examples: - value: aerobic keywords: - oxygen - sample - status slot_uri: MIXS:0000753 range: OxyStatSampEnum oxygen: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Oxygen (gas) amount or concentration at the time of sampling title: oxygen examples: - value: 600 [ppm] keywords: - oxygen slot_uri: MIXS:0000104 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true part_org_carb: description: Concentration of particulate organic carbon title: particulate organic carbon examples: - value: 0.02 mg/L keywords: - carbon - organic - particle - particulate slot_uri: MIXS:0000515 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: ug/L|mg/L part_org_nitro: annotations: Preferred_unit: microgram per liter, micromole per liter storage_units: ug/L|umol/L|mg/L description: Concentration of particulate organic nitrogen title: particulate organic nitrogen examples: - value: 0.3 umol/L keywords: - nitrogen - organic - particle - particulate slot_uri: MIXS:0000719 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true particle_class: annotations: Expected_value: particle name;measurement value Preferred_unit: micrometer description: Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values title: particle classification keywords: - classification - particle string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000206 multivalued: true range: TextValue inlined_as_list: true pcr_cond: annotations: Expected_value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles description: Description of reaction conditions and components of polymerase chain reaction performed during library preparation. title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 - value: initial denaturation:94degC_1.5min keywords: - condition - pcr string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles slot_uri: MIXS:0000049 pcr_primers: description: PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT keywords: - pcr slot_uri: MIXS:0000046 structured_pattern: syntax: FWD:{dna_bases};REV:{dna_bases} interpolated: true permeability: annotations: Expected_value: measurement value range Preferred_unit: mD description: 'Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))' title: permeability string_serialization: '{integer} - {integer} {unit}' slot_uri: MIXS:0000404 range: TextValue perturbation: annotations: Expected_value: perturbation type name;perturbation interval and duration description: Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types title: perturbation examples: - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M keywords: - perturbation string_serialization: '{text};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000754 multivalued: true range: TextValue inlined_as_list: true pesticide_regm: annotations: Preferred_unit: gram, mole per liter, milligram per liter description: Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens title: pesticide regimen examples: - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen slot_uri: MIXS:0000573 range: TextValue multivalued: true inlined_as_list: true petroleum_hydrocarb: annotations: Preferred_unit: micromole per liter storage_units: umol/L description: Concentration of petroleum hydrocarbon title: petroleum hydrocarbon examples: - value: 0.05 umol/L keywords: - hydrocarbon - petroleum slot_uri: MIXS:0000516 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ph: description: pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid title: pH examples: - value: '7.2' keywords: - ph slot_uri: MIXS:0001001 range: float ph_meth: description: Reference or method used in determining pH title: pH method examples: - value: https://www.epa.gov/sites/production/files/2015-12/documents/9040c.pdf keywords: - method - ph slot_uri: MIXS:0001106 range: TextValue ph_regm: description: Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen title: pH regimen examples: - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M keywords: - ph - regimen slot_uri: MIXS:0001056 range: TextValue multivalued: true inlined_as_list: true phaeopigments: annotations: Expected_value: phaeopigment name;measurement value Preferred_unit: milligram per cubic meter description: Concentration of phaeopigments; can include multiple phaeopigments title: phaeopigments examples: - value: 2.5 milligram per cubic meter string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000180 multivalued: true range: TextValue inlined_as_list: true phosphate: annotations: Preferred_unit: micromole per liter storage_units: umol/L description: Concentration of phosphate title: phosphate examples: - value: 0.7 umol/L keywords: - phosphate slot_uri: MIXS:0000505 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true phosplipid_fatt_acid: annotations: Expected_value: phospholipid fatty acid name;measurement value description: Concentration of phospholipid fatty acids; can include multiple values title: phospholipid fatty acid examples: - value: 2.98 milligram per liter string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000181 multivalued: true range: TextValue inlined_as_list: true photon_flux: annotations: Preferred_unit: number of photons per second per unit area storage_units: umol/m2/s description: Measurement of photon flux title: photon flux examples: - value: 3.926 umol/m2/s slot_uri: MIXS:0000725 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true plant_growth_med: annotations: Expected_value: EO or enumeration description: Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary title: plant growth medium keywords: - growth - plant string_serialization: '{termLabel} [{termID}] or [husk|other artificial liquid medium|other artificial solid medium|peat moss|perlite|pumice|sand|soil|vermiculite|water]' slot_uri: MIXS:0001057 range: ControlledTermValue plant_product: annotations: Expected_value: product name description: Substance produced by the plant, where the sample was obtained from title: plant product examples: - value: xylem sap [PO:0025539] keywords: - plant - product slot_uri: MIXS:0001058 range: TextValue plant_sex: description: Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite title: plant sex examples: - value: Hermaphroditic keywords: - plant slot_uri: MIXS:0001059 range: PlantSexEnum plant_struc: description: Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here title: plant structure examples: - value: epidermis [PO:0005679] keywords: - plant slot_uri: MIXS:0001060 range: ControlledTermValue structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true pollutants: annotations: Expected_value: pollutant name;measurement value Preferred_unit: gram, mole per liter, milligram per liter, microgram per cubic meter description: Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant title: pollutants examples: - value: lead;0.15 microgram per cubic meter string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000107 multivalued: true range: TextValue inlined_as_list: true pool_dna_extracts: annotations: Expected_value: pooling status;number of pooled extracts Preferred_unit: gram, milliliter, microliter description: Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given title: pooling of DNA extracts (if done) examples: - value: yes, 5 keywords: - dna - pooling slot_uri: MIXS:0000325 porosity: annotations: Expected_value: measurement value or range Preferred_unit: percentage description: Porosity of deposited sediment is volume of voids divided by the total volume of sample title: porosity keywords: - porosity string_serialization: '{float} - {float} {unit}' slot_uri: MIXS:0000211 range: TextValue potassium: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L|mg/kg' description: Concentration of potassium in the sample title: potassium examples: - value: 463 mg/L slot_uri: MIXS:0000430 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true pour_point: annotations: Preferred_unit: degree Celsius storage_units: Cel description: 'Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high pour point is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)' title: pour point slot_uri: MIXS:0000127 