Space Life Sciences Ontology
type: Ontology
version IRI: slso.owl
description: The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.
license: http://creativecommons.org/licenses/by/3.0/
version info: 2024-05-17

BFO OWL specification label
type: AnnotationProperty
definition: Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
IAO_0000232: Really of interest to developers only

is_identity_criteria
type: AnnotationProperty
definition: Used to annotation axioms that define identity criteria for instances of a class.

editor preferred label
type: AnnotationProperty
editor preferred label: editor preferred label
editor preferred label: editor preferred term
editor preferred label: editor preferred term~editor preferred label
definition: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: editor preferred term
label: editor preferred term~editor preferred label

example of usage
type: AnnotationProperty
editor preferred label: example of usage
IAO_0000114: IAO_0000122
definition: A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not.
definition: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source: IAO

definition
type: AnnotationProperty
editor preferred label: definition
editor preferred label: textual definition
IAO_0000114: IAO_0000122
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
editor note: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: textual definition

editor note
type: AnnotationProperty
editor preferred label: editor note
IAO_0000114: IAO_0000122
definition: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obofoundry.org/obo/obi>

term editor
type: AnnotationProperty
editor preferred label: term editor
IAO_0000114: IAO_0000122
definition: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

alternative term
type: AnnotationProperty
editor preferred label: alternative label
editor preferred label: alternative term
IAO_0000114: IAO_0000125
definition: A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like.
definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
term editor: OBO Operations committee
term editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
comment: Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).
label: alternative label

definition source
type: AnnotationProperty
editor preferred label: definition source
IAO_0000114: IAO_0000122
definition: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
term editor: PERSON:Daniel Schober
definition source: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

is a defining property chain axiom
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

Label in NLSP
type: AnnotationProperty
definition: Defines the label for the property as shown in NASA Life Sciences Portal

SLIMS Label
type: AnnotationProperty
definition: Defines the label for the property in ARC SLIMS database

Axiom
annotated source: SLIMS Label
annotated property: definition
annotated target: Defines the label for the property in ARC SLIMS database
definition source: Object property

NLSP field name
type: AnnotationProperty
definition: Defines the field label propery in NASA Life Sciences Portal

Contributor
type: AnnotationProperty
description: Examples of a Contributor include a person, an organisation, or a service. Typically, the name of a Contributor should be used to indicate the entity.
Resource Type: element
Has Version: contributor-004
issued: 1999-07-02
Modified: 2002-10-04
comment: An entity responsible for making contributions to the content of the resource.

Coverage
type: AnnotationProperty
description: Coverage will typically include spatial location (a place name or geographic coordinates), temporal period (a period label, date, or date range) or jurisdiction (such as a named administrative entity). Recommended best practice is to select a value from a controlled vocabulary (for example, the Thesaurus of Geographic Names [TGN]) and that, where appropriate, named places or time periods be used in preference to numeric identifiers such as sets of coordinates or date ranges.
Resource Type: element
Has Version: coverage-004
issued: 1999-07-02
Modified: 2002-10-04
comment: The extent or scope of the content of the resource.

Creator
type: AnnotationProperty
description: Examples of a Creator include a person, an organisation, or a service. Typically, the name of a Creator should be used to indicate the entity.
Resource Type: element
Has Version: creator-004
issued: 1999-07-02
Modified: 2002-10-04
comment: An entity primarily responsible for making the content of the resource.

Date
type: AnnotationProperty
description: Typically, Date will be associated with the creation or availability of the resource. Recommended best practice for encoding the date value is defined in a profile of ISO 8601 [W3CDTF] and follows the YYYY-MM-DD format.
Resource Type: element
Has Version: date-004
issued: 1999-07-02
Modified: 2002-10-04
comment: A date associated with an event in the life cycle of the resource.

Description
type: AnnotationProperty
description: Description may include but is not limited to: an abstract, table of contents, reference to a graphical representation of content or a free-text account of the content.
Resource Type: element
Has Version: description-004
issued: 1999-07-02
Modified: 2002-10-04
comment: An account of the content of the resource.

Format
type: AnnotationProperty
description: Typically, Format may include the media-type or dimensions of the resource. Format may be used to determine the software, hardware or other equipment needed to display or operate the resource. Examples of dimensions include size and duration. Recommended best practice is to select a value from a controlled vocabulary (for example, the list of Internet Media Types [MIME] defining computer media formats).
Resource Type: element
Has Version: format-004
issued: 1999-07-02
Modified: 2002-10-04
comment: The physical or digital manifestation of the resource.

Resource Identifier
type: AnnotationProperty
description: Recommended best practice is to identify the resource by means of a string or number conforming to a formal identification system. Example formal identification systems include the Uniform Resource Identifier (URI) (including the Uniform Resource Locator (URL)), the Digital Object Identifier (DOI) and the International Standard Book Number (ISBN).
Resource Type: element
Has Version: identifier-004
issued: 1999-07-02
Modified: 2002-10-04
comment: An unambiguous reference to the resource within a given context.

Language
type: AnnotationProperty
description: Recommended best practice is to use RFC 3066 [RFC3066], which, in conjunction with ISO 639 [ISO639], defines two- and three-letter primary language tags with optional subtags. Examples include "en" or "eng" for English, "akk" for Akkadian, and "en-GB" for English used in the United Kingdom.
Resource Type: element
Has Version: language-005
issued: 1999-07-02
Modified: 2002-10-04
comment: A language of the intellectual content of the resource.

Publisher
type: AnnotationProperty
description: Examples of a Publisher include a person, an organisation, or a service. Typically, the name of a Publisher should be used to indicate the entity.
Resource Type: element
Has Version: publisher-004
issued: 1999-07-02
Modified: 2002-10-04
comment: An entity responsible for making the resource available

Relation
type: AnnotationProperty
description: Recommended best practice is to reference the resource by means of a string or number conforming to a formal identification system.
Resource Type: element
Has Version: relation-004
issued: 1999-07-02
Modified: 2002-10-04
comment: A reference to a related resource.

Rights Management
type: AnnotationProperty
description: Typically, a Rights element will contain a rights management statement for the resource, or reference a service providing such information. Rights information often encompasses Intellectual Property Rights (IPR), Copyright, and various Property Rights. If the Rights element is absent, no assumptions can be made about the status of these and other rights with respect to the resource.
Resource Type: element
Has Version: rights-004
issued: 1999-07-02
Modified: 2002-10-04
comment: Information about rights held in and over the resource.

Source
type: AnnotationProperty
description: The present resource may be derived from the Source resource in whole or in part. Recommended best practice is to reference the resource by means of a string or number conforming to a formal identification system.
Resource Type: element
Has Version: source-004
issued: 1999-07-02
Modified: 2002-10-04
comment: A reference to a resource from which the present resource is derived.

Subject and Keywords
type: AnnotationProperty
description: Typically, a Subject will be expressed as keywords, key phrases or classification codes that describe a topic of the resource. Recommended best practice is to select a value from a controlled vocabulary or formal classification scheme.
Resource Type: element
Has Version: subject-004
issued: 1999-07-02
Modified: 2002-10-04
comment: The topic of the content of the resource.

Title
type: AnnotationProperty
description: Typically, a Title will be a name by which the resource is formally known.
Resource Type: element
Has Version: title-004
issued: 1999-07-02
Modified: 2002-10-04
comment: A name given to the resource.

Resource Type
type: AnnotationProperty
description: Type includes terms describing general categories, functions, genres, or aggregation levels for content. Recommended best practice is to select a value from a controlled vocabulary (for example, the DCMI Type Vocabulary [DCMITYPE]). To describe the physical or digital manifestation of the resource, use the Format element.
Resource Type: element
Has Version: type-004
issued: 1999-07-02
Modified: 2002-10-04
comment: The nature or genre of the content of the resource.

Abstract
type: AnnotationProperty
Resource Type: element-refinement
Has Version: abstract-002
issued: 2000-07-11
Modified: 2002-06-15
comment: A summary of the content of the resource.

Access Rights
type: AnnotationProperty
description: Access Rights may include information regarding access or restrictions based on privacy, security or other regulations.
Resource Type: element-refinement
Has Version: accessRights-001
issued: 2003-02-15
comment: Information about who can access the resource or an indication of its security status.

Alternative
type: AnnotationProperty
description: This qualifier can include Title abbreviations as well as translations.
Resource Type: element-refinement
Has Version: alternative-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Any form of the title used as a substitute or alternative to the formal title of the resource.

Audience
type: AnnotationProperty
description: A class of entity may be determined by the creator or the publisher or by a third party.
Resource Type: element
Has Version: audience-002
issued: 2001-05-21
Modified: 2002-06-15
comment: A class of entity for whom the resource is intended or useful.

Available
type: AnnotationProperty
Resource Type: element-refinement
Has Version: available-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Date (often a range) that the resource will become or did become available.

Bibliographic Citation
type: AnnotationProperty
description: Recommended practice is to include sufficient bibliographic detail to identify the resource as unambiguously as possible, whether or not the citation is in a standard form.
Resource Type: element-refinement
Has Version: bibliographicCitation-001
issued: 2003-02-15
comment: A bibliographic reference for the resource.

Conforms To
type: AnnotationProperty
Resource Type: element-refinement
Has Version: conformsTo-002
issued: 2001-05-21
Modified: 2002-06-15
comment: A reference to an established standard to which the resource conforms.

Created
type: AnnotationProperty
Resource Type: element-refinement
Has Version: created-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Date of creation of the resource.

Date Accepted
type: AnnotationProperty
Resource Type: element-refinement
Has Version: dateAccepted-001
issued: 2002-07-13
comment: Date of acceptance of the resource (e.g. of thesis by university department, of article by journal, etc.).

Date Copyrighted
type: AnnotationProperty
Resource Type: element-refinement
Has Version: dateCopyrighted-001
issued: 2002-07-13
comment: Date of a statement of copyright.

Date Submitted
type: AnnotationProperty
Resource Type: element-refinement
Has Version: dateSubmitted-001
issued: 2002-07-13
comment: Date of submission of the resource (e.g. thesis, articles, etc.).

description
type: AnnotationProperty

Audience Education Level
type: AnnotationProperty
Resource Type: element-refinement
Has Version: educationLevel-001
issued: 2002-07-13
comment: A general statement describing the education or training context. Alternatively, a more specific statement of the location of the audience in terms of its progression through an education or training context.

Extent
type: AnnotationProperty
Resource Type: element-refinement
Has Version: extent-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The size or duration of the resource.

Has Format
type: AnnotationProperty
Resource Type: element-refinement
Has Version: hasFormat-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource pre-existed the referenced resource, which is essentially the same intellectual content presented in another format.

