name: mixs-schema-subset title: MIxS Schema Subset for NMDC notes: - removed several MIxS terms/slots that were sharing slot uris; commented out Biosample assignments - note that the NMDC submission schema in sheets_and_friends takes its MIxS terms from https://raw.githubusercontent.com/GenomicsStandardsConsortium/mixs/main/model/schema/mixs.yaml and then potentially modifies them. Ideally this file would contain MIxS terms, essentially ready-to-use - multiple LinkML representations of MIxS are currently available and one will be blessed soon id: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/mixs.yaml imports: - linkml:types prefixes: nmdc: prefix_prefix: nmdc prefix_reference: https://w3id.org/nmdc/ MIXS: prefix_prefix: MIXS prefix_reference: https://w3id.org/mixs/ linkml: prefix_prefix: linkml prefix_reference: https://w3id.org/linkml/ MIXS_yaml: prefix_prefix: MIXS_yaml prefix_reference: https://raw.githubusercontent.com/microbiomedata/mixs/main/model/schema/ default_prefix: MIXS subsets: mixs_environmental_triad: title: MIxS Environmental Triad mixs extension: {} checklist: description: A MIxS checklist. These can be combined with packages from_schema: http://w3id.org/mixs/terms package: description: A MIxS package. These can be combined with checklists from_schema: http://w3id.org/mixs/terms checklist_package_combination: description: A combination of a checklist and a package from_schema: http://w3id.org/mixs/terms enums: arch_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: building: {} shed: {} home: {} biol_stat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: wild: {} natural: {} semi-natural: {} inbred line: {} breeder's line: {} hybrid: {} clonal selection: {} mutant: {} biotic_relationship_enum: from_schema: http://w3id.org/mixs/terms permissible_values: free living: {} parasite: {} commensal: {} symbiont: {} build_docs_enum: from_schema: http://w3id.org/mixs/terms permissible_values: building information model: {} commissioning report: {} complaint logs: {} contract administration: {} cost estimate: {} janitorial schedules or logs: {} maintenance plans: {} schedule: {} sections: {} shop drawings: {} submittals: {} ventilation system: {} windows: {} build_occup_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: office: {} market: {} restaurant: {} residence: {} school: {} residential: {} commercial: {} low rise: {} high rise: {} wood framed: {} health care: {} airport: {} sports complex: {} building_setting_enum: from_schema: http://w3id.org/mixs/terms permissible_values: urban: {} suburban: {} exurban: {} rural: {} ceil_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: new: {} visible wear: {} needs repair: {} damaged: {} rupture: {} ceil_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: drywall: {} mineral fibre: {} tiles: {} PVC: {} plasterboard: {} metal: {} fiberglass: {} stucco: {} mineral wool/calcium silicate: {} wood: {} ceil_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: crows feet: {} crows-foot stomp: {} double skip: {} hawk and trowel: {} knockdown: {} popcorn: {} orange peel: {} rosebud stomp: {} Santa-Fe texture: {} skip trowel: {} smooth: {} stomp knockdown: {} swirl: {} ceil_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: cathedral: {} dropped: {} concave: {} barrel-shaped: {} coffered: {} cove: {} stretched: {} cur_land_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: badlands: {} cities: {} conifers: annotations: originally: conifers (e.g. pine,spruce,fir,cypress) examples: - value: cypress - value: fir - value: pine - value: spruce crop trees: annotations: originally: crop trees (nuts,fruit,christmas trees,nursery trees) examples: - value: christmas trees - value: fruit - value: nursery trees - value: nuts farmstead: {} gravel: {} hardwoods: annotations: originally: hardwoods (e.g. oak,hickory,elm,aspen) examples: - value: aspen - value: elm - value: hickory - value: oak hayland: {} horticultural plants: annotations: originally: horticultural plants (e.g. tulips) examples: - value: tulips industrial areas: {} intermixed hardwood and conifers: {} marshlands: annotations: originally: marshlands (grass,sedges,rushes) examples: - value: grass - value: rushes - value: sedgees meadows: annotations: originally: meadows (grasses,alfalfa,fescue,bromegrass,timothy) examples: - value: alfalfa - value: bromegrass - value: fescue - value: grasses - value: timothy mines/quarries: {} mudflats: {} oil waste areas: {} pastureland: annotations: originally: pastureland (grasslands used for livestock grazing) comments: - grasslands used for livestock grazing permanent snow or ice: {} rainforest: annotations: originally: rainforest (evergreen forest receiving greater than 406 cm annual rainfall) comments: - evergreen forest receiving greater than 406 cm annual rainfall rangeland: {} roads/railroads: {} rock: {} row crops: {} saline seeps: {} salt flats: {} sand: {} shrub crops: annotations: originally: shrub crops (blueberries,nursery ornamentals,filberts) examples: - value: blueberries - value: filberts - value: nursery ornamentals shrub land: annotations: originally: shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus) examples: - value: creosote bush - value: eucalyptus - value: mesquite - value: sage-brush - value: shrub oak small grains: {} successional shrub land: annotations: originally: successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries) examples: - value: blackberries - value: chokecherry - value: hazels - value: shrub dogwoods - value: sumacs - value: tree saplings swamp: annotations: originally: swamp (permanent or semi-permanent water body dominated by woody plants) comments: - permanent or semi-permanent water body dominated by woody plants tropical: annotations: originally: tropical (e.g. mangrove,palms) examples: - value: mangrove - value: palms tundra: annotations: originally: tundra (mosses,lichens) examples: - value: lichens - value: mosses vegetable crops: {} vine crops: annotations: originally: vine crops (grapes) examples: - value: grapes depos_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Continental - Alluvial: {} Continental - Aeolian: {} Continental - Fluvial: {} Continental - Lacustrine: {} Transitional - Deltaic: {} Transitional - Tidal: {} Transitional - Lagoonal: {} Transitional - Beach: {} Transitional - Lake: {} Marine - Shallow: {} Marine - Deep: {} Marine - Reef: {} Other - Evaporite: {} Other - Glacial: {} Other - Volcanic: {} other: {} door_comp_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: metal covered: {} revolving: {} sliding: {} telescopic: {} door_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: damaged: {} needs repair: {} new: {} rupture: {} visible wear: {} door_direct_enum: from_schema: http://w3id.org/mixs/terms permissible_values: inward: {} outward: {} sideways: {} door_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} door_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: aluminum: {} cellular PVC: {} engineered plastic: {} fiberboard: {} fiberglass: {} metal: {} thermoplastic alloy: {} vinyl: {} wood: {} wood/plastic composite: {} door_move_enum: from_schema: http://w3id.org/mixs/terms permissible_values: collapsible: {} folding: {} revolving: {} rolling shutter: {} sliding: {} swinging: {} door_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: composite: {} metal: {} wooden: {} door_type_metal_enum: from_schema: http://w3id.org/mixs/terms permissible_values: collapsible: {} corrugated steel: {} hollow: {} rolling shutters: {} steel plate: {} door_type_wood_enum: from_schema: http://w3id.org/mixs/terms permissible_values: bettened and ledged: {} battened: {} ledged and braced: {} ledged and framed: {} ledged, braced and frame: {} framed and paneled: {} glashed or sash: {} flush: {} louvered: {} wire gauged: {} drainage_class_enum: from_schema: http://w3id.org/mixs/terms permissible_values: very poorly: {} poorly: {} somewhat poorly: {} moderately well: {} well: {} excessively drained: {} drawings_enum: from_schema: http://w3id.org/mixs/terms permissible_values: operation: {} as built: {} construction: {} bid: {} design: {} building navigation map: {} diagram: {} sketch: {} ext_wall_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} northeast: {} southeast: {} southwest: {} northwest: {} ext_window_orient_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} northeast: {} southeast: {} southwest: {} northwest: {} fao_class_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Acrisols: {} Andosols: {} Arenosols: {} Cambisols: {} Chernozems: {} Ferralsols: {} Fluvisols: {} Gleysols: {} Greyzems: {} Gypsisols: {} Histosols: {} Kastanozems: {} Lithosols: {} Luvisols: {} Nitosols: {} Phaeozems: {} Planosols: {} Podzols: {} Podzoluvisols: {} Rankers: {} Regosols: {} Rendzinas: {} Solonchaks: {} Solonetz: {} Vertisols: {} Yermosols: {} filter_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: particulate air filter: {} chemical air filter: {} low-MERV pleated media: {} HEPA: {} electrostatic: {} gas-phase or ultraviolet air treatments: {} floor_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: new: {} visible wear: {} needs repair: {} damaged: {} rupture: {} floor_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: tile: {} wood strip or parquet: {} carpet: {} rug: {} laminate wood: {} lineoleum: {} vinyl composition tile: {} sheet vinyl: {} stone: {} bamboo: {} cork: {} terrazo: {} concrete: {} none: {} sealed: {} clear finish: {} paint: {} none or unfinished: {} floor_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: balcony: {} floating floor: {} glass floor: {} raised floor: {} sprung floor: {} wood-framed: {} concrete: {} floor_water_mold_enum: from_schema: http://w3id.org/mixs/terms permissible_values: mold odor: {} wet floor: {} water stains: {} wall discoloration: {} floor discoloration: {} ceiling discoloration: {} peeling paint or wallpaper: {} bulging walls: {} condensation: {} freq_clean_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Daily: {} Weekly: {} Monthly: {} Quarterly: {} Annually: {} other: {} furniture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: cabinet: {} chair: {} desks: {} gender_restroom_enum: from_schema: http://w3id.org/mixs/terms permissible_values: all gender: {} female: {} gender neurtral: {} male: {} male and female: {} unisex: {} growth_habit_enum: from_schema: http://w3id.org/mixs/terms permissible_values: erect: {} semi-erect: {} spreading: {} prostrate: {} handidness_enum: from_schema: http://w3id.org/mixs/terms permissible_values: ambidexterity: {} left handedness: {} mixed-handedness: {} right handedness: {} hc_produced_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Oil: {} Gas-Condensate: {} Gas: {} Bitumen: {} Coalbed Methane: {} other: {} hcr_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Oil Reservoir: {} Gas Reservoir: {} Oil Sand: {} Coalbed: {} Shale: {} Tight Oil Reservoir: {} Tight Gas Reservoir: {} other: {} hcr_geol_age_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Archean: {} Cambrian: {} Carboniferous: {} Cenozoic: {} Cretaceous: {} Devonian: {} Jurassic: {} Mesozoic: {} Neogene: {} Ordovician: {} Paleogene: {} Paleozoic: {} Permian: {} Precambrian: {} Proterozoic: {} Silurian: {} Triassic: {} other: {} heat_cool_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: radiant system: {} heat pump: {} forced air system: {} steam forced heat: {} wood stove: {} heat_deliv_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} host_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: female: {} hermaphrodite: {} male: {} neuter: {} indoor_space_enum: from_schema: http://w3id.org/mixs/terms permissible_values: bedroom: {} office: {} bathroom: {} foyer: {} kitchen: {} locker room: {} hallway: {} elevator: {} indoor_surf_enum: from_schema: http://w3id.org/mixs/terms permissible_values: cabinet: {} ceiling: {} counter top: {} door: {} shelving: {} vent cover: {} window: {} wall: {} int_wall_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: new: {} visible wear: {} needs repair: {} damaged: {} rupture: {} light_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: natural light: {} electric light: {} desk lamp: {} flourescent lights: {} none: {} lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Basement: {} Chalk: {} Chert: {} Coal: {} Conglomerate: {} Diatomite: {} Dolomite: {} Limestone: {} Sandstone: {} Shale: {} Siltstone: {} Volcanic: {} other: {} mech_struc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: subway: {} coach: {} carriage: {} elevator: {} escalator: {} boat: {} train: {} car: {} bus: {} occup_document_enum: from_schema: http://w3id.org/mixs/terms permissible_values: automated count: {} estimate: {} manual count: {} videos: {} organism_count_enum: from_schema: http://w3id.org/mixs/terms permissible_values: ATP: {} MPN: {} other: {} oxy_stat_samp_enum: from_schema: http://w3id.org/mixs/terms permissible_values: aerobic: {} anaerobic: {} other: {} plant_growth_med_enum: from_schema: http://w3id.org/mixs/terms permissible_values: other artificial liquid medium: {} other artificial solid medium: {} peat moss: {} perlite: {} pumice: {} sand: {} soil: {} vermiculite: {} water: {} plant_sex_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Androdioecious: {} Androecious: {} Androgynous: {} Androgynomonoecious: {} Andromonoecious: {} Bisexual: {} Dichogamous: {} Diclinous: {} Dioecious: {} Gynodioecious: {} Gynoecious: {} Gynomonoecious: {} Hermaphroditic: {} Imperfect: {} Monoclinous: {} Monoecious: {} Perfect: {} Polygamodioecious: {} Polygamomonoecious: {} Polygamous: {} Protandrous: {} Protogynous: {} Subandroecious: {} Subdioecious: {} Subgynoecious: {} Synoecious: {} Trimonoecious: {} Trioecious: {} Unisexual: {} profile_position_enum: from_schema: http://w3id.org/mixs/terms permissible_values: summit: {} shoulder: {} backslope: {} footslope: {} toeslope: {} quad_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: North side: {} West side: {} South side: {} East side: {} rel_samp_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: edge of car: {} center of car: {} under a seat: {} room_condt_enum: from_schema: http://w3id.org/mixs/terms permissible_values: new: {} visible wear: {} needs repair: {} damaged: {} rupture: {} visible signs of mold/mildew: {} room_connected_enum: from_schema: http://w3id.org/mixs/terms permissible_values: attic: {} bathroom: {} closet: {} conference room: {} elevator: {} examining room: {} hallway: {} kitchen: {} mail room: {} office: {} stairwell: {} room_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: corner room: {} interior room: {} exterior wall: {} room_samp_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north corner: {} south corner: {} west corner: {} east corner: {} northeast corner: {} northwest corner: {} southeast corner: {} southwest corner: {} center: {} room_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: attic: {} bathroom: {} closet: {} conference room: {} elevator: {} examining room: {} hallway: {} kitchen: {} mail room: {} private office: {} open office: {} stairwell: {} ',restroom': {} lobby: {} vestibule: {} mechanical or electrical room: {} data center: {} laboratory_wet: {} laboratory_dry: {} gymnasium: {} natatorium: {} auditorium: {} lockers: {} cafe: {} warehouse: {} samp_capt_status_enum: from_schema: http://w3id.org/mixs/terms permissible_values: active surveillance in response to an outbreak: {} active surveillance not initiated by an outbreak: {} farm sample: {} market sample: {} other: {} samp_collect_point_enum: from_schema: http://w3id.org/mixs/terms permissible_values: well: {} test well: {} drilling rig: {} wellhead: {} separator: {} storage tank: {} other: {} samp_dis_stage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: dissemination: {} growth and reproduction: {} infection: {} inoculation: {} penetration: {} other: {} samp_floor_enum: from_schema: http://w3id.org/mixs/terms permissible_values: 1st floor: {} 2nd floor: {} basement: {} lobby: {} samp_md_enum: from_schema: http://w3id.org/mixs/terms permissible_values: DF: {} RT: {} KB: {} MSL: {} other: {} samp_subtype_enum: from_schema: http://w3id.org/mixs/terms permissible_values: oil phase: {} water phase: {} biofilm: {} not applicable: {} other: {} samp_weather_enum: from_schema: http://w3id.org/mixs/terms permissible_values: clear sky: {} cloudy: {} foggy: {} hail: {} rain: {} snow: {} sleet: {} sunny: {} windy: {} season_use_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Spring: {} Summer: {} Fall: {} Winter: {} sediment_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: biogenous: {} cosmogenous: {} hydrogenous: {} lithogenous: {} shading_device_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: damaged: {} needs repair: {} new: {} rupture: {} visible wear: {} shading_device_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: bahama shutters: {} exterior roll blind: {} gambrel awning: {} hood awning: {} porchroller awning: {} sarasota shutters: {} slatted aluminum: {} solid aluminum awning: {} sun screen: {} tree: {} trellis: {} venetian awning: {} soil_horizon_enum: from_schema: http://w3id.org/mixs/terms permissible_values: O horizon: {} A horizon: {} E horizon: {} B horizon: {} C horizon: {} R layer: {} Permafrost: {} M horizon: {} specific_enum: from_schema: http://w3id.org/mixs/terms permissible_values: operation: {} as built: {} construction: {} bid: {} design: {} photos: {} sr_dep_env_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Lacustine: {} Fluvioldeltaic: {} Fluviomarine: {} Marine: {} other: {} sr_geol_age_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Archean: {} Cambrian: {} Carboniferous: {} Cenozoic: {} Cretaceous: {} Devonian: {} Jurassic: {} Mesozoic: {} Neogene: {} Ordovician: {} Paleogene: {} Paleozoic: {} Permian: {} Precambrian: {} Proterozoic: {} Silurian: {} Triassic: {} other: {} sr_kerog_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Type I: {} Type II: {} Type III: {} Type IV: {} other: {} sr_lithology_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Clastic: {} Carbonate: {} Coal: {} Biosilicieous: {} other: {} substructure_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: crawlspace: {} slab on grade: {} basement: {} surf_air_cont_enum: from_schema: http://w3id.org/mixs/terms permissible_values: dust: {} organic matter: {} particulate matter: {} volatile organic compounds: {} biological contaminants: {} radon: {} nutrients: {} biocides: {} surf_material_enum: from_schema: http://w3id.org/mixs/terms permissible_values: adobe: {} carpet: {} cinder blocks: {} concrete: {} hay bales: {} glass: {} metal: {} paint: {} plastic: {} stainless steel: {} stone: {} stucco: {} tile: {} vinyl: {} wood: {} tidal_stage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: low tide: {} ebb tide: {} flood tide: {} high tide: {} tillage_enum: from_schema: http://w3id.org/mixs/terms permissible_values: drill: {} cutting disc: {} ridge till: {} strip tillage: {} zonal tillage: {} chisel: {} tined: {} mouldboard: {} disc plough: {} train_line_enum: from_schema: http://w3id.org/mixs/terms permissible_values: red: {} green: {} orange: {} train_stat_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: south station above ground: {} south station underground: {} south station amtrak: {} forest hills: {} riverside: {} train_stop_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: end: {} mid: {} downtown: {} vis_media_enum: from_schema: http://w3id.org/mixs/terms permissible_values: photos: {} videos: {} commonly of the building: {} site context (adjacent buildings, vegetation, terrain, streets): {} interiors: {} equipment: {} 3D scans: {} wall_const_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: frame construction: {} joisted masonry: {} light noncombustible: {} masonry noncombustible: {} modified fire resistive: {} fire resistive: {} wall_finish_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: plaster: {} gypsum plaster: {} veneer plaster: {} gypsum board: {} tile: {} terrazzo: {} stone facing: {} acoustical treatment: {} wood: {} metal: {} masonry: {} wall_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} wall_surf_treatment_enum: from_schema: http://w3id.org/mixs/terms permissible_values: painted: {} wall paper: {} no treatment: {} paneling: {} stucco: {} fabric: {} wall_texture_enum: from_schema: http://w3id.org/mixs/terms permissible_values: crows feet: {} crows-foot stomp: {} '': {} double skip: {} hawk and trowel: {} knockdown: {} popcorn: {} orange peel: {} rosebud stomp: {} Santa-Fe texture: {} skip trowel: {} smooth: {} stomp knockdown: {} swirl: {} water_feat_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: fountain: {} pool: {} standing feature: {} stream: {} waterfall: {} weekday_enum: from_schema: http://w3id.org/mixs/terms permissible_values: Monday: {} Tuesday: {} Wednesday: {} Thursday: {} Friday: {} Saturday: {} Sunday: {} window_cond_enum: from_schema: http://w3id.org/mixs/terms permissible_values: damaged: {} needs repair: {} new: {} rupture: {} visible wear: {} window_cover_enum: from_schema: http://w3id.org/mixs/terms permissible_values: blinds: {} curtains: {} none: {} window_horiz_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: left: {} middle: {} right: {} window_loc_enum: from_schema: http://w3id.org/mixs/terms permissible_values: north: {} south: {} east: {} west: {} window_mat_enum: from_schema: http://w3id.org/mixs/terms permissible_values: clad: {} fiberglass: {} metal: {} vinyl: {} wood: {} window_type_enum: from_schema: http://w3id.org/mixs/terms permissible_values: single-hung sash window: {} horizontal sash window: {} fixed window: {} window_vert_pos_enum: from_schema: http://w3id.org/mixs/terms permissible_values: bottom: {} middle: {} top: {} low: {} high: {} slots: abs_air_humidity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: gram per gram, kilogram per kilogram, kilogram, pound occurrence: tag: occurrence value: '1' description: Actual mass of water vapor - mh20 - present in the air water vapor mixture title: absolute air humidity examples: - value: 9 gram per gram from_schema: http://w3id.org/mixs/terms aliases: - absolute air humidity is_a: core field slot_uri: MIXS:0000122 range: QuantityValue multivalued: false add_recov_method: annotations: expected_value: tag: expected_value value: enumeration;timestamp occurrence: tag: occurrence value: '1' description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If "other" is specified, please propose entry in "additional info" field title: secondary and tertiary recovery methods and start date examples: - value: Polymer Addition;2018-06-21T14:30Z from_schema: http://w3id.org/mixs/terms aliases: - secondary and tertiary recovery methods and start date is_a: core field slot_uri: MIXS:0001009 range: TextValue multivalued: false additional_info: annotations: expected_value: tag: expected_value value: text occurrence: tag: occurrence value: '1' description: Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary title: additional info examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - additional info is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000300 range: TextValue multivalued: false address: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The street name and building number where the sampling occurred. title: address examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - address is_a: core field string_serialization: '{integer}{text}' slot_uri: MIXS:0000218 range: TextValue multivalued: false adj_room: annotations: expected_value: tag: expected_value value: room name;room number occurrence: tag: occurrence value: '1' description: List of rooms (room number, room name) immediately adjacent to the sampling room title: adjacent rooms examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - adjacent rooms is_a: core field string_serialization: '{text};{integer}' slot_uri: MIXS:0000219 range: TextValue multivalued: false aero_struc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together title: aerospace structure examples: - value: plane from_schema: http://w3id.org/mixs/terms aliases: - aerospace structure is_a: core field string_serialization: '[plane|glider]' slot_uri: MIXS:0000773 range: TextValue multivalued: false agrochem_addition: annotations: expected_value: tag: expected_value value: agrochemical name;agrochemical amount;timestamp preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Addition of fertilizers, pesticides, etc. - amount and time of applications title: history/agrochemical additions examples: - value: roundup;5 milligram per liter;2018-06-21 from_schema: http://w3id.org/mixs/terms aliases: - history/agrochemical additions is_a: core field string_serialization: '{text};{float} {unit};{timestamp}' slot_uri: MIXS:0000639 range: TextValue multivalued: true air_PM_concen: annotations: expected_value: tag: expected_value value: particulate matter name;measurement value preferred_unit: tag: preferred_unit value: micrograms per cubic meter occurrence: tag: occurrence value: m description: Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM title: air particulate matter concentration examples: - value: PM2.5;10 microgram per cubic meter from_schema: http://w3id.org/mixs/terms aliases: - air particulate matter concentration is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000108 range: TextValue multivalued: true air_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: Temperature of the air at the time of sampling title: air temperature examples: - value: 20 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - air temperature is_a: core field slot_uri: MIXS:0000124 range: QuantityValue multivalued: false air_temp_regm: annotations: expected_value: tag: expected_value value: temperature value;treatment interval and duration preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: m description: Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens title: air temperature regimen examples: - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - air temperature regimen is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000551 range: TextValue multivalued: true al_sat: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: percentage occurrence: tag: occurrence value: '1' description: Aluminum saturation (esp. For tropical soils) title: extreme_unusual_properties/Al saturation examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - extreme_unusual_properties/Al saturation is_a: core field slot_uri: MIXS:0000607 range: QuantityValue multivalued: false al_sat_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or URL occurrence: tag: occurrence value: '1' description: Reference or method used in determining Al saturation title: extreme_unusual_properties/Al saturation method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - extreme_unusual_properties/Al saturation method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000324 range: TextValue multivalued: false alkalinity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milliequivalent per liter, milligram per liter occurrence: tag: occurrence value: '1' description: Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate title: alkalinity examples: - value: 50 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - alkalinity is_a: core field slot_uri: MIXS:0000421 range: QuantityValue multivalued: false alkalinity_method: annotations: expected_value: tag: expected_value value: description of method occurrence: tag: occurrence value: '1' description: Method used for alkalinity measurement title: alkalinity method examples: - value: titration from_schema: http://w3id.org/mixs/terms aliases: - alkalinity method is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000298 range: TextValue multivalued: false alkyl_diethers: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: mole per liter occurrence: tag: occurrence value: '1' description: Concentration of alkyl diethers title: alkyl diethers examples: - value: 0.005 mole per liter from_schema: http://w3id.org/mixs/terms aliases: - alkyl diethers is_a: core field slot_uri: MIXS:0000490 range: QuantityValue multivalued: false alt: annotations: expected_value: tag: expected_value value: measurement value description: Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air title: altitude examples: - value: 100 meter from_schema: http://w3id.org/mixs/terms aliases: - altitude is_a: environment field slot_uri: MIXS:0000094 domain_of: - agriculture - air - built environment - core - food-animal and animal feed - food-farm environment - food-food production facility - food-human foods - host-associated - human-associated - human-gut - human-oral - human-skin - human-vaginal - hydrocarbon resources-cores - hydrocarbon resources-fluids_swabs - microbial mat_biofilm - miscellaneous natural or artificial environment - plant-associated - sediment - soil - symbiont-associated - wastewater_sludge - water range: QuantityValue multivalued: false aminopept_act: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: mole per liter per hour occurrence: tag: occurrence value: '1' description: Measurement of aminopeptidase activity title: aminopeptidase activity examples: - value: 0.269 mole per liter per hour from_schema: http://w3id.org/mixs/terms aliases: - aminopeptidase activity is_a: core field slot_uri: MIXS:0000172 range: QuantityValue multivalued: false ammonium: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of ammonium in the sample title: ammonium examples: - value: 1.5 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - ammonium is_a: core field slot_uri: MIXS:0000427 range: QuantityValue multivalued: false amount_light: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: lux, lumens per square meter occurrence: tag: occurrence value: '1' description: The unit of illuminance and luminous emittance, measuring luminous flux per unit area title: amount of light examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - amount of light is_a: core field slot_uri: MIXS:0000140 range: QuantityValue multivalued: false ances_data: annotations: expected_value: tag: expected_value value: free text occurrence: tag: occurrence value: '1' description: Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B) title: ancestral data examples: - value: A/3*B from_schema: http://w3id.org/mixs/terms aliases: - ancestral data is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000247 range: TextValue multivalued: false annual_precpt: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millimeter occurrence: tag: occurrence value: '1' description: The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps. title: mean annual precipitation examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - mean annual precipitation is_a: core field slot_uri: MIXS:0000644 range: QuantityValue multivalued: false annual_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: Mean annual temperature title: mean annual temperature examples: - value: 12.5 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - mean annual temperature is_a: core field slot_uri: MIXS:0000642 range: QuantityValue multivalued: false antibiotic_regm: annotations: expected_value: tag: expected_value value: antibiotic name;antibiotic amount;treatment interval and duration preferred_unit: tag: preferred_unit value: milligram occurrence: tag: occurrence value: m description: Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens title: antibiotic regimen examples: - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - antibiotic regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000553 range: TextValue multivalued: true api: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degrees API occurrence: tag: occurrence value: '1' description: 'API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1¬∞ API)' title: API gravity examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - API gravity is_a: core field slot_uri: MIXS:0000157 range: QuantityValue multivalued: false arch_struc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: An architectural structure is a human-made, free-standing, immobile outdoor construction title: architectural structure examples: - value: shed from_schema: http://w3id.org/mixs/terms aliases: - architectural structure is_a: core field slot_uri: MIXS:0000774 range: arch_struc_enum multivalued: false aromatics_pc: annotations: expected_value: tag: expected_value value: name;measurement value preferred_unit: tag: preferred_unit value: percent occurrence: tag: occurrence value: '1' description: 'Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: aromatics wt% examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - aromatics wt% is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000133 range: TextValue multivalued: false asphaltenes_pc: annotations: expected_value: tag: expected_value value: name;measurement value preferred_unit: tag: preferred_unit value: percent occurrence: tag: occurrence value: '1' description: 'Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: asphaltenes wt% examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - asphaltenes wt% is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000135 range: TextValue multivalued: false atmospheric_data: annotations: expected_value: tag: expected_value value: atmospheric data name;measurement value occurrence: tag: occurrence value: m description: Measurement of atmospheric data; can include multiple data title: atmospheric data examples: - value: wind speed;9 knots from_schema: http://w3id.org/mixs/terms aliases: - atmospheric data is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0001097 range: TextValue multivalued: true avg_dew_point: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day title: average dew point examples: - value: 25.5 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - average dew point is_a: core field slot_uri: MIXS:0000141 range: QuantityValue multivalued: false avg_occup: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room. title: average daily occupancy examples: - value: '2' from_schema: http://w3id.org/mixs/terms aliases: - average daily occupancy is_a: core field slot_uri: MIXS:0000775 range: TextValue multivalued: false avg_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day title: average temperature examples: - value: 12.5 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - average temperature is_a: core field slot_uri: MIXS:0000142 range: QuantityValue multivalued: false bac_prod: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per cubic meter per day occurrence: tag: occurrence value: '1' description: Bacterial production in the water column measured by isotope uptake title: bacterial production examples: - value: 5 milligram per cubic meter per day from_schema: http://w3id.org/mixs/terms aliases: - bacterial production is_a: core field slot_uri: MIXS:0000683 range: QuantityValue multivalued: false bac_resp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per cubic meter per day, micromole oxygen per liter per hour occurrence: tag: occurrence value: '1' description: Measurement of bacterial respiration in the water column title: bacterial respiration examples: - value: 300 micromole oxygen per liter per hour from_schema: http://w3id.org/mixs/terms aliases: - bacterial respiration is_a: core field slot_uri: MIXS:0000684 range: QuantityValue multivalued: false bacteria_carb_prod: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: nanogram per hour occurrence: tag: occurrence value: '1' description: Measurement of bacterial carbon production title: bacterial carbon production examples: - value: 2.53 microgram per liter per hour from_schema: http://w3id.org/mixs/terms aliases: - bacterial carbon production is_a: core field slot_uri: MIXS:0000173 range: QuantityValue multivalued: false barometric_press: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millibar occurrence: tag: occurrence value: '1' description: Force per unit area exerted against a surface by the weight of air above that surface title: barometric pressure examples: - value: 5 millibar from_schema: http://w3id.org/mixs/terms aliases: - barometric pressure is_a: core field slot_uri: MIXS:0000096 range: QuantityValue multivalued: false basin: annotations: expected_value: tag: expected_value value: name occurrence: tag: occurrence value: '1' description: Name of the basin (e.g. Campos) title: basin name examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - basin name is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000290 range: TextValue multivalued: false bathroom_count: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The number of bathrooms in the building title: bathroom count examples: - value: '1' from_schema: http://w3id.org/mixs/terms aliases: - bathroom count is_a: core field slot_uri: MIXS:0000776 range: TextValue multivalued: false bedroom_count: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The number of bedrooms in the building title: bedroom count examples: - value: '2' from_schema: http://w3id.org/mixs/terms aliases: - bedroom count is_a: core field slot_uri: MIXS:0000777 range: TextValue multivalued: false benzene: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of benzene in the sample title: benzene examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - benzene is_a: core field slot_uri: MIXS:0000153 range: QuantityValue multivalued: false biochem_oxygen_dem: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period title: biochemical oxygen demand examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - biochemical oxygen demand is_a: core field slot_uri: MIXS:0000653 range: QuantityValue multivalued: false biocide: annotations: expected_value: tag: expected_value value: name;name;timestamp occurrence: tag: occurrence value: '1' description: List of biocides (commercial name of product and supplier) and date of administration title: biocide administration examples: - value: ALPHA 1427;Baker Hughes;2008-01-23 from_schema: http://w3id.org/mixs/terms aliases: - biocide administration is_a: core field string_serialization: '{text};{text};{timestamp}' slot_uri: MIXS:0001011 range: TextValue multivalued: false biocide_admin_method: annotations: expected_value: tag: expected_value value: measurement value;frequency;duration;duration preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days) title: biocide administration method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - biocide administration method is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}' slot_uri: MIXS:0000456 range: TextValue multivalued: false biol_stat: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The level of genome modification. title: biological status examples: - value: natural from_schema: http://w3id.org/mixs/terms aliases: - biological status is_a: core field slot_uri: MIXS:0000858 range: biol_stat_enum multivalued: false biomass: annotations: expected_value: tag: expected_value value: biomass type;measurement value preferred_unit: tag: preferred_unit value: ton, kilogram, gram occurrence: tag: occurrence value: m description: Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements title: biomass examples: - value: total;20 gram from_schema: http://w3id.org/mixs/terms aliases: - biomass is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000174 range: TextValue multivalued: true biotic_regm: annotations: expected_value: tag: expected_value value: free text occurrence: tag: occurrence value: '1' description: Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi. title: biotic regimen examples: - value: sample inoculated with Rhizobium spp. Culture from_schema: http://w3id.org/mixs/terms aliases: - biotic regimen is_a: core field string_serialization: '{text}' slot_uri: MIXS:0001038 range: TextValue multivalued: false biotic_relationship: annotations: expected_value: tag: expected_value value: enumeration description: Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object title: observed biotic relationship examples: - value: free living from_schema: http://w3id.org/mixs/terms aliases: - observed biotic relationship is_a: nucleic acid sequence source field slot_uri: MIXS:0000028 range: biotic_relationship_enum multivalued: false bishomohopanol: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, microgram per gram occurrence: tag: occurrence value: '1' description: Concentration of bishomohopanol title: bishomohopanol examples: - value: 14 microgram per liter from_schema: http://w3id.org/mixs/terms aliases: - bishomohopanol is_a: core field slot_uri: MIXS:0000175 range: QuantityValue multivalued: false blood_press_diast: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millimeter mercury occurrence: tag: occurrence value: '1' description: Resting diastolic blood pressure, measured as mm mercury title: host blood pressure diastolic examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - host blood pressure diastolic is_a: core field slot_uri: MIXS:0000258 range: QuantityValue multivalued: false blood_press_syst: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millimeter mercury occurrence: tag: occurrence value: '1' description: Resting systolic blood pressure, measured as mm mercury title: host blood pressure systolic examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - host blood pressure systolic is_a: core field slot_uri: MIXS:0000259 range: QuantityValue multivalued: false bromide: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: parts per million occurrence: tag: occurrence value: '1' description: Concentration of bromide title: bromide examples: - value: 0.05 parts per million from_schema: http://w3id.org/mixs/terms aliases: - bromide is_a: core field slot_uri: MIXS:0000176 range: QuantityValue multivalued: false build_docs: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The building design, construction and operation documents title: design, construction, and operation documents examples: - value: maintenance plans from_schema: http://w3id.org/mixs/terms aliases: - design, construction, and operation documents is_a: core field slot_uri: MIXS:0000787 range: build_docs_enum multivalued: false build_occup_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: m description: The primary function for which a building or discrete part of a building is intended to be used title: building occupancy type examples: - value: market from_schema: http://w3id.org/mixs/terms aliases: - building occupancy type is_a: core field slot_uri: MIXS:0000761 range: build_occup_type_enum multivalued: true building_setting: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: A location (geography) where a building is set title: building setting examples: - value: rural from_schema: http://w3id.org/mixs/terms aliases: - building setting is_a: core field slot_uri: MIXS:0000768 range: building_setting_enum multivalued: false built_struc_age: annotations: expected_value: tag: expected_value value: value preferred_unit: tag: preferred_unit value: year occurrence: tag: occurrence value: '1' description: The age of the built structure since construction title: built structure age examples: - value: '15' from_schema: http://w3id.org/mixs/terms aliases: - built structure age is_a: core field slot_uri: MIXS:0000145 range: QuantityValue multivalued: false built_struc_set: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The characterization of the location of the built structure as high or low human density title: built structure setting examples: - value: rural from_schema: http://w3id.org/mixs/terms aliases: - built structure setting is_a: core field string_serialization: '[urban|rural]' slot_uri: MIXS:0000778 range: TextValue multivalued: false built_struc_type: annotations: expected_value: tag: expected_value value: free text occurrence: tag: occurrence value: '1' description: A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads title: built structure type examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - built structure type is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000721 range: TextValue multivalued: false calcium: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, micromole per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of calcium in the sample title: calcium examples: - value: 0.2 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - calcium is_a: core field slot_uri: MIXS:0000432 range: QuantityValue multivalued: false carb_dioxide: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, parts per million occurrence: tag: occurrence value: '1' description: Carbon dioxide (gas) amount or concentration at the time of sampling title: carbon dioxide examples: - value: 410 parts per million from_schema: http://w3id.org/mixs/terms aliases: - carbon dioxide is_a: core field slot_uri: MIXS:0000097 range: QuantityValue multivalued: false carb_monoxide: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, parts per million occurrence: tag: occurrence value: '1' description: Carbon monoxide (gas) amount or concentration at the time of sampling title: carbon monoxide examples: - value: 0.1 parts per million from_schema: http://w3id.org/mixs/terms aliases: - carbon monoxide is_a: core field slot_uri: MIXS:0000098 range: QuantityValue multivalued: false carb_nitro_ratio: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: Ratio of amount or concentrations of carbon to nitrogen title: carbon/nitrogen ratio examples: - value: '0.417361111' from_schema: http://w3id.org/mixs/terms aliases: - carbon/nitrogen ratio is_a: core field slot_uri: MIXS:0000310 range: QuantityValue multivalued: false ceil_area: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: square meter occurrence: tag: occurrence value: '1' description: The area of the ceiling space within the room title: ceiling area examples: - value: 25 square meter from_schema: http://w3id.org/mixs/terms aliases: - ceiling area is_a: core field slot_uri: MIXS:0000148 range: QuantityValue multivalued: false ceil_cond: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas title: ceiling condition examples: - value: damaged from_schema: http://w3id.org/mixs/terms aliases: - ceiling condition is_a: core field slot_uri: MIXS:0000779 range: ceil_cond_enum multivalued: false ceil_finish_mat: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of material used to finish a ceiling title: ceiling finish material examples: - value: stucco from_schema: http://w3id.org/mixs/terms aliases: - ceiling finish material is_a: core field slot_uri: MIXS:0000780 range: ceil_finish_mat_enum multivalued: false ceil_struc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The construction format of the ceiling title: ceiling structure examples: - value: concrete from_schema: http://w3id.org/mixs/terms aliases: - ceiling structure is_a: core field string_serialization: '[wood frame|concrete]' slot_uri: MIXS:0000782 range: TextValue multivalued: false ceil_texture: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The feel, appearance, or consistency of a ceiling surface title: ceiling texture examples: - value: popcorn from_schema: http://w3id.org/mixs/terms aliases: - ceiling texture is_a: core field slot_uri: MIXS:0000783 range: ceil_texture_enum multivalued: false ceil_thermal_mass: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: joule per degree Celsius occurrence: tag: occurrence value: '1' description: The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow title: ceiling thermal mass examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - ceiling thermal mass is_a: core field slot_uri: MIXS:0000143 range: QuantityValue multivalued: false ceil_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of ceiling according to the ceiling's appearance or construction title: ceiling type examples: - value: coffered from_schema: http://w3id.org/mixs/terms aliases: - ceiling type is_a: core field slot_uri: MIXS:0000784 range: ceil_type_enum multivalued: false ceil_water_mold: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Signs of the presence of mold or mildew on the ceiling title: ceiling signs of water/mold examples: - value: presence of mold visible from_schema: http://w3id.org/mixs/terms aliases: - ceiling signs of water/mold is_a: core field string_serialization: '[presence of mold visible|no presence of mold visible]' slot_uri: MIXS:0000781 range: TextValue multivalued: false chem_administration: annotations: expected_value: tag: expected_value value: CHEBI;timestamp occurrence: tag: occurrence value: m description: List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi title: chemical administration examples: - value: agar [CHEBI:2509];2018-05-11T20:00Z from_schema: http://w3id.org/mixs/terms aliases: - chemical administration is_a: core field string_serialization: '{termLabel} {[termID]};{timestamp}' slot_uri: MIXS:0000751 range: ControlledTermValue multivalued: true chem_mutagen: annotations: expected_value: tag: expected_value value: mutagen name;mutagen amount;treatment interval and duration preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: m description: Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens title: chemical mutagen examples: - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - chemical mutagen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000555 range: TextValue multivalued: true chem_oxygen_dem: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite title: chemical oxygen demand examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - chemical oxygen demand is_a: core field slot_uri: MIXS:0000656 range: QuantityValue multivalued: false chem_treat_method: annotations: expected_value: tag: expected_value value: measurement value;frequency;duration;duration preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days) title: chemical treatment method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - chemical treatment method is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}' slot_uri: MIXS:0000457 range: string multivalued: false chem_treatment: annotations: expected_value: tag: expected_value value: name;name;timestamp occurrence: tag: occurrence value: '1' description: List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included title: chemical treatment examples: - value: ACCENT 1125;DOW;2010-11-17 from_schema: http://w3id.org/mixs/terms aliases: - chemical treatment is_a: core field string_serialization: '{text};{text};{timestamp}' slot_uri: MIXS:0001012 range: TextValue multivalued: false chimera_check: annotations: expected_value: tag: expected_value value: name and version of software, parameters used description: Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences. title: chimera check software examples: - value: uchime;v4.1;default parameters from_schema: http://w3id.org/mixs/terms aliases: - chimera check software is_a: sequencing field string_serialization: '{software};{version};{parameters}' slot_uri: MIXS:0000052 range: TextValue multivalued: false chloride: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of chloride in the sample title: chloride examples: - value: 5000 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - chloride is_a: core field slot_uri: MIXS:0000429 range: QuantityValue multivalued: false chlorophyll: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per cubic meter, microgram per liter occurrence: tag: occurrence value: '1' description: Concentration of chlorophyll title: chlorophyll examples: - value: 5 milligram per cubic meter from_schema: http://w3id.org/mixs/terms aliases: - chlorophyll is_a: core field slot_uri: MIXS:0000177 range: QuantityValue multivalued: false climate_environment: annotations: expected_value: tag: expected_value value: climate name;treatment interval and duration occurrence: tag: occurrence value: m description: Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates title: climate environment examples: - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - climate environment is_a: core field string_serialization: '{text};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0001040 range: TextValue multivalued: true collection_date: annotations: expected_value: tag: expected_value value: date and time description: 'The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant' title: collection date examples: - value: 2018-05-11T10:00:00+01:00; 2018-05-11 from_schema: http://w3id.org/mixs/terms aliases: - collection date is_a: environment field slot_uri: MIXS:0000011 range: TimestampValue multivalued: false conduc: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milliSiemens per centimeter occurrence: tag: occurrence value: '1' description: Electrical conductivity of water title: conductivity examples: - value: 10 milliSiemens per centimeter from_schema: http://w3id.org/mixs/terms aliases: - conductivity is_a: core field slot_uri: MIXS:0000692 range: QuantityValue multivalued: false cool_syst_id: annotations: expected_value: tag: expected_value value: unique identifier occurrence: tag: occurrence value: '1' description: The cooling system identifier title: cooling system identifier examples: - value: '12345' from_schema: http://w3id.org/mixs/terms aliases: - cooling system identifier is_a: core field slot_uri: MIXS:0000785 range: TextValue multivalued: false crop_rotation: annotations: expected_value: tag: expected_value value: crop rotation status;schedule occurrence: tag: occurrence value: '1' description: Whether or not crop is rotated, and if yes, rotation schedule title: history/crop rotation examples: - value: yes;R2/2017-01-01/2018-12-31/P6M from_schema: http://w3id.org/mixs/terms aliases: - history/crop rotation is_a: core field string_serialization: '{boolean};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000318 range: TextValue multivalued: false cult_root_med: annotations: expected_value: tag: expected_value value: name, PMID,DOI or url occurrence: tag: occurrence value: '1' description: Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors. title: culture rooting medium examples: - value: http://himedialabs.com/TD/PT158.pdf from_schema: http://w3id.org/mixs/terms aliases: - culture rooting medium is_a: core field string_serialization: '{text}|{PMID}|{DOI}|{URL}' slot_uri: MIXS:0001041 range: TextValue multivalued: false cur_land_use: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Present state of sample site title: current land use examples: - value: conifers from_schema: http://w3id.org/mixs/terms aliases: - current land use is_a: core field slot_uri: MIXS:0001080 range: cur_land_use_enum multivalued: false cur_vegetation: annotations: expected_value: tag: expected_value value: current vegetation type occurrence: tag: occurrence value: '1' description: Vegetation classification from one or more standard classification systems, or agricultural crop title: current vegetation examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - current vegetation is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000312 range: TextValue multivalued: false cur_vegetation_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in vegetation classification title: current vegetation method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - current vegetation method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000314 range: TextValue multivalued: false date_last_rain: annotations: expected_value: tag: expected_value value: timestamp occurrence: tag: occurrence value: '1' description: The date of the last time it rained title: date last rain examples: - value: 2018-05-11:T14:30Z from_schema: http://w3id.org/mixs/terms aliases: - date last rain is_a: core field slot_uri: MIXS:0000786 range: TimestampValue multivalued: false density: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: gram per cubic meter, gram per cubic centimeter occurrence: tag: occurrence value: '1' description: Density of the sample, which is its mass per unit volume (aka volumetric mass density) title: density examples: - value: 1000 kilogram per cubic meter from_schema: http://w3id.org/mixs/terms aliases: - density is_a: core field slot_uri: MIXS:0000435 range: QuantityValue multivalued: false depos_env: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If "other" is specified, please propose entry in "additional info" field title: depositional environment examples: - value: Continental - Alluvial from_schema: http://w3id.org/mixs/terms aliases: - depositional environment is_a: core field slot_uri: MIXS:0000992 range: depos_env_enum multivalued: false depth: annotations: expected_value: tag: expected_value value: measurement value description: The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples. title: depth examples: - value: 10 meter from_schema: http://w3id.org/mixs/terms aliases: - depth is_a: environment field slot_uri: MIXS:0000018 range: QuantityValue multivalued: false dew_point: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water. title: dew point examples: - value: 22 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - dew point is_a: core field slot_uri: MIXS:0000129 range: QuantityValue multivalued: false diether_lipids: annotations: expected_value: tag: expected_value value: diether lipid name;measurement value preferred_unit: tag: preferred_unit value: nanogram per liter occurrence: tag: occurrence value: m description: Concentration of diether lipids; can include multiple types of diether lipids title: diether lipids examples: - value: 0.2 nanogram per liter from_schema: http://w3id.org/mixs/terms aliases: - diether lipids is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000178 range: TextValue multivalued: true diss_carb_dioxide: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter occurrence: tag: occurrence value: '1' description: Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample title: dissolved carbon dioxide examples: - value: 5 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - dissolved carbon dioxide is_a: core field slot_uri: MIXS:0000436 range: QuantityValue multivalued: false diss_hydrogen: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of dissolved hydrogen title: dissolved hydrogen examples: - value: 0.3 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - dissolved hydrogen is_a: core field slot_uri: MIXS:0000179 range: QuantityValue multivalued: false diss_inorg_carb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter title: dissolved inorganic carbon examples: - value: 2059 micromole per kilogram from_schema: http://w3id.org/mixs/terms aliases: - dissolved inorganic carbon is_a: core field slot_uri: MIXS:0000434 range: QuantityValue multivalued: false diss_inorg_nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of dissolved inorganic nitrogen title: dissolved inorganic nitrogen examples: - value: 761 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - dissolved inorganic nitrogen is_a: core field slot_uri: MIXS:0000698 range: QuantityValue multivalued: false diss_inorg_phosp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of dissolved inorganic phosphorus in the sample title: dissolved inorganic phosphorus examples: - value: 56.5 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - dissolved inorganic phosphorus is_a: core field slot_uri: MIXS:0000106 range: QuantityValue multivalued: false diss_iron: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Concentration of dissolved iron in the sample title: dissolved iron examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - dissolved iron is_a: core field slot_uri: MIXS:0000139 range: QuantityValue multivalued: false diss_org_carb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter occurrence: tag: occurrence value: '1' description: Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid title: dissolved organic carbon examples: - value: 197 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - dissolved organic carbon is_a: core field slot_uri: MIXS:0000433 range: QuantityValue multivalued: false diss_org_nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, milligram per liter occurrence: tag: occurrence value: '1' description: Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2 title: dissolved organic nitrogen examples: - value: 0.05 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - dissolved organic nitrogen is_a: core field slot_uri: MIXS:0000162 range: QuantityValue multivalued: false diss_oxygen: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per kilogram, milligram per liter occurrence: tag: occurrence value: '1' description: Concentration of dissolved oxygen title: dissolved oxygen examples: - value: 175 micromole per kilogram from_schema: http://w3id.org/mixs/terms aliases: - dissolved oxygen is_a: core field slot_uri: MIXS:0000119 range: QuantityValue multivalued: false diss_oxygen_fluid: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per kilogram, milligram per liter occurrence: tag: occurrence value: '1' description: Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic). title: dissolved oxygen in fluids examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - dissolved oxygen in fluids is_a: core field slot_uri: MIXS:0000438 range: QuantityValue multivalued: false door_comp_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The composite type of the door title: door type, composite examples: - value: revolving from_schema: http://w3id.org/mixs/terms aliases: - door type, composite is_a: core field slot_uri: MIXS:0000795 range: door_comp_type_enum multivalued: false door_cond: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The phsical condition of the door title: door condition examples: - value: new from_schema: http://w3id.org/mixs/terms aliases: - door condition is_a: core field slot_uri: MIXS:0000788 range: door_cond_enum multivalued: false door_direct: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The direction the door opens title: door direction of opening examples: - value: inward from_schema: http://w3id.org/mixs/terms aliases: - door direction of opening is_a: core field slot_uri: MIXS:0000789 range: door_direct_enum multivalued: false door_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The relative location of the door in the room title: door location examples: - value: north from_schema: http://w3id.org/mixs/terms aliases: - door location is_a: core field slot_uri: MIXS:0000790 range: door_loc_enum multivalued: false door_mat: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The material the door is composed of title: door material examples: - value: wood from_schema: http://w3id.org/mixs/terms aliases: - door material is_a: core field slot_uri: MIXS:0000791 range: door_mat_enum multivalued: false door_move: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of movement of the door title: door movement examples: - value: swinging from_schema: http://w3id.org/mixs/terms aliases: - door movement is_a: core field slot_uri: MIXS:0000792 range: door_move_enum multivalued: false door_size: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: square meter occurrence: tag: occurrence value: '1' description: The size of the door title: door area or size examples: - value: 2.5 square meter from_schema: http://w3id.org/mixs/terms aliases: - door area or size is_a: core field slot_uri: MIXS:0000158 range: QuantityValue multivalued: false door_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of door material title: door type examples: - value: wooden from_schema: http://w3id.org/mixs/terms aliases: - door type is_a: core field slot_uri: MIXS:0000794 range: door_type_enum multivalued: false door_type_metal: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of metal door title: door type, metal examples: - value: hollow from_schema: http://w3id.org/mixs/terms aliases: - door type, metal is_a: core field slot_uri: MIXS:0000796 range: door_type_metal_enum multivalued: false door_type_wood: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of wood door title: door type, wood examples: - value: battened from_schema: http://w3id.org/mixs/terms aliases: - door type, wood is_a: core field slot_uri: MIXS:0000797 range: door_type_wood_enum multivalued: false door_water_mold: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Signs of the presence of mold or mildew on a door title: door signs of water/mold examples: - value: presence of mold visible from_schema: http://w3id.org/mixs/terms aliases: - door signs of water/mold is_a: core field string_serialization: '[presence of mold visible|no presence of mold visible]' slot_uri: MIXS:0000793 range: TextValue multivalued: false down_par: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microEinstein per square meter per second, microEinstein per square centimeter per second occurrence: tag: occurrence value: '1' description: Visible waveband radiance and irradiance measurements in the water column title: downward PAR examples: - value: 28.71 microEinstein per square meter per second from_schema: http://w3id.org/mixs/terms aliases: - downward PAR is_a: core field slot_uri: MIXS:0000703 range: QuantityValue multivalued: false drainage_class: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Drainage classification from a standard system such as the USDA system title: drainage classification examples: - value: well from_schema: http://w3id.org/mixs/terms aliases: - drainage classification is_a: core field slot_uri: MIXS:0001085 range: drainage_class_enum multivalued: false drawings: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents title: drawings examples: - value: sketch from_schema: http://w3id.org/mixs/terms aliases: - drawings is_a: core field slot_uri: MIXS:0000798 range: drawings_enum multivalued: false efficiency_percent: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: '1' description: Percentage of volatile solids removed from the anaerobic digestor title: efficiency percent examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - efficiency percent is_a: core field slot_uri: MIXS:0000657 range: QuantityValue multivalued: false elev: annotations: expected_value: tag: expected_value value: measurement value description: Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation examples: - value: 100 meter from_schema: http://w3id.org/mixs/terms aliases: - elevation is_a: environment field slot_uri: MIXS:0000093 range: float multivalued: false elevator: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The number of elevators within the built structure title: elevator count examples: - value: '2' from_schema: http://w3id.org/mixs/terms aliases: - elevator count is_a: core field slot_uri: MIXS:0000799 range: TextValue multivalued: false emulsions: annotations: expected_value: tag: expected_value value: emulsion name;measurement value preferred_unit: tag: preferred_unit value: gram per liter occurrence: tag: occurrence value: m description: Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types title: emulsions examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - emulsions is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000660 range: TextValue multivalued: true env_broad_scale: annotations: expected_value: tag: expected_value value: The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes. tooltip: The biome or major environmental system where the sample or specimen originated. Choose values from subclasses of the 'biome' class [ENVO:00000428] in the Environment Ontology (ENVO). For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to describe the broad anatomical or morphological context description: 'Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS' title: broad-scale environmental context examples: - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean from_schema: http://w3id.org/mixs/terms aliases: - broad-scale environmental context is_a: environment field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000012 range: ControlledIdentifiedTermValue multivalued: false env_local_scale: annotations: expected_value: tag: expected_value value: Environmental entities having causal influences upon the entity at time of sampling. tooltip: The specific environmental entities or features near the sample or specimen that significantly influence its characteristics or composition. These entities are typically smaller in scale than the broad environmental context. Values for this field should be countable, material nouns and must be chosen from subclasses of BFO:0000040 (material entity) that appear in the Environment Ontology (ENVO). For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to describe specific anatomical structures or plant parts. description: 'Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.' title: local environmental context examples: - value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336].' from_schema: http://w3id.org/mixs/terms aliases: - local environmental context is_a: environment field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000013 range: ControlledIdentifiedTermValue multivalued: false env_medium: annotations: expected_value: tag: expected_value value: The material displaced by the entity at time of sampling. Recommend subclasses of environmental material [ENVO:00010483]. tooltip: The predominant environmental material or substrate that directly surrounds or hosts the sample or specimen at the time of sampling. Choose values from subclasses of the 'environmental material' class [ENVO:00010483] in the Environment Ontology (ENVO). Values for this field should be measurable or mass material nouns, representing continuous environmental materials. For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to indicate a tissue, organ, or plant structure description: 'Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top).' title: environmental medium examples: - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]' from_schema: http://w3id.org/mixs/terms aliases: - environmental medium is_a: environment field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000014 range: ControlledIdentifiedTermValue multivalued: false escalator: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The number of escalators within the built structure title: escalator count examples: - value: '4' from_schema: http://w3id.org/mixs/terms aliases: - escalator count is_a: core field slot_uri: MIXS:0000800 range: TextValue multivalued: false ethylbenzene: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of ethylbenzene in the sample title: ethylbenzene examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - ethylbenzene is_a: core field slot_uri: MIXS:0000155 range: QuantityValue multivalued: false exp_duct: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: square meter occurrence: tag: occurrence value: '1' description: The amount of exposed ductwork in the room title: exposed ductwork examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - exposed ductwork is_a: core field slot_uri: MIXS:0000144 range: QuantityValue multivalued: false exp_pipe: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: The number of exposed pipes in the room title: exposed pipes examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - exposed pipes is_a: core field slot_uri: MIXS:0000220 range: QuantityValue multivalued: false experimental_factor: annotations: expected_value: tag: expected_value value: text or EFO and/or OBI description: Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI title: experimental factor examples: - value: time series design [EFO:EFO_0001779] from_schema: http://w3id.org/mixs/terms aliases: - experimental factor is_a: investigation field string_serialization: '{termLabel} {[termID]}|{text}' slot_uri: MIXS:0000008 range: ControlledTermValue multivalued: false ext_door: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The number of exterior doors in the built structure title: exterior door count examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - exterior door count is_a: core field slot_uri: MIXS:0000170 range: TextValue multivalued: false ext_wall_orient: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The orientation of the exterior wall title: orientations of exterior wall examples: - value: northwest from_schema: http://w3id.org/mixs/terms aliases: - orientations of exterior wall is_a: core field slot_uri: MIXS:0000817 range: ext_wall_orient_enum multivalued: false ext_window_orient: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The compass direction the exterior window of the room is facing title: orientations of exterior window examples: - value: southwest from_schema: http://w3id.org/mixs/terms aliases: - orientations of exterior window is_a: core field slot_uri: MIXS:0000818 range: ext_window_orient_enum multivalued: false extreme_event: annotations: expected_value: tag: expected_value value: date occurrence: tag: occurrence value: '1' description: Unusual physical events that may have affected microbial populations title: history/extreme events examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - history/extreme events is_a: core field slot_uri: MIXS:0000320 range: string multivalued: false fao_class: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups title: soil_taxonomic/FAO classification examples: - value: Luvisols from_schema: http://w3id.org/mixs/terms aliases: - soil_taxonomic/FAO classification is_a: core field slot_uri: MIXS:0001083 range: fao_class_enum multivalued: false fertilizer_regm: annotations: expected_value: tag: expected_value value: fertilizer name;fertilizer amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens title: fertilizer regimen examples: - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - fertilizer regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000556 range: TextValue multivalued: true field: annotations: expected_value: tag: expected_value value: name occurrence: tag: occurrence value: '1' description: Name of the hydrocarbon field (e.g. Albacora) title: field name examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - field name is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000291 range: TextValue multivalued: false filter_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: m description: A device which removes solid particulates or airborne molecular contaminants title: filter type examples: - value: HEPA from_schema: http://w3id.org/mixs/terms aliases: - filter type is_a: core field slot_uri: MIXS:0000765 range: filter_type_enum multivalued: true fire: annotations: expected_value: tag: expected_value value: date occurrence: tag: occurrence value: '1' description: Historical and/or physical evidence of fire title: history/fire examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - history/fire is_a: core field slot_uri: MIXS:0001086 range: string multivalued: false fireplace_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: A firebox with chimney title: fireplace type examples: - value: wood burning from_schema: http://w3id.org/mixs/terms aliases: - fireplace type is_a: core field string_serialization: '[gas burning|wood burning]' slot_uri: MIXS:0000802 range: TextValue multivalued: false flooding: annotations: expected_value: tag: expected_value value: date occurrence: tag: occurrence value: '1' description: Historical and/or physical evidence of flooding title: history/flooding examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - history/flooding is_a: core field slot_uri: MIXS:0000319 range: string multivalued: false floor_age: annotations: expected_value: tag: expected_value value: value preferred_unit: tag: preferred_unit value: years, weeks, days occurrence: tag: occurrence value: '1' description: The time period since installment of the carpet or flooring title: floor age examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - floor age is_a: core field slot_uri: MIXS:0000164 range: QuantityValue multivalued: false floor_area: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: square meter occurrence: tag: occurrence value: '1' description: The area of the floor space within the room title: floor area examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - floor area is_a: core field slot_uri: MIXS:0000165 range: QuantityValue multivalued: false floor_cond: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas title: floor condition examples: - value: new from_schema: http://w3id.org/mixs/terms aliases: - floor condition is_a: core field slot_uri: MIXS:0000803 range: floor_cond_enum multivalued: false floor_count: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The number of floors in the building, including basements and mechanical penthouse title: floor count examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - floor count is_a: core field slot_uri: MIXS:0000225 range: TextValue multivalued: false floor_finish_mat: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The floor covering type; the finished surface that is walked on title: floor finish material examples: - value: carpet from_schema: http://w3id.org/mixs/terms aliases: - floor finish material is_a: core field slot_uri: MIXS:0000804 range: floor_finish_mat_enum multivalued: false floor_struc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Refers to the structural elements and subfloor upon which the finish flooring is installed title: floor structure examples: - value: concrete from_schema: http://w3id.org/mixs/terms aliases: - floor structure is_a: core field slot_uri: MIXS:0000806 range: floor_struc_enum multivalued: false floor_thermal_mass: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: joule per degree Celsius occurrence: tag: occurrence value: '1' description: The ability of the floor to provide inertia against temperature fluctuations title: floor thermal mass examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - floor thermal mass is_a: core field slot_uri: MIXS:0000166 range: QuantityValue multivalued: false floor_water_mold: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Signs of the presence of mold or mildew in a room title: floor signs of water/mold examples: - value: ceiling discoloration from_schema: http://w3id.org/mixs/terms aliases: - floor signs of water/mold is_a: core field slot_uri: MIXS:0000805 range: floor_water_mold_enum multivalued: false fluor: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram chlorophyll a per cubic meter, volts occurrence: tag: occurrence value: '1' description: Raw or converted fluorescence of water title: fluorescence examples: - value: 2.5 volts from_schema: http://w3id.org/mixs/terms aliases: - fluorescence is_a: core field slot_uri: MIXS:0000704 range: QuantityValue multivalued: false freq_clean: annotations: expected_value: tag: expected_value value: enumeration or {text} occurrence: tag: occurrence value: '1' description: The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually. title: frequency of cleaning examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - frequency of cleaning is_a: core field slot_uri: MIXS:0000226 range: QuantityValue multivalued: false freq_cook: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: The number of times a meal is cooked per week title: frequency of cooking examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - frequency of cooking is_a: core field slot_uri: MIXS:0000227 range: QuantityValue multivalued: false fungicide_regm: annotations: expected_value: tag: expected_value value: fungicide name;fungicide amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens title: fungicide regimen examples: - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - fungicide regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000557 range: TextValue multivalued: true furniture: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The types of furniture present in the sampled room title: furniture examples: - value: chair from_schema: http://w3id.org/mixs/terms aliases: - furniture is_a: core field slot_uri: MIXS:0000807 range: furniture_enum multivalued: false gaseous_environment: annotations: expected_value: tag: expected_value value: gaseous compound name;gaseous compound amount;treatment interval and duration preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: m description: Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens title: gaseous environment examples: - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - gaseous environment is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000558 range: TextValue multivalued: true gaseous_substances: annotations: expected_value: tag: expected_value value: gaseous substance name;measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: m description: Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances title: gaseous substances examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - gaseous substances is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000661 range: TextValue multivalued: true gender_restroom: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The gender type of the restroom title: gender of restroom examples: - value: male from_schema: http://w3id.org/mixs/terms aliases: - gender of restroom is_a: core field slot_uri: MIXS:0000808 range: gender_restroom_enum multivalued: false genetic_mod: annotations: expected_value: tag: expected_value value: PMID,DOI,url or free text occurrence: tag: occurrence value: '1' description: Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection title: genetic modification examples: - value: aox1A transgenic from_schema: http://w3id.org/mixs/terms aliases: - genetic modification is_a: core field string_serialization: '{PMID}|{DOI}|{URL}|{text}' slot_uri: MIXS:0000859 range: TextValue multivalued: false geo_loc_name: annotations: expected_value: tag: expected_value value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location name' description: The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ) title: geographic location (country and/or sea,region) examples: - value: 'USA: Maryland, Bethesda' from_schema: http://w3id.org/mixs/terms aliases: - geographic location (country and/or sea,region) is_a: environment field string_serialization: '{term}: {term}, {text}' slot_uri: MIXS:0000010 range: TextValue multivalued: false glucosidase_act: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: mol per liter per hour occurrence: tag: occurrence value: '1' description: Measurement of glucosidase activity title: glucosidase activity examples: - value: 5 mol per liter per hour from_schema: http://w3id.org/mixs/terms aliases: - glucosidase activity is_a: core field slot_uri: MIXS:0000137 range: QuantityValue multivalued: false gravidity: annotations: expected_value: tag: expected_value value: gravidity status;timestamp occurrence: tag: occurrence value: '1' description: Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used title: gravidity examples: - value: yes;due date:2018-05-11 from_schema: http://w3id.org/mixs/terms aliases: - gravidity is_a: core field string_serialization: '{boolean};{timestamp}' slot_uri: MIXS:0000875 range: TextValue multivalued: false gravity: annotations: expected_value: tag: expected_value value: gravity factor value;treatment interval and duration preferred_unit: tag: preferred_unit value: meter per square second, g occurrence: tag: occurrence value: m description: Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments title: gravity examples: - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - gravity is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000559 range: TextValue multivalued: true growth_facil: annotations: expected_value: tag: expected_value value: free text or CO occurrence: tag: occurrence value: '1' description: 'Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research' title: growth facility examples: - value: Growth chamber [CO_715:0000189] from_schema: http://w3id.org/mixs/terms aliases: - growth facility is_a: core field string_serialization: '{text}|{termLabel} {[termID]}' slot_uri: MIXS:0001043 range: ControlledTermValue multivalued: false growth_habit: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Characteristic shape, appearance or growth form of a plant species title: growth habit examples: - value: spreading from_schema: http://w3id.org/mixs/terms aliases: - growth habit is_a: core field slot_uri: MIXS:0001044 range: growth_habit_enum multivalued: false growth_hormone_regm: annotations: expected_value: tag: expected_value value: growth hormone name;growth hormone amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens title: growth hormone regimen examples: - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - growth hormone regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000560 range: TextValue multivalued: true hall_count: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The total count of hallways and cooridors in the built structure title: hallway/corridor count examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - hallway/corridor count is_a: core field slot_uri: MIXS:0000228 range: TextValue multivalued: false handidness: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The handidness of the individual sampled title: handidness examples: - value: right handedness from_schema: http://w3id.org/mixs/terms aliases: - handidness is_a: core field slot_uri: MIXS:0000809 range: handidness_enum multivalued: false hc_produced: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If "other" is specified, please propose entry in "additional info" field title: hydrocarbon type produced examples: - value: Gas from_schema: http://w3id.org/mixs/terms aliases: - hydrocarbon type produced is_a: core field slot_uri: MIXS:0000989 range: hc_produced_enum multivalued: false hcr: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose entry in "additional info" field title: hydrocarbon resource type examples: - value: Oil Sand from_schema: http://w3id.org/mixs/terms aliases: - hydrocarbon resource type is_a: core field slot_uri: MIXS:0000988 range: hcr_enum multivalued: false hcr_fw_salinity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS title: formation water salinity examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - formation water salinity is_a: core field slot_uri: MIXS:0000406 range: QuantityValue multivalued: false hcr_geol_age: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field' title: hydrocarbon resource geological age examples: - value: Silurian from_schema: http://w3id.org/mixs/terms aliases: - hydrocarbon resource geological age is_a: core field slot_uri: MIXS:0000993 range: hcr_geol_age_enum multivalued: false hcr_pressure: annotations: expected_value: tag: expected_value value: measurement value range preferred_unit: tag: preferred_unit value: atmosphere, kilopascal occurrence: tag: occurrence value: '1' description: Original pressure of the hydrocarbon resource title: hydrocarbon resource original pressure examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - hydrocarbon resource original pressure is_a: core field string_serialization: '{float} - {float} {unit}' slot_uri: MIXS:0000395 range: TextValue multivalued: false hcr_temp: annotations: expected_value: tag: expected_value value: measurement value range preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: Original temperature of the hydrocarbon resource title: hydrocarbon resource original temperature examples: - value: 150-295 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - hydrocarbon resource original temperature is_a: core field string_serialization: '{float} - {float} {unit}' slot_uri: MIXS:0000393 range: TextValue multivalued: false heat_cool_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: m description: Methods of conditioning or heating a room or building title: heating and cooling system type examples: - value: heat pump from_schema: http://w3id.org/mixs/terms aliases: - heating and cooling system type is_a: core field slot_uri: MIXS:0000766 range: heat_cool_type_enum multivalued: true heat_deliv_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The location of heat delivery within the room title: heating delivery locations examples: - value: north from_schema: http://w3id.org/mixs/terms aliases: - heating delivery locations is_a: core field slot_uri: MIXS:0000810 range: heat_deliv_loc_enum multivalued: false heat_sys_deliv_meth: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The method by which the heat is delivered through the system title: heating system delivery method examples: - value: radiant from_schema: http://w3id.org/mixs/terms aliases: - heating system delivery method is_a: core field string_serialization: '[conductive|radiant]' slot_uri: MIXS:0000812 range: string multivalued: false heat_system_id: annotations: expected_value: tag: expected_value value: unique identifier occurrence: tag: occurrence value: '1' description: The heating system identifier title: heating system identifier examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - heating system identifier is_a: core field slot_uri: MIXS:0000833 range: TextValue multivalued: false heavy_metals: annotations: expected_value: tag: expected_value value: heavy metal name;measurement value unit preferred_unit: tag: preferred_unit value: microgram per gram occurrence: tag: occurrence value: m description: Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field. title: extreme_unusual_properties/heavy metals examples: - value: mercury;0.09 micrograms per gram from_schema: http://w3id.org/mixs/terms aliases: - extreme_unusual_properties/heavy metals is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000652 range: TextValue multivalued: true heavy_metals_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining heavy metals title: extreme_unusual_properties/heavy metals method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - extreme_unusual_properties/heavy metals method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000343 range: TextValue multivalued: false height_carper_fiber: annotations: expected_value: tag: expected_value value: value preferred_unit: tag: preferred_unit value: centimeter occurrence: tag: occurrence value: '1' description: The average carpet fiber height in the indoor environment title: height carpet fiber mat examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - height carpet fiber mat is_a: core field slot_uri: MIXS:0000167 range: QuantityValue multivalued: false herbicide_regm: annotations: expected_value: tag: expected_value value: herbicide name;herbicide amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: herbicide regimen examples: - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - herbicide regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000561 range: TextValue multivalued: true horizon_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining the horizon title: soil horizon method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soil horizon method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000321 range: TextValue multivalued: false host_age: annotations: expected_value: tag: expected_value value: value preferred_unit: tag: preferred_unit value: year, day, hour occurrence: tag: occurrence value: '1' description: Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees title: host age examples: - value: 10 days from_schema: http://w3id.org/mixs/terms aliases: - host age is_a: core field slot_uri: MIXS:0000255 range: QuantityValue multivalued: false host_body_habitat: annotations: expected_value: tag: expected_value value: free text occurrence: tag: occurrence value: '1' description: Original body habitat where the sample was obtained from title: host body habitat examples: - value: nasopharynx from_schema: http://w3id.org/mixs/terms aliases: - host body habitat is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000866 range: TextValue multivalued: false host_body_product: annotations: expected_value: tag: expected_value value: FMA or UBERON occurrence: tag: occurrence value: '1' description: Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon title: host body product examples: - value: Portion of mucus [fma66938] from_schema: http://w3id.org/mixs/terms aliases: - host body product is_a: core field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000888 range: ControlledTermValue multivalued: false host_body_site: annotations: expected_value: tag: expected_value value: FMA or UBERON occurrence: tag: occurrence value: '1' description: Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON title: host body site examples: - value: gill [UBERON:0002535] from_schema: http://w3id.org/mixs/terms aliases: - host body site is_a: core field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000867 range: ControlledTermValue multivalued: false host_body_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: Core body temperature of the host when sample was collected title: host body temperature examples: - value: 15 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - host body temperature is_a: core field slot_uri: MIXS:0000274 range: QuantityValue multivalued: false host_color: annotations: expected_value: tag: expected_value value: color occurrence: tag: occurrence value: '1' description: The color of host title: host color examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - host color is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000260 range: TextValue multivalued: false host_common_name: annotations: expected_value: tag: expected_value value: common name occurrence: tag: occurrence value: '1' description: Common name of the host. title: host common name examples: - value: human from_schema: http://w3id.org/mixs/terms aliases: - host common name is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000248 range: TextValue multivalued: false host_diet: annotations: expected_value: tag: expected_value value: diet type occurrence: tag: occurrence value: m description: Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types title: host diet examples: - value: herbivore from_schema: http://w3id.org/mixs/terms aliases: - host diet is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000869 range: TextValue multivalued: true host_disease_stat: annotations: expected_value: tag: expected_value value: disease name or Disease Ontology term description: List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text title: host disease status examples: - value: rabies [DOID:11260] from_schema: http://w3id.org/mixs/terms aliases: - host disease status is_a: nucleic acid sequence source field string_serialization: '{termLabel} {[termID]}|{text}' slot_uri: MIXS:0000031 range: TextValue multivalued: false host_dry_mass: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: kilogram, gram occurrence: tag: occurrence value: '1' description: Measurement of dry mass title: host dry mass examples: - value: 500 gram from_schema: http://w3id.org/mixs/terms aliases: - host dry mass is_a: core field slot_uri: MIXS:0000257 range: QuantityValue multivalued: false host_family_relation: annotations: expected_value: tag: expected_value value: relationship type;arbitrary identifier occurrence: tag: occurrence value: m description: Familial relationships to other hosts in the same study; can include multiple relationships title: host family relationship examples: - value: offspring;Mussel25 from_schema: http://w3id.org/mixs/terms aliases: - host family relationship is_a: core field string_serialization: '{text};{text}' slot_uri: MIXS:0000872 range: string multivalued: true host_genotype: annotations: expected_value: tag: expected_value value: genotype occurrence: tag: occurrence value: '1' description: Observed genotype title: host genotype examples: - value: C57BL/6 from_schema: http://w3id.org/mixs/terms aliases: - host genotype is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000365 range: TextValue multivalued: false host_growth_cond: annotations: expected_value: tag: expected_value value: PMID,DOI,url or free text occurrence: tag: occurrence value: '1' description: Literature reference giving growth conditions of the host title: host growth conditions examples: - value: https://academic.oup.com/icesjms/article/68/2/349/617247 from_schema: http://w3id.org/mixs/terms aliases: - host growth conditions is_a: core field string_serialization: '{PMID}|{DOI}|{URL}|{text}' slot_uri: MIXS:0000871 range: TextValue multivalued: false host_height: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: centimeter, millimeter, meter occurrence: tag: occurrence value: '1' description: The height of subject title: host height examples: - value: 0.1 meter from_schema: http://w3id.org/mixs/terms aliases: - host height is_a: core field slot_uri: MIXS:0000264 range: QuantityValue multivalued: false host_last_meal: annotations: expected_value: tag: expected_value value: content;duration occurrence: tag: occurrence value: m description: Content of last meal and time since feeding; can include multiple values title: host last meal examples: - value: corn feed;P2H from_schema: http://w3id.org/mixs/terms aliases: - host last meal is_a: core field string_serialization: '{text};{duration}' slot_uri: MIXS:0000870 range: TextValue multivalued: true host_length: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: centimeter, millimeter, meter occurrence: tag: occurrence value: '1' description: The length of subject title: host length examples: - value: 1 meter from_schema: http://w3id.org/mixs/terms aliases: - host length is_a: core field slot_uri: MIXS:0000256 range: QuantityValue multivalued: false host_life_stage: annotations: expected_value: tag: expected_value value: stage occurrence: tag: occurrence value: '1' description: Description of life stage of host title: host life stage examples: - value: adult from_schema: http://w3id.org/mixs/terms aliases: - host life stage is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000251 range: TextValue multivalued: false host_phenotype: annotations: expected_value: tag: expected_value value: PATO or HP occurrence: tag: occurrence value: '1' description: Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP title: host phenotype examples: - value: elongated [PATO:0001154] from_schema: http://w3id.org/mixs/terms aliases: - host phenotype is_a: core field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000874 range: ControlledTermValue multivalued: false host_sex: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Gender or physical sex of the host. title: host sex examples: - value: non-binary from_schema: http://w3id.org/mixs/terms aliases: - host sex is_a: core field slot_uri: MIXS:0000811 range: host_sex_enum multivalued: false host_shape: annotations: expected_value: tag: expected_value value: shape occurrence: tag: occurrence value: '1' description: Morphological shape of host title: host shape examples: - value: round from_schema: http://w3id.org/mixs/terms aliases: - host shape is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000261 range: TextValue multivalued: false host_subject_id: annotations: expected_value: tag: expected_value value: unique identifier occurrence: tag: occurrence value: '1' description: A unique identifier by which each subject can be referred to, de-identified. title: host subject id examples: - value: MPI123 from_schema: http://w3id.org/mixs/terms aliases: - host subject id is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000861 range: TextValue multivalued: false host_subspecf_genlin: annotations: expected_value: tag: expected_value value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar. occurrence: tag: occurrence value: m description: Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123. title: host subspecific genetic lineage examples: - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious' from_schema: http://w3id.org/mixs/terms aliases: - host subspecific genetic lineage is_a: core field string_serialization: '{rank name}:{text}' slot_uri: MIXS:0001318 range: string multivalued: true host_substrate: annotations: expected_value: tag: expected_value value: substrate name occurrence: tag: occurrence value: '1' description: The growth substrate of the host. title: host substrate examples: - value: rock from_schema: http://w3id.org/mixs/terms aliases: - host substrate is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000252 range: TextValue multivalued: false host_symbiont: annotations: expected_value: tag: expected_value value: species name or common name occurrence: tag: occurrence value: m description: The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host. title: observed host symbionts examples: - value: flukeworms from_schema: http://w3id.org/mixs/terms aliases: - observed host symbionts is_a: core field string_serialization: '{text}' slot_uri: MIXS:0001298 range: string multivalued: true host_taxid: annotations: expected_value: tag: expected_value value: NCBI taxon identifier occurrence: tag: occurrence value: '1' description: NCBI taxon id of the host, e.g. 9606 title: host taxid from_schema: http://w3id.org/mixs/terms aliases: - host taxid is_a: core field slot_uri: MIXS:0000250 range: ControlledIdentifiedTermValue multivalued: false comments: - Homo sapiens [NCBITaxon:9606] would be a reasonable has_raw_value host_tot_mass: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: kilogram, gram occurrence: tag: occurrence value: '1' description: Total mass of the host at collection, the unit depends on host title: host total mass examples: - value: 2500 gram from_schema: http://w3id.org/mixs/terms aliases: - host total mass is_a: core field slot_uri: MIXS:0000263 range: QuantityValue multivalued: false host_wet_mass: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: kilogram, gram occurrence: tag: occurrence value: '1' description: Measurement of wet mass title: host wet mass examples: - value: 1500 gram from_schema: http://w3id.org/mixs/terms aliases: - host wet mass is_a: core field slot_uri: MIXS:0000567 range: QuantityValue multivalued: false humidity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: gram per cubic meter occurrence: tag: occurrence value: '1' description: Amount of water vapour in the air, at the time of sampling title: humidity examples: - value: 25 gram per cubic meter from_schema: http://w3id.org/mixs/terms aliases: - humidity is_a: core field slot_uri: MIXS:0000100 range: QuantityValue multivalued: false humidity_regm: annotations: expected_value: tag: expected_value value: humidity value;treatment interval and duration preferred_unit: tag: preferred_unit value: gram per cubic meter occurrence: tag: occurrence value: m description: Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: humidity regimen examples: - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - humidity regimen is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000568 range: TextValue multivalued: true indoor_space: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: A distinguishable space within a structure, the purpose for which discrete areas of a building is used title: indoor space examples: - value: foyer from_schema: http://w3id.org/mixs/terms aliases: - indoor space is_a: core field slot_uri: MIXS:0000763 range: indoor_space_enum multivalued: false indoor_surf: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Type of indoor surface title: indoor surface examples: - value: wall from_schema: http://w3id.org/mixs/terms aliases: - indoor surface is_a: core field slot_uri: MIXS:0000764 range: indoor_surf_enum multivalued: false indust_eff_percent: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: percentage occurrence: tag: occurrence value: '1' description: Percentage of industrial effluents received by wastewater treatment plant title: industrial effluent percent examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - industrial effluent percent is_a: core field slot_uri: MIXS:0000662 range: QuantityValue multivalued: false inorg_particles: annotations: expected_value: tag: expected_value value: inorganic particle name;measurement value preferred_unit: tag: preferred_unit value: mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles title: inorganic particles examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - inorganic particles is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000664 range: TextValue multivalued: true inside_lux: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: kilowatt per square metre occurrence: tag: occurrence value: '1' description: The recorded value at sampling time (power density) title: inside lux light examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - inside lux light is_a: core field slot_uri: MIXS:0000168 range: QuantityValue multivalued: false int_wall_cond: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas title: interior wall condition examples: - value: damaged from_schema: http://w3id.org/mixs/terms aliases: - interior wall condition is_a: core field slot_uri: MIXS:0000813 range: int_wall_cond_enum multivalued: false iw_bt_date_well: annotations: expected_value: tag: expected_value value: timestamp occurrence: tag: occurrence value: '1' description: Injection water breakthrough date per well following a secondary and/or tertiary recovery title: injection water breakthrough date of specific well examples: - value: '2018-05-11' from_schema: http://w3id.org/mixs/terms aliases: - injection water breakthrough date of specific well is_a: core field slot_uri: MIXS:0001010 range: TimestampValue multivalued: false iwf: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: percent occurrence: tag: occurrence value: '1' description: Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%) title: injection water fraction examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - injection water fraction is_a: core field slot_uri: MIXS:0000455 range: QuantityValue multivalued: false last_clean: annotations: expected_value: tag: expected_value value: timestamp occurrence: tag: occurrence value: '1' description: The last time the floor was cleaned (swept, mopped, vacuumed) title: last time swept/mopped/vacuumed examples: - value: 2018-05-11:T14:30Z from_schema: http://w3id.org/mixs/terms aliases: - last time swept/mopped/vacuumed is_a: core field slot_uri: MIXS:0000814 range: TimestampValue multivalued: false lat_lon: annotations: expected_value: tag: expected_value value: decimal degrees, limit to 8 decimal points description: The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system title: geographic location (latitude and longitude) examples: - value: 50.586825 6.408977 from_schema: http://w3id.org/mixs/terms aliases: - geographic location (latitude and longitude) is_a: environment field string_serialization: '{float} {float}' slot_uri: MIXS:0000009 range: GeolocationValue multivalued: false light_intensity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: lux occurrence: tag: occurrence value: '1' description: Measurement of light intensity title: light intensity examples: - value: 0.3 lux from_schema: http://w3id.org/mixs/terms aliases: - light intensity is_a: core field slot_uri: MIXS:0000706 range: QuantityValue multivalued: false light_regm: annotations: expected_value: tag: expected_value value: exposure type;light intensity;light quality preferred_unit: tag: preferred_unit value: lux; micrometer, nanometer, angstrom occurrence: tag: occurrence value: '1' description: Information about treatment(s) involving exposure to light, including both light intensity and quality. title: light regimen examples: - value: incandescant light;10 lux;450 nanometer from_schema: http://w3id.org/mixs/terms aliases: - light regimen is_a: core field string_serialization: '{text};{float} {unit};{float} {unit}' slot_uri: MIXS:0000569 range: TextValue multivalued: false light_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: m description: Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light title: light type examples: - value: desk lamp from_schema: http://w3id.org/mixs/terms aliases: - light type is_a: core field slot_uri: MIXS:0000769 range: light_type_enum multivalued: true link_addit_analys: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Link to additional analysis results performed on the sample title: links to additional analysis examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - links to additional analysis is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000340 range: TextValue multivalued: false link_class_info: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Link to digitized soil maps or other soil classification information title: link to classification information examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - link to classification information is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000329 range: TextValue multivalued: false link_climate_info: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Link to climate resource title: link to climate information examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - link to climate information is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000328 range: TextValue multivalued: false lithology: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If "other" is specified, please propose entry in "additional info" field' title: lithology examples: - value: Volcanic from_schema: http://w3id.org/mixs/terms aliases: - lithology is_a: core field slot_uri: MIXS:0000990 range: lithology_enum multivalued: false local_class: annotations: expected_value: tag: expected_value value: local classification name occurrence: tag: occurrence value: '1' description: Soil classification based on local soil classification system title: soil_taxonomic/local classification examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soil_taxonomic/local classification is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000330 range: TextValue multivalued: false local_class_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining the local soil classification title: soil_taxonomic/local classification method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soil_taxonomic/local classification method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000331 range: TextValue multivalued: false magnesium: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: mole per liter, milligram per liter, parts per million, micromole per kilogram occurrence: tag: occurrence value: '1' description: Concentration of magnesium in the sample title: magnesium examples: - value: 52.8 micromole per kilogram from_schema: http://w3id.org/mixs/terms aliases: - magnesium is_a: core field slot_uri: MIXS:0000431 range: QuantityValue multivalued: false max_occup: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: The maximum amount of people allowed in the indoor environment title: maximum occupancy examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - maximum occupancy is_a: core field slot_uri: MIXS:0000229 range: QuantityValue multivalued: false mean_frict_vel: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter per second occurrence: tag: occurrence value: '1' description: Measurement of mean friction velocity title: mean friction velocity examples: - value: 0.5 meter per second from_schema: http://w3id.org/mixs/terms aliases: - mean friction velocity is_a: core field slot_uri: MIXS:0000498 range: QuantityValue multivalued: false mean_peak_frict_vel: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter per second occurrence: tag: occurrence value: '1' description: Measurement of mean peak friction velocity title: mean peak friction velocity examples: - value: 1 meter per second from_schema: http://w3id.org/mixs/terms aliases: - mean peak friction velocity is_a: core field slot_uri: MIXS:0000502 range: QuantityValue multivalued: false mech_struc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: 'mechanical structure: a moving structure' title: mechanical structure examples: - value: elevator from_schema: http://w3id.org/mixs/terms aliases: - mechanical structure is_a: core field slot_uri: MIXS:0000815 range: mech_struc_enum multivalued: false mechanical_damage: annotations: expected_value: tag: expected_value value: damage type;body site occurrence: tag: occurrence value: m description: Information about any mechanical damage exerted on the plant; can include multiple damages and sites title: mechanical damage examples: - value: pruning;bark from_schema: http://w3id.org/mixs/terms aliases: - mechanical damage is_a: core field string_serialization: '{text};{text}' slot_uri: MIXS:0001052 range: TextValue multivalued: true methane: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, parts per billion, parts per million occurrence: tag: occurrence value: '1' description: Methane (gas) amount or concentration at the time of sampling title: methane examples: - value: 1800 parts per billion from_schema: http://w3id.org/mixs/terms aliases: - methane is_a: core field slot_uri: MIXS:0000101 range: QuantityValue multivalued: false micro_biomass_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining microbial biomass title: microbial biomass method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - microbial biomass method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000339 range: string multivalued: false microbial_biomass: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: ton, kilogram, gram per kilogram soil occurrence: tag: occurrence value: '1' description: The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units title: microbial biomass examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - microbial biomass is_a: core field slot_uri: MIXS:0000650 range: QuantityValue multivalued: false mineral_nutr_regm: annotations: expected_value: tag: expected_value value: mineral nutrient name;mineral nutrient amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens title: mineral nutrient regimen examples: - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - mineral nutrient regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000570 range: TextValue multivalued: true misc_param: annotations: expected_value: tag: expected_value value: parameter name;measurement value occurrence: tag: occurrence value: m description: Any other measurement performed or parameter collected, that is not listed here title: miscellaneous parameter examples: - value: Bicarbonate ion concentration;2075 micromole per kilogram from_schema: http://w3id.org/mixs/terms aliases: - miscellaneous parameter is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000752 range: TextValue multivalued: true n_alkanes: annotations: expected_value: tag: expected_value value: n-alkane name;measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: m description: Concentration of n-alkanes; can include multiple n-alkanes title: n-alkanes examples: - value: n-hexadecane;100 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - n-alkanes is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000503 range: TextValue multivalued: true nitrate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of nitrate in the sample title: nitrate examples: - value: 65 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - nitrate is_a: core field slot_uri: MIXS:0000425 range: QuantityValue multivalued: false nitrite: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of nitrite in the sample title: nitrite examples: - value: 0.5 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - nitrite is_a: core field slot_uri: MIXS:0000426 range: QuantityValue multivalued: false nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of nitrogen (total) title: nitrogen examples: - value: 4.2 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - nitrogen is_a: core field slot_uri: MIXS:0000504 range: QuantityValue multivalued: false non_min_nutr_regm: annotations: expected_value: tag: expected_value value: non-mineral nutrient name;non-mineral nutrient amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens title: non-mineral nutrient regimen examples: - value: carbon dioxide;10 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - non-mineral nutrient regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000571 range: string multivalued: true nucl_acid_amp: annotations: expected_value: tag: expected_value value: PMID, DOI or URL description: A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids title: nucleic acid amplification examples: - value: https://phylogenomics.me/protocols/16s-pcr-protocol/ from_schema: http://w3id.org/mixs/terms aliases: - nucleic acid amplification is_a: sequencing field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000038 range: TextValue multivalued: false nucl_acid_ext: annotations: expected_value: tag: expected_value value: PMID, DOI or URL description: A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample title: nucleic acid extraction examples: - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf from_schema: http://w3id.org/mixs/terms aliases: - nucleic acid extraction is_a: sequencing field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000037 range: TextValue multivalued: false number_pets: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: The number of pets residing in the sampled space title: number of pets examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - number of pets is_a: core field slot_uri: MIXS:0000231 range: QuantityValue multivalued: false number_plants: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: The number of plant(s) in the sampling space title: number of houseplants examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - number of houseplants is_a: core field slot_uri: MIXS:0000230 range: QuantityValue multivalued: false number_resident: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: The number of individuals currently occupying in the sampling location title: number of residents examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - number of residents is_a: core field slot_uri: MIXS:0000232 range: QuantityValue multivalued: false occup_density_samp: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: Average number of occupants at time of sampling per square footage title: occupant density at sampling examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - occupant density at sampling is_a: core field slot_uri: MIXS:0000217 range: QuantityValue multivalued: false occup_document: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of documentation of occupancy title: occupancy documentation examples: - value: estimate from_schema: http://w3id.org/mixs/terms aliases: - occupancy documentation is_a: core field slot_uri: MIXS:0000816 range: occup_document_enum multivalued: false occup_samp: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: Number of occupants present at time of sample within the given space title: occupancy at sampling examples: - value: '10' from_schema: http://w3id.org/mixs/terms aliases: - occupancy at sampling is_a: core field slot_uri: MIXS:0000772 range: QuantityValue multivalued: false org_carb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of organic carbon title: organic carbon examples: - value: 1.5 microgram per liter from_schema: http://w3id.org/mixs/terms aliases: - organic carbon is_a: core field slot_uri: MIXS:0000508 range: QuantityValue multivalued: false org_count_qpcr_info: annotations: expected_value: tag: expected_value value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles preferred_unit: tag: preferred_unit value: number of cells per gram (or ml or cm^2) occurrence: tag: occurrence value: '1' description: 'If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)' title: organism count qPCR information examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - organism count qPCR information is_a: core field string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles' slot_uri: MIXS:0000099 range: string multivalued: false org_matter: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter occurrence: tag: occurrence value: '1' description: Concentration of organic matter title: organic matter examples: - value: 1.75 milligram per cubic meter from_schema: http://w3id.org/mixs/terms aliases: - organic matter is_a: core field slot_uri: MIXS:0000204 range: QuantityValue multivalued: false org_nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter occurrence: tag: occurrence value: '1' description: Concentration of organic nitrogen title: organic nitrogen examples: - value: 4 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - organic nitrogen is_a: core field slot_uri: MIXS:0000205 range: QuantityValue multivalued: false org_particles: annotations: expected_value: tag: expected_value value: particle name;measurement value preferred_unit: tag: preferred_unit value: gram per liter occurrence: tag: occurrence value: m description: Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc. title: organic particles examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - organic particles is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000665 range: TextValue multivalued: true organism_count: annotations: expected_value: tag: expected_value value: organism name;measurement value;enumeration preferred_unit: tag: preferred_unit value: number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter occurrence: tag: occurrence value: m description: 'Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)' title: organism count examples: - value: total prokaryotes;3.5e7 cells per milliliter;qPCR from_schema: http://w3id.org/mixs/terms aliases: - organism count is_a: core field slot_uri: MIXS:0000103 range: QuantityValue multivalued: true owc_tvdss: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS) title: oil water contact depth examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - oil water contact depth is_a: core field slot_uri: MIXS:0000405 range: QuantityValue multivalued: false oxy_stat_samp: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Oxygenation status of sample title: oxygenation status of sample examples: - value: aerobic from_schema: http://w3id.org/mixs/terms aliases: - oxygenation status of sample is_a: core field slot_uri: MIXS:0000753 range: oxy_stat_samp_enum multivalued: false oxygen: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Oxygen (gas) amount or concentration at the time of sampling title: oxygen examples: - value: 600 parts per million from_schema: http://w3id.org/mixs/terms aliases: - oxygen is_a: core field slot_uri: MIXS:0000104 range: QuantityValue multivalued: false part_org_carb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter occurrence: tag: occurrence value: '1' description: Concentration of particulate organic carbon title: particulate organic carbon examples: - value: 1.92 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - particulate organic carbon is_a: core field slot_uri: MIXS:0000515 range: QuantityValue multivalued: false part_org_nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of particulate organic nitrogen title: particulate organic nitrogen examples: - value: 0.3 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - particulate organic nitrogen is_a: core field slot_uri: MIXS:0000719 range: QuantityValue multivalued: false particle_class: annotations: expected_value: tag: expected_value value: particle name;measurement value preferred_unit: tag: preferred_unit value: micrometer occurrence: tag: occurrence value: m description: Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values title: particle classification examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - particle classification is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000206 range: TextValue multivalued: true pcr_cond: annotations: expected_value: tag: expected_value value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles description: Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...' title: pcr conditions examples: - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 from_schema: http://w3id.org/mixs/terms aliases: - pcr conditions is_a: sequencing field string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles slot_uri: MIXS:0000049 range: TextValue multivalued: false pcr_primers: annotations: expected_value: tag: expected_value value: 'FWD: forward primer sequence;REV:reverse primer sequence' description: PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters title: pcr primers examples: - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT from_schema: http://w3id.org/mixs/terms aliases: - pcr primers is_a: sequencing field string_serialization: FWD:{dna};REV:{dna} slot_uri: MIXS:0000046 range: TextValue multivalued: false permeability: annotations: expected_value: tag: expected_value value: measurement value range preferred_unit: tag: preferred_unit value: mD occurrence: tag: occurrence value: '1' description: 'Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))' title: permeability examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - permeability is_a: core field string_serialization: '{integer} - {integer} {unit}' slot_uri: MIXS:0000404 range: TextValue multivalued: false perturbation: annotations: expected_value: tag: expected_value value: perturbation type name;perturbation interval and duration occurrence: tag: occurrence value: m description: Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types title: perturbation examples: - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - perturbation is_a: core field string_serialization: '{text};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000754 range: TextValue multivalued: true pesticide_regm: annotations: expected_value: tag: expected_value value: pesticide name;pesticide amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter occurrence: tag: occurrence value: m description: Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens title: pesticide regimen examples: - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - pesticide regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000573 range: TextValue multivalued: true petroleum_hydrocarb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of petroleum hydrocarbon title: petroleum hydrocarbon examples: - value: 0.05 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - petroleum hydrocarbon is_a: core field slot_uri: MIXS:0000516 range: QuantityValue multivalued: false ph: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid title: pH examples: - value: '7.2' from_schema: http://w3id.org/mixs/terms aliases: - pH is_a: core field slot_uri: MIXS:0001001 range: double multivalued: false ph_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining ph title: pH method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - pH method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0001106 range: TextValue multivalued: false ph_regm: annotations: expected_value: tag: expected_value value: measurement value;treatment interval and duration occurrence: tag: occurrence value: m description: Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen title: pH regimen examples: - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - pH regimen is_a: core field string_serialization: '{float};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0001056 range: TextValue multivalued: true phaeopigments: annotations: expected_value: tag: expected_value value: phaeopigment name;measurement value preferred_unit: tag: preferred_unit value: milligram per cubic meter occurrence: tag: occurrence value: m description: Concentration of phaeopigments; can include multiple phaeopigments title: phaeopigments examples: - value: 2.5 milligram per cubic meter from_schema: http://w3id.org/mixs/terms aliases: - phaeopigments is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000180 range: TextValue multivalued: true phosphate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of phosphate title: phosphate examples: - value: 0.7 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - phosphate is_a: core field slot_uri: MIXS:0000505 range: QuantityValue multivalued: false phosplipid_fatt_acid: annotations: expected_value: tag: expected_value value: phospholipid fatty acid name;measurement value preferred_unit: tag: preferred_unit value: mole per gram, mole per liter occurrence: tag: occurrence value: m description: Concentration of phospholipid fatty acids; can include multiple values title: phospholipid fatty acid examples: - value: 2.98 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - phospholipid fatty acid is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000181 range: TextValue multivalued: true photon_flux: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: number of photons per second per unit area occurrence: tag: occurrence value: '1' description: Measurement of photon flux title: photon flux examples: - value: 3.926 micromole photons per second per square meter from_schema: http://w3id.org/mixs/terms aliases: - photon flux is_a: core field slot_uri: MIXS:0000725 range: QuantityValue multivalued: false plant_growth_med: annotations: expected_value: tag: expected_value value: EO or enumeration occurrence: tag: occurrence value: '1' description: Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary title: plant growth medium examples: - value: hydroponic plant culture media [EO:0007067] from_schema: http://w3id.org/mixs/terms aliases: - plant growth medium is_a: core field slot_uri: MIXS:0001057 range: ControlledTermValue multivalued: false plant_product: annotations: expected_value: tag: expected_value value: product name occurrence: tag: occurrence value: '1' description: Substance produced by the plant, where the sample was obtained from title: plant product examples: - value: xylem sap [PO:0025539] from_schema: http://w3id.org/mixs/terms aliases: - plant product is_a: core field string_serialization: '{text}' slot_uri: MIXS:0001058 range: TextValue multivalued: false plant_sex: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite. title: plant sex examples: - value: Hermaphroditic from_schema: http://w3id.org/mixs/terms aliases: - plant sex is_a: core field slot_uri: MIXS:0001059 range: plant_sex_enum multivalued: false plant_struc: annotations: expected_value: tag: expected_value value: PO occurrence: tag: occurrence value: '1' description: Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here. title: plant structure examples: - value: epidermis [PO:0005679] from_schema: http://w3id.org/mixs/terms aliases: - plant structure is_a: core field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0001060 range: ControlledTermValue multivalued: false pollutants: annotations: expected_value: tag: expected_value value: pollutant name;measurement value preferred_unit: tag: preferred_unit value: gram, mole per liter, milligram per liter, microgram per cubic meter occurrence: tag: occurrence value: m description: Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant title: pollutants examples: - value: lead;0.15 microgram per cubic meter from_schema: http://w3id.org/mixs/terms aliases: - pollutants is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000107 range: TextValue multivalued: true pool_dna_extracts: annotations: expected_value: tag: expected_value value: pooling status;number of pooled extracts occurrence: tag: occurrence value: '1' description: Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given title: pooling of DNA extracts (if done) examples: - value: yes;5 from_schema: http://w3id.org/mixs/terms aliases: - pooling of DNA extracts (if done) is_a: core field string_serialization: '{boolean};{integer}' slot_uri: MIXS:0000325 range: TextValue multivalued: false porosity: annotations: expected_value: tag: expected_value value: measurement value or range preferred_unit: tag: preferred_unit value: percentage occurrence: tag: occurrence value: '1' description: Porosity of deposited sediment is volume of voids divided by the total volume of sample title: porosity examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - porosity is_a: core field string_serialization: '{float} - {float} {unit}' slot_uri: MIXS:0000211 range: TextValue multivalued: false potassium: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of potassium in the sample title: potassium examples: - value: 463 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - potassium is_a: core field slot_uri: MIXS:0000430 range: QuantityValue multivalued: false pour_point: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: 'Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high¬†pour point¬†is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)' title: pour point examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - pour point is_a: core field slot_uri: MIXS:0000127 range: QuantityValue multivalued: false pre_treatment: annotations: expected_value: tag: expected_value value: pre-treatment type occurrence: tag: occurrence value: '1' description: The process of pre-treatment removes materials that can be easily collected from the raw wastewater title: pre-treatment examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - pre-treatment is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000348 range: TextValue multivalued: false pres_animal_insect: annotations: expected_value: tag: expected_value value: enumeration;count occurrence: tag: occurrence value: '1' description: The type and number of animals or insects present in the sampling space. title: presence of pets, animals, or insects examples: - value: cat;5 from_schema: http://w3id.org/mixs/terms aliases: - presence of pets, animals, or insects is_a: core field slot_uri: MIXS:0000819 range: string multivalued: false pattern: ^(cat|dog|rodent|snake|other);\d+$ pressure: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: atmosphere occurrence: tag: occurrence value: '1' description: Pressure to which the sample is subject to, in atmospheres title: pressure examples: - value: 50 atmosphere from_schema: http://w3id.org/mixs/terms aliases: - pressure is_a: core field slot_uri: MIXS:0000412 range: QuantityValue multivalued: false prev_land_use_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining previous land use and dates title: history/previous land use method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - history/previous land use method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000316 range: string multivalued: false previous_land_use: annotations: expected_value: tag: expected_value value: land use name;date occurrence: tag: occurrence value: '1' description: Previous land use and dates title: history/previous land use examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - history/previous land use is_a: core field string_serialization: '{text};{timestamp}' slot_uri: MIXS:0000315 range: TextValue multivalued: false primary_prod: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per cubic meter per day, gram per square meter per day occurrence: tag: occurrence value: '1' description: Measurement of primary production, generally measured as isotope uptake title: primary production examples: - value: 100 milligram per cubic meter per day from_schema: http://w3id.org/mixs/terms aliases: - primary production is_a: core field slot_uri: MIXS:0000728 range: QuantityValue multivalued: false primary_treatment: annotations: expected_value: tag: expected_value value: primary treatment type occurrence: tag: occurrence value: '1' description: The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed title: primary treatment examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - primary treatment is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000349 range: TextValue multivalued: false prod_rate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: cubic meter per day occurrence: tag: occurrence value: '1' description: Oil and/or gas production rates per well (e.g. 524 m3 / day) title: production rate examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - production rate is_a: core field slot_uri: MIXS:0000452 range: QuantityValue multivalued: false prod_start_date: annotations: expected_value: tag: expected_value value: timestamp occurrence: tag: occurrence value: '1' description: Date of field's first production title: production start date examples: - value: '2018-05-11' from_schema: http://w3id.org/mixs/terms aliases: - production start date is_a: core field slot_uri: MIXS:0001008 range: TimestampValue multivalued: false profile_position: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas title: profile position examples: - value: summit from_schema: http://w3id.org/mixs/terms aliases: - profile position is_a: core field slot_uri: MIXS:0001084 range: profile_position_enum multivalued: false quad_pos: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The quadrant position of the sampling room within the building title: quadrant position examples: - value: West side from_schema: http://w3id.org/mixs/terms aliases: - quadrant position is_a: core field slot_uri: MIXS:0000820 range: quad_pos_enum multivalued: false radiation_regm: annotations: expected_value: tag: expected_value value: radiation type name;radiation amount;treatment interval and duration preferred_unit: tag: preferred_unit value: rad, gray occurrence: tag: occurrence value: m description: Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens title: radiation regimen examples: - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - radiation regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000575 range: TextValue multivalued: true rainfall_regm: annotations: expected_value: tag: expected_value value: measurement value;treatment interval and duration preferred_unit: tag: preferred_unit value: millimeter occurrence: tag: occurrence value: m description: Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: rainfall regimen examples: - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - rainfall regimen is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000576 range: TextValue multivalued: true reactor_type: annotations: expected_value: tag: expected_value value: reactor type name occurrence: tag: occurrence value: '1' description: Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage title: reactor type examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - reactor type is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000350 range: TextValue multivalued: false redox_potential: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millivolt occurrence: tag: occurrence value: '1' description: Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential title: redox potential examples: - value: 300 millivolt from_schema: http://w3id.org/mixs/terms aliases: - redox potential is_a: core field slot_uri: MIXS:0000182 range: QuantityValue multivalued: false rel_air_humidity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: percentage occurrence: tag: occurrence value: '1' description: Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air title: relative air humidity examples: - value: 80% from_schema: http://w3id.org/mixs/terms aliases: - relative air humidity is_a: core field slot_uri: MIXS:0000121 range: QuantityValue multivalued: false rel_humidity_out: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: gram of air, kilogram of air occurrence: tag: occurrence value: '1' description: The recorded outside relative humidity value at the time of sampling title: outside relative humidity examples: - value: 12 per kilogram of air from_schema: http://w3id.org/mixs/terms aliases: - outside relative humidity is_a: core field slot_uri: MIXS:0000188 range: QuantityValue multivalued: false rel_samp_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The sampling location within the train car title: relative sampling location examples: - value: center of car from_schema: http://w3id.org/mixs/terms aliases: - relative sampling location is_a: core field slot_uri: MIXS:0000821 range: rel_samp_loc_enum multivalued: false reservoir: annotations: expected_value: tag: expected_value value: name occurrence: tag: occurrence value: '1' description: Name of the reservoir (e.g. Carapebus) title: reservoir name examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - reservoir name is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000303 range: TextValue multivalued: false resins_pc: annotations: expected_value: tag: expected_value value: name;measurement value preferred_unit: tag: preferred_unit value: percent occurrence: tag: occurrence value: '1' description: 'Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: resins wt% examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - resins wt% is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000134 range: TextValue multivalued: false room_air_exch_rate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: liter per hour occurrence: tag: occurrence value: '1' description: The rate at which outside air replaces indoor air in a given space title: room air exchange rate examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room air exchange rate is_a: core field slot_uri: MIXS:0000169 range: QuantityValue multivalued: false room_architec_elem: annotations: expected_value: tag: expected_value value: free text occurrence: tag: occurrence value: '1' description: The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure title: room architectural elements examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room architectural elements is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000233 range: string multivalued: false room_condt: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The condition of the room at the time of sampling title: room condition examples: - value: new from_schema: http://w3id.org/mixs/terms aliases: - room condition is_a: core field slot_uri: MIXS:0000822 range: room_condt_enum multivalued: false room_connected: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: List of rooms connected to the sampling room by a doorway title: rooms connected by a doorway examples: - value: office from_schema: http://w3id.org/mixs/terms aliases: - rooms connected by a doorway is_a: core field slot_uri: MIXS:0000826 range: room_connected_enum multivalued: false room_count: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The total count of rooms in the built structure including all room types title: room count examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room count is_a: core field slot_uri: MIXS:0000234 range: TextValue multivalued: false room_dim: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: The length, width and height of sampling room title: room dimensions examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room dimensions is_a: core field string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}' slot_uri: MIXS:0000192 range: TextValue multivalued: false room_door_dist: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: Distance between doors (meters) in the hallway between the sampling room and adjacent rooms title: room door distance examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room door distance is_a: core field string_serialization: '{integer} {unit}' slot_uri: MIXS:0000193 range: TextValue multivalued: false room_door_share: annotations: expected_value: tag: expected_value value: room name;room number occurrence: tag: occurrence value: '1' description: List of room(s) (room number, room name) sharing a door with the sampling room title: rooms that share a door with sampling room examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - rooms that share a door with sampling room is_a: core field string_serialization: '{text};{integer}' slot_uri: MIXS:0000242 range: TextValue multivalued: false room_hallway: annotations: expected_value: tag: expected_value value: room name;room number occurrence: tag: occurrence value: '1' description: List of room(s) (room number, room name) located in the same hallway as sampling room title: rooms that are on the same hallway examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - rooms that are on the same hallway is_a: core field string_serialization: '{text};{integer}' slot_uri: MIXS:0000238 range: TextValue multivalued: false room_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The position of the room within the building title: room location in building examples: - value: interior room from_schema: http://w3id.org/mixs/terms aliases: - room location in building is_a: core field slot_uri: MIXS:0000823 range: room_loc_enum multivalued: false room_moist_dam_hist: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed title: room moisture damage or mold history examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room moisture damage or mold history is_a: core field slot_uri: MIXS:0000235 range: integer multivalued: false room_net_area: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: square feet, square meter occurrence: tag: occurrence value: '1' description: The net floor area of sampling room. Net area excludes wall thicknesses title: room net area examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room net area is_a: core field string_serialization: '{integer} {unit}' slot_uri: MIXS:0000194 range: TextValue multivalued: false room_occup: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: Count of room occupancy at time of sampling title: room occupancy examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room occupancy is_a: core field slot_uri: MIXS:0000236 range: QuantityValue multivalued: false room_samp_pos: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The horizontal sampling position in the room relative to architectural elements title: room sampling position examples: - value: south corner from_schema: http://w3id.org/mixs/terms aliases: - room sampling position is_a: core field slot_uri: MIXS:0000824 range: room_samp_pos_enum multivalued: false room_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The main purpose or activity of the sampling room. A room is any distinguishable space within a structure title: room type examples: - value: bathroom from_schema: http://w3id.org/mixs/terms aliases: - room type is_a: core field slot_uri: MIXS:0000825 range: room_type_enum multivalued: false room_vol: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: cubic feet, cubic meter occurrence: tag: occurrence value: '1' description: Volume of sampling room title: room volume examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room volume is_a: core field string_serialization: '{integer} {unit}' slot_uri: MIXS:0000195 range: TextValue multivalued: false room_wall_share: annotations: expected_value: tag: expected_value value: room name;room number occurrence: tag: occurrence value: '1' description: List of room(s) (room number, room name) sharing a wall with the sampling room title: rooms that share a wall with sampling room examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - rooms that share a wall with sampling room is_a: core field string_serialization: '{text};{integer}' slot_uri: MIXS:0000243 range: TextValue multivalued: false room_window_count: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: Number of windows in the room title: room window count examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - room window count is_a: core field slot_uri: MIXS:0000237 range: integer multivalued: false root_cond: annotations: expected_value: tag: expected_value value: PMID,DOI,url or free text occurrence: tag: occurrence value: '1' description: Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container. title: rooting conditions examples: - value: http://himedialabs.com/TD/PT158.pdf from_schema: http://w3id.org/mixs/terms aliases: - rooting conditions is_a: core field string_serialization: '{PMID}|{DOI}|{URL}|{text}' slot_uri: MIXS:0001061 range: TextValue multivalued: false root_med_carbon: annotations: expected_value: tag: expected_value value: carbon source name;measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Source of organic carbon in the culture rooting medium; e.g. sucrose. title: rooting medium carbon examples: - value: sucrose from_schema: http://w3id.org/mixs/terms aliases: - rooting medium carbon is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000577 range: TextValue multivalued: false root_med_macronutr: annotations: expected_value: tag: expected_value value: macronutrient name;measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170¬†mg/L). title: rooting medium macronutrients examples: - value: KH2PO4;170¬†milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - rooting medium macronutrients is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000578 range: TextValue multivalued: false root_med_micronutr: annotations: expected_value: tag: expected_value value: micronutrient name;measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2¬†mg/L). title: rooting medium micronutrients examples: - value: H3BO3;6.2¬†milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - rooting medium micronutrients is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000579 range: TextValue multivalued: false root_med_ph: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: pH measurement of the culture rooting medium; e.g. 5.5. title: rooting medium pH examples: - value: '7.5' from_schema: http://w3id.org/mixs/terms aliases: - rooting medium pH is_a: core field slot_uri: MIXS:0001062 range: QuantityValue multivalued: false root_med_regl: annotations: expected_value: tag: expected_value value: regulator name;measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5¬†mg/L NAA. title: rooting medium regulators examples: - value: abscisic acid;0.75 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - rooting medium regulators is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000581 range: TextValue multivalued: false root_med_solid: annotations: expected_value: tag: expected_value value: name occurrence: tag: occurrence value: '1' description: Specification of the solidifying agent in the culture rooting medium; e.g. agar. title: rooting medium solidifier examples: - value: agar from_schema: http://w3id.org/mixs/terms aliases: - rooting medium solidifier is_a: core field string_serialization: '{text}' slot_uri: MIXS:0001063 range: TextValue multivalued: false root_med_suppl: annotations: expected_value: tag: expected_value value: supplement name;measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5¬†mg/L). title: rooting medium organic supplements examples: - value: nicotinic acid;0.5 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - rooting medium organic supplements is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000580 range: TextValue multivalued: false salinity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: practical salinity unit, percentage occurrence: tag: occurrence value: '1' description: The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater. title: salinity examples: - value: 25 practical salinity unit from_schema: http://w3id.org/mixs/terms aliases: - salinity is_a: core field slot_uri: MIXS:0000183 range: QuantityValue multivalued: false salinity_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining salinity title: salinity method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - salinity method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000341 range: TextValue multivalued: false salt_regm: annotations: expected_value: tag: expected_value value: salt name;salt amount;treatment interval and duration preferred_unit: tag: preferred_unit value: gram, microgram, mole per liter, gram per liter occurrence: tag: occurrence value: m description: Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens title: salt regimen examples: - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - salt regimen is_a: core field string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000582 range: TextValue multivalued: true samp_capt_status: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Reason for the sample title: sample capture status examples: - value: farm sample from_schema: http://w3id.org/mixs/terms aliases: - sample capture status is_a: core field slot_uri: MIXS:0000860 range: samp_capt_status_enum multivalued: false samp_collec_device: annotations: expected_value: tag: expected_value value: device name description: The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094). title: sample collection device examples: - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] from_schema: http://w3id.org/mixs/terms aliases: - sample collection device is_a: nucleic acid sequence source field string_serialization: '{termLabel} {[termID]}|{text}' slot_uri: MIXS:0000002 range: string multivalued: false samp_collec_method: annotations: expected_value: tag: expected_value value: PMID,DOI,url , or text description: The method employed for collecting the sample. title: sample collection method examples: - value: swabbing from_schema: http://w3id.org/mixs/terms aliases: - sample collection method is_a: nucleic acid sequence source field string_serialization: '{PMID}|{DOI}|{URL}|{text}' slot_uri: MIXS:0001225 range: string multivalued: false samp_collect_point: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If "other" is specified, please propose entry in "additional info" field title: sample collection point examples: - value: well from_schema: http://w3id.org/mixs/terms aliases: - sample collection point is_a: core field slot_uri: MIXS:0001015 range: samp_collect_point_enum multivalued: false samp_dis_stage: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen. title: sample disease stage examples: - value: infection from_schema: http://w3id.org/mixs/terms aliases: - sample disease stage is_a: core field slot_uri: MIXS:0000249 range: samp_dis_stage_enum multivalued: false samp_floor: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The floor of the building, where the sampling room is located title: sampling floor examples: - value: 4th floor from_schema: http://w3id.org/mixs/terms aliases: - sampling floor is_a: core field slot_uri: MIXS:0000828 range: samp_floor_enum multivalued: false samp_loc_corr_rate: annotations: expected_value: tag: expected_value value: measurement value range preferred_unit: tag: preferred_unit value: millimeter per year occurrence: tag: occurrence value: '1' description: Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays title: corrosion rate at sample location examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - corrosion rate at sample location is_a: core field string_serialization: '{float} - {float} {unit}' slot_uri: MIXS:0000136 range: TextValue multivalued: false samp_mat_process: annotations: expected_value: tag: expected_value value: text description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - value: filtering of seawater, storing samples in ethanol from_schema: http://w3id.org/mixs/terms aliases: - sample material processing is_a: nucleic acid sequence source field string_serialization: '{text}' slot_uri: MIXS:0000016 range: ControlledTermValue multivalued: false samp_md: annotations: expected_value: tag: expected_value value: measurement value;enumeration preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If "other" is specified, please propose entry in "additional info" field title: sample measured depth examples: - value: 1534 meter;MSL from_schema: http://w3id.org/mixs/terms aliases: - sample measured depth is_a: core field slot_uri: MIXS:0000413 range: QuantityValue multivalued: false samp_name: annotations: expected_value: tag: expected_value value: text description: A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name. title: sample name examples: - value: ISDsoil1 from_schema: http://w3id.org/mixs/terms aliases: - sample name is_a: investigation field string_serialization: '{text}' slot_uri: MIXS:0001107 range: string multivalued: false samp_preserv: annotations: expected_value: tag: expected_value value: name;measurement value preferred_unit: tag: preferred_unit value: milliliter occurrence: tag: occurrence value: '1' description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml) title: preservative added to sample examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - preservative added to sample is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000463 range: TextValue multivalued: false samp_room_id: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: Sampling room number. This ID should be consistent with the designations on the building floor plans title: sampling room ID or name examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sampling room ID or name is_a: core field slot_uri: MIXS:0000244 range: TextValue multivalued: false samp_size: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millliter, gram, milligram, liter description: The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected. title: amount or size of sample collected examples: - value: 5 liter from_schema: http://w3id.org/mixs/terms aliases: - amount or size of sample collected is_a: nucleic acid sequence source field slot_uri: MIXS:0000001 range: QuantityValue multivalued: false samp_sort_meth: annotations: expected_value: tag: expected_value value: description of method occurrence: tag: occurrence value: m description: Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor. title: sample size sorting method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sample size sorting method is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000216 range: TextValue multivalued: true samp_store_dur: annotations: expected_value: tag: expected_value value: duration occurrence: tag: occurrence value: '1' description: Duration for which the sample was stored title: sample storage duration examples: - value: P1Y6M from_schema: http://w3id.org/mixs/terms aliases: - sample storage duration is_a: core field string_serialization: '{duration}' slot_uri: MIXS:0000116 range: TextValue multivalued: false samp_store_loc: annotations: expected_value: tag: expected_value value: location name occurrence: tag: occurrence value: '1' description: Location at which sample was stored, usually name of a specific freezer/room title: sample storage location examples: - value: Freezer no:5 from_schema: http://w3id.org/mixs/terms aliases: - sample storage location is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000755 range: TextValue multivalued: false samp_store_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: Temperature at which sample was stored, e.g. -80 degree Celsius title: sample storage temperature examples: - value: -80 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - sample storage temperature is_a: core field slot_uri: MIXS:0000110 range: QuantityValue multivalued: false samp_subtype: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Name of sample sub-type. For example if "sample type" is "Produced Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified, please propose entry in "additional info" field title: sample subtype examples: - value: biofilm from_schema: http://w3id.org/mixs/terms