#!/bin/bash
#$ -P radiant
#$ -l rmem=40G
#$ -l mem=40G


#Load the new curl module
module load libs/gcc/4.4.7/curl/7.47.1
#Load the new xzutils module
module load apps/gcc/4.4.7/xzutils/5.2.2
#Load the new zlib module
module load libs/gcc/4.4.7/zlib/1.2.8
#Load the new bzip2 module
module load libs/gcc/4.4.7/bzip2/1.0.6
export LDFLAGS="-L/usr/local/packages6/libs/gcc/4.4.7/bzip2/1.0.6/lib/"
#load pcre module
module load libs/gcc/4.4.7/pcre/8.37


#Set up environment variables and create directories
version=3.3.1
install_dir=/usr/local/packages6/R/$version
build_dir=~/R-$version-build
mkdir -p $build_dir
mkdir -p $install_dir

cd $build_dir

#Set up modules
module load libs/gcc/lapack
module load libs/gcc/blas

#Download, untar and enter build directory
wget https://cran.r-project.org/src/base/R-3/R-$version.tar.gz
tar -xzf ./R-$version.tar.gz
cd R-$version

#Configure and build
./configure --prefix $install_dir --with-blas --with-lapack --enable-R-shlib 2>&1 | tee config-R-$version.log
make 2>&1 | tee make-R-$version.log

#Check
make check 2>&1 | tee make_check-R-$version.log

#Install test directory
make install-tests

#Install
make install

#Build libRmath.so
cd $build_dir/R-$version/src/nmath/standalone
make 
mv libRmath.* $install_dir/lib64/R/lib

#Copy install,configure and test log files
mkdir -p $install_dir/install_logs
cd $build_dir/R-$version
mv ./*.log $install_dir/install_logs