@prefix : . @prefix my: . @prefix owl: . @prefix rdf: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @prefix amino-acid: . @base . rdf:type owl:Ontology ; owl:versionInfo """--- http://www.co-ode.org/ontologies/amino-acid/2006/05/18/amino-acid.owl# version 1.2, copyright The University of Manchester, Nick Drummond, Georgina Moulton, Robert Stevens, Phil Lord --- http://semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics# version 0.2, copyright The University of Paris-Sud, Mikael Trellet ---"""^^xsd:string ; rdfs:comment """Amino acids and their properties = http://www.co-ode.org/ontologies/amino-acid/2006/05/18/amino-acid.owl# Link between Structural Biology concepts and analytical components = http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#"""^^xsd:string ; owl:versionInfo "in progress"^^xsd:string . ################################################################# # # Annotation properties # ################################################################# ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#shortName :shortName rdf:type owl:AnnotationProperty . ################################################################# # # Object Properties # ################################################################# ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#belongs_to :belongs_to rdf:type owl:ObjectProperty , owl:TransitiveProperty ; rdfs:domain :Molecule ; rdfs:range :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#compose :compose rdf:type owl:ObjectProperty , owl:TransitiveProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#hasCharge :hasCharge rdf:type owl:FunctionalProperty , owl:ObjectProperty ; rdfs:domain :AminoAcid ; rdfs:range :Charge ; rdfs:subPropertyOf :has_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#hasHydrophobicity :hasHydrophobicity rdf:type owl:FunctionalProperty , owl:ObjectProperty ; rdfs:domain :AminoAcid ; rdfs:range :Hydrophobicity ; rdfs:subPropertyOf :has_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#hasPolarity :hasPolarity rdf:type owl:FunctionalProperty , owl:ObjectProperty ; rdfs:domain :AminoAcid ; rdfs:range :Polarity ; rdfs:subPropertyOf :has_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#hasSideChainStructure :hasSideChainStructure rdf:type owl:FunctionalProperty , owl:ObjectProperty ; rdfs:domain :AminoAcid ; rdfs:range :SideChainStructure ; rdfs:subPropertyOf :has_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#hasSize :hasSize rdf:type owl:FunctionalProperty , owl:ObjectProperty ; rdfs:domain :AminoAcid ; rdfs:range :Size ; rdfs:subPropertyOf :has_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#has_property :has_property rdf:type owl:AsymmetricProperty , owl:ObjectProperty ; rdfs:domain :Biological_component ; rdfs:range :Property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#is_composed_of :is_composed_of rdf:type owl:ObjectProperty , owl:TransitiveProperty ; owl:inverseOf :compose . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#represent :represent rdf:type owl:ObjectProperty , owl:TransitiveProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#require :require rdf:type owl:ObjectProperty ; rdfs:domain :Action ; rdfs:range :Object , :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#structure :structure rdf:type owl:AsymmetricProperty , owl:ObjectProperty ; rdfs:domain :AminoAcid ; rdfs:range :Secondary_structure . ################################################################# # # Data properties # ################################################################# ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#X_type :X_type rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#X_value :X_value rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Y_type :Y_type rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Y_value :Y_value rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Z_value :Z_value rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#atom_id :atom_id rdf:type owl:DatatypeProperty ; rdfs:range xsd:int . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#atom_type :atom_type rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#chain_id :chain_id rdf:type owl:DatatypeProperty ; rdfs:range xsd:int . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#charge :charge rdf:type owl:DatatypeProperty ; rdfs:domain :AminoAcid ; rdfs:range xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#energy :energy rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#hydropathy :hydropathy rdf:type owl:DatatypeProperty ; rdfs:domain :AminoAcid ; rdfs:range xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#id :id rdf:type owl:DatatypeProperty ; rdfs:range xsd:int . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#model_id :model_id rdf:type owl:DatatypeProperty ; rdfs:range xsd:int . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#polarity :polarity rdf:type owl:DatatypeProperty ; rdfs:domain :AminoAcid ; rdfs:range xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#pos_x :pos_x rdf:type owl:DatatypeProperty ; rdfs:range xsd:float . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#pos_y :pos_y rdf:type owl:DatatypeProperty ; rdfs:range xsd:double . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#pos_z :pos_z rdf:type owl:DatatypeProperty ; rdfs:range xsd:double . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#residue_id :residue_id rdf:type owl:DatatypeProperty ; rdfs:range xsd:int . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#rmsd_to_reference :rmsd_to_reference rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#shortName :shortName rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#side_chain :side_chain rdf:type owl:DatatypeProperty ; rdfs:domain :AminoAcid ; rdfs:range xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#size :size rdf:type owl:DatatypeProperty ; rdfs:domain :AminoAcid ; rdfs:range xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#temperature :temperature rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#time_frame :time_frame rdf:type owl:DatatypeProperty ; rdfs:range xsd:int . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#uniq_id :uniq_id rdf:type owl:DatatypeProperty . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#value_type :value_type rdf:type owl:DatatypeProperty ; rdfs:range xsd:string . ################################################################# # # Classes # ################################################################# ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Action :Action rdf:type owl:Class . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Adenine :Adenine rdf:type owl:Class ; rdfs:subClassOf :Nucleotid . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Aliphatic :Aliphatic rdf:type owl:Class ; rdfs:subClassOf :SideChainStructure ; owl:disjointWith :Aromatic . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#AminoAcid :AminoAcid rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( :ala :arg :asn :asp :cys :gln :glu :gly :his :ile :leu :lys :met :phe :pro :ser :thr :trp :tyr :val ) ] ; rdfs:subClassOf :Residue . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Analytical_component :Analytical_component rdf:type owl:Class ; rdfs:subClassOf :Object . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Anion :Anion rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty :hasCharge ; owl:allValuesFrom :Negative ] ; rdfs:subClassOf :Ion . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Area :Area rdf:type owl:Class ; rdfs:subClassOf :Analytical_component . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Aromatic :Aromatic rdf:type owl:Class ; rdfs:subClassOf :SideChainStructure . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Atom :Atom rdf:type owl:Class ; rdfs:subClassOf :Biological_component ; rdfs:comment :Atom_type , :Id ; rdfs:isDefinedBy :time_frame . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Atomid :Atomid rdf:type owl:Class ; rdfs:subClassOf :Identifier . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Attribute :Attribute rdf:type owl:Class . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Axis :Axis rdf:type owl:Class ; rdfs:subClassOf :Analytical_component . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#B-factor :B-factor rdf:type owl:Class ; rdfs:subClassOf :Experimental_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Biological_component :Biological_component rdf:type owl:Class ; rdfs:subClassOf :Object . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Biophysical_property :Biophysical_property rdf:type owl:Class ; rdfs:subClassOf :Property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Black :Black rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Blue :Blue rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Cartoon :Cartoon rdf:type owl:Class ; owl:equivalentClass :Secondary_structure ; rdfs:subClassOf :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Cation :Cation rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty :hasCharge ; owl:allValuesFrom :Positive ] ; rdfs:subClassOf :Ion . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Chain :Chain rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty :is_composed_of ; owl:onClass :Residue ; owl:minQualifiedCardinality "1"^^xsd:nonNegativeInteger ] , [ rdf:type owl:Restriction ; owl:onProperty :is_composed_of ; owl:allValuesFrom :Residue ] ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Charge :Charge rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( :Negative :Neutral :Positive ) ] ; rdfs:subClassOf :Biophysical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Color :Color rdf:type owl:Class ; rdfs:subClassOf :Action , [ rdf:type owl:Restriction ; owl:onProperty :require ; owl:someValuesFrom :Colors ] . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Colors :Colors rdf:type owl:Class ; rdfs:subClassOf :Visual_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Cyan :Cyan rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Cytosine :Cytosine rdf:type owl:Class ; rdfs:subClassOf :Nucleotid . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#DNA :DNA rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty :is_composed_of ; owl:allValuesFrom :Nucleotid ] ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Experimental_property :Experimental_property rdf:type owl:Class ; rdfs:subClassOf :Property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Geometrical_property :Geometrical_property rdf:type owl:Class ; rdfs:subClassOf :Property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Graphic :Graphic rdf:type owl:Class ; rdfs:subClassOf :Analytical_component . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Green :Green rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Guanine :Guanine rdf:type owl:Class ; rdfs:subClassOf :Nucleotid . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Hide :Hide rdf:type owl:Class ; rdfs:subClassOf :Action , [ rdf:type owl:Restriction ; owl:onProperty :require ; owl:someValuesFrom :Visual_representation ] . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Highlight :Highlight rdf:type owl:Class ; rdfs:subClassOf :Action . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#HistidineP :HistidineP rdf:type owl:Class ; rdfs:label "HistidineP" ; owl:equivalentClass :his ; rdfs:subClassOf :AminoAcid , :Aromatic , :Hydrophilic , :Large , :Polar , :Positive ; :shortName "hsp"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Histogram :Histogram rdf:type owl:Class ; rdfs:subClassOf :Graphic . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Hydrophilic :Hydrophilic rdf:type owl:Class ; rdfs:subClassOf :Hydrophobicity ; owl:disjointWith :Hydrophobic . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Hydrophobic :Hydrophobic rdf:type owl:Class ; rdfs:subClassOf :Hydrophobicity . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Hydrophobicity :Hydrophobicity rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( :Hydrophilic :Hydrophobic ) ] ; rdfs:subClassOf :Biophysical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Identifier :Identifier rdf:type owl:Class ; rdfs:subClassOf :Attribute . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Ion :Ion rdf:type owl:Class ; rdfs:subClassOf :Atom . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Large :Large rdf:type owl:Class ; rdfs:subClassOf :Size ; owl:disjointWith :Small , :Tiny . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Ligand :Ligand rdf:type owl:Class ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Line_plot :Line_plot rdf:type owl:Class ; rdfs:subClassOf :Graphic . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Lines :Lines rdf:type owl:Class ; rdfs:subClassOf :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Magenta :Magenta rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Membrane :Membrane rdf:type owl:Class ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Model :Model rdf:type owl:Class ; owl:equivalentClass :Protein , [ rdf:type owl:Restriction ; owl:onProperty :is_composed_of ; owl:allValuesFrom :Chain ] ; rdfs:subClassOf :Molecule ; rdfs:isDefinedBy :time_frame . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Molecule :Molecule rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty :is_composed_of ; owl:someValuesFrom :Atom ] ; rdfs:subClassOf :Biological_component . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Negative :Negative rdf:type owl:Class ; rdfs:subClassOf :Charge ; owl:disjointWith :Neutral , :Positive . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Neutral :Neutral rdf:type owl:Class ; rdfs:subClassOf :Charge ; owl:disjointWith :Positive . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Non-Polar :Non-Polar rdf:type owl:Class ; rdfs:subClassOf :Polarity ; owl:disjointWith :Polar . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Nucleotid :Nucleotid rdf:type owl:Class ; rdfs:subClassOf :Residue . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Object :Object rdf:type owl:Class . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Pharmacophore :Pharmacophore rdf:type owl:Class ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Pie :Pie rdf:type owl:Class ; rdfs:subClassOf :Graphic . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Point :Point rdf:type owl:Class ; rdfs:subClassOf :Analytical_component ; rdfs:isDefinedBy :Biological_component , :Represent , :X_type , :X_value , :Y_type , :Y_value , :Z_value . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Polar :Polar rdf:type owl:Class ; rdfs:subClassOf :Polarity . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Polarity :Polarity rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( :Non-Polar :Polar ) ] ; rdfs:subClassOf :Biophysical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Position :Position rdf:type owl:Class ; rdfs:subClassOf :Geometrical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Positive :Positive rdf:type owl:Class ; rdfs:subClassOf :Charge . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Primary_structure :Primary_structure rdf:type owl:Class ; rdfs:subClassOf :Structure . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Property :Property rdf:type owl:Class . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Protein :Protein rdf:type owl:Class ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Radius :Radius rdf:type owl:Class ; rdfs:subClassOf :Biophysical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Red :Red rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#RefiningFeature :RefiningFeature rdf:type owl:Class ; rdfs:subClassOf :Biophysical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Representation :Representation rdf:type owl:Class . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Resid :Resid rdf:type owl:Class ; rdfs:subClassOf :Identifier . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Residue :Residue rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty :is_composed_of ; owl:allValuesFrom :Atom ] ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Ribbon :Ribbon rdf:type owl:Class ; rdfs:subClassOf :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Scatter_plot :Scatter_plot rdf:type owl:Class ; rdfs:subClassOf :Graphic . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Secondary_structure :Secondary_structure rdf:type owl:Class ; rdfs:subClassOf :Geometrical_property , :Structure , :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Select :Select rdf:type owl:Class ; rdfs:subClassOf :Action , [ rdf:type owl:Restriction ; owl:onProperty :require ; owl:someValuesFrom :Object ] . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Selection :Selection rdf:type owl:Class ; rdfs:subClassOf :Analytical_component . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#ShortName :ShortName rdf:type owl:Class ; rdfs:subClassOf :Identifier . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Show :Show rdf:type owl:Class ; rdfs:subClassOf :Action , [ rdf:type owl:Restriction ; owl:onProperty :require ; owl:someValuesFrom :Visual_representation ] . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#SideChainStructure :SideChainStructure rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( :Aliphatic :Aromatic ) ] ; rdfs:subClassOf :Biophysical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Size :Size rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( :Large :Small :Tiny ) ] ; rdfs:subClassOf :Biophysical_property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Small :Small rdf:type owl:Class ; rdfs:subClassOf :Size ; owl:disjointWith :Tiny . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Solvent :Solvent rdf:type owl:Class ; rdfs:subClassOf :Molecule . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Sticks :Sticks rdf:type owl:Class ; rdfs:subClassOf :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Structure :Structure rdf:type owl:Class . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Surface :Surface rdf:type owl:Class ; rdfs:subClassOf :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Tertiary_structure :Tertiary_structure rdf:type owl:Class ; rdfs:subClassOf :Structure . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Tiny :Tiny rdf:type owl:Class ; rdfs:subClassOf :Size . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Uracile :Uracile rdf:type owl:Class ; rdfs:subClassOf :Nucleotid . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Value :Value rdf:type owl:Class ; rdfs:subClassOf :Analytical_component . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#VdW :VdW rdf:type owl:Class ; rdfs:subClassOf :Visual_representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Visual_property :Visual_property rdf:type owl:Class ; rdfs:subClassOf :Property . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Visual_representation :Visual_representation rdf:type owl:Class ; rdfs:subClassOf :Representation . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Water :Water rdf:type owl:Class ; rdfs:subClassOf :Solvent . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#White :White rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#X :X rdf:type owl:Class ; rdfs:subClassOf :Axis . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Y :Y rdf:type owl:Class ; rdfs:subClassOf :Axis . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Yellow :Yellow rdf:type owl:Class ; rdfs:subClassOf :Colors . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#Z :Z rdf:type owl:Class ; rdfs:subClassOf :Axis . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#ala :ala rdf:type owl:Class ; rdfs:label "Alanine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Neutral , :Non-Polar , :Tiny ; owl:disjointWith :arg , :asn , :asp , :cys , :gln , :glu , :gly , :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "ala"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#arg :arg rdf:type owl:Class ; rdfs:label "Arginine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Large , :Polar , :Positive ; owl:disjointWith :asn , :asp , :cys , :gln , :glu , :gly , :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "arg"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#asn :asn rdf:type owl:Class ; rdfs:label "Asparagine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Neutral , :Polar , :Small ; owl:disjointWith :asp , :cys , :gln , :glu , :gly , :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; owl:versionInfo "TODO: Should this be Aliphatic?"^^xsd:string ; :shortName "asn"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#asp :asp rdf:type owl:Class ; rdfs:label "Aspartate"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Negative , :Polar , :Small ; owl:disjointWith :cys , :gln , :glu , :gly , :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; owl:versionInfo "TODO: Aspartate?"^^xsd:string ; :shortName "asp"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#cys :cys rdf:type owl:Class ; rdfs:label "Cysteine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Neutral , :Polar , :Small ; owl:disjointWith :gln , :glu , :gly , :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "cys"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#gln :gln rdf:type owl:Class ; rdfs:label "Glutamine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Large , :Neutral , :Polar ; owl:disjointWith :glu , :gly , :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "gln"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#glu :glu rdf:type owl:Class ; rdfs:label "Glutamate"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Negative , :Polar , :Small ; owl:disjointWith :gly , :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "glu"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#gly :gly rdf:type owl:Class ; rdfs:label "Glycine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Neutral , :Non-Polar , :Tiny ; owl:disjointWith :his , :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "gly"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#his :his rdf:type owl:Class ; rdfs:label "Histidine"^^xsd:string ; rdfs:subClassOf :AminoAcid , :Aromatic , :Hydrophilic , :Large , :Polar , :Positive ; owl:disjointWith :ile , :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "his"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#ile :ile rdf:type owl:Class ; rdfs:label "Isoleucine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Large , :Neutral , :Non-Polar ; owl:disjointWith :leu , :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "ile"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#leu :leu rdf:type owl:Class ; rdfs:label "Leucine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Large , :Neutral , :Non-Polar ; owl:disjointWith :lys , :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "leu"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#lys :lys rdf:type owl:Class ; rdfs:label "Lysine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Large , :Polar , :Positive ; owl:disjointWith :met , :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "lys"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#met :met rdf:type owl:Class ; rdfs:label "Methionine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Large , :Neutral , :Non-Polar ; owl:disjointWith :phe , :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "met"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#phe :phe rdf:type owl:Class ; rdfs:label "Phenylalanine"^^xsd:string ; rdfs:subClassOf :AminoAcid , :Aromatic , :Hydrophobic , :Large , :Neutral , :Non-Polar ; owl:disjointWith :pro , :ser , :thr , :trp , :tyr , :val ; :shortName "phe"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#pro :pro rdf:type owl:Class ; rdfs:label "Proline"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Neutral , :Non-Polar , :Small ; owl:disjointWith :ser , :thr , :trp , :tyr , :val ; :shortName "pro"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#ser :ser rdf:type owl:Class ; rdfs:label "Serine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Neutral , :Polar , :Tiny ; owl:disjointWith :thr , :trp , :tyr , :val ; :shortName "ser"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#thr :thr rdf:type owl:Class ; rdfs:label "Threonine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophilic , :Neutral , :Polar , :Tiny ; owl:disjointWith :trp , :tyr , :val ; :shortName "thr"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#thymine :thymine rdf:type owl:Class ; rdfs:subClassOf :Nucleotid . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#trp :trp rdf:type owl:Class ; rdfs:label "Tryptophan"^^xsd:string ; rdfs:subClassOf :AminoAcid , :Aromatic , :Hydrophobic , :Large , :Neutral , :Non-Polar ; owl:disjointWith :tyr , :val ; :shortName "trp"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#tyr :tyr rdf:type owl:Class ; rdfs:label "Tyrosine"^^xsd:string ; rdfs:subClassOf :AminoAcid , :Aromatic , :Hydrophobic , :Large , :Neutral , :Polar ; owl:disjointWith :val ; :shortName "tyr"^^xsd:string . ### http://www.semanticweb.org/trellet/ontologies/2015/0/VisualAnalytics#val :val rdf:type owl:Class ; rdfs:label "Valine"^^xsd:string ; rdfs:subClassOf :Aliphatic , :AminoAcid , :Hydrophobic , :Neutral , :Non-Polar , :Small ; :shortName "val"^^xsd:string . [ :time_frame "" ] . ### Generated by the OWL API (version 3.5.0) http://owlapi.sourceforge.net