aliases: - sample subtype is_a: core field slot_uri: MIXS:0000999 range: samp_subtype_enum multivalued: false samp_taxon_id: annotations: expected_value: tag: expected_value value: Taxonomy ID description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome’ for mock community/positive controls, or 'blank sample' for negative controls. title: Taxonomy ID of DNA sample from_schema: http://w3id.org/mixs/terms aliases: - Taxonomy ID of DNA sample is_a: investigation field slot_uri: MIXS:0001320 range: ControlledIdentifiedTermValue multivalued: false comments: - coal metagenome [NCBITaxon:1260732] would be a reasonable has_raw_value samp_time_out: annotations: expected_value: tag: expected_value value: time preferred_unit: tag: preferred_unit value: hour occurrence: tag: occurrence value: '1' description: The recent and long term history of outside sampling title: sampling time outside examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sampling time outside is_a: core field slot_uri: MIXS:0000196 range: TextValue multivalued: false samp_transport_cond: annotations: expected_value: tag: expected_value value: measurement value;measurement value preferred_unit: tag: preferred_unit value: days;degree Celsius occurrence: tag: occurrence value: '1' description: Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 ¬∞C) title: sample transport conditions examples: - value: 5 days;-20 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - sample transport conditions is_a: core field string_serialization: '{float} {unit};{float} {unit}' slot_uri: MIXS:0000410 range: TextValue multivalued: false samp_tvdss: annotations: expected_value: tag: expected_value value: measurement value or measurement value range preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m title: sample true vertical depth subsea examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sample true vertical depth subsea is_a: core field string_serialization: '{float}-{float} {unit}' slot_uri: MIXS:0000409 range: TextValue multivalued: false samp_type: annotations: expected_value: tag: expected_value value: GENEPIO:0001246 occurrence: tag: occurrence value: '1' description: The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246). title: sample type examples: - value: built environment sample [GENEPIO:0001248] from_schema: http://w3id.org/mixs/terms aliases: - sample type is_a: core field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000998 range: TextValue multivalued: false samp_vol_we_dna_ext: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millliter, gram, milligram, square centimeter description: 'Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001).' title: sample volume or weight for DNA extraction examples: - value: 1500 milliliter from_schema: http://w3id.org/mixs/terms aliases: - sample volume or weight for DNA extraction is_a: nucleic acid sequence source field slot_uri: MIXS:0000111 range: QuantityValue multivalued: false samp_weather: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The weather on the sampling day title: sampling day weather examples: - value: foggy from_schema: http://w3id.org/mixs/terms aliases: - sampling day weather is_a: core field slot_uri: MIXS:0000827 range: samp_weather_enum multivalued: false samp_well_name: annotations: expected_value: tag: expected_value value: name occurrence: tag: occurrence value: '1' description: Name of the well (e.g. BXA1123) where sample was taken title: sample well name examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sample well name is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000296 range: TextValue multivalued: false saturates_pc: annotations: expected_value: tag: expected_value value: name;measurement value preferred_unit: tag: preferred_unit value: percent occurrence: tag: occurrence value: '1' description: 'Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)' title: saturates wt% examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - saturates wt% is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000131 range: TextValue multivalued: false season: annotations: expected_value: tag: expected_value value: NCIT:C94729 occurrence: tag: occurrence value: '1' description: The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729). title: season examples: - value: autumn [NCIT:C94733] from_schema: http://w3id.org/mixs/terms aliases: - season is_a: core field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000829 range: TextValue multivalued: false season_environment: annotations: expected_value: tag: expected_value value: seasonal environment name;treatment interval and duration occurrence: tag: occurrence value: m description: Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment title: seasonal environment examples: - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - seasonal environment is_a: core field string_serialization: '{text};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0001068 range: TextValue multivalued: true season_precpt: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: millimeter occurrence: tag: occurrence value: '1' description: The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps. title: mean seasonal precipitation examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - mean seasonal precipitation is_a: core field slot_uri: MIXS:0000645 range: QuantityValue multivalued: false season_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: Mean seasonal temperature title: mean seasonal temperature examples: - value: 18 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - mean seasonal temperature is_a: core field slot_uri: MIXS:0000643 range: QuantityValue multivalued: false season_use: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The seasons the space is occupied title: seasonal use examples: - value: Winter from_schema: http://w3id.org/mixs/terms aliases: - seasonal use is_a: core field slot_uri: MIXS:0000830 range: season_use_enum multivalued: false secondary_treatment: annotations: expected_value: tag: expected_value value: secondary treatment type occurrence: tag: occurrence value: '1' description: The process for substantially degrading the biological content of the sewage title: secondary treatment examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - secondary treatment is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000351 range: TextValue multivalued: false sediment_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Information about the sediment type based on major constituents title: sediment type examples: - value: biogenous from_schema: http://w3id.org/mixs/terms aliases: - sediment type is_a: core field slot_uri: MIXS:0001078 range: sediment_type_enum multivalued: false seq_meth: annotations: expected_value: tag: expected_value value: Text or OBI description: Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103). title: sequencing method examples: - value: 454 Genome Sequencer FLX [OBI:0000702] from_schema: http://w3id.org/mixs/terms aliases: - sequencing method is_a: sequencing field string_serialization: '{termLabel} {[termID]}|{text}' slot_uri: MIXS:0000050 range: TextValue multivalued: false seq_quality_check: annotations: expected_value: tag: expected_value value: none or manually edited description: Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA title: sequence quality check examples: - value: none from_schema: http://w3id.org/mixs/terms aliases: - sequence quality check is_a: sequencing field string_serialization: '[none|manually edited]' slot_uri: MIXS:0000051 range: TextValue multivalued: false sewage_type: annotations: expected_value: tag: expected_value value: sewage type name occurrence: tag: occurrence value: '1' description: Type of wastewater treatment plant as municipial or industrial title: sewage type examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sewage type is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000215 range: TextValue multivalued: false shad_dev_water_mold: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Signs of the presence of mold or mildew on the shading device title: shading device signs of water/mold examples: - value: no presence of mold visible from_schema: http://w3id.org/mixs/terms aliases: - shading device signs of water/mold is_a: core field string_serialization: '[presence of mold visible|no presence of mold visible]' slot_uri: MIXS:0000834 range: string multivalued: false shading_device_cond: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The physical condition of the shading device at the time of sampling title: shading device condition examples: - value: new from_schema: http://w3id.org/mixs/terms aliases: - shading device condition is_a: core field slot_uri: MIXS:0000831 range: shading_device_cond_enum multivalued: false shading_device_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The location of the shading device in relation to the built structure title: shading device location examples: - value: exterior from_schema: http://w3id.org/mixs/terms aliases: - shading device location is_a: core field string_serialization: '[exterior|interior]' slot_uri: MIXS:0000832 range: TextValue multivalued: false shading_device_mat: annotations: expected_value: tag: expected_value value: material name occurrence: tag: occurrence value: '1' description: The material the shading device is composed of title: shading device material examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - shading device material is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000245 range: TextValue multivalued: false shading_device_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of shading device title: shading device type examples: - value: slatted aluminum awning from_schema: http://w3id.org/mixs/terms aliases: - shading device type is_a: core field slot_uri: MIXS:0000835 range: shading_device_type_enum multivalued: false sieving: annotations: expected_value: tag: expected_value value: design name and/or size;amount occurrence: tag: occurrence value: '1' description: Collection design of pooled samples and/or sieve size and amount of sample sieved title: composite design/sieving examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - composite design/sieving is_a: core field string_serialization: '{{text}|{float} {unit}};{float} {unit}' slot_uri: MIXS:0000322 range: TextValue multivalued: false silicate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter occurrence: tag: occurrence value: '1' description: Concentration of silicate title: silicate examples: - value: 0.05 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - silicate is_a: core field slot_uri: MIXS:0000184 range: QuantityValue multivalued: false size_frac: annotations: expected_value: tag: expected_value value: filter size value range description: Filtering pore size used in sample preparation title: size fraction selected examples: - value: 0-0.22 micrometer from_schema: http://w3id.org/mixs/terms aliases: - size fraction selected is_a: nucleic acid sequence source field string_serialization: '{float}-{float} {unit}' slot_uri: MIXS:0000017 range: TextValue multivalued: false size_frac_low: annotations: expected_value: tag: expected_value value: value preferred_unit: tag: preferred_unit value: micrometer occurrence: tag: occurrence value: '1' description: Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample title: size-fraction lower threshold examples: - value: 0.2 micrometer from_schema: http://w3id.org/mixs/terms aliases: - size-fraction lower threshold is_a: core field slot_uri: MIXS:0000735 range: QuantityValue multivalued: false size_frac_up: annotations: expected_value: tag: expected_value value: value preferred_unit: tag: preferred_unit value: micrometer occurrence: tag: occurrence value: '1' description: Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample title: size-fraction upper threshold examples: - value: 20 micrometer from_schema: http://w3id.org/mixs/terms aliases: - size-fraction upper threshold is_a: core field slot_uri: MIXS:0000736 range: QuantityValue multivalued: false slope_aspect: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree occurrence: tag: occurrence value: '1' description: The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., nw or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration. title: slope aspect examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - slope aspect is_a: core field slot_uri: MIXS:0000647 range: QuantityValue multivalued: false slope_gradient: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: percentage occurrence: tag: occurrence value: '1' description: Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer title: slope gradient examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - slope gradient is_a: core field slot_uri: MIXS:0000646 range: QuantityValue multivalued: false sludge_retent_time: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: hours occurrence: tag: occurrence value: '1' description: The time activated sludge remains in reactor title: sludge retention time examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sludge retention time is_a: core field slot_uri: MIXS:0000669 range: QuantityValue multivalued: false sodium: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Sodium concentration in the sample title: sodium examples: - value: 10.5 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - sodium is_a: core field slot_uri: MIXS:0000428 range: QuantityValue multivalued: false soil_horizon: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath title: soil horizon examples: - value: A horizon from_schema: http://w3id.org/mixs/terms aliases: - soil horizon is_a: core field slot_uri: MIXS:0001082 range: soil_horizon_enum multivalued: false soil_text_measure: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional. title: soil texture measurement examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soil texture measurement is_a: core field slot_uri: MIXS:0000335 range: QuantityValue multivalued: false soil_texture_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining soil texture title: soil texture method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soil texture method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000336 range: string multivalued: false soil_type: annotations: expected_value: tag: expected_value value: ENVO_00001998 occurrence: tag: occurrence value: '1' description: Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes. title: soil type examples: - value: plinthosol [ENVO:00002250] from_schema: http://w3id.org/mixs/terms aliases: - soil type is_a: core field string_serialization: '{termLabel} {[termID]}' slot_uri: MIXS:0000332 range: TextValue multivalued: false soil_type_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining soil series name or other lower-level classification title: soil type method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soil type method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000334 range: TextValue multivalued: false solar_irradiance: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: kilowatts per square meter per day, ergs per square centimeter per second occurrence: tag: occurrence value: '1' description: The amount of solar energy that arrives at a specific area of a surface during a specific time interval title: solar irradiance examples: - value: 1.36 kilowatts per square meter per day from_schema: http://w3id.org/mixs/terms aliases: - solar irradiance is_a: core field slot_uri: MIXS:0000112 range: QuantityValue multivalued: false soluble_inorg_mat: annotations: expected_value: tag: expected_value value: soluble inorganic material name;measurement value preferred_unit: tag: preferred_unit value: gram, microgram, mole per liter, gram per liter, parts per million occurrence: tag: occurrence value: m description: Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc. title: soluble inorganic material examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soluble inorganic material is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000672 range: TextValue multivalued: true soluble_org_mat: annotations: expected_value: tag: expected_value value: soluble organic material name;measurement value preferred_unit: tag: preferred_unit value: gram, microgram, mole per liter, gram per liter, parts per million occurrence: tag: occurrence value: m description: Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc. title: soluble organic material examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - soluble organic material is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000673 range: TextValue multivalued: true soluble_react_phosp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of soluble reactive phosphorus title: soluble reactive phosphorus examples: - value: 0.1 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - soluble reactive phosphorus is_a: core field slot_uri: MIXS:0000738 range: QuantityValue multivalued: false source_mat_id: annotations: expected_value: tag: expected_value value: 'for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer' description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2). title: source material identifiers examples: - value: MPI012345 from_schema: http://w3id.org/mixs/terms aliases: - source material identifiers is_a: nucleic acid sequence source field string_serialization: '{text}' slot_uri: MIXS:0000026 range: TextValue multivalued: false space_typ_state: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Customary or normal state of the space title: space typical state examples: - value: typically occupied from_schema: http://w3id.org/mixs/terms aliases: - space typical state is_a: core field string_serialization: '[typically occupied|typically unoccupied]' slot_uri: MIXS:0000770 range: TextValue multivalued: false specific: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: 'The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents' title: specifications examples: - value: construction from_schema: http://w3id.org/mixs/terms aliases: - specifications is_a: core field slot_uri: MIXS:0000836 range: specific_enum multivalued: false specific_humidity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: gram of air, kilogram of air occurrence: tag: occurrence value: '1' description: The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound. title: specific humidity examples: - value: 15 per kilogram of air from_schema: http://w3id.org/mixs/terms aliases: - specific humidity is_a: core field slot_uri: MIXS:0000214 range: QuantityValue multivalued: false sr_dep_env: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field title: source rock depositional environment examples: - value: Marine from_schema: http://w3id.org/mixs/terms aliases: - source rock depositional environment is_a: core field slot_uri: MIXS:0000996 range: sr_dep_env_enum multivalued: false sr_geol_age: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field' title: source rock geological age examples: - value: Silurian from_schema: http://w3id.org/mixs/terms aliases: - source rock geological age is_a: core field slot_uri: MIXS:0000997 range: sr_geol_age_enum multivalued: false sr_kerog_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If "other" is specified, please propose entry in "additional info" field' title: source rock kerogen type examples: - value: Type IV from_schema: http://w3id.org/mixs/terms aliases: - source rock kerogen type is_a: core field slot_uri: MIXS:0000994 range: sr_kerog_type_enum multivalued: false sr_lithology: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field title: source rock lithology examples: - value: Coal from_schema: http://w3id.org/mixs/terms aliases: - source rock lithology is_a: core field slot_uri: MIXS:0000995 range: sr_lithology_enum multivalued: false standing_water_regm: annotations: expected_value: tag: expected_value value: standing water type;treatment interval and duration occurrence: tag: occurrence value: m description: Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: standing water regimen examples: - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - standing water regimen is_a: core field string_serialization: '{text};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0001069 range: TextValue multivalued: true store_cond: annotations: expected_value: tag: expected_value value: storage condition type;duration occurrence: tag: occurrence value: '1' description: Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other). title: storage conditions examples: - value: -20 degree Celsius freezer;P2Y10D from_schema: http://w3id.org/mixs/terms aliases: - storage conditions is_a: core field string_serialization: '{text};{duration}' slot_uri: MIXS:0000327 range: TextValue multivalued: false substructure_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: m description: The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level title: substructure type examples: - value: basement from_schema: http://w3id.org/mixs/terms aliases: - substructure type is_a: core field slot_uri: MIXS:0000767 range: substructure_type_enum multivalued: true sulfate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of sulfate in the sample title: sulfate examples: - value: 5 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - sulfate is_a: core field slot_uri: MIXS:0000423 range: QuantityValue multivalued: false sulfate_fw: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Original sulfate concentration in the hydrocarbon resource title: sulfate in formation water examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - sulfate in formation water is_a: core field slot_uri: MIXS:0000407 range: QuantityValue multivalued: false sulfide: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of sulfide in the sample title: sulfide examples: - value: 2 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - sulfide is_a: core field slot_uri: MIXS:0000424 range: QuantityValue multivalued: false surf_air_cont: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: m description: Contaminant identified on surface title: surface-air contaminant examples: - value: radon from_schema: http://w3id.org/mixs/terms aliases: - surface-air contaminant is_a: core field slot_uri: MIXS:0000759 range: surf_air_cont_enum multivalued: true surf_humidity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: percentage occurrence: tag: occurrence value: '1' description: 'Surfaces: water activity as a function of air and material moisture' title: surface humidity examples: - value: 10% from_schema: http://w3id.org/mixs/terms aliases: - surface humidity is_a: core field slot_uri: MIXS:0000123 range: QuantityValue multivalued: false surf_material: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Surface materials at the point of sampling title: surface material examples: - value: wood from_schema: http://w3id.org/mixs/terms aliases: - surface material is_a: core field slot_uri: MIXS:0000758 range: surf_material_enum multivalued: false surf_moisture: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: parts per million, gram per cubic meter, gram per square meter occurrence: tag: occurrence value: '1' description: Water held on a surface title: surface moisture examples: - value: 0.01 gram per square meter from_schema: http://w3id.org/mixs/terms aliases: - surface moisture is_a: core field slot_uri: MIXS:0000128 range: QuantityValue multivalued: false surf_moisture_ph: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: ph measurement of surface title: surface moisture pH examples: - value: '7' from_schema: http://w3id.org/mixs/terms aliases: - surface moisture pH is_a: core field slot_uri: MIXS:0000760 range: double multivalued: false surf_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: Temperature of the surface at the time of sampling title: surface temperature examples: - value: 15 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - surface temperature is_a: core field slot_uri: MIXS:0000125 range: QuantityValue multivalued: false suspend_part_matter: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Concentration of suspended particulate matter title: suspended particulate matter examples: - value: 0.5 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - suspended particulate matter is_a: core field slot_uri: MIXS:0000741 range: QuantityValue multivalued: false suspend_solids: annotations: expected_value: tag: expected_value value: suspended solid name;measurement value preferred_unit: tag: preferred_unit value: gram, microgram, milligram per liter, mole per liter, gram per liter, part per million occurrence: tag: occurrence value: m description: Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances title: suspended solids examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - suspended solids is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000150 range: TextValue multivalued: true tan: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: 'Total Acid Number¬†(TAN) is a measurement of acidity that is determined by the amount of¬†potassium hydroxide¬†in milligrams that is needed to neutralize the acids in one gram of oil.