Has Part
type: AnnotationProperty
Resource Type: element-refinement
Has Version: hasPart-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource includes the referenced resource either physically or logically.

Has Version
type: AnnotationProperty
Resource Type: element-refinement
Has Version: hasVersion-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource has a version, edition, or adaptation, namely, the referenced resource.

Is Format Of
type: AnnotationProperty
Resource Type: element-refinement
Has Version: isFormatOf-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource is the same intellectual content of the referenced resource, but presented in another format.

Is Part Of
type: AnnotationProperty
Resource Type: element-refinement
Has Version: isPartOf-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource is a physical or logical part of the referenced resource.

Is Referenced By
type: AnnotationProperty
Resource Type: element-refinement
Has Version: isReferencedBy-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource is referenced, cited, or otherwise pointed to by the referenced resource.

Is Replaced By
type: AnnotationProperty
Resource Type: element-refinement
Has Version: isReplacedBy-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource is supplanted, displaced, or superseded by the referenced resource.

Is Required By
type: AnnotationProperty
Resource Type: element-refinement
Has Version: isRequiredBy-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource is required by the referenced resource, either physically or logically.

Is Version Of
type: AnnotationProperty
Resource Type: element-refinement
Has Version: isVersionOf-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource is a version, edition, or adaptation of the referenced resource. Changes in version imply substantive changes in content rather than differences in format.

Issued
type: AnnotationProperty
Resource Type: element-refinement
Has Version: issued-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Date of formal issuance (e.g., publication) of the resource.

license
type: AnnotationProperty
term editor: Mark Miller
date: 2018-05-11T13:47:29Z

Mediator
type: AnnotationProperty
description: The audiences for a resource are of two basic classes: (1) an ultimate beneficiary of the resource, and (2) frequently, an entity that mediates access to the resource. The mediator element refinement represents the second of these two classes.
Resource Type: element-refinement
Has Version: mediator-002
issued: 2001-05-21
Modified: 2002-07-13
comment: A class of entity that mediates access to the resource and for whom the resource is intended or useful.

Medium
type: AnnotationProperty
Resource Type: element-refinement
Has Version: medium-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The material or physical carrier of the resource.

Modified
type: AnnotationProperty
Resource Type: element-refinement
Has Version: modified-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Date on which the resource was changed.

References
type: AnnotationProperty
Resource Type: element-refinement
Has Version: references-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource references, cites, or otherwise points to the referenced resource.

Replaces
type: AnnotationProperty
Resource Type: element-refinement
Has Version: replaces-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource supplants, displaces, or supersedes the referenced resource.

Requires
type: AnnotationProperty
Resource Type: element-refinement
Has Version: requires-002
issued: 2000-07-11
Modified: 2002-06-15
comment: The described resource requires the referenced resource to support its function, delivery, or coherence of content.

Spatial
type: AnnotationProperty
Resource Type: element-refinement
Has Version: spatial-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Spatial characteristics of the intellectual content of the resoure.

Table Of Contents
type: AnnotationProperty
Resource Type: element-refinement
Has Version: tableOfContents-002
issued: 2000-07-11
Modified: 2002-06-15
comment: A list of subunits of the content of the resource.

Temporal
type: AnnotationProperty
Resource Type: element-refinement
Has Version: temporal-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Temporal characteristics of the intellectual content of the resource.

title
type: AnnotationProperty

Valid
type: AnnotationProperty
Resource Type: element-refinement
Has Version: valid-002
issued: 2000-07-11
Modified: 2002-06-15
comment: Date (often a range) of validity of a resource.

has_related_synonym
type: AnnotationProperty

label
type: AnnotationProperty
editor preferred label: label

homepage
type: AnnotationProperty
comment: This axiom needed so that Protege loads DCAT2 without errors.

is part of
type: ObjectProperty
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
editor preferred label: is part of
example of usage: my brain is part of my body (continuant parthood, two material entities)
example of usage: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
example of usage: this day is part of this year (occurrent parthood)
definition: For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)
definition: a core relation that holds between a part and its whole
editor note: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
alternative term: part_of
RO_0001900: RO_0001901
RO_0040042: continuant
RO_0040042: occurrent
RO_0040042: independent continuant
RO_0040042: realizable
RO_0040042: quality
RO_0040042: specifically dependent continuant
RO_0040042: generically dependent continuant
has db xref: BFO:0000050
has OBO namespace: external
has OBO namespace: source
id: part_of
in subset: valid for go annotation extension
in subset: valid for go gp2term
in subset: valid for go ontology
in subset: valid for gocam
shorthand: part_of
label: part of

Axiom
annotated source: is part of
annotated property: definition
annotated target: For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)
has db xref: PMID:15892874

has part
type: ObjectProperty
sub property of: overlaps
type: TransitiveProperty
editor preferred label: has part
example of usage: my body has part my brain (continuant parthood, two material entities)
example of usage: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
example of usage: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
editor note: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
alternative term: has_part
RO_0001900: RO_0001901
has db xref: BFO:0000051
has OBO namespace: chebi_ontology
has OBO namespace: external
has OBO namespace: source
id: has_part
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
is cyclic: false
shorthand: has_part
label: has_part

realized in
type: ObjectProperty
inverse of: realizes
domain: realizable
range: process
editor preferred label: realized in
example of usage: this disease is realized in this disease course
example of usage: this fragility is realized in this shattering
example of usage: this investigator role is realized in this investigation
alternative term: is realized by
alternative term: realized_in
IAO_0000600: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

realizes
type: ObjectProperty
domain: process
range: realizable
editor preferred label: realizes
example of usage: this disease course realizes this disease
example of usage: this investigation realizes this investigator role
example of usage: this shattering realizes this fragility
IAO_0000600: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

has participant
type: ObjectProperty
id: BFO:0000057

preceded by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: is part of
editor preferred label: preceded by
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
editor note: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
alternative term: is preceded by
alternative term: preceded_by
Source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
in subset: ro-eco

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: is part of
editor preferred label: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
in subset: ro-eco

occurs in
type: ObjectProperty
inverse of: contains process
domain: occurrent
range: independent continuant
property chain axiom: is part of
editor preferred label: occurs in
definition: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
alternative term: occurs_in
alternative term: unfolds in
alternative term: unfolds_in
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

contains process
type: ObjectProperty
editor preferred label: site of
definition: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

partially_surrounded_by
type: ObjectProperty
example of usage: A duck swimming in a pond is partially surrounded by air and partially surrounded by water.
definition: x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x
comment: Definition modified from 'surrounded by'.

derives from part of
type: ObjectProperty
definition: A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist through the separation or transformation of a part of the old entity, and the new entity inherits a significant portion of the matter belonging to that part of the old entity.

has increased levels of
type: ObjectProperty
sub property of: has component
definition: A has part relationship between a whole and a part, where the number of parts present in the whole is higher than in comparable entities.
comment: This relation is present in ENVO to support compositional classes such as "X-enriched soil". These will later be formalized, and a different relation from RO may be chosen.

results in expansion of
type: ObjectProperty
example of usage: Afforestation results in the expansion of a forest.
definition: A process, p, results in the expansion of a material entity, m, if the spatial extent of m is increased as a result of participating in p.

generates
type: ObjectProperty
definition: A relation between a process and a disposition such that the existence of the disposition is caused by the execution of the process.
editor note: Consider ceding to RO
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:58:13Z

is_genotype_of
type: ObjectProperty
inverse of: has_genotype

has_genotype
type: ObjectProperty
domain: Class
  union of: has_genotype
  union of: Restriction
    on property: is part of
    some values from: has_genotype
definition: A relationship that holds between a biological entity and some level of genetic variation present in its genome.
editor note: This relation aims to be equally as broad/inclusive as RO:0002200 ! has_phenotype.
comment: The biological entity can be an organism, a group of organism that share common genotype, or organism-derived entities such as cell lines or biospecimens. The genotype can be any of the various flavors of genotypes/allelotypes defined in GENO (intrinsic genotype, extrinsic genotype, effective genotype), or any genetic variation component of a genotype including variant alleles or sequence alterations.

has_sequence
type: ObjectProperty
inverse of: is_sequence_of
range: biological sequence
definition: A relationship between an entity that carries a sequence (e.g. a sequence feature or collection), and the sequence it bears.
alternative term: has_sequence_component
alternative term: has_state
has db xref: VMC:state
comment: 'Sequence' in the context of GENO is an abstract entity representing an ordered collection of monomeric units as carried in a biological macromolecule.

is_sequence_of
type: ObjectProperty
domain: biological sequence

is_subject_of
type: ObjectProperty
inverse of: is about

has_genotype
type: ObjectProperty
type: Class
subclass of: IAO_0000030
subclass of: Restriction
  on property: denotes
  some values from: Class
    union of: genomic feature set
    union of: qualified genomic feature set
definition: A specification of the genetic state of an organism, whether complete (defined over the whole genome) or incomplete (defined over a subset of the genome). Genotypes typically describe this genetic state as a diff between some variant component and a canonical reference.
editor note: As information artifacts, genotypes specify the state of a genome be defining a diff between some canonical reference and a variant or alternate sequence that replaces the corresponding portion of the reference. We can consider a genotype then as a collection of these reference and variant features, along with some rule for operating on them and resolve a final single sequence. This is valid ontologically because we commit only to sequence features being GDCs - which allows for their concretization in either biological or informational patterns. Accordingly, a particular gene allele, such as shh<tbx292>, can be part of a genome in a biological sense and part of a genotype in an informational sense. This idea underpins the 'genotype partonomy' at the core of the GENO model that decomposes a complete genotype into its more fundamental parts, including alleles and allele complements, as described in the comment above.
definition source: Core definition above adapted from the GA4GH VMC data model definition here: https://docs.google.com/document/d/12E8WbQlvfZWk5NrxwLytmympPby6vsv60RxCeD5wc1E/edit#heading=h.4e32jj4jtmsl (retrieved 2018-04-09). Note however that the VMC genotype concept likely is not intended to cover 'effective' and 'extrinsic' genotype concepts defined in GENO.
comment: 1. Scope of 'Genetic State': 'Genetic state' is considered quite broadly in GENO to describe two general kinds of 'states'. First, is traditional notion of 'allelic state' - defined as the complement of alleles present at a particular location or locations in a genome (i.e. across all homologous chromosomes containing this location). Here, a genotype can describe allelic state at a specific locus in a genome (an 'allelic genotype'), or describe the allelic state across the entire genome ('genomic genotype'). Second, this concept can also describe states of genomic features 'extrinsic' to their intrinsic sequence, such as the expression status of a gene as a result of being specifically targeted by experimental interventions such as RNAi, morpholinos, or CRISPRs. 2. Genotype Subtypes: In GENO, we use the term 'intrinsic' for genotypes describing variation in genomic sequence, and 'extrinsic' for genotypes describing variation in gene expression (e.g. resulting from the targeted experimental knock-down or over-expression of endogenous genes). We use the term 'effective genotype' to describe the total intrinsic and extrinsic variation in a cell or organism at the time a phenotypic assessment is performed. Two more precise conccepts are subsumed by the notion of an 'intrinsic genotype': (1) 'allelic genotypes', which specify allelic state at a single genomic location; and (2) 'genomic genotypes', which specify allelic state across an entire genome. In both cases, allelic state is typically specified in terms of a differential between a reference and a set of 1 or more known variant features. 3. The Genotype Partonomy: 'Genomic genotypes' describing sequence variation across an entire genome are 'decomposed' in GENO into a partonomy of more granular levels of variation. These levels are defined to be meaningful to biologists in their attempts to relate genetic variation to phenotypic features. They include 'genomic variation complement' (GVC), 'variant single locus compl…
label: genotype

