""" .. _ex-sim-evoked: ============================== Generate simulated evoked data ============================== Use :func:`~mne.simulation.simulate_sparse_stc` to simulate evoked data. """ # Author: Daniel Strohmeier # Alexandre Gramfort # # License: BSD-3-Clause # Copyright the MNE-Python contributors. # %% import matplotlib.pyplot as plt import numpy as np import mne from mne.datasets import sample from mne.simulation import simulate_evoked, simulate_sparse_stc from mne.time_frequency import fit_iir_model_raw from mne.viz import plot_sparse_source_estimates print(__doc__) # %% # Load real data as templates data_path = sample.data_path() meg_path = data_path / "MEG" / "sample" raw = mne.io.read_raw_fif(meg_path / "sample_audvis_raw.fif") proj = mne.read_proj(meg_path / "sample_audvis_ecg-proj.fif") raw.add_proj(proj) raw.info["bads"] = ["MEG 2443", "EEG 053"] # mark bad channels fwd_fname = meg_path / "sample_audvis-meg-eeg-oct-6-fwd.fif" ave_fname = meg_path / "sample_audvis-no-filter-ave.fif" cov_fname = meg_path / "sample_audvis-cov.fif" fwd = mne.read_forward_solution(fwd_fname) fwd = mne.pick_types_forward(fwd, meg=True, eeg=True, exclude=raw.info["bads"]) cov = mne.read_cov(cov_fname) info = mne.io.read_info(ave_fname) label_names = ["Aud-lh", "Aud-rh"] labels = [mne.read_label(meg_path / "labels" / f"{ln}.label") for ln in label_names] # %% # Generate source time courses from 2 dipoles and the corresponding evoked data times = np.arange(300, dtype=np.float64) / raw.info["sfreq"] - 0.1 rng = np.random.RandomState(42) def data_fun(times): """Generate random source time courses.""" return ( 50e-9 * np.sin(30.0 * times) * np.exp(-((times - 0.15 + 0.05 * rng.randn(1)) ** 2) / 0.01) ) stc = simulate_sparse_stc( fwd["src"], n_dipoles=2, times=times, random_state=42, labels=labels, data_fun=data_fun, ) # %% # Generate noisy evoked data picks = mne.pick_types(raw.info, meg=True, exclude="bads") iir_filter = fit_iir_model_raw(raw, order=5, picks=picks, tmin=60, tmax=180)[1] nave = 100 # simulate average of 100 epochs evoked = simulate_evoked( fwd, stc, info, cov, nave=nave, use_cps=True, iir_filter=iir_filter ) # %% # Plot plot_sparse_source_estimates( fwd["src"], stc, bgcolor=(1, 1, 1), opacity=0.5, high_resolution=True ) plt.figure() plt.psd(evoked.data[0]) evoked.plot(time_unit="s")