¬†It is an important quality measurement of¬†crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)' title: total acid number examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total acid number is_a: core field slot_uri: MIXS:0000120 range: QuantityValue multivalued: false target_gene: annotations: expected_value: tag: expected_value value: gene name description: Targeted gene or locus name for marker gene studies title: target gene examples: - value: 16S rRNA, 18S rRNA, nif, amoA, rpo from_schema: http://w3id.org/mixs/terms aliases: - target gene is_a: sequencing field string_serialization: '{text}' slot_uri: MIXS:0000044 range: TextValue multivalued: false target_subfragment: annotations: expected_value: tag: expected_value value: gene fragment name description: Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA title: target subfragment examples: - value: V6, V9, ITS from_schema: http://w3id.org/mixs/terms aliases: - target subfragment is_a: sequencing field string_serialization: '{text}' slot_uri: MIXS:0000045 range: TextValue multivalued: false temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius description: Temperature of the sample at the time of sampling. title: temperature examples: - value: 25 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - temperature is_a: environment field slot_uri: MIXS:0000113 range: QuantityValue multivalued: false temp_out: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: '1' description: The recorded temperature value at sampling time outside title: temperature outside house examples: - value: 5 degree Celsius from_schema: http://w3id.org/mixs/terms aliases: - temperature outside house is_a: core field slot_uri: MIXS:0000197 range: QuantityValue multivalued: false tertiary_treatment: annotations: expected_value: tag: expected_value value: tertiary treatment type occurrence: tag: occurrence value: '1' description: The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment title: tertiary treatment examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - tertiary treatment is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000352 range: TextValue multivalued: false tidal_stage: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Stage of tide title: tidal stage examples: - value: high tide from_schema: http://w3id.org/mixs/terms aliases: - tidal stage is_a: core field slot_uri: MIXS:0000750 range: tidal_stage_enum multivalued: false tillage: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: m description: Note method(s) used for tilling title: history/tillage examples: - value: chisel from_schema: http://w3id.org/mixs/terms aliases: - history/tillage is_a: core field slot_uri: MIXS:0001081 range: tillage_enum multivalued: true tiss_cult_growth_med: annotations: expected_value: tag: expected_value value: PMID,DOI,url or free text occurrence: tag: occurrence value: '1' description: Description of plant tissue culture growth media used title: tissue culture growth media examples: - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf from_schema: http://w3id.org/mixs/terms aliases: - tissue culture growth media is_a: core field string_serialization: '{PMID}|{DOI}|{URL}|{text}' slot_uri: MIXS:0001070 range: TextValue multivalued: false toluene: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of toluene in the sample title: toluene examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - toluene is_a: core field slot_uri: MIXS:0000154 range: QuantityValue multivalued: false tot_carb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter occurrence: tag: occurrence value: '1' description: Total carbon content title: total carbon examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total carbon is_a: core field slot_uri: MIXS:0000525 range: QuantityValue multivalued: false tot_depth_water_col: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: Measurement of total depth of water column title: total depth of water column examples: - value: 500 meter from_schema: http://w3id.org/mixs/terms aliases: - total depth of water column is_a: core field slot_uri: MIXS:0000634 range: QuantityValue multivalued: false tot_diss_nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter occurrence: tag: occurrence value: '1' description: 'Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen' title: total dissolved nitrogen examples: - value: 40 microgram per liter from_schema: http://w3id.org/mixs/terms aliases: - total dissolved nitrogen is_a: core field slot_uri: MIXS:0000744 range: QuantityValue multivalued: false tot_inorg_nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter occurrence: tag: occurrence value: '1' description: Total inorganic nitrogen content title: total inorganic nitrogen examples: - value: 40 microgram per liter from_schema: http://w3id.org/mixs/terms aliases: - total inorganic nitrogen is_a: core field slot_uri: MIXS:0000745 range: QuantityValue multivalued: false tot_iron: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, milligram per kilogram occurrence: tag: occurrence value: '1' description: Concentration of total iron in the sample title: total iron examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total iron is_a: core field slot_uri: MIXS:0000105 range: QuantityValue multivalued: false tot_nitro: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, micromole per liter, milligram per liter occurrence: tag: occurrence value: '1' description: 'Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen' title: total nitrogen concentration examples: - value: 50 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - total nitrogen concentration is_a: core field slot_uri: MIXS:0000102 range: QuantityValue multivalued: false tot_nitro_cont_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining the total nitrogen title: total nitrogen content method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total nitrogen content method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000338 range: string multivalued: false tot_nitro_content: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, micromole per liter, milligram per liter occurrence: tag: occurrence value: '1' description: Total nitrogen content of the sample title: total nitrogen content examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total nitrogen content is_a: core field slot_uri: MIXS:0000530 range: QuantityValue multivalued: false tot_org_c_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining total organic carbon title: total organic carbon method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total organic carbon method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000337 range: TextValue multivalued: false tot_org_carb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: gram Carbon per kilogram sample material occurrence: tag: occurrence value: '1' description: 'Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content' title: total organic carbon examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total organic carbon is_a: core field slot_uri: MIXS:0000533 range: QuantityValue multivalued: false tot_part_carb: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, micromole per liter occurrence: tag: occurrence value: '1' description: Total particulate carbon content title: total particulate carbon examples: - value: 35 micromole per liter from_schema: http://w3id.org/mixs/terms aliases: - total particulate carbon is_a: core field slot_uri: MIXS:0000747 range: QuantityValue multivalued: false tot_phosp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: micromole per liter, milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: 'Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus' title: total phosphorus examples: - value: 0.03 milligram per liter from_schema: http://w3id.org/mixs/terms aliases: - total phosphorus is_a: core field slot_uri: MIXS:0000117 range: QuantityValue multivalued: false tot_phosphate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: microgram per liter, micromole per liter occurrence: tag: occurrence value: '1' description: Total amount or concentration of phosphate title: total phosphate examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total phosphate is_a: core field slot_uri: MIXS:0000689 range: QuantityValue multivalued: false tot_sulfur: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of total sulfur in the sample title: total sulfur examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - total sulfur is_a: core field slot_uri: MIXS:0000419 range: QuantityValue multivalued: false train_line: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The subway line name title: train line examples: - value: red from_schema: http://w3id.org/mixs/terms aliases: - train line is_a: core field slot_uri: MIXS:0000837 range: train_line_enum multivalued: false train_stat_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The train station collection location title: train station collection location examples: - value: forest hills from_schema: http://w3id.org/mixs/terms aliases: - train station collection location is_a: core field slot_uri: MIXS:0000838 range: train_stat_loc_enum multivalued: false train_stop_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The train stop collection location title: train stop collection location examples: - value: end from_schema: http://w3id.org/mixs/terms aliases: - train stop collection location is_a: core field slot_uri: MIXS:0000839 range: train_stop_loc_enum multivalued: false turbidity: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: formazin turbidity unit, formazin nephelometric units occurrence: tag: occurrence value: '1' description: Measure of the amount of cloudiness or haziness in water caused by individual particles title: turbidity examples: - value: 0.3 nephelometric turbidity units from_schema: http://w3id.org/mixs/terms aliases: - turbidity is_a: core field slot_uri: MIXS:0000191 range: QuantityValue multivalued: false tvdss_of_hcr_press: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m). title: depth (TVDSS) of hydrocarbon resource pressure examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - depth (TVDSS) of hydrocarbon resource pressure is_a: core field slot_uri: MIXS:0000397 range: QuantityValue multivalued: false tvdss_of_hcr_temp: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter occurrence: tag: occurrence value: '1' description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m). title: depth (TVDSS) of hydrocarbon resource temperature examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - depth (TVDSS) of hydrocarbon resource temperature is_a: core field slot_uri: MIXS:0000394 range: QuantityValue multivalued: false typ_occup_density: annotations: expected_value: tag: expected_value value: measurement value occurrence: tag: occurrence value: '1' description: Customary or normal density of occupants title: typical occupant density examples: - value: '25' from_schema: http://w3id.org/mixs/terms aliases: - typical occupant density is_a: core field slot_uri: MIXS:0000771 range: double multivalued: false ventilation_rate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: cubic meter per minute, liters per second occurrence: tag: occurrence value: '1' description: Ventilation rate of the system in the sampled premises title: ventilation rate examples: - value: 750 cubic meter per minute from_schema: http://w3id.org/mixs/terms aliases: - ventilation rate is_a: core field slot_uri: MIXS:0000114 range: QuantityValue multivalued: false ventilation_type: annotations: expected_value: tag: expected_value value: ventilation type name occurrence: tag: occurrence value: '1' description: Ventilation system used in the sampled premises title: ventilation type examples: - value: Operable windows from_schema: http://w3id.org/mixs/terms aliases: - ventilation type is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000756 range: TextValue multivalued: false vfa: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of Volatile Fatty Acids in the sample title: volatile fatty acids examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - volatile fatty acids is_a: core field slot_uri: MIXS:0000152 range: QuantityValue multivalued: false vfa_fw: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter occurrence: tag: occurrence value: '1' description: Original volatile fatty acid concentration in the hydrocarbon resource title: vfa in formation water examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - vfa in formation water is_a: core field slot_uri: MIXS:0000408 range: QuantityValue multivalued: false vis_media: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The building visual media title: visual media examples: - value: 3D scans from_schema: http://w3id.org/mixs/terms aliases: - visual media is_a: core field slot_uri: MIXS:0000840 range: vis_media_enum multivalued: false viscosity: annotations: expected_value: tag: expected_value value: measurement value;measurement value preferred_unit: tag: preferred_unit value: cP at degree Celsius occurrence: tag: occurrence value: '1' description: A measure of oil's resistance¬†to gradual deformation by¬†shear stress¬†or¬†tensile stress (e.g. 3.5 cp; 100 ¬∞C) title: viscosity examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - viscosity is_a: core field string_serialization: '{float} {unit};{float} {unit}' slot_uri: MIXS:0000126 range: TextValue multivalued: false volatile_org_comp: annotations: expected_value: tag: expected_value value: volatile organic compound name;measurement value preferred_unit: tag: preferred_unit value: microgram per cubic meter, parts per million, nanogram per liter occurrence: tag: occurrence value: m description: Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound title: volatile organic compounds examples: - value: formaldehyde;500 nanogram per liter from_schema: http://w3id.org/mixs/terms aliases: - volatile organic compounds is_a: core field string_serialization: '{text};{float} {unit}' slot_uri: MIXS:0000115 range: TextValue multivalued: true wall_area: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: square meter occurrence: tag: occurrence value: '1' description: The total area of the sampled room's walls title: wall area examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - wall area is_a: core field slot_uri: MIXS:0000198 range: QuantityValue multivalued: false wall_const_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The building class of the wall defined by the composition of the building elements and fire-resistance rating. title: wall construction type examples: - value: fire resistive from_schema: http://w3id.org/mixs/terms aliases: - wall construction type is_a: core field slot_uri: MIXS:0000841 range: wall_const_type_enum multivalued: false wall_finish_mat: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The material utilized to finish the outer most layer of the wall title: wall finish material examples: - value: wood from_schema: http://w3id.org/mixs/terms aliases: - wall finish material is_a: core field slot_uri: MIXS:0000842 range: wall_finish_mat_enum multivalued: false wall_height: annotations: expected_value: tag: expected_value value: value preferred_unit: tag: preferred_unit value: centimeter occurrence: tag: occurrence value: '1' description: The average height of the walls in the sampled room title: wall height examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - wall height is_a: core field slot_uri: MIXS:0000221 range: QuantityValue multivalued: false wall_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The relative location of the wall within the room title: wall location examples: - value: north from_schema: http://w3id.org/mixs/terms aliases: - wall location is_a: core field slot_uri: MIXS:0000843 range: wall_loc_enum multivalued: false wall_surf_treatment: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The surface treatment of interior wall title: wall surface treatment examples: - value: paneling from_schema: http://w3id.org/mixs/terms aliases: - wall surface treatment is_a: core field slot_uri: MIXS:0000845 range: wall_surf_treatment_enum multivalued: false wall_texture: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The feel, appearance, or consistency of a wall surface title: wall texture examples: - value: popcorn from_schema: http://w3id.org/mixs/terms aliases: - wall texture is_a: core field slot_uri: MIXS:0000846 range: wall_texture_enum multivalued: false wall_thermal_mass: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: joule per degree Celsius occurrence: tag: occurrence value: '1' description: The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint title: wall thermal mass examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - wall thermal mass is_a: core field slot_uri: MIXS:0000222 range: QuantityValue multivalued: false wall_water_mold: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Signs of the presence of mold or mildew on a wall title: wall signs of water/mold examples: - value: no presence of mold visible from_schema: http://w3id.org/mixs/terms aliases: - wall signs of water/mold is_a: core field string_serialization: '[presence of mold visible|no presence of mold visible]' slot_uri: MIXS:0000844 range: TextValue multivalued: false wastewater_type: annotations: expected_value: tag: expected_value value: wastewater type name occurrence: tag: occurrence value: '1' description: The origin of wastewater such as human waste, rainfall, storm drains, etc. title: wastewater type examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - wastewater type is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000353 range: TextValue multivalued: false water_cont_soil_meth: annotations: expected_value: tag: expected_value value: PMID,DOI or url occurrence: tag: occurrence value: '1' description: Reference or method used in determining the water content of soil title: water content method examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - water content method is_a: core field string_serialization: '{PMID}|{DOI}|{URL}' slot_uri: MIXS:0000323 range: string multivalued: false water_content: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: gram per gram or cubic centimeter per cubic centimeter occurrence: tag: occurrence value: '1' description: Water content measurement title: water content examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - water content is_a: core field slot_uri: MIXS:0000185 range: string multivalued: false water_current: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: cubic meter per second, knots occurrence: tag: occurrence value: '1' description: Measurement of magnitude and direction of flow within a fluid title: water current examples: - value: 10 cubic meter per second from_schema: http://w3id.org/mixs/terms aliases: - water current is_a: core field slot_uri: MIXS:0000203 range: QuantityValue multivalued: false water_cut: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: percent occurrence: tag: occurrence value: '1' description: Current amount of water (%) in a produced fluid stream; or the average of the combined streams title: water cut examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - water cut is_a: core field slot_uri: MIXS:0000454 range: QuantityValue multivalued: false water_feat_size: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: square meter occurrence: tag: occurrence value: '1' description: The size of the water feature title: water feature size examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - water feature size is_a: core field slot_uri: MIXS:0000223 range: QuantityValue multivalued: false water_feat_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of water feature present within the building being sampled title: water feature type examples: - value: stream from_schema: http://w3id.org/mixs/terms aliases: - water feature type is_a: core field slot_uri: MIXS:0000847 range: water_feat_type_enum multivalued: false water_prod_rate: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: cubic meter per day occurrence: tag: occurrence value: '1' description: Water production rates per well (e.g. 987 m3 / day) title: water production rate examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - water production rate is_a: core field slot_uri: MIXS:0000453 range: QuantityValue multivalued: false water_temp_regm: annotations: expected_value: tag: expected_value value: measurement value;treatment interval and duration preferred_unit: tag: preferred_unit value: degree Celsius occurrence: tag: occurrence value: m description: Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: water temperature regimen examples: - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - water temperature regimen is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000590 range: TextValue multivalued: true watering_regm: annotations: expected_value: tag: expected_value value: measurement value;treatment interval and duration preferred_unit: tag: preferred_unit value: milliliter, liter occurrence: tag: occurrence value: m description: Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens title: watering regimen examples: - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M from_schema: http://w3id.org/mixs/terms aliases: - watering regimen is_a: core field string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}' slot_uri: MIXS:0000591 range: TextValue multivalued: true weekday: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The day of the week when sampling occurred title: weekday examples: - value: Sunday from_schema: http://w3id.org/mixs/terms aliases: - weekday is_a: core field slot_uri: MIXS:0000848 range: weekday_enum multivalued: false win: annotations: expected_value: tag: expected_value value: text occurrence: tag: occurrence value: '1' description: 'A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)' title: well identification number examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - well identification number is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000297 range: TextValue multivalued: false wind_direction: annotations: expected_value: tag: expected_value value: wind direction name occurrence: tag: occurrence value: '1' description: Wind direction is the direction from which a wind originates title: wind direction examples: - value: Northwest from_schema: http://w3id.org/mixs/terms aliases: - wind direction is_a: core field string_serialization: '{text}' slot_uri: MIXS:0000757 range: TextValue multivalued: false wind_speed: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: meter per second, kilometer per hour occurrence: tag: occurrence value: '1' description: Speed of wind measured at the time of sampling title: wind speed examples: - value: 21 kilometer per hour from_schema: http://w3id.org/mixs/terms aliases: - wind speed is_a: core field slot_uri: MIXS:0000118 range: QuantityValue multivalued: false window_cond: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The physical condition of the window at the time of sampling title: window condition examples: - value: rupture from_schema: http://w3id.org/mixs/terms aliases: - window condition is_a: core field slot_uri: MIXS:0000849 range: window_cond_enum multivalued: false window_cover: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of window covering title: window covering examples: - value: curtains from_schema: http://w3id.org/mixs/terms aliases: - window covering is_a: core field slot_uri: MIXS:0000850 range: window_cover_enum multivalued: false window_horiz_pos: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The horizontal position of the window on the wall title: window horizontal position examples: - value: middle from_schema: http://w3id.org/mixs/terms aliases: - window horizontal position is_a: core field slot_uri: MIXS:0000851 range: window_horiz_pos_enum multivalued: false window_loc: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The relative location of the window within the room title: window location examples: - value: west from_schema: http://w3id.org/mixs/terms aliases: - window location is_a: core field slot_uri: MIXS:0000852 range: window_loc_enum multivalued: false window_mat: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of material used to finish a window title: window material examples: - value: wood from_schema: http://w3id.org/mixs/terms aliases: - window material is_a: core field slot_uri: MIXS:0000853 range: window_mat_enum multivalued: false window_open_freq: annotations: expected_value: tag: expected_value value: value occurrence: tag: occurrence value: '1' description: The number of times windows are opened per week title: window open frequency examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - window open frequency is_a: core field slot_uri: MIXS:0000246 range: TextValue multivalued: false window_size: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: inch, meter occurrence: tag: occurrence value: '1' description: The window's length and width title: window area/size examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - window area/size is_a: core field string_serialization: '{float} {unit} x {float} {unit}' slot_uri: MIXS:0000224 range: TextValue multivalued: false window_status: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Defines whether the windows were open or closed during environmental testing title: window status examples: - value: open from_schema: http://w3id.org/mixs/terms aliases: - window status is_a: core field string_serialization: '[closed|open]' slot_uri: MIXS:0000855 range: TextValue multivalued: false window_type: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The type of windows title: window type examples: - value: fixed window from_schema: http://w3id.org/mixs/terms aliases: - window type is_a: core field slot_uri: MIXS:0000856 range: window_type_enum multivalued: false window_vert_pos: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: The vertical position of the window on the wall title: window vertical position examples: - value: middle from_schema: http://w3id.org/mixs/terms aliases: - window vertical position is_a: core field slot_uri: MIXS:0000857 range: window_vert_pos_enum multivalued: false window_water_mold: annotations: expected_value: tag: expected_value value: enumeration occurrence: tag: occurrence value: '1' description: Signs of the presence of mold or mildew on the window. title: window signs of water/mold examples: - value: no presence of mold visible from_schema: http://w3id.org/mixs/terms aliases: - window signs of water/mold is_a: core field string_serialization: '[presence of mold visible|no presence of mold visible]' slot_uri: MIXS:0000854 range: TextValue multivalued: false xylene: annotations: expected_value: tag: expected_value value: measurement value preferred_unit: tag: preferred_unit value: milligram per liter, parts per million occurrence: tag: occurrence value: '1' description: Concentration of xylene in the sample title: xylene examples: - value: '' from_schema: http://w3id.org/mixs/terms aliases: - xylene is_a: core field slot_uri: MIXS:0000156 range: QuantityValue multivalued: false core field: description: basic fields from_schema: http://w3id.org/mixs/terms abstract: true environment field: description: field describing environmental aspect of a sample from_schema: http://w3id.org/mixs/terms abstract: true investigation field: description: field describing aspect of the investigation/study to which the sample belongs from_schema: http://w3id.org/mixs/terms abstract: true nucleic acid sequence source field: from_schema: http://w3id.org/mixs/terms abstract: true sequencing field: from_schema: http://w3id.org/mixs/terms abstract: true source_file: assets/other_mixs_yaml_files/mixs_template.yaml