VisualAnalytics
type: Ontology
version info: --- http://www.co-ode.org/ontologies/amino-acid/2006/05/18/amino-acid.owl# version 1.2, copyright The University of Manchester, Nick Drummond, Georgina Moulton, Robert Stevens, Phil Lord --- http://semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics# version 0.2, copyright The University of Paris-Sud, Mikael Trellet ---
comment: Amino acids and their properties = http://www.co-ode.org/ontologies/amino-acid/2006/05/18/amino-acid.owl# Link between Structural Biology concepts and analytical components = http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#
version info: in progress

Chain
type: Class
equivalent class: Restriction
  on property: is composed of
  on class: Residue
  min qualified cardinality: 1
equivalent class: Restriction
  on property: is composed of
  all values from: Residue
subclass of: Molecule

HistidineP
type: Class
equivalent class: Histidine
subclass of: AminoAcid
subclass of: Aromatic
subclass of: Hydrophilic
subclass of: Large
subclass of: Polar
subclass of: Positive
short name: hsp

Alanine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Neutral
subclass of: Non-Polar
subclass of: Tiny
disjoint with: Arginine
disjoint with: Asparagine
disjoint with: Aspartate
disjoint with: Cysteine
disjoint with: Glutamine
disjoint with: Glutamate
disjoint with: Glycine
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: ala

Arginine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Large
subclass of: Polar
subclass of: Positive
disjoint with: Asparagine
disjoint with: Aspartate
disjoint with: Cysteine
disjoint with: Glutamine
disjoint with: Glutamate
disjoint with: Glycine
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: arg

Asparagine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Neutral
subclass of: Polar
subclass of: Small
disjoint with: Aspartate
disjoint with: Cysteine
disjoint with: Glutamine
disjoint with: Glutamate
disjoint with: Glycine
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
version info: TODO: Should this be Aliphatic?
short name: asn

Aspartate
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Negative
subclass of: Polar
subclass of: Small
disjoint with: Cysteine
disjoint with: Glutamine
disjoint with: Glutamate
disjoint with: Glycine
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
version info: TODO: Aspartate?
short name: asp

Cysteine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Neutral
subclass of: Polar
subclass of: Small
disjoint with: Glutamine
disjoint with: Glutamate
disjoint with: Glycine
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: cys

Glutamine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Large
subclass of: Neutral
subclass of: Polar
disjoint with: Glutamate
disjoint with: Glycine
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: gln

Glutamate
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Negative
subclass of: Polar
subclass of: Small
disjoint with: Glycine
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: glu

Glycine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Neutral
subclass of: Non-Polar
subclass of: Tiny
disjoint with: Histidine
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: gly

Histidine
type: Class
subclass of: AminoAcid
subclass of: Aromatic
subclass of: Hydrophilic
subclass of: Large
subclass of: Polar
subclass of: Positive
disjoint with: Isoleucine
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: his

Isoleucine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Large
subclass of: Neutral
subclass of: Non-Polar
disjoint with: Leucine
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: ile

Leucine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Large
subclass of: Neutral
subclass of: Non-Polar
disjoint with: Lysine
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: leu

Lysine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Large
subclass of: Polar
subclass of: Positive
disjoint with: Methionine
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: lys

Methionine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Large
subclass of: Neutral
subclass of: Non-Polar
disjoint with: Phenylalanine
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: met

Phenylalanine
type: Class
subclass of: AminoAcid
subclass of: Aromatic
subclass of: Hydrophobic
subclass of: Large
subclass of: Neutral
subclass of: Non-Polar
disjoint with: Proline
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: phe

Proline
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Neutral
subclass of: Non-Polar
subclass of: Small
disjoint with: Serine
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: pro

Serine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Neutral
subclass of: Polar
subclass of: Tiny
disjoint with: Threonine
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: ser

Threonine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophilic
subclass of: Neutral
subclass of: Polar
subclass of: Tiny
disjoint with: Tryptophan
disjoint with: Tyrosine
disjoint with: Valine
short name: thr

Tryptophan
type: Class
subclass of: AminoAcid
subclass of: Aromatic
subclass of: Hydrophobic
subclass of: Large
subclass of: Neutral
subclass of: Non-Polar
disjoint with: Tyrosine
disjoint with: Valine
short name: trp

Tyrosine
type: Class
subclass of: AminoAcid
subclass of: Aromatic
subclass of: Hydrophobic
subclass of: Large
subclass of: Neutral
subclass of: Polar
disjoint with: Valine
short name: tyr

Valine
type: Class
subclass of: Aliphatic
subclass of: AminoAcid
subclass of: Hydrophobic
subclass of: Neutral
subclass of: Non-Polar
subclass of: Small
short name: val