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true pre_treatment: annotations: Expected_value: pre-treatment type description: The process of pre-treatment removes materials that can be easily collected from the raw wastewater title: pre-treatment slot_uri: MIXS:0000348 range: TextValue pres_animal_insect: annotations: Expected_value: enumeration;count description: The type and number of animals or insects present in the sampling space title: presence of pets, animals, or insects examples: - value: cat;5 keywords: - animal - presence string_serialization: '[cat|dog|rodent|snake|other];{integer}' slot_uri: MIXS:0000819 range: string pressure: annotations: Preferred_unit: atmosphere storage_units: atm description: Pressure to which the sample is subject to, in atmospheres title: pressure examples: - value: 50 atm keywords: - pressure slot_uri: MIXS:0000412 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true prev_land_use_meth: description: Reference or method used in determining previous land use and dates title: history/previous land use method keywords: - history - land - method - use slot_uri: MIXS:0000316 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true previous_land_use: annotations: Expected_value: land use name;date description: Previous land use and dates title: history/previous land use examples: - value: fallow;2018-05-11T14:30Z keywords: - history - land - use string_serialization: '{text};{timestamp}' slot_uri: MIXS:0000315 primary_prod: annotations: Preferred_unit: milligram per cubic meter per day, gram per square meter per day storage_units: g/m2/d|mg/m3/d description: Measurement of primary production, generally measured as isotope uptake title: primary production examples: - value: 100 mg/m3/d keywords: - primary - production slot_uri: MIXS:0000728 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true primary_treatment: annotations: Expected_value: primary treatment type description: The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed title: primary treatment keywords: - primary - treatment slot_uri: MIXS:0000349 range: TextValue prod_rate: annotations: Preferred_unit: cubic meter per day storage_units: m3/d description: Oil and/or gas production rates per well (e.g. 524 m3 / day) title: production rate keywords: - production - rate slot_uri: MIXS:0000452 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true prod_start_date: description: Date of field's first production title: production start date examples: - value: '2013-03-25T12:42:31+01:00' keywords: - date - production - start slot_uri: MIXS:0001008 range: TimestampValue recommended: true profile_position: description: Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas title: profile position examples: - value: summit slot_uri: MIXS:0001084 range: ProfilePositionEnum quad_pos: description: The quadrant position of the sampling room within the building title: quadrant position examples: - value: West side slot_uri: MIXS:0000820 range: QuadPosEnum radiation_regm: annotations: Expected_value: radiation type name;radiation amount;treatment interval and duration Preferred_unit: rad, gray description: Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000575 multivalued: true range: TextValue inlined_as_list: true rainfall_regm: annotations: Expected_value: measurement value;treatment interval and duration Preferred_unit: millimeter description: Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: rainfall regimen examples: - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - rain - regimen string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000576 multivalued: true range: TextValue inlined_as_list: true reactor_type: annotations: Expected_value: reactor type name description: Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage title: reactor type keywords: - type slot_uri: MIXS:0000350 range: TextValue redox_potential: annotations: Preferred_unit: millivolt storage_units: mV description: Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential title: redox potential examples: - value: 300 mV slot_uri: MIXS:0000182 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true rel_air_humidity: annotations: Preferred_unit: percentage storage_units: '%' description: Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air title: relative air humidity comments: - percent or float? examples: - value: '0.8' keywords: - air - humidity - relative slot_uri: MIXS:0000121 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true rel_humidity_out: annotations: Preferred_unit: gram of air, kilogram of air units_alignment_excuse: mixs_inconsistent description: The recorded outside relative humidity value at the time of sampling title: outside relative humidity examples: - value: 12 per kilogram of air keywords: - humidity - relative slot_uri: MIXS:0000188 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true rel_samp_loc: description: The sampling location within the train car title: relative sampling location examples: - value: center of car keywords: - location - relative slot_uri: MIXS:0000821 range: RelSampLocEnum reservoir: description: Name of the reservoir (e.g. Carapebus) title: reservoir name slot_uri: MIXS:0000303 range: TextValue recommended: true resins_pc: annotations: Preferred_unit: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: resins wt% slot_uri: MIXS:0000134 range: TextValue recommended: true structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true room_air_exch_rate: annotations: Preferred_unit: liter per hour storage_units: L/h description: The rate at which outside air replaces indoor air in a given space title: room air exchange rate keywords: - air - rate - room slot_uri: MIXS:0000169 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true room_architec_elem: description: The unique details and component parts that, together, form the architecture of a distinguishable space within a built structure title: room architectural elements keywords: - room slot_uri: MIXS:0000233 range: string room_condt: description: The condition of the room at the time of sampling title: room condition examples: - value: new keywords: - condition - room slot_uri: MIXS:0000822 range: RoomCondtEnum room_connected: description: List of rooms connected to the sampling room by a doorway title: rooms connected by a doorway examples: - value: office keywords: - doorway - room slot_uri: MIXS:0000826 range: RoomConnectedEnum room_count: description: The total count of rooms in the built structure including all room types title: room count keywords: - count - room slot_uri: MIXS:0000234 range: TextValue room_dim: annotations: Expected_value: measurement value Preferred_unit: meter description: The length, width and height of sampling room title: room dimensions examples: - value: 4 meter x 4 meter x 4 meter keywords: - dimensions - room string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}' slot_uri: MIXS:0000192 range: TextValue room_door_dist: annotations: Preferred_unit: meter description: Distance between doors (meters) in the hallway between the sampling room and adjacent rooms title: room door distance keywords: - distance - door - room slot_uri: MIXS:0000193 range: TextValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true room_door_share: description: List of room(s) (room number, room name) sharing a door with the sampling room title: rooms that share a door with sampling room keywords: - door - room slot_uri: MIXS:0000242 range: TextValue structured_pattern: syntax: ^{room_name};{room_number}$ interpolated: true partial_match: true room_hallway: description: List of room(s) (room number, room name) located in the same hallway as sampling room title: rooms that are on the same hallway keywords: - hallway - room slot_uri: MIXS:0000238 range: TextValue structured_pattern: syntax: ^{room_name};{room_number}$ interpolated: true partial_match: true room_loc: description: The position of the room within the building title: room location in building examples: - value: interior room keywords: - location - room slot_uri: MIXS:0000823 range: RoomLocEnum room_moist_dam_hist: description: The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed title: room moisture damage or mold history keywords: - history - moisture - room slot_uri: MIXS:0000235 range: integer room_net_area: annotations: Preferred_unit: square feet, square meter description: The net floor area of sampling room. Net area excludes wall thicknesses title: room net area keywords: - area - room slot_uri: MIXS:0000194 range: TextValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true room_occup: description: Count of room occupancy at time of sampling title: room occupancy keywords: - room slot_uri: MIXS:0000236 range: QuantityValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true annotations: storage_units: "1" room_samp_pos: description: The horizontal sampling position in the room relative to architectural elements title: room sampling position examples: - value: south corner keywords: - room slot_uri: MIXS:0000824 range: RoomSampPosEnum room_type: annotations: Expected_value: enumeration description: The main purpose or activity of the sampling room. A room is any distinguishable space within a structure title: room type examples: - value: bathroom keywords: - room - type string_serialization: '[attic|bathroom|closet|conference room|elevator|examining room|hallway|kitchen|mail room|private office|open office|stairwell|,restroom|lobby|vestibule|mechanical or electrical room|data center|laboratory_wet|laboratory_dry|gymnasium|natatorium|auditorium|lockers|cafe|warehouse]' slot_uri: MIXS:0000825 room_vol: annotations: Preferred_unit: cubic feet, cubic meter description: Volume of sampling room title: room volume keywords: - room - volume slot_uri: MIXS:0000195 range: TextValue structured_pattern: syntax: ^{integer} {text}$ interpolated: true partial_match: true room_wall_share: description: List of room(s) (room number, room name) sharing a wall with the sampling room title: rooms that share a wall with sampling room keywords: - room - wall slot_uri: MIXS:0000243 range: TextValue structured_pattern: syntax: ^{room_name};{room_number}$ interpolated: true partial_match: true room_window_count: description: Number of windows in the room title: room window count keywords: - count - room - window slot_uri: MIXS:0000237 range: integer root_cond: description: Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container title: rooting conditions examples: - value: http://himedialabs.com/TD/PT158.pdf keywords: - condition slot_uri: MIXS:0001061 range: TextValue structured_pattern: syntax: ^({PMID}|{DOI}|{URL}|{text})$ interpolated: true partial_match: true root_med_carbon: annotations: Expected_value: carbon source name;measurement value Preferred_unit: milligram per liter description: Source of organic carbon in the culture rooting medium; e.g. sucrose title: rooting medium carbon examples: - value: sucrose keywords: - carbon string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000577 range: TextValue root_med_macronutr: annotations: Expected_value: macronutrient name;measurement value Preferred_unit: milligram per liter description: Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170 mg/L) title: rooting medium macronutrients examples: - value: KH2PO4;170 milligram per liter keywords: - macronutrients string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000578 range: TextValue root_med_micronutr: annotations: Expected_value: micronutrient name;measurement value Preferred_unit: milligram per liter description: Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L) title: rooting medium micronutrients examples: - value: H3BO3;6.2 milligram per liter keywords: - micronutrients string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000579 range: TextValue root_med_ph: description: pH measurement of the culture rooting medium; e.g. 5.5 title: rooting medium pH examples: - value: '7.5' keywords: - ph slot_uri: MIXS:0001062 range: QuantityValue annotations: storage_units: '[pH]' root_med_regl: annotations: Expected_value: regulator name;measurement value Preferred_unit: milligram per liter description: Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5 mg/L NAA title: rooting medium regulators examples: - value: abscisic acid;0.75 milligram per liter string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000581 range: TextValue root_med_solid: description: Specification of the solidifying agent in the culture rooting medium; e.g. agar title: rooting medium solidifier examples: - value: agar slot_uri: MIXS:0001063 range: TextValue root_med_suppl: annotations: Expected_value: supplement name;measurement value Preferred_unit: milligram per liter description: Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5 mg/L) title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter keywords: - organic string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000580 range: TextValue salinity: annotations: Preferred_unit: practical salinity unit, percentage storage_units: '%|mg/L' description: The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater title: salinity examples: - value: 70 mg/L keywords: - salinity slot_uri: MIXS:0000183 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true salt_regm: annotations: Preferred_unit: gram, microgram, mole per liter, gram per liter description: Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen - salt slot_uri: MIXS:0000582 range: TextValue multivalued: true inlined_as_list: true samp_capt_status: description: Reason for the sample title: sample capture status examples: - value: farm sample keywords: - sample - status slot_uri: MIXS:0000860 range: SampCaptStatusEnum samp_collect_point: description: Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If "other" is specified, please propose entry in "additional info" field title: sample collection point examples: - value: well keywords: - sample slot_uri: MIXS:0001015 range: SampCollectPointEnum samp_dis_stage: description: Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen title: sample disease stage examples: - value: infection keywords: - disease - sample slot_uri: MIXS:0000249 range: SampDisStageEnum samp_floor: annotations: Expected_value: enumeration description: The floor of the building, where the sampling room is located title: sampling floor examples: - value: 4th floor keywords: - floor slot_uri: MIXS:0000828 pattern: ^(?:(?:\d*1[1-3]th|\d*1st|\d*2nd|\d*3rd|\d*[04-9]th) floor|basement|lobby)$ samp_loc_corr_rate: annotations: Preferred_unit: millimeter per year description: Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays title: corrosion rate at sample location keywords: - location - rate - sample slot_uri: MIXS:0000136 range: TextValue recommended: true structured_pattern: syntax: ^{float} *- *{float} {unit}$ interpolated: true partial_match: true samp_mat_process: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol keywords: - material - process - sample slot_uri: MIXS:0000016 range: ControlledTermValue samp_md: annotations: Expected_value: measurement value;enumeration Preferred_unit: meter storage_units: m description: In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If "other" is specified, please propose entry in "additional info" field title: sample measured depth examples: - value: 1534 m keywords: - depth - measurement - sample string_serialization: '{float} {unit};[GL|DF|RT|KB|MSL|other]' slot_uri: MIXS:0000413 range: QuantityValue samp_name: annotations: Preferred_unit: '' description: A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name title: sample name examples: - value: ISDsoil1 keywords: - sample slot_uri: MIXS:0001107 range: string samp_preserv: annotations: Preferred_unit: milliliter description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml) title: preservative added to sample keywords: - sample slot_uri: MIXS:0000463 range: TextValue structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true samp_room_id: description: Sampling room number. This ID should be consistent with the designations on the building floor plans title: sampling room ID or name keywords: - identifier - room slot_uri: MIXS:0000244 