has_qualifier
type: ObjectProperty
definition: A relation used to describe a context or conditions that define and/or identify an entity.
editor note: Used in Monarch Data to link associations to qualifying contexts (e.g. environments or developmental stages) where the association applies. For example, a qualifying environment represents a context where genotype-phenotype associations apply - where the environment is an identity criteria for the association. Used in GENO to describe physical context of materialized sequence features that represent identifying criteria for instances of qualified sequence features.
alternative term: has_qualifying_context

has_sequence_feature
type: ObjectProperty
domain: Class
  union of: qualified sequence feature
  union of: qualified sequence feature set
range: SO_0000110
definition: A relation linking a qualified sequence feature to its component sequence feature.
alternative term: has_sequence_feature_component
comment: In GENO we define three levels of sequence artifacts: (1) biological sequences, (2) sequence features, and (3) qualified sequence features. The identify criteria for a 'biological sequence' include only its inherent sequence (the ordered string of units that comprise it). The identity criteria for a 'sequence feature' include its sequence and position (where it resides - i.e. its location based on how it maps to a reference or standard) The identity criteria for a 'qualified sequence feature' include its component sequence feature (defined by its sequence and position), and the material context of its bearer in a cell or organism. This context can include direct epigenetic modification, or being targeted by gene knockdown reagents such as morpholinos or RNAi, or being transiently overexpressed from a transgenic construct in a cell or organism.

has_location
type: ObjectProperty
domain: SO_0000110
range: sequence feature location
definition: A relation linking a sequence feature to the location it occupies on some reference sequence.
alternative term: occupies

has measurement unit label
type: ObjectProperty
sub property of: has part
type: FunctionalProperty
range: IAO_0000003

is about
type: ObjectProperty
domain: IAO_0000030
example of usage: This document is about information artifacts and their representations
IAO_0000114: IAO_0000125
definition: A (currently) primitive relation that relates an information artifact to an entity.
definition: is_about is a (currently) primitive relation that relates an information artifact to an entity.
editor note: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
term editor: person:Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

denotes
type: ObjectProperty
sub property of: is about
definition: Denotes is a primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically
editor note: Consdier if this is the best relation for linking genotypes to the genomic entities they specify. We could use the more generic 'is about', or define a new 'specifies' relation that holds between ICEs and something it specifies the nature or creation of.

is quality measurement of
type: ObjectProperty
sub property of: is about
inverse of: is quality measured as
domain: IAO_0000109
range: quality
definition: m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q
editor note: 8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later
editor note: From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important] This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail. Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details. -- From the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009] unit of measure is a quality, e.g. the length of a ruler. [We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label] [Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory] a represents b means either a denotes b or a describes describe: a describes b means a is about b and a allows an inference of at least one quality of b We have had a long discussion about denotes versus describes.
editor note: From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully. a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality.
editor note: From the second meeting on IAO: An attempt at defining assay using Barry's "reliability" wording assay: process and has_input some material entity and has_output some information content entity and which is such that instances of this process type reliably generate outputs that describes the input.
editor note: This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail. Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
term editor: Alan Ruttenberg

is quality measured as
type: ObjectProperty
IAO_0000114: IAO_0000120
definition: inverse of the relation of is quality measurement of
editor note: 2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship
term editor: Person:Alan Ruttenberg

owns
type: ObjectProperty
sub property of: topObjectProperty
inverse of: is owned by
type: AsymmetricProperty
domain: Class
  union of: NCBITaxon 9606
  union of: OBI_0000245
  union of: OMRSE_00000023
  union of: OMRSE_00000033
range: Class
  union of: material entity
  union of: IAO_0000030
term editor: Mathias Brochhausen
IAO_0000600: This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal.
Source: Reinach, A. Sämtliche Werke. Texkritische Ausgabe, München: Philosophia Verlag, 1989, p.189-204.

is owned by
type: ObjectProperty
type: AsymmetricProperty
domain: Class
  union of: material entity
  union of: IAO_0000030
range: Class
  union of: NCBITaxon 9606
  union of: OBI_0000245
  union of: OMRSE_00000023
  union of: OMRSE_00000033
definition: a is owned by b if b has complete power over a. All rights and obligations of ownership are grounded in this (primitive) relation. The claims and obligations of ownership can be partially transferred to a third party by the owner, b.
definition source: Reinach, A. Sämtliche Werke. Texkritische Ausgabe, München: Philosophia Verlag, 1989, p.189-204.

is_supported_by_data
type: ObjectProperty
domain: OBI_0001909
range: IAO_0000027
editor preferred label: is_supported_by_data
example of usage: The relation between the conclusion "Gene tpbA is involved in EPS production" and the data items produced using two sets of organisms, one being a tpbA knockout, the other being tpbA wildtype tested in polysacharide production assays and analyzed using an ANOVA.
IAO_0000114: IAO_0000122
definition: The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process
term editor: OBI
definition source: OBI
definition source: Philly 2011 workshop
IAO_0000412: obi.owl

has_specified_input
type: ObjectProperty
equivalent property:
  inverse of: is_specified_input_of
sub property of: has participant
inverse of: is_specified_input_of
domain: OBI_0000011
editor preferred label: has_specified_input
example of usage: see is_input_of example_of_usage
IAO_0000114: IAO_0000122
definition: The inverse property of is_specified_input_of
editor note: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
term editor: PERSON: Alan Ruttenberg
term editor: PERSON: Bjoern Peters
term editor: PERSON: Larry Hunter
term editor: PERSON: Melanie Coutot
IAO_0000412: obi.owl

is_specified_input_of
type: ObjectProperty
sub property of: participates in
range: OBI_0000011
editor preferred label: is_specified_input_of
example of usage: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
IAO_0000114: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
term editor: Alan Ruttenberg
term editor: PERSON:Bjoern Peters
IAO_0000412: obi.owl

has_specified_output
type: ObjectProperty
equivalent property:
  inverse of: is_specified_output_of
sub property of: has participant
inverse of: is_specified_output_of
domain: OBI_0000011
editor preferred label: has_specified_output
IAO_0000114: IAO_0000122
definition: The inverse property of is_specified_output_of
term editor: PERSON: Alan Ruttenberg
term editor: PERSON: Bjoern Peters
term editor: PERSON: Larry Hunter
term editor: PERSON: Melanie Courtot
IAO_0000412: obi.owl

is_specified_output_of
type: ObjectProperty
sub property of: participates in
range: OBI_0000011
editor preferred label: is_specified_output_of
IAO_0000114: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
term editor: Alan Ruttenberg
term editor: PERSON:Bjoern Peters
IAO_0000412: obi.owl

achieves_planned_objective
type: ObjectProperty
inverse of: objective_achieved_by
domain: OBI_0000011
range: IAO_0000005
editor preferred label: achieves_planned_objective
example of usage: A cell sorting process achieves the objective specification 'material separation objective'
IAO_0000114: IAO_0000120
definition: This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
term editor: BP, AR, PPPB branch
definition source: PPPB branch derived
IAO_0000232: modified according to email thread from 1/23/09 in accordince with DT and PPPB branch
IAO_0000412: obi.owl

objective_achieved_by
type: ObjectProperty
domain: IAO_0000005
range: OBI_0000011
editor preferred label: objective_achieved_by
IAO_0000114: IAO_0000122
definition: This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
term editor: OBI
definition source: OBI
IAO_0000412: obi.owl

has value specification
type: ObjectProperty
sub property of: has part
domain: IAO_0000030
range: OBI_0001933
editor preferred label: has value specification
IAO_0000114: IAO_0000120
definition: A relation between an information content entity and a value specification that specifies its value.
term editor: PERSON: James A. Overton
definition source: OBI

is-aggregate-of
type: ObjectProperty
sub property of: topObjectProperty
IAO_0000231: BFO relation takes precedence.
IAO_0000412: omrse.owl
comment: We anticipate BFO 2.0 including and defining this relation. When it does, we will obsolete this property and declare it equivalent to the BFO 2.0 relation.
deprecated: true

characteristic of
type: ObjectProperty
sub property of: characteristic of part of
inverse of: bearer of
type: FunctionalProperty
editor preferred label: inheres in
example of usage: this fragility inheres in this vase
example of usage: this fragility is a characteristic of this vase
example of usage: this red color inheres in this apple
example of usage: this red color is a characteristic of this apple
definition: a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
definition: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
editor note: A dependent inheres in its bearer at all times for which the dependent exists.
alternative term: inheres_in
RO_0001900: RO_0001901
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
label: inheres in

bearer of
type: ObjectProperty
type: InverseFunctionalProperty
range: specifically dependent continuant
editor preferred label: bearer of
example of usage: this apple is bearer of this red color
example of usage: this vase is bearer of this fragility
definition: Inverse of characteristic_of
definition: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
editor note: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
alternative term: bearer_of
alternative term: is bearer of
RO_0001900: RO_0001901
label: has characteristic

participates in
type: ObjectProperty
inverse of: has participant
domain: continuant
range: occurrent
editor preferred label: participates in
example of usage: this blood clot participates in this blood coagulation
example of usage: this input material (or this output material) participates in this process
example of usage: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
alternative term: participates_in

has participant
type: ObjectProperty
domain: occurrent
range: continuant
property chain axiom: has part
property chain axiom: realizes
property chain axiom: characteristic of
editor preferred label: has participant
example of usage: this blood coagulation has participant this blood clot
example of usage: this investigation has participant this investigator
example of usage: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
editor note: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
alternative term: has_participant
Source: http://www.obofoundry.org/ro/#OBO_REL:has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
inverse of: concretizes
domain: generically dependent continuant
range: specifically dependent continuant
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.