range: TextValue samp_size: description: The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected title: amount or size of sample collected examples: - value: 5 L keywords: - sample - size slot_uri: MIXS:0000001 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: L|g|mL|mg samp_sort_meth: description: Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor title: sample size sorting method keywords: - method - sample - size slot_uri: MIXS:0000216 range: string multivalued: true inlined_as_list: true samp_store_dur: description: Duration for which the sample was stored. Indicate the duration for which the sample was stored written in ISO 8601 format title: sample storage duration examples: - value: P1Y6M keywords: - duration - period - sample - storage slot_uri: MIXS:0000116 range: TextValue structured_pattern: syntax: ^{duration}$ interpolated: true partial_match: true samp_store_loc: annotations: Expected_value: location name description: Location at which sample was stored, usually name of a specific freezer/room title: sample storage location examples: - value: Freezer no:5 keywords: - location - sample - storage slot_uri: MIXS:0000755 range: TextValue samp_store_temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: Temperature at which sample was stored, e.g. -80 degree Celsius title: sample storage temperature examples: - value: -80 Cel keywords: - sample - storage - temperature slot_uri: MIXS:0000110 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true samp_subtype: description: Name of sample sub-type. For example if "sample type" is "Produced Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified, please propose entry in "additional info" field title: sample subtype examples: - value: biofilm keywords: - sample slot_uri: MIXS:0000999 range: SampSubtypeEnum recommended: true samp_taxon_id: description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome for mock community/positive controls, or 'blank sample' for negative controls title: taxonomy ID of DNA sample keywords: - dna - identifier - sample - taxon slot_uri: MIXS:0001320 range: ControlledIdentifiedTermValue structured_pattern: syntax: ^{text} \[{NCBItaxon_id}\]$ interpolated: true partial_match: true comments: - coal metagenome [NCBITaxon:1260732] would be a reasonable has_raw_value samp_time_out: annotations: Expected_value: time Preferred_unit: hour description: The recent and long term history of outside sampling title: sampling time outside keywords: - time string_serialization: '{float}' slot_uri: MIXS:0000196 range: TextValue samp_transport_cond: annotations: Expected_value: measurement value;measurement value Preferred_unit: days;degree Celsius description: Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 C) title: sample transport conditions examples: - value: 5 days;-20 degree Celsius keywords: - condition - sample - transport string_serialization: '{float} {unit};{float} {unit}' slot_uri: MIXS:0000410 range: TextValue samp_tvdss: annotations: Expected_value: measurement value or measurement value range Preferred_unit: meter description: Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m title: sample true vertical depth subsea keywords: - depth - sample string_serialization: '{float}-{float} {unit}' slot_uri: MIXS:0000409 recommended: true range: TextValue samp_type: description: The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246) title: sample type examples: - value: built environment sample [GENEPIO:0001248] keywords: - sample - type slot_uri: MIXS:0000998 range: TextValue structured_pattern: syntax: ^{termLabel} \[{termID}\]$ interpolated: true partial_match: true samp_vol_we_dna_ext: annotations: Preferred_unit: milliliter, gram, milligram, square centimeter storage_units: cm2|g|mL|mg description: 'Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)' title: sample volume or weight for DNA extraction examples: - value: 1500 mL keywords: - dna - sample - volume - weight slot_uri: MIXS:0000111 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true samp_weather: description: The weather on the sampling day title: sampling day weather examples: - value: foggy keywords: - day - weather slot_uri: MIXS:0000827 range: SampWeatherEnum samp_well_name: description: Name of the well (e.g. BXA1123) where sample was taken title: sample well name keywords: - sample slot_uri: MIXS:0000296 range: TextValue recommended: true saturates_pc: annotations: Preferred_unit: percent description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: saturates wt% slot_uri: MIXS:0000131 range: TextValue recommended: true structured_pattern: syntax: ^{name};{float} {unit}$ interpolated: true partial_match: true season: description: The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729) title: season examples: - value: autumn [NCIT:C94733] keywords: - season slot_uri: MIXS:0000829 range: SeasonEnum season_environment: description: Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment title: seasonal environment examples: - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - environment - season slot_uri: MIXS:0001068 range: TextValue multivalued: true inlined_as_list: true season_precpt: annotations: Preferred_unit: millimeter storage_units: mm description: The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps title: mean seasonal precipitation examples: - value: 10 mm keywords: - mean - season slot_uri: MIXS:0000645 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true season_temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: Mean seasonal temperature title: mean seasonal temperature examples: - value: 18 Cel keywords: - mean - season - temperature slot_uri: MIXS:0000643 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true season_use: description: The seasons the space is occupied title: seasonal use examples: - value: Winter keywords: - season - use slot_uri: MIXS:0000830 range: SeasonUseEnum secondary_treatment: annotations: Expected_value: secondary treatment type description: The process for substantially degrading the biological content of the sewage title: secondary treatment keywords: - secondary - treatment slot_uri: MIXS:0000351 range: TextValue sediment_type: description: Information about the sediment type based on major constituents title: sediment type examples: - value: biogenous keywords: - sediment - type slot_uri: MIXS:0001078 range: SedimentTypeEnum seq_meth: description: Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103) title: sequencing method examples: - value: 454 Genome Sequencer FLX [OBI:0000702] keywords: - method slot_uri: MIXS:0000050 range: string structured_pattern: syntax: ^{text}|({termLabel} \[{termID}\])$ interpolated: true partial_match: true seq_quality_check: annotations: Expected_value: none or manually edited description: Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA title: sequence quality check examples: - value: none keywords: - quality slot_uri: MIXS:0000051 range: SeqQualityCheckEnum sewage_type: annotations: Expected_value: sewage type name description: Type of wastewater treatment plant as municipial or industrial title: sewage type keywords: - type slot_uri: MIXS:0000215 range: TextValue shad_dev_water_mold: description: Signs of the presence of mold or mildew on the shading device title: shading device signs of water/mold examples: - value: no presence of mold visible keywords: - device slot_uri: MIXS:0000834 range: string shading_device_cond: description: The physical condition of the shading device at the time of sampling title: shading device condition examples: - value: new keywords: - condition - device slot_uri: MIXS:0000831 range: DamagedRupturedEnum shading_device_loc: description: The location of the shading device in relation to the built structure title: shading device location examples: - value: exterior keywords: - device - location slot_uri: MIXS:0000832 range: ShadingDeviceLocEnum shading_device_mat: annotations: Expected_value: material name description: The material the shading device is composed of title: shading device material keywords: - device - material slot_uri: MIXS:0000245 range: TextValue shading_device_type: description: The type of shading device title: shading device type examples: - value: slatted aluminum description: was slatted aluminum awning keywords: - device - type slot_uri: MIXS:0000835 range: ShadingDeviceTypeEnum sieving: annotations: Expected_value: design name and/or size;amount description: Collection design of pooled samples and/or sieve size and amount of sample sieved title: sieving string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000322 range: TextValue silicate: annotations: Preferred_unit: micromole per liter storage_units: umol/L description: Concentration of silicate title: silicate examples: - value: 0.05 umol/L slot_uri: MIXS:0000184 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true size_frac: annotations: Expected_value: filter size value range description: Filtering pore size used in sample preparation title: size fraction selected examples: - value: 0-0.22 micrometer keywords: - fraction - size string_serialization: '{float}-{float} {unit}' slot_uri: MIXS:0000017 range: TextValue size_frac_low: annotations: Preferred_unit: micrometer storage_units: um description: Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials smaller than the size threshold are excluded from the sample title: size-fraction lower threshold examples: - value: 0.2 um keywords: - lower slot_uri: MIXS:0000735 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true size_frac_up: annotations: Preferred_unit: micrometer storage_units: um description: Mesh or pore size of the device used to retain the sample. Materials larger than the size threshold are excluded from the sample. title: size-fraction upper threshold examples: - value: 20 um keywords: - upper slot_uri: MIXS:0000736 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true slope_aspect: annotations: Preferred_unit: degree storage_units: deg description: The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., nw or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration title: slope aspect keywords: - slope slot_uri: MIXS:0000647 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true examples: - value: 35 deg slope_gradient: annotations: Preferred_unit: percentage storage_units: '%' description: Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer title: slope gradient keywords: - slope slot_uri: MIXS:0000646 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sludge_retent_time: annotations: Preferred_unit: hours storage_units: h description: The time activated sludge remains in reactor title: sludge retention time keywords: - time slot_uri: MIXS:0000669 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sodium: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Sodium concentration in the sample title: sodium examples: - value: 10.5 mg/L slot_uri: MIXS:0000428 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true soil_horizon: description: Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath title: soil horizon examples: - value: A horizon keywords: - horizon - soil slot_uri: MIXS:0001082 range: SoilHorizonEnum soil_texture_meth: description: Reference or method used in determining soil texture title: soil texture method examples: - value: https://uwlab.soils.wisc.edu/wp-content/uploads/sites/17/2015/09/particle_size.pdf keywords: - method - soil - texture slot_uri: MIXS:0000336 range: string soil_type: annotations: Expected_value: ENVO:00001998 description: Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes title: soil type examples: - value: plinthosol [ENVO:00002250] keywords: - soil - type slot_uri: MIXS:0000332 range: TextValue soil_type_meth: description: Reference or method used in determining soil series name or other lower-level classification title: soil type method examples: - value: https://www.lrh.usace.army.mil/Portals/38/docs/PR/BluestoneSFEIS/Appendix%20K-Soil%20Descriptions.pdf keywords: - method - soil - type slot_uri: MIXS:0000334 range: TextValue solar_irradiance: annotations: Preferred_unit: kilowatts per square meter per day, ergs per square centimeter per second storage_units: kW/m2/d|erg/cm2/s description: The amount of solar energy that arrives at a specific area of a surface during a specific time interval title: solar irradiance examples: - value: 1.36 kW/m2/d slot_uri: MIXS:0000112 range: QuantityValue multivalued: false structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true soluble_inorg_mat: annotations: Expected_value: soluble inorganic material name;measurement value Preferred_unit: gram, microgram, mole per liter, gram per liter, parts per million description: Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc title: soluble inorganic material keywords: - inorganic - material - soluble string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000672 multivalued: true range: TextValue inlined_as_list: true soluble_org_mat: annotations: Expected_value: soluble organic material name;measurement value Preferred_unit: gram, microgram, mole per liter, gram per liter, parts per million description: Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc title: soluble organic material keywords: - material - organic - soluble string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000673 multivalued: true range: TextValue inlined_as_list: true soluble_react_phosp: annotations: Preferred_unit: micromole per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|umol/L|ug/L' description: Concentration of soluble reactive phosphorus title: soluble reactive phosphorus examples: - value: 0.1 mg/L keywords: - phosphorus - soluble slot_uri: MIXS:0000738 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true source_mat_id: annotations: Expected_value: 'for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer' description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2) title: source material identifiers examples: - value: MPI012345 keywords: - identifier - material - source slot_uri: MIXS:0000026 range: TextValue multivalued: false space_typ_state: description: Customary or normal state of the space title: space typical state examples: - value: typically occupied slot_uri: MIXS:0000770 range: SpaceTypStateEnum specific: description: 'The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents' title: specifications examples: - value: construction slot_uri: MIXS:0000836 range: SpecificEnum specific_humidity: annotations: Preferred_unit: gram of air, kilogram of air storage_units: g/kg description: The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound title: specific humidity examples: - value: 15 per kilogram of air keywords: - humidity slot_uri: MIXS:0000214 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sr_dep_env: description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field title: source rock depositional environment examples: - value: Marine keywords: - environment - source slot_uri: MIXS:0000996 range: SrDepEnvEnum sr_geol_age: description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field' title: source rock geological age examples: - value: Silurian keywords: - age - source slot_uri: MIXS:0000997 range: GeolAgeEnum sr_kerog_type: description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If "other" is specified, please propose entry in "additional info" field' title: source rock kerogen type examples: - value: Type IV keywords: - source - type slot_uri: MIXS:0000994 range: SrKerogTypeEnum sr_lithology: description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field title: source rock lithology examples: - value: Coal keywords: - lithology - source slot_uri: MIXS:0000995 range: SrLithologyEnum standing_water_regm: description: Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen - water slot_uri: MIXS:0001069 range: TextValue multivalued: true inlined_as_list: true store_cond: description: Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other) title: storage conditions examples: - value: -20 degree Celsius freezer;P2Y10D keywords: - condition - storage slot_uri: MIXS:0000327 range: TextValue substructure_type: description: The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level title: substructure type examples: - value: basement keywords: - type slot_uri: MIXS:0000767 range: SubstructureTypeEnum multivalued: true sulfate: annotations: Preferred_unit: micromole per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|umol/L' description: Concentration of sulfate in the sample title: sulfate examples: - value: 5 umol/L keywords: - sulfate slot_uri: MIXS:0000423 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sulfate_fw: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: Original sulfate concentration in the hydrocarbon resource title: sulfate in formation water keywords: - sulfate - water slot_uri: MIXS:0000407 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true sulfide: annotations: Preferred_unit: micromole per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|umol/L' description: Concentration of sulfide in the sample title: sulfide examples: - value: 2 umol/L keywords: - sulfide slot_uri: MIXS:0000424 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true surf_air_cont: description: Contaminant identified on surface title: surface-air contaminant examples: - value: radon slot_uri: MIXS:0000759 range: SurfAirContEnum recommended: true multivalued: true surf_humidity: annotations: Preferred_unit: percentage storage_units: '%' description: 'Surfaces: water activity as a function of air and material moisture' title: surface humidity comments: - percent or float? examples: - value: '0.1' keywords: - humidity - surface slot_uri: MIXS:0000123 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true surf_material: description: Surface materials at the point of sampling title: surface material examples: - value: wood keywords: - material - surface slot_uri: MIXS:0000758 range: SurfMaterialEnum surf_moisture: annotations: Preferred_unit: parts per million, gram per cubic meter, gram per square meter storage_units: '[ppm]|g/m2|g/m3' description: Water held on a surface title: surface moisture examples: - value: 0.01 g/m2 keywords: - moisture - surface slot_uri: MIXS:0000128 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true surf_moisture_ph: description: ph measurement of surface title: surface moisture pH examples: - value: '7' keywords: - moisture - ph - surface slot_uri: MIXS:0000760 range: float recommended: true surf_temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: Temperature of the surface at the time of sampling title: surface temperature examples: - value: 15 Cel keywords: - surface - temperature slot_uri: MIXS:0000125 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true suspend_part_matter: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: Concentration of suspended particulate matter title: suspended particulate matter examples: - value: 0.5 mg/L keywords: - particle - particulate - suspended slot_uri: MIXS:0000741 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true suspend_solids: annotations: Expected_value: suspended solid name;measurement value Preferred_unit: gram, microgram, milligram per liter, mole per liter, gram per liter, part per million description: Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances title: suspended solids keywords: - solids - suspended string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000150 multivalued: true range: TextValue inlined_as_list: true tan: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: 'Total Acid Number (TAN) is a measurement of acidity that is determined by the amount of potassium hydroxide in milligrams that is needed to neutralize the acids in one gram of oil. It is an important quality measurement of crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)' title: total acid number keywords: - number - total slot_uri: MIXS:0000120 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true target_gene: description: Targeted gene or locus name for marker gene studies title: target gene examples: - value: 16S rRNA, 18S rRNA, nif, amoA, rpo keywords: - target slot_uri: MIXS:0000044 range: TargetGeneEnum target_subfragment: description: Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA title: target subfragment examples: - value: V6, V9, ITS keywords: - target slot_uri: MIXS:0000045 range: TextValue temp: annotations: Preferred_unit: degree Celsius storage_units: Cel description: Temperature of the sample at the time of sampling title: temperature examples: - value: 25 Cel keywords: - temperature slot_uri: MIXS:0000113 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true temp_out: annotations: Preferred_unit: degree Celsius storage_units: Cel description: The recorded temperature value at sampling time outside title: temperature outside house examples: - value: 5 Cel keywords: - house - temperature slot_uri: MIXS:0000197 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tertiary_treatment: annotations: Expected_value: tertiary treatment type description: The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment title: tertiary treatment keywords: - treatment slot_uri: MIXS:0000352 range: TextValue tidal_stage: description: Stage of tide title: tidal stage examples: - value: high tide slot_uri: MIXS:0000750 range: TidalStageEnum tillage: description: Note method(s) used for tilling title: history/tillage examples: - value: chisel keywords: - history slot_uri: MIXS:0001081 range: TillageEnum multivalued: true tiss_cult_growth_med: description: Description of plant tissue culture growth media used title: tissue culture growth media examples: - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf keywords: - culture - growth slot_uri: MIXS:0001070 range: TextValue structured_pattern: syntax: ^({PMID}|{DOI}|{URL}|{text})$ interpolated: true partial_match: true toluene: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Concentration of toluene in the sample title: toluene slot_uri: MIXS:0000154 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_carb: description: Total carbon content title: total carbon keywords: - carbon - total slot_uri: MIXS:0000525 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: ug/L|% tot_depth_water_col: annotations: Preferred_unit: meter storage_units: m description: Measurement of total depth of water column title: total depth of water column examples: - value: 500 m keywords: - depth - total - water slot_uri: MIXS:0000634 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_diss_nitro: annotations: Preferred_unit: microgram per liter storage_units: ug/L|umol/L description: 'Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen' title: total dissolved nitrogen examples: - value: 40 ug/L keywords: - dissolved - nitrogen - total slot_uri: MIXS:0000744 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_inorg_nitro: annotations: Preferred_unit: microgram per liter storage_units: ug/L description: Total inorganic nitrogen content title: total inorganic nitrogen examples: - value: 40 ug/L keywords: - inorganic - nitrogen - total slot_uri: MIXS:0000745 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_iron: annotations: Preferred_unit: milligram per liter, milligram per kilogram storage_units: mg/L|mg/kg description: Concentration of total iron in the sample title: total iron keywords: - total slot_uri: MIXS:0000105 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_nitro: annotations: Preferred_unit: microgram per liter, micromole per liter, milligram per liter storage_units: mg/L|ug/L|umol/L|% description: 'Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen' title: total nitrogen concentration examples: - value: 50 umol/L keywords: - concentration - nitrogen - total slot_uri: MIXS:0000102 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_nitro_cont_meth: description: Reference or method used in determining the total nitrogen title: total nitrogen content method examples: - value: https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/0471142913.fab0102s00 keywords: - content - method - nitrogen - total slot_uri: MIXS:0000338 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true tot_nitro_content: description: Total nitrogen content of the sample title: total nitrogen content examples: - value: 5 mg/L keywords: - content - nitrogen - total slot_uri: MIXS:0000530 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: mg/L|ug/L|umol/L|% tot_org_c_meth: description: Reference or method used in determining total organic carbon title: total organic carbon method examples: - value: https://www.epa.gov/sites/production/files/2015-12/documents/9060a.pdf keywords: - carbon - method - organic - total slot_uri: MIXS:0000337 range: string structured_pattern: syntax: ^({PMID}|{DOI}|{URL})$ interpolated: true partial_match: true tot_org_carb: annotations: Preferred_unit: gram Carbon per kilogram sample material storage_units: mg/L description: Total organic carbon content title: total organic carbon examples: - value: 5 mg/L keywords: - carbon - organic - total slot_uri: MIXS:0000533 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_part_carb: annotations: Preferred_unit: microgram per liter, micromole per liter storage_units: ug/L|umol/L description: Total particulate carbon content title: total particulate carbon examples: - value: 35 umol/L keywords: - carbon - particle - particulate - total slot_uri: MIXS:0000747 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_phosp: annotations: Preferred_unit: micromole per liter, milligram per liter, parts per million storage_units: '[ppm]|mg/L|umol/L' description: 'Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus' title: total phosphorus examples: - value: 0.03 mg/L keywords: - phosphorus - total slot_uri: MIXS:0000117 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_phosphate: annotations: Preferred_unit: microgram per liter, micromole per liter storage_units: ug/L|umol/L description: Total amount or concentration of phosphate title: total phosphate keywords: - phosphate - total slot_uri: MIXS:0000689 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tot_sulfur: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Concentration of total sulfur in the sample title: total sulfur keywords: - sulfur - total slot_uri: MIXS:0000419 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true train_line: description: The subway line name title: train line examples: - value: red keywords: - train slot_uri: MIXS:0000837 range: TrainLineEnum train_stat_loc: description: The train station collection location title: train station collection location examples: - value: forest hills keywords: - location - train slot_uri: MIXS:0000838 range: TrainStatLocEnum train_stop_loc: description: The train stop collection location title: train stop collection location examples: - value: end keywords: - location - stop - train slot_uri: MIXS:0000839 range: TrainStopLocEnum turbidity: description: Measure of the amount of cloudiness or haziness in water caused by individual particles title: turbidity examples: - value: 0.3 [NTU] slot_uri: MIXS:0000191 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: '[NTU]|[FNU]' tvdss_of_hcr_press: annotations: Preferred_unit: meter storage_units: m description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m) title: depth (TVDSS) of hydrocarbon resource pressure keywords: - depth - hydrocarbon - pressure - resource slot_uri: MIXS:0000397 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true tvdss_of_hcr_temp: annotations: Preferred_unit: meter storage_units: m description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m) title: depth (TVDSS) of hydrocarbon resource temperature keywords: - depth - hydrocarbon - resource - temperature slot_uri: MIXS:0000394 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true typ_occup_density: description: Customary or normal density of occupants title: typical occupant density examples: - value: '25' keywords: - density slot_uri: MIXS:0000771 range: float ventilation_rate: annotations: Preferred_unit: cubic meter per minute, liters per second storage_units: L/s|m3/min description: Ventilation rate of the system in the sampled premises title: ventilation rate examples: - value: 750 m3/min keywords: - rate slot_uri: MIXS:0000114 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true ventilation_type: annotations: Expected_value: ventilation type name description: Ventilation system used in the sampled premises title: ventilation type examples: - value: Operable windows keywords: - type slot_uri: MIXS:0000756 range: TextValue multivalued: false vfa: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Concentration of Volatile Fatty Acids in the sample title: volatile fatty acids slot_uri: MIXS:0000152 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true vfa_fw: annotations: Preferred_unit: milligram per liter storage_units: mg/L description: Original volatile fatty acid concentration in the hydrocarbon resource title: vfa in formation water keywords: - water slot_uri: MIXS:0000408 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true vis_media: annotations: Expected_value: enumeration description: The building visual media title: visual media examples: - value: 3D scans string_serialization: '[photos|videos|commonly of the building|site context (adjacent buildings, vegetation, terrain, streets)|interiors|equipment|3D scans]' slot_uri: MIXS:0000840 viscosity: annotations: Expected_value: measurement value;measurement value Preferred_unit: cP at degree Celsius description: A measure of oil's resistance to gradual deformation by shear stress or tensile stress (e.g. 3.5 cp; 100 C) title: viscosity string_serialization: '{float} {unit};{float} {unit}' slot_uri: MIXS:0000126 range: TextValue volatile_org_comp: annotations: Expected_value: volatile organic compound name;measurement value Preferred_unit: microgram per cubic meter, parts per million, nanogram per liter description: Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound title: volatile organic compounds examples: - value: formaldehyde;500 nanogram per liter keywords: - organic string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000115 multivalued: true range: TextValue inlined_as_list: true wall_area: annotations: Preferred_unit: square meter storage_units: m2 description: The total area of the sampled room's walls title: wall area keywords: - area - wall slot_uri: MIXS:0000198 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true wall_const_type: description: The building class of the wall defined by the composition of the building elements and fire-resistance rating title: wall construction type examples: - value: fire resistive keywords: - type - wall slot_uri: MIXS:0000841 range: WallConstTypeEnum wall_finish_mat: description: The material utilized to finish the outer most layer of the wall title: wall finish material examples: - value: wood keywords: - material - wall slot_uri: MIXS:0000842 range: WallFinishMatEnum wall_height: annotations: Preferred_unit: centimeter storage_units: cm description: The average height of the walls in the sampled room title: wall height keywords: - height - wall slot_uri: MIXS:0000221 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true wall_loc: description: The relative location of the wall within the room title: wall location examples: - value: north keywords: - location - wall slot_uri: MIXS:0000843 range: CompassDirections8Enum wall_surf_treatment: description: The surface treatment of interior wall title: wall surface treatment examples: - value: paneling keywords: - surface - treatment - wall slot_uri: MIXS:0000845 range: WallSurfTreatmentEnum wall_texture: description: The feel, appearance, or consistency of a wall surface title: wall texture examples: - value: popcorn keywords: - texture - wall slot_uri: MIXS:0000846 range: CeilingWallTextureEnum wall_thermal_mass: annotations: Preferred_unit: joule per degree Celsius storage_units: J/K description: The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint title: wall thermal mass keywords: - mass - wall slot_uri: MIXS:0000222 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true wall_water_mold: description: Signs of the presence of mold or mildew on a wall title: wall signs of water/mold examples: - value: no presence of mold visible keywords: - wall slot_uri: MIXS:0000844 range: MoldVisibilityEnum wastewater_type: annotations: Expected_value: wastewater type name description: The origin of wastewater such as human waste, rainfall, storm drains, etc title: wastewater type keywords: - type slot_uri: MIXS:0000353 range: TextValue water_cont_soil_meth: description: Reference or method used in determining the water content of soil title: water content method keywords: - content - method - water slot_uri: MIXS:0000323 range: string water_content: annotations: Preferred_unit: gram per gram or cubic centimeter per cubic centimeter description: Water content measurement title: water content keywords: - content - water slot_uri: MIXS:0000185 range: string structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_current: annotations: Preferred_unit: cubic meter per second, knots storage_units: '[kn_i]|m3/s' description: Measurement of magnitude and direction of flow within a fluid title: water current examples: - value: 10 m3/s keywords: - water slot_uri: MIXS:0000203 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_cut: annotations: Preferred_unit: percent storage_units: '%' description: Current amount of water (%) in a produced fluid stream; or the average of the combined streams title: water cut comments: - percent or float? examples: - value: 45% keywords: - water slot_uri: MIXS:0000454 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_feat_size: annotations: Preferred_unit: square meter storage_units: m2 description: The size of the water feature title: water feature size keywords: - feature - size - water slot_uri: MIXS:0000223 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_feat_type: description: The type of water feature present within the building being sampled title: water feature type examples: - value: stream keywords: - feature - type - water slot_uri: MIXS:0000847 range: WaterFeatTypeEnum water_prod_rate: annotations: Preferred_unit: cubic meter per day storage_units: m3/d description: Water production rates per well (e.g. 987 m3 / day) title: water production rate keywords: - production - rate - water slot_uri: MIXS:0000453 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true water_temp_regm: annotations: Preferred_unit: degree Celsius description: Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen - temperature - water slot_uri: MIXS:0000590 range: TextValue multivalued: true inlined_as_list: true watering_regm: annotations: Preferred_unit: milliliter, liter description: Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M keywords: - regimen - water slot_uri: MIXS:0000591 range: TextValue multivalued: true inlined_as_list: true weekday: description: The day of the week when sampling occurred title: weekday examples: - value: Sunday slot_uri: MIXS:0000848 range: WeekdayEnum win: description: 'A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)' title: well identification number keywords: - identifier - number slot_uri: MIXS:0000297 range: TextValue recommended: true wind_direction: annotations: Preferred_unit: degrees or cardinal direction description: Wind direction is the direction from which a wind originates title: wind direction keywords: - direction - wind slot_uri: MIXS:0000757 range: TextValue wind_speed: description: speed of wind measured at the time of sampling title: wind speed keywords: - speed - wind slot_uri: MIXS:0000118 range: QuantityValue structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true annotations: storage_units: km/h|m/s examples: - value: 21 km/h window_cond: description: The physical condition of the window at the time of sampling title: window condition examples: - value: rupture keywords: - condition - window slot_uri: MIXS:0000849 range: DamagedRupturedEnum window_cover: description: The type of window covering title: window covering examples: - value: curtains keywords: - window slot_uri: MIXS:0000850 range: WindowCoverEnum window_horiz_pos: description: The horizontal position of the window on the wall title: window horizontal position examples: - value: middle keywords: - window slot_uri: MIXS:0000851 range: WindowHorizPosEnum window_loc: description: The relative location of the window within the room title: window location examples: - value: west keywords: - location - window slot_uri: MIXS:0000852 range: CompassDirections8Enum window_mat: description: The type of material used to finish a window title: window material examples: - value: wood keywords: - material - window slot_uri: MIXS:0000853 range: WindowMatEnum window_open_freq: description: The number of times windows are opened per week title: window open frequency keywords: - frequency - window slot_uri: MIXS:0000246 range: TextValue window_size: annotations: Expected_value: measurement value Preferred_unit: inch, meter description: The window's length and width title: window area/size keywords: - window string_serialization: '{float} {unit} x {float} {unit}' slot_uri: MIXS:0000224 range: TextValue window_status: description: Defines whether the windows were open or closed during environmental testing title: window status examples: - value: open keywords: - status - window slot_uri: MIXS:0000855 range: WindowStatusEnum window_type: description: The type of windows title: window type examples: - value: fixed window keywords: - type - window slot_uri: MIXS:0000856 range: WindowTypeEnum window_vert_pos: description: The vertical position of the window on the wall title: window vertical position examples: - value: middle keywords: - window slot_uri: MIXS:0000857 range: WindowVertPosEnum window_water_mold: description: Signs of the presence of mold or mildew on the window title: window signs of water/mold examples: - value: no presence of mold visible keywords: - window slot_uri: MIXS:0000854 range: MoldVisibilityEnum xylene: annotations: Preferred_unit: milligram per liter, parts per million storage_units: '[ppm]|mg/L' description: Concentration of xylene in the sample title: xylene slot_uri: MIXS:0000156 range: QuantityValue recommended: true structured_pattern: syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$ interpolated: true partial_match: true samp_collec_device: annotations: Expected_value: device name description: The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094) title: sample collection device keywords: - device - sample string_serialization: '{termLabel} [{termID}]|{text}' slot_uri: MIXS:0000002 structured_aliases: - literal_form: samp_collect_device contexts: - https://github.com/GenomicsStandardsConsortium/mixs/releases/tag/v6.2.2 range: string samp_collec_method: description: The method employed for collecting the sample title: sample collection method keywords: - method - sample slot_uri: MIXS:0001225 range: string structured_aliases: - literal_form: samp_collect_method contexts: - https://github.com/GenomicsStandardsConsortium/mixs/releases/tag/v6.2.2 mixs_env_triad_field: annotations: tooltip: >- The MIxS environmental triad provides context about where a sample was collected and what it consists of. description: >- The MIxS environmental triad provides context about where a sample was collected and what it consists of. Its component slots capture the biome that the sample was found in, nearby geographical features that might influence the organisms in the sample, and the substance that was displaced in the process of collecting the sample. Careful population of these slots makes it easier for data users to find samples that are similar, not just in terms of textual values, but through ontological relationships. Furthermore, NMDC requires that its three component slots are populated because the INSDC Biosample databases require that they are populated because the MIxS standard from the GSC requires that they are populated. abstract: true range: ControlledIdentifiedTermValue see_also: - https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS created_by: orcid:0000-0002-5004-3362 # Alicia Clum contributors: - orcid:0000-0001-9076-6066 # Mark Andrew Miller default_range: string