concretizes
type: ObjectProperty
domain: specifically dependent continuant
range: generically dependent continuant
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.

function of
type: ObjectProperty
sub property of: characteristic of
inverse of: has function
domain: function
example of usage: this catalysis function is a function of this enzyme
definition: a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
editor note: A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
alternative term: function_of
alternative term: is function of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

quality of
type: ObjectProperty
sub property of: characteristic of
inverse of: has quality
example of usage: this red color is a quality of this apple
definition: a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
editor note: A quality inheres in its bearer at all times for which the quality exists.
alternative term: is quality of
alternative term: quality_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

role of
type: ObjectProperty
sub property of: characteristic of
inverse of: has role
example of usage: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
editor note: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
alternative term: is role of
alternative term: role_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has function
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: function
example of usage: this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
definition: a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
editor note: A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
alternative term: has_function
IAO_0000412: ro.owl

has quality
type: ObjectProperty
sub property of: bearer of
range: quality
example of usage: this apple has quality this red color
definition: a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
editor note: A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
alternative term: has_quality

has role
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: role
example of usage: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
editor note: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
alternative term: has_role
has db xref: RO:0000087
has OBO namespace: chebi_ontology
id: has_role
is cyclic: false
is transitive: false
shorthand: has_role

has disposition
type: ObjectProperty
sub property of: bearer of
inverse of: disposition of
domain: independent continuant
range: disposition
definition: a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence

disposition of
type: ObjectProperty
sub property of: characteristic of
definition: inverse of has disposition
in subset: RO_0002259
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

derives from
type: ObjectProperty
sub property of: derives from part of
sub property of: topObjectProperty
inverse of: derives into
domain: independent continuant
range: independent continuant
editor preferred label: derives from
example of usage: this cell derives from this parent cell (cell division)
example of usage: this nucleus derives from this parent nucleus (nuclear division)
IAO_0000114: IAO_0000125
definition: a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
alternative term: derives_from
IAO_0000232: This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
IAO_0000412: ro.owl
in subset: ro-eco

derives into
type: ObjectProperty
example of usage: this parent cell derives into this cell (cell division)
example of usage: this parent nucleus derives into this nucleus (nuclear division)
IAO_0000114: IAO_0000125
definition: a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
alternative term: derives_into
in subset: ro-eco

location of
type: ObjectProperty
inverse of: located in
type: TransitiveProperty
editor preferred label: is location of
example of usage: my head is the location of my brain
example of usage: this cage is the location of this rat
definition: a relation between two independent continuants, the location and the target, in which the target is entirely within the location
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
alternative term: location_of
RO_0001900: RO_0001901

contained in
type: ObjectProperty
inverse of: contains
domain: material entity
range: independent continuant
property chain axiom: located in
property chain axiom: is part of
editor preferred label: contained in
editor note: Containment is location not involving parthood, and arises only where some immaterial continuant is involved.
editor note: Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):
editor note: Intended meaning: domain: material entity range: spatial region or site (immaterial continuant)
alternative term: contained_in
RO_0001900: RO_0001901
in subset: ro-eco

contains
type: ObjectProperty
editor preferred label: contains
RO_0001900: RO_0001901
in subset: ro-eco

located in
type: ObjectProperty
type: TransitiveProperty
domain: independent continuant
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: independent continuant
range: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
property chain axiom: is part of
editor preferred label: located in
example of usage: my brain is located in my head
example of usage: this rat is located in this cage
definition: a relation between two independent continuants, the target and the location, in which the target is entirely within the location
editor note: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
alternative term: located_in
RO_0001900: RO_0001901
Source: http://www.obofoundry.org/ro/#OBO_REL:located_in
in subset: valid for go gp2term

Axiom
annotated source: located in
annotated property: domain
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

Axiom
annotated source: located in
annotated property: range
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

bounding layer of
type: ObjectProperty
sub property of: is part of
domain: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: PATO_0002124
range: material entity
definition: X outer_layer_of Y iff: . X :continuant that bearer_of some PATO:laminar . X part_of Y . exists Z :surface . X has_boundary Z . Z boundary_of Y has_boundary: http://purl.obolibrary.org/obo/RO_0002002 boundary_of: http://purl.obolibrary.org/obo/RO_0002000
term editor: David Osumi-Sutherland
in subset: ro-eco
comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.

has regulatory component activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulated by
definition: A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-05-24T09:30:46Z

has negative regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: negatively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-05-24T09:31:01Z
comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has positive regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: positively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-05-24T09:31:17Z
comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has component activity
type: ObjectProperty
sub property of: has component process
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-05-24T09:44:33Z
comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has component process
type: ObjectProperty
sub property of: has component
domain: process
range: process
definition: w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-05-24T09:49:21Z

directly regulated by
type: ObjectProperty
sub property of: regulated by
inverse of: directly regulates
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-09-17T13:52:24Z
comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
has db xref: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
has db xref: GOC:dos

directly negatively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly negatively regulates
definition: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-09-17T13:52:38Z

Axiom
annotated source: directly negatively regulated by
annotated property: definition
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
has db xref: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: directly negatively regulated by
annotated property: definition
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
has db xref: GOC:dos

directly positively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly positively regulates
definition: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-09-17T13:52:47Z

Axiom
annotated source: directly positively regulated by
annotated property: definition
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
has db xref: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: directly positively regulated by
annotated property: definition
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
has db xref: GOC:dos

has effector activity
type: ObjectProperty
sub property of: has component activity
type: FunctionalProperty
definition: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
created by: https://orcid.org/0000-0002-7073-9172
created by: dos
creation date: 2017-09-22T14:14:36Z
comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

Axiom
annotated source: has effector activity
annotated property: definition
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
has db xref: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: has effector activity
annotated property: definition
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
has db xref: GOC:dos

during which ends
type: ObjectProperty
sub property of: temporally related to
inverse of: ends during
term editor: David Osumi-Sutherland
in subset: ro-eco
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
property chain axiom: ends during
property chain axiom: preceded by
term editor: David Osumi-Sutherland
in subset: ro-eco
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately preceded by
type: ObjectProperty
sub property of: preceded by
inverse of: immediately precedes
term editor: David Osumi-Sutherland
alternative term: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

immediately precedes
type: ObjectProperty
sub property of: precedes
term editor: https://orcid.org/0000-0002-7073-9172
term editor: David Osumi-Sutherland
alternative term: ends_at_start_of
alternative term: meets
RO_0002575: precedes
in subset: ro-eco
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

ends during
type: ObjectProperty
sub property of: temporally related to
term editor: David Osumi-Sutherland
alternative term: o
alternative term: overlaps
in subset: ro-eco
comment: X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
type: SymmetricProperty
property chain axiom: is part of
property chain axiom: has part
IAO_0000114: IAO_0000125
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO_0001900: RO_0001901
in subset: valid for go annotation extension
in subset: valid for gocam
in subset: ro-eco

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: is part of
RO_0002582: true

in taxon
type: ObjectProperty
definition: x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.

spatially disjoint from
type: ObjectProperty
sub property of: mereotopologically related to
IAO_0000114: IAO_0000125
definition: A is spatially_disjoint_from B if and only if they have no parts in common
editor note: There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom.
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
IAO_0000232: Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy
IAO_0000424: BFO_0000051 exactly 0 (BFO_0000050 some ?Y)
RO_0001900: RO_0001901
in subset: ro-eco

has component
type: ObjectProperty
sub property of: has part
IAO_0000114: IAO_0000125
definition: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
editor note: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
IAO_0000232: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
RO_0001900: RO_0001901
in subset: ro-eco

develops from
type: ObjectProperty
sub property of: developmentally preceded by
inverse of: develops into
type: TransitiveProperty
domain: independent continuant
range: independent continuant
IAO_0000114: IAO_0000125
definition: x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
term editor: Chris Mungall
term editor: David Osumi-Sutherland
term editor: Melissa Haendel
term editor: Terry Meehan
comment: This is the transitive form of the develops from relation

develops into
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to develop into
sub property of: has potential to directly develop into
type: TransitiveProperty
IAO_0000114: IAO_0000125
definition: inverse of develops from
term editor: Chris Mungall
term editor: David Osumi-Sutherland
term editor: Terry Meehan
in subset: RO_0002259

directly develops from
type: ObjectProperty
sub property of: develops from
inverse of: directly develops into
IAO_0000114: IAO_0000125
definition: Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y.
term editor: Chris Mungall
term editor: David Osumi-Sutherland
term editor: has developmental precursor
definition source: FBbt
RO_0002575: develops from
comment: TODO - add child relations from DOS

directly develops into
type: ObjectProperty
sub property of: develops into
IAO_0000114: IAO_0000125
definition: inverse of directly develops from
alternative term: developmental precursor of
in subset: RO_0002259

regulates (processual)
type: ObjectProperty
sub property of: causally upstream of
inverse of: regulated by
type: TransitiveProperty
domain: process
range: process
property chain axiom: has effector activity
property chain axiom: ends with
property chain axiom: directly regulates
definition: p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q.
term editor: https://orcid.org/0000-0001-7476-6306
term editor: https://orcid.org/0000-0002-3837-8864
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
term editor: David Hill
term editor: Tanya Berardini
definition source: causal-relations
definition source: GO
IAO_0000232: Regulation precludes parthood; the regulatory process may not be within the regulated process.
IAO_0000589: regulates (processual)
IAO_0000600: false
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
label: regulates

negatively regulates
type: ObjectProperty
sub property of: regulates (processual)
sub property of: causally upstream of, negative effect
inverse of: negatively regulated by
property chain axiom: ends with
definition: p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: negatively regulates (process to process)
RO_0004050: regulates (processual)
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

positively regulates
type: ObjectProperty
sub property of: regulates (processual)
sub property of: causally upstream of, positive effect
inverse of: positively regulated by
type: TransitiveProperty
property chain axiom: negatively regulates
property chain axiom: ends with
definition: p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: positively regulates (process to process)
RO_0004049: regulates (processual)
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

capable of
type: ObjectProperty
sub property of: capable of part of
domain: independent continuant
range: process
example of usage: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
example of usage: osteoclast SubClassOf 'capable of' some 'bone resorption'
definition: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: has function realized in
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20123131
definition source: http://www.ncbi.nlm.nih.gov/pubmed/21208450
IAO_0000232: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
in subset: ro-eco

capable of part of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: is part of
definition: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: has function in

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: is part of
RO_0002582: true

surrounded by
type: ObjectProperty
sub property of: adjacent to
inverse of: surrounds
IAO_0000114: IAO_0000125
definition: x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x
term editor: Chris Mungall
RO_0001900: RO_0001901

adjacent to
type: ObjectProperty
sub property of: spatially disjoint from
domain: independent continuant
range: independent continuant
example of usage: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
example of usage: The epidermis layer of a vertebrate is adjacent to the dermis.
example of usage: The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
example of usage: The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
IAO_0000114: IAO_0000125
definition: x adjacent to y if and only if x and y share a boundary.
editor note: This relation acts as a join point with BSPO
term editor: Chris Mungall
RO_0001900: RO_0001901
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

Axiom
annotated source: adjacent to
annotated property: example of usage
annotated target: A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.

surrounds
type: ObjectProperty
sub property of: adjacent to
IAO_0000114: IAO_0000125
definition: inverse of surrounded by
term editor: Chris Mungall
RO_0001900: RO_0001901
in subset: RO_0002259

temporally related to
type: ObjectProperty
domain: occurrent
range: occurrent
IAO_0000114: IAO_0000125
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: Allen's interval algebra
IAO_0000232: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in subset: ro-eco
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

develops from part of
type: ObjectProperty
sub property of: develops from
property chain axiom: directly develops from
property chain axiom: is part of
IAO_0000114: IAO_0000125
definition: x develops from part of y if and only if there exists some z such that x develops from z and z is part of y
term editor: Chris Mungall

develops in
type: ObjectProperty
sub property of: developmentally preceded by
domain: CARO_0000000
property chain axiom: directly develops from
property chain axiom: located in
IAO_0000114: IAO_0000125
definition: x develops_in y if x is located in y whilst x is developing
term editor: Chris Mungall
definition source: EHDAA2
definition source: Jonathan Bard, EHDAA2

ends
type: ObjectProperty
sub property of: is part of
sub property of: temporally related to
inverse of: ends with
IAO_0000114: IAO_0000125
definition: inverse of ends with
term editor: Chris Mungall
in subset: ro-eco

ends with
type: ObjectProperty
sub property of: has part
sub property of: temporally related to
type: TransitiveProperty
IAO_0000114: IAO_0000125
definition: x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
term editor: Chris Mungall
alternative term: finished by
in subset: ro-eco

has end location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: ends with
property chain axiom: occurs in
IAO_0000114: IAO_0000125
definition: x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y
term editor: Chris Mungall
alternative term: ends with process that occurs in
in subset: ro-eco

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
IAO_0000114: IAO_0000125
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: consumes
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
in subset: ro-eco

has output
type: ObjectProperty
sub property of: has participant
inverse of: output of
property chain axiom: ends with
IAO_0000114: IAO_0000125
definition: p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.
term editor: Chris Mungall
alternative term: produces
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
in subset: ro-eco

has developmental contribution from
type: ObjectProperty
sub property of: developmentally preceded by
inverse of: developmentally contributes to
domain: CARO_0000000
range: CARO_0000000
property chain axiom: has part
property chain axiom: develops from
example of usage: Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]
IAO_0000114: IAO_0000125
definition: x has developmental contribution from y iff x has some part z such that z develops from y
term editor: Chris Mungall

developmentally contributes to
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to developmentally contribute to
property chain axiom: develops into
property chain axiom: is part of
IAO_0000114: IAO_0000125
definition: inverse of has developmental contribution from
term editor: Chris Mungall
in subset: RO_0002259

developmentally preceded by
type: ObjectProperty
sub property of: developmentally related to
inverse of: developmentally succeeded by
domain: continuant
range: continuant
IAO_0000114: IAO_0000125
definition: Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
editor note: false
term editor: Chris Mungall
IAO_0000232: In general you should not use this relation to make assertions - use one of the more specific relations below this one
comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from

acts upstream of
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of
example of usage: A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
definition: c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
in subset: valid for go gp2term

acts upstream of or within
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: enables
property chain axiom: causally upstream of or within
example of usage: A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
definition: c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
has_related_synonym: affects
in subset: valid for go gp2term

developmentally succeeded by
type: ObjectProperty
sub property of: has developmental potential involving
IAO_0000114: IAO_0000125
definition: Inverse of developmentally preceded by
term editor: Chris Mungall

part of developmental precursor of
type: ObjectProperty
sub property of: developmentally succeeded by
property chain axiom: is part of
property chain axiom: directly develops into
example of usage: 'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue
IAO_0000114: IAO_0000125
term editor: Chris Mungall

results in developmental progression of
type: ObjectProperty
sub property of: developmentally related to
domain: biological_process
range: CARO_0000000
IAO_0000114: IAO_0000125
definition: p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
editor note: This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint.
term editor: Chris Mungall

results in formation of
type: ObjectProperty
sub property of: has output
sub property of: results in developmental progression of
inverse of: formed as result of
example of usage: an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.
example of usage: every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)
IAO_0000114: IAO_0000125
term editor: Chris Mungall
definition source: GOC:mtg_berkeley_2013
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

has habitat
type: ObjectProperty
sub property of: ecologically related to
domain: CARO_0001010
range: environmental system
example of usage: Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat' where 'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview
IAO_0000114: IAO_0000428
definition: x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs.
term editor: Pier Buttigieg
alternative term: adapted for living in
in subset: ro-eco
comment: A population of xs will possess adaptations (either evolved naturally or via artifical selection) which permit it to exist and grow in y.

causally upstream of, positive effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, positive effect
definition: p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.
RO_0004049: causally upstream of
creator: https://orcid.org/0000-0002-6601-2165
creator: cjm
in subset: valid for go annotation extension
in subset: valid for gocam
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

causally upstream of, negative effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, negative effect
definition: p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.
RO_0004050: causally upstream of
creator: https://orcid.org/0000-0002-6601-2165
creator: cjm
in subset: valid for go annotation extension
in subset: valid for gocam

characteristic of part of
type: ObjectProperty
sub property of: depends on
property chain axiom: characteristic of
property chain axiom: is part of
definition: q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
editor note: Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: inheres in part of
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
RO_0001900: RO_0001901

Axiom
annotated source: characteristic of part of
annotated property: propertyChainAxiom
annotated target: characteristic of
annotated target: is part of
RO_0002582: true

ecologically related to
type: ObjectProperty
definition: A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)
editor note: Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions
in subset: ro-eco

mereotopologically related to
type: ObjectProperty
definition: A mereological relationship or a topological relationship
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
RO_0001900: RO_0001901

developmentally related to
type: ObjectProperty
definition: A relationship that holds between entities participating in some developmental process (GO:0032502)
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development

enables
type: ObjectProperty
sub property of: capable of
inverse of: enabled by
property chain axiom: has part
property chain axiom: has component activity
example of usage: a particular instances of akt-2 enables some instance of protein kinase activity
definition: c enables p iff c is capable of p and c acts to execute p.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: catalyzes
alternative term: executes
alternative term: has
alternative term: is catalyzing
alternative term: is executing
IAO_0000232: This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
in subset: valid for go gp2term

functionally related to
type: ObjectProperty
definition: A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
IAO_0000232: This is a grouping relation that collects relations used for the purpose of connecting structure and function

part of structure that is capable of
type: ObjectProperty
sub property of: functionally related to
property chain axiom: is part of
property chain axiom: capable of
definition: this relation holds between c and p when c is part of some c', and c' is capable of p.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: false

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: is part of
annotated target: capable of
is a defining property chain axiom: true

involved in
type: ObjectProperty
sub property of: participates in
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: is part of
definition: c involved_in p if and only if c enables some process p', and p' is part of p
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: actively involved in
alternative term: enables part of

enabled by
type: ObjectProperty
sub property of: has participant
sub property of: functionally related to
definition: inverse of enables
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
in subset: valid for gocam

regulated by
type: ObjectProperty
sub property of: causally downstream of or within
type: TransitiveProperty
domain: process
range: process
definition: inverse of regulates
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
IAO_0000589: regulated by (processual)
in subset: RO_0002259

negatively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of negatively regulates
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
in subset: RO_0002259

positively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of positively regulates
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
in subset: RO_0002259

is member of
type: ObjectProperty
sub property of: is part of
inverse of: has member
example of usage: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
alternative term: is member of
alternative term: member part of
definition source: SIO
RO_0001900: RO_0001901
label: member of

has member
type: ObjectProperty
sub property of: has part
type: IrreflexiveProperty
example of usage: Example 1: a collection of sequences such as a genome being comprised of separate sequences of chromosomes Example 2: a collection of information entities such as a genotype being comprised of a background component and a variant component
definition: has member is a mereological relation between a collection and an item.
definition source: SIO
IAO_0000412: ro.owl
RO_0001900: RO_0001901

input of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has input
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
in subset: RO_0002259
in subset: ro-eco

output of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has output
term editor: Chris Mungall
in subset: RO_0002259
in subset: ro-eco

formed as result of
type: ObjectProperty
sub property of: output of
term editor: Chris Mungall

spatially coextensive with
type: ObjectProperty
sub property of: overlaps
property chain axiom: located in
property chain axiom:
  inverse of: located in
example of usage: A lump of clay and a statue
definition: x spatially_coextensive_with y if and inly if x and y have the same location
term editor: Chris Mungall
IAO_0000232: This relation is added for formal completeness. It is unlikely to be used in many practical scenarios

has developmental potential involving
type: ObjectProperty
sub property of: developmentally related to
domain: CARO_0000000
range: CARO_0000000
IAO_0000114: IAO_0000428
definition: x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
term editor: Chris Mungall

has potential to developmentally contribute to
type: ObjectProperty
sub property of: has developmental potential involving
IAO_0000114: IAO_0000428
definition: x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
term editor: Chris Mungall

has potential to develop into
type: ObjectProperty
sub property of: has developmental potential involving
IAO_0000114: IAO_0000428
definition: x has the potential to develop into y iff x develops into y or if x is capable of developing into y
term editor: Chris Mungall

has potential to directly develop into
type: ObjectProperty
sub property of: has potential to develop into
IAO_0000114: IAO_0000428
definition: x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
term editor: Chris Mungall

causally downstream of
type: ObjectProperty
sub property of: preceded by
sub property of: causally downstream of or within
inverse of: causally upstream of
IAO_0000114: IAO_0000428
definition: inverse of upstream of
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

immediately causally downstream of
type: ObjectProperty
sub property of: immediately preceded by
sub property of: causally downstream of
inverse of: immediately causally upstream of
IAO_0000114: IAO_0000428
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

indirectly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: indirectly regulates
type: TransitiveProperty
property chain axiom: directly positively regulates
property chain axiom: indirectly negatively regulates
definition: p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: indirectly activates
RO_0002579: positively regulates

indirectly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: indirectly regulates
type: TransitiveProperty
property chain axiom: directly negatively regulates
definition: p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: indirectly inhibits
RO_0002579: negatively regulates

causally related to
type: ObjectProperty
definition: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
editor note: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative? The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yie…
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

Axiom
annotated source: causally related to
annotated property: definition
annotated target: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
has db xref: https://en.wikipedia.org/wiki/Causality

causally upstream of
type: ObjectProperty
sub property of: precedes
sub property of: causally upstream of or within
type: TransitiveProperty
definition: p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
in subset: valid for go annotation extension
in subset: valid for gocam

immediately causally upstream of
type: ObjectProperty
sub property of: immediately precedes
sub property of: causally upstream of
definition: p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
RO_0002575: causally upstream of

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
definition: p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
editor note: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: influences (processual)
has_related_synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations
in subset: RO_0002259

involved in regulation of
type: ObjectProperty
sub property of: acts upstream of
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: regulates (processual)
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' regulates some p
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

involved in positive regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: positively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' positively regulates some p
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
RO_0004049: involved in regulation of

involved in negative regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: negatively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
RO_0004050: involved in regulation of

involved in or involved in regulation of
type: ObjectProperty
sub property of: acts upstream of or within
sub property of: functionally related to
sub property of: causal agent in process
definition: c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
editor note: OWL does not allow defining object properties via a Union
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: involved in or reguates

is active in
type: ObjectProperty
sub property of: overlaps
sub property of: functionally related to
property chain axiom: enables
property chain axiom: occurs in
example of usage: A protein that enables activity in a cytosol.
definition: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
term editor: Chris Mungall
alternative term: executes activity in
has exact synonym: enables activity in

Axiom
annotated source: is active in
annotated property: propertyChainAxiom
annotated target: enables
annotated target: occurs in
is a defining property chain axiom: true

Axiom
annotated source: is active in
annotated property: definition
annotated target: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
has db xref: GOC:cjm
has db xref: GOC:dos

interacts with
type: ObjectProperty
type: SymmetricProperty
domain: material entity
range: material entity
definition: A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
editor note: This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
editor note: Considering relabeling as 'pairwise interacts with'
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
IAO_0000232: Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
has db xref: RO:0002434
has exact synonym: in pairwise interaction with
has OBO namespace: source
id: interacts_with
in subset: ro-eco
shorthand: interacts_with

molecularly interacts with
type: ObjectProperty
sub property of: interacts with
type: SymmetricProperty
definition: An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: binds
alternative term: molecularly binds with

phosphorylates
type: ObjectProperty
sub property of: molecularly interacts with
editor note: Axiomatization to GO to be added later
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
alternative term: An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.

directly regulates activity of
type: ObjectProperty
sub property of: molecularly interacts with
sub property of: regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: regulates (processual)
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: https://orcid.org/0000-0003-4639-4431
term editor: Chris Mungall
term editor: Vasundra Touré
has exact synonym: molecularly controls

directly negatively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly negatively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: https://orcid.org/0000-0003-4639-4431
term editor: Chris Mungall
term editor: Vasundra Touré
alternative term: directly inhibits
has exact synonym: molecularly decreases activity of

directly positively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly positively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: https://orcid.org/0000-0003-4639-4431
term editor: Chris Mungall
term editor: Vasundra Touré
alternative term: directly activates
has exact synonym: molecularly increases activity of

helper property (not for use in curation)
type: ObjectProperty
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
IAO_0000232: This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.

composed primarily of
type: ObjectProperty
sub property of: has part
domain: material entity
range: material entity
example of usage: 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
definition: x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
term editor: Chris Mungall
definition source: http://www.ncbi.nlm.nih.gov/pubmed/22293552
RO_0001900: RO_0001901
in subset: ro-eco

has part that occurs in
type: ObjectProperty
domain: occurrent
range: independent continuant
property chain axiom: has part
property chain axiom: occurs in
definition: p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
term editor: Chris Mungall
in subset: ro-eco

Axiom
annotated source: has part that occurs in
annotated property: propertyChainAxiom
annotated target: has part
annotated target: occurs in
is a defining property chain axiom: true

is kinase activity
type: ObjectProperty
sub property of: molecular interaction relation helper property
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

transformation of
type: ObjectProperty
sub property of: develops from
type: TransitiveProperty
definition: x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships
term editor: Chris Mungall

immediate transformation of
type: ObjectProperty
sub property of: directly develops from
sub property of: transformation of
definition: x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t
term editor: Chris Mungall
RO_0002575: transformation of

causal agent in process
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: process has causal agent
definition: A relationship between a material entity and a process where the material entity has some causal role that influences the process
definition source: causal-relations

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: occurrent
range: occurrent
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

depends on
type: ObjectProperty
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

causal relation between entities
type: ObjectProperty
sub property of: causally related to
domain: continuant
range: continuant
editor note: The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

determined by part of
type: ObjectProperty
sub property of: overlaps
sub property of: causal relation between entities
domain: RO_0002577
range: material entity
definition: s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.
term editor: Chris Mungall
in subset: ro-eco

causally influenced by
type: ObjectProperty
sub property of: causal relation between entities
inverse of: causally influences
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: causally influenced by (entity-centric)

interaction relation helper property
type: ObjectProperty
sub property of: helper property (not for use in curation)
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

molecular interaction relation helper property
type: ObjectProperty
sub property of: interaction relation helper property
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

causally influences
type: ObjectProperty
sub property of: causal relation between entities
domain: continuant
range: continuant
property chain axiom: enables
property chain axiom: causally upstream of
property chain axiom: has input
property chain axiom: enabled by
definition: The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
term editor: https://orcid.org/0000-0002-6601-2165
term editor: https://orcid.org/0000-0003-4639-4431
term editor: Chris Mungall
term editor: Vasundra Touré
definition source: causal-relations
IAO_0000589: causally influences (entity-centric)

directly regulates
type: ObjectProperty
sub property of: regulates (processual)
sub property of: immediately causally upstream of
definition: p directly regulates q iff p is immediately causally upstream of q and p regulates q.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations
IAO_0000589: directly regulates (processual)
RO_0002575: regulates (processual)
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

has part structure that is capable of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal relation between material entity and a process
property chain axiom: has part
property chain axiom: capable of
example of usage: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
definition: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall

causal relation between material entity and a process
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: process
definition: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
editor note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
term editor: https://orcid.org/0000-0002-6601-2165
term editor: Chris Mungall
definition source: causal-relations

capable of regulating
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: regulates (processual)
example of usage: pyrethroid -> growth
definition: Holds between c and p if and only if c is capable of some activity a, and a regulates p.
definition source: causal-relations

capable of negatively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: negatively regulates
definition: Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
definition source: causal-relations

capable of positively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: positively regulates
example of usage: renin -> arteriolar smooth muscle contraction
definition: Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
definition source: causal-relations

process has causal agent
type: ObjectProperty
sub property of: causally related to
definition: Inverse of 'causal agent in process'
definition source: causal-relations

directly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: directly regulates
definition: p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.
definition source: causal-relations
IAO_0000589: directly positively regulates (process to process)
RO_0004049: directly regulates
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

directly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: directly regulates
definition: p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.
definition source: causal-relations
IAO_0000589: directly negatively regulates (process to process)
RO_0004050: directly regulates
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

produces
type: ObjectProperty
inverse of: produced by
domain: material entity
range: material entity
property chain axiom:
  inverse of: occurs in
property chain axiom: has output
IAO_0000114: IAO_0000125
definition: a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
term editor: Melissa Haendel
in subset: ro-eco
comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.

produced by
type: ObjectProperty
domain: material entity
range: material entity
IAO_0000114: IAO_0000125
definition: a produced_by b iff some process that occurs_in b has_output a.
term editor: Melissa Haendel
in subset: ro-eco

realized in response to stimulus
type: ObjectProperty
sub property of: causally related to
domain: realizable
range: material entity
property chain axiom: realized in response to
property chain axiom: has input
definition: A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M.
created by: cjm
creation date: 2017-12-26T19:45:49Z

enables subfunction
type: ObjectProperty
sub property of: functionally related to
property chain axiom: enables
property chain axiom: has part
definition: Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
created by: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2018-01-25T23:20:13Z

acts upstream of or within, positive effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, positive effect
RO_0004049: acts upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2018-01-26T23:49:30Z
in subset: valid for go gp2term

acts upstream of or within, negative effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, negative effect
RO_0004050: acts upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2018-01-26T23:49:51Z
in subset: valid for go gp2term

acts upstream of, positive effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, positive effect
property chain axiom: enables
property chain axiom: causally upstream of, positive effect
definition: c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
RO_0004049: acts upstream of
created by: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2018-01-26T23:53:14Z
in subset: valid for go gp2term

acts upstream of, negative effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, negative effect
property chain axiom: enables
property chain axiom: causally upstream of, negative effect
definition: c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
RO_0004050: acts upstream of
created by: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2018-01-26T23:53:22Z
in subset: valid for go gp2term

causally upstream of or within, negative effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004050: causally upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2018-03-13T23:55:05Z

causally upstream of or within, positive effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004049: causally upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
created by: cjm
creation date: 2018-03-13T23:55:19Z

realized in response to
type: ObjectProperty
sub property of: causally related to
domain: realizable
range: process
property chain axiom: realized in
property chain axiom: causally downstream of
example of usage: A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions.
example of usage: An inflammatory disease that is realized in response to an inflammatory process occurring in the gut (which is itself the realization of a process realized in response to harmful stimuli in the mucosal lining of th gut)
example of usage: Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph.
definition: r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r.
contributor: Austin Meier
contributor: Chris Mungall
contributor: David Osumi-Sutherland
contributor: Marie Angelique Laporte
has exact synonym: triggered by process

Axiom
annotated source: realized in response to
annotated property: hasExactSynonym
annotated target: triggered by process
has db xref: RO:cjm

regulates activity of
type: ObjectProperty
sub property of: causally influences
domain: material entity
range: material entity
definition: The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
term editor: https://orcid.org/0000-0003-4639-4431
term editor: Vasundra Touré

indirectly causally upstream of
type: ObjectProperty
sub property of: causally upstream of
definition: p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.
created by: https://orcid.org/0000-0003-1813-6857
created by: pg
creation date: 2022-09-26T06:07:17Z

indirectly regulates
type: ObjectProperty
sub property of: regulates (processual)
sub property of: indirectly causally upstream of
definition: p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.
created by: https://orcid.org/0000-0003-1813-6857
created by: pg
creation date: 2022-09-26T06:08:01Z

device utilizes material
type: ObjectProperty
property chain axiom: capable of
property chain axiom: has input
example of usage: A diagnostic testing device utilizes a specimen.
definition: X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.
term editor: https://orcid.org/0000-0001-9625-1899
term editor: https://orcid.org/0000-0003-2620-0345
IAO_0000232: A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.
IAO_0000232: See github ticket https://github.com/oborel/obo-relations/issues/497
contributor: https://orcid.org/0000-0001-9625-1899
contributor: https://orcid.org/0000-0003-2620-0345
creation date: 2021-11-08T12:00:00Z
has broad synonym: utilizes

regulates characteristic
type: ObjectProperty
sub property of: causally related to
domain: process
range: PATO_0000001
property chain axiom: regulates (processual)
definition: A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

positively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

negatively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: negatively regulates
property chain axiom: positively regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

provideInformationOn
type: ObjectProperty

providesAccessTo
type: ObjectProperty

consistOf
type: ObjectProperty

experimentalContextFor
type: ObjectProperty

generates
type: ObjectProperty

uses
type: ObjectProperty

componentOf
type: ObjectProperty

funds
type: ObjectProperty

organizedBy
type: ObjectProperty

createdBy
type: ObjectProperty

deployedOn
type: ObjectProperty

leadTo
type: ObjectProperty

resultsIn
type: ObjectProperty

usedIn
type: ObjectProperty

conductedAt
type: ObjectProperty

capableOfIdentifying
type: ObjectProperty

capableOfDetecting
type: ObjectProperty

contain
type: ObjectProperty

present
type: ObjectProperty

sameAs
type: ObjectProperty

isResultOf
type: ObjectProperty

aggregate
type: ObjectProperty

hasRole
type: ObjectProperty

characterizedBy
type: ObjectProperty

conductedOn
type: ObjectProperty

operatesOn
type: ObjectProperty

quantifiedBy
type: ObjectProperty

partOf
type: ObjectProperty

operates
type: ObjectProperty

operatedBy
type: ObjectProperty

managedAt
type: ObjectProperty

managed
type: ObjectProperty

depicts
type: ObjectProperty

depictedIn
type: ObjectProperty

fundedBy
type: ObjectProperty

funded
type: ObjectProperty

implements
type: ObjectProperty

implementedBy
type: ObjectProperty

owned by
type: ObjectProperty
NLSP field name: owned by

owns
type: ObjectProperty
sub property of: owns
NLSP field name: owns

investigates
type: ObjectProperty

investigatedBy
type: ObjectProperty

has parent hydride
type: ObjectProperty
has OBO namespace: chebi_ontology
id: has_parent_hydride
is cyclic: false
is transitive: false

is conjugate acid of
type: ObjectProperty
inverse of: is conjugate base of
has OBO namespace: chebi_ontology
id: is_conjugate_acid_of
is cyclic: true
is transitive: false

is conjugate base of
type: ObjectProperty
has OBO namespace: chebi_ontology
id: is_conjugate_base_of
is cyclic: true
is transitive: false

is substituent group from
type: ObjectProperty
has OBO namespace: chebi_ontology
id: is_substituent_group_from
is cyclic: false
is transitive: false

is tautomer of
type: ObjectProperty
type: TransitiveProperty
has OBO namespace: chebi_ontology
id: is_tautomer_of
is cyclic: true

interacts_with_an_exposure_receptor_via
type: ObjectProperty
has OBO namespace: source
id: interacts_with_an_exposure_receptor_via

interacts_with_an_exposure stressor_via
type: ObjectProperty
has OBO namespace: source
id: interacts_with_an_exposure_stressor_via

address
type: ObjectProperty
equivalent property: has address
comment: This object property has been mapped

agent
type: ObjectProperty
comment: This object property has been deprecated
deprecated: true

email
type: ObjectProperty
equivalent property: has email
comment: This object property has been mapped

geo
type: ObjectProperty
equivalent property: has geo
comment: This object property has been mapped

has additional name
type: ObjectProperty
comment: Used to support property parameters for the additional name data property

has address
type: ObjectProperty
range: Address
comment: To specify the components of the delivery address for the object

has calendar busy
type: ObjectProperty
comment: To specify the busy time associated with the object. (Was called FBURL in RFC6350)

has calendar link
type: ObjectProperty
comment: To specify the calendar associated with the object. (Was called CALURI in RFC6350)

has calendar request
type: ObjectProperty
comment: To specify the calendar user address to which a scheduling request be sent for the object. (Was called CALADRURI in RFC6350)

has category
type: ObjectProperty
comment: Used to support property parameters for the category data property

has country name
type: ObjectProperty
comment: Used to support property parameters for the country name data property

has email
type: ObjectProperty
range: Email
comment: To specify the electronic mail address for communication with the object

has formatted name
type: ObjectProperty
comment: Used to support property parameters for the formatted name data property

has family name
type: ObjectProperty
comment: Used to support property parameters for the family name data property

has gender
type: ObjectProperty
comment: To specify the sex or gender identity of the object. URIs are recommended to enable interoperable sex and gender codes to be used.

has geo
type: ObjectProperty
comment: To specify information related to the global positioning of the object. May also be used as a property parameter.

has given name
type: ObjectProperty
comment: Used to support property parameters for the given name data property

has honorific prefix
type: ObjectProperty
comment: Used to support property parameters for the honorific prefix data property

has honorific suffix
type: ObjectProperty
comment: Used to support property parameters for the honorific suffix data property

has messaging
type: ObjectProperty
comment: To specify the instant messaging and presence protocol communications with the object. (Was called IMPP in RFC6350)

has key
type: ObjectProperty
equivalent property: key
comment: To specify a public key or authentication certificate associated with the object

has language
type: ObjectProperty
comment: Used to support property parameters for the language data property

has locality
type: ObjectProperty
comment: Used to support property parameters for the locality data property

has logo
type: ObjectProperty
equivalent property: logo
comment: To specify a graphic image of a logo associated with the object

has member
type: ObjectProperty
domain: Group
range: Kind
comment: To include a member in the group this object represents. (This property can only be used by Group individuals)

has name
type: ObjectProperty
equivalent property: name
range: Name
comment: To specify the components of the name of the object

has nickname
type: ObjectProperty
comment: Used to support property parameters for the nickname data property

has note
type: ObjectProperty
comment: Used to support property parameters for the note data property

has organization name
type: ObjectProperty
comment: Used to support property parameters for the organization name data property

has organization unit name
type: ObjectProperty
comment: Used to support property parameters for the organization unit name data property

has photo
type: ObjectProperty
equivalent property: photo
comment: To specify an image or photograph information that annotates some aspect of the object

has postal code
type: ObjectProperty
comment: Used to support property parameters for the postal code data property

has region
type: ObjectProperty
comment: Used to support property parameters for the region data property

has related
type: ObjectProperty
comment: To specify a relationship between another entity and the entity represented by this object

has role
type: ObjectProperty
comment: Used to support property parameters for the role data property

has sound
type: ObjectProperty
equivalent property: sound
comment: To specify a digital sound content information that annotates some aspect of the object

has source
type: ObjectProperty
comment: To identify the source of directory information of the object

has street address
type: ObjectProperty
comment: Used to support property parameters for the street address data property

has telephone
type: ObjectProperty
equivalent property: telephone
comment: To specify the telephone number for telephony communication with the object

has title
type: ObjectProperty
comment: Used to support property parameters for the title data property

has uid
type: ObjectProperty
comment: To specify a value that represents a globally unique identifier corresponding to the object

has url
type: ObjectProperty
equivalent property: url
comment: To specify a uniform resource locator associated with the object

has value
type: ObjectProperty
comment: Used to indicate the resource value of an object property that requires property parameters

key
type: ObjectProperty
comment: This object property has been mapped

logo
type: ObjectProperty
comment: This object property has been mapped

name
type: ObjectProperty
comment: This object property has been mapped

organization
type: ObjectProperty
comment: This object property has been mapped. Use the organization-name data property.

photo
type: ObjectProperty
comment: This object property has been mapped

sound
type: ObjectProperty
comment: This object property has been mapped

telephone
type: ObjectProperty
comment: This object property has been mapped

url
type: ObjectProperty
comment: This object property has been mapped

data access service
type: ObjectProperty
comment: A site or end-point that gives access to the distribution of the dataset.
comment: Et websted eller endpoint der giver adgang til en repræsentation af datasættet. @da
comment: Umístění či přístupový bod zpřístupňující distribuci datové sady. @cs
comment: Un sitio o end-point que da acceso a la distribución de un conjunto de datos. @es
comment: Un sito o end-point che dà accesso alla distribuzione del set di dati. @it
label: dataadgangstjeneste @da
label: servicio de acceso de datos @es
label: servizio di accesso ai dati @it
label: služba pro přístup k datům @cs
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab tilføjet i DCAT 2.0. @da

access address
type: ObjectProperty
property chain axiom: data access service
property chain axiom: service end-point
comment: A URL of a resource that gives access to a distribution of the dataset. E.g. landing page, feed, SPARQL endpoint. Use for all cases except a simple download link, in which case downloadURL is preferred.
comment: Ceci peut être tout type d'URL qui donne accès à une distribution du jeu de données. Par exemple, un lien à une page HTML contenant un lien au jeu de données, un Flux RSS, un point d'accès SPARQL. Utilisez le lorsque votre catalogue ne contient pas d'information sur quoi il est ou quand ce n'est pas téléchargeable. @fr
comment: En URL for en ressource som giver adgang til en repræsentation af datsættet. Fx destinationsside, feed, SPARQL-endpoint. Anvendes i alle sammenhænge undtagen til angivelse af et simpelt download link hvor anvendelse af egenskaben downloadURL foretrækkes. @da
comment: Puede ser cualquier tipo de URL que de acceso a una distribución del conjunto de datos, e.g., página de destino, descarga, URL feed, punto de acceso SPARQL. Esta propriedad se debe usar cuando su catálogo de datos no tiene información sobre donde está o cuando no se puede descargar. @es
comment: URL zdroje, přes které je přístupná distribuce datové sady. Příkladem může být vstupní stránka, RSS kanál či SPARQL endpoint. Použijte ve všech případech kromě URL souboru ke stažení, pro které je lepší použít dcat:downloadURL. @cs
comment: Un URL di una risorsa che consente di accedere a una distribuzione del set di dati. Per esempio, pagina di destinazione, feed, endpoint SPARQL. Da utilizzare per tutti i casi, tranne quando si tratta di un semplice link per il download nel qual caso è preferito downloadURL. @it
comment: Μπορεί να είναι οποιουδήποτε είδους URL που δίνει πρόσβαση στη διανομή ενός συνόλου δεδομένων. Π.χ. ιστοσελίδα αρχικής πρόσβασης, μεταφόρτωση, feed URL, σημείο διάθεσης SPARQL. Να χρησιμοποιείται όταν ο κατάλογος δεν περιέχει πληροφορίες εαν πρόκειται ή όχι για μεταφορτώσιμο αρχείο. @el
comment: أي رابط يتيح الوصول إلى البيانات. إذا كان الرابط هو ربط مباشر لملف يمكن تحميله استخدم الخاصية downloadURL @ar
comment: データセットの配信にアクセス権を与えるランディング・ページ、フィード、SPARQLエンドポイント、その他の種類の資源。 @ja
label: URL d'accès @fr
label: URL de acceso @es
label: URL πρόσβασης @el
label: adgangsadresse @da
label: indirizzo di accesso @it
label: přístupová adresa @cs
label: رابط وصول @ar
label: アクセスURL @ja
alternative label: adgangsURL @da
editorial note: Status: English Definition text modified by DCAT revision team, updated Italian and Czech translation provided, translations for other languages pending.
editorial note: rdfs:label, rdfs:comment and skos:scopeNote have been modified. Non-english versions except for Italian must be updated.
scope note: El rango es una URL. Si la distribución es accesible solamente través de una página de destino (es decir, si no se conoce una URL de descarga directa), entonces el enlance a la página de destino debe ser duplicado como accessURL en la distribución. @es
scope note: Hvis en eller flere distributioner kun er tilgængelige via en destinationsside (dvs. en URL til direkte download er ikke kendt), så bør destinationssidelinket gentages som adgangsadresse for distributionen. @da
scope note: If the distribution(s) are accessible only through a landing page (i.e. direct download URLs are not known), then the landing page link should be duplicated as accessURL on a distribution.
scope note: La valeur est une URL. Si la distribution est accessible seulement au travers d'une page d'atterrissage (c-à-dire on n'ignore une URL de téléchargement direct), alors le lien à la page d'atterrissage doit être dupliqué comee accessURL sur la distribution. @fr
scope note: Pokud jsou distribuce přístupné pouze přes vstupní stránku (tj. URL pro přímé stažení nejsou známa), pak by URL přístupové stránky mělo být duplikováno ve vlastnosti distribuce accessURL. @cs
scope note: Se le distribuzioni sono accessibili solo attraverso una pagina web (ad esempio, gli URL per il download diretto non sono noti), allora il link della pagina web deve essere duplicato come accessURL sulla distribuzione. @it
scope note: Η τιμή είναι ένα URL. Αν η/οι διανομή/ές είναι προσβάσιμη/ες μόνο μέσω μίας ιστοσελίδας αρχικής πρόσβασης (δηλαδή αν δεν υπάρχουν γνωστές διευθύνσεις άμεσης μεταφόρτωσης), τότε ο σύνδεσμος της ιστοσελίδας αρχικής πρόσβασης πρέπει να αναπαραχθεί ως accessURL σε μία διανομή. @el
scope note: 確実にダウンロードでない場合や、ダウンロードかどうかが不明である場合は、downloadURLではなく、accessURLを用いてください。ランディング・ページを通じてしか配信にアクセスできない場合（つまり、直接的なダウンロードURLが不明）は、配信におけるaccessURLとしてランディング・ページのリンクをコピーすべきです（SHOULD）。 @ja

catalog
type: ObjectProperty
comment: A catalog whose contents are of interest in the context of this catalog.
comment: Et katalog hvis indhold er relevant i forhold til det aktuelle katalog. @da
comment: Katalog, jehož obsah je v kontextu tohoto katalogu zajímavý. @cs
comment: Un catalogo i cui contenuti sono di interesse nel contesto di questo catalogo. @it
comment: Un catálogo cuyo contenido es de interés en el contexto del catálogo que está siendo descripto. @es
label: catalogo @it
label: catálogo @es
label: katalog @cs
alternative label: har delkatalog @da
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it

compression format
type: ObjectProperty
sub property of: format
comment: El formato de la distribución en el que los datos están en forma comprimida, e.g. para reducir el tamaño del archivo a bajar. @es
comment: Formát komprese souboru, ve kterém jsou data poskytována v komprimované podobě, např. ke snížení velikosti souboru ke stažení. @cs
comment: Il formato di compressione della distribuzione nel quale i dati sono in forma compressa, ad es. per ridurre le dimensioni del file da scaricare. @it
comment: Kompressionsformatet for distributionen som indeholder data i et komprimeret format, fx for at reducere størrelsen af downloadfilen. @da
comment: The compression format of the distribution in which the data is contained in a compressed form, e.g. to reduce the size of the downloadable file.
label: formato de compresión @es
label: formato di compressione @it
label: formát komprese @cs
label: kompressionsformat @da
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab tilføjet i DCAT 2.0. @da
scope note: Denne egenskab kan anvendes når filerne i en distribution er blevet komprimeret, fx i en ZIP-fil. Formatet BØR udtrykkes ved en medietype som defineret i 'IANA media types registry', hvis der optræder en relevant medietype dér: https://www.iana.org/assignments/media-types/. @da
scope note: Esta propiedad se debe usar cuando los archivos de la distribución están comprimidos, por ejemplo en un archivo ZIP. El formato DEBERÍA expresarse usando un 'media type', tales como los definidos en el registro IANA de 'media types' https://www.iana.org/assignments/media-types/, si está disponibles. @es
scope note: Questa proprietà deve essere utilizzata quando i file nella distribuzione sono compressi, ad es. in un file ZIP. Il formato DOVREBBE essere espresso usando un tipo di media come definito dal registro dei tipi di media IANA https://www.iana.org/assignments/media-types/, se disponibile. @it
scope note: Tato vlastnost se použije, když jsou soubory v distribuci komprimovány, např. v ZIP souboru. Formát BY MĚL být vyjádřen pomocí typu média definovaného v registru IANA https://www.iana.org/assignments/media-types/, pokud existuje. @cs
scope note: This property is to be used when the files in the distribution are compressed, e.g. in a ZIP file. The format SHOULD be expressed using a media type as defined by IANA media types registry https://www.iana.org/assignments/media-types/, if available.

contact point
type: ObjectProperty
comment: Información relevante de contacto para el recurso catalogado. Se recomienda el uso de vCard. @es
comment: Informazioni di contatto rilevanti per la risorsa catalogata. Si raccomanda l'uso di vCard. @it
comment: Relevant contact information for the catalogued resource. Use of vCard is recommended.
comment: Relevante kontaktoplysninger for den katalogiserede ressource. Anvendelse af vCard anbefales. @da
comment: Relevantní kontaktní informace pro katalogizovaný zdroj. Doporučuje se použít slovník VCard. @cs
comment: Relie un jeu de données à une information de contact utile en utilisant VCard. @fr
comment: Συνδέει ένα σύνολο δεδομένων με ένα σχετικό σημείο επικοινωνίας, μέσω VCard. @el
comment: تربط قائمة البيانات بعنوان اتصال موصف باستخدام VCard @ar
comment: データセットを、VCardを用いて提供されている適切な連絡先情報にリンクします。 @ja
label: Punto de contacto @es
label: kontaktní bod @cs
label: kontaktpunkt @da
label: point de contact @fr
label: punto di contatto @it
label: σημείο επικοινωνίας @el
label: عنوان اتصال @ar
label: 窓口 @ja
editorial note: Status: English Definition text modified by DCAT revision team, Italian, Spanish and Czech translations provided, other translations pending.

dataset
type: ObjectProperty
comment: A collection of data that is listed in the catalog.
comment: En samling af data som er opført i kataloget. @da
comment: Kolekce dat, která je katalogizována v katalogu. @cs
comment: Relie un catalogue à un jeu de données faisant partie de ce catalogue. @fr
comment: Un conjunto de datos que se lista en el catálogo. @es
comment: Una raccolta di dati che è elencata nel catalogo. @it
comment: Συνδέει έναν κατάλογο με ένα σύνολο δεδομένων το οποίο ανήκει στον εν λόγω κατάλογο. @el
comment: تربط الفهرس بقائمة بيانات ضمنه @ar
comment: カタログの一部であるデータセット。 @ja
label: conjunto de datos @es
label: datasæt @da
label: datová sada @cs
label: jeu de données @fr
label: σύνολο δεδομένων @el
label: قائمة بيانات @ar
label: データセット @ja
alternative label: datasamling @da
alternative label: har datasæt @da
editorial note: Status: English Definition text modified by DCAT revision team, Italian, Spanish and Czech translation provided, other translations pending.

distribuce
type: ObjectProperty
sub property of: relation
comment: An available distribution of the dataset.
comment: Connecte un jeu de données à des distributions disponibles. @fr
comment: Dostupná distribuce datové sady. @cs
comment: En tilgængelig repræsentation af datasættet. @da
comment: Una distribución disponible del conjunto de datos. @es
comment: Una distribuzione disponibile per il set di dati. @it
comment: Συνδέει ένα σύνολο δεδομένων με μία από τις διαθέσιμες διανομές του. @el
comment: تربط قائمة البيانات بطريقة أو بشكل يسمح الوصول الى البيانات @ar
comment: データセットを、その利用可能な配信に接続します。 @ja
label: distribución @es
label: distribution
label: distribuzione @it
label: διανομή @el
label: توزيع @ar
label: データセット配信 @ja
alternative label: har distribution @da
editorial note: Status: English Definition text modified by DCAT revision team, translations pending (except for Italian, Spanish and Czech).

download URL
type: ObjectProperty
comment: Ceci est un lien direct à un fichier téléchargeable en un format donnée. Exple fichier CSV ou RDF. Le format est décrit par les propriétés de distribution dct:format et/ou dcat:mediaType. @fr
comment: La URL de un archivo descargable en el formato dato. Por ejemplo, archivo CSV o archivo RDF. El formato se describe con las propiedades de la distribución dct:format y/o dcat:mediaType. @es
comment: Questo è un link diretto al file scaricabile in un dato formato. E.g. un file CSV o un file RDF. Il formato è descritto dal dct:format e/o dal dcat:mediaType della distribuzione. @it
comment: The URL of the downloadable file in a given format. E.g. CSV file or RDF file. The format is indicated by the distribution's dct:format and/or dcat:mediaType.
comment: URL souboru ke stažení v daném formátu, například CSV nebo RDF soubor. Formát je popsán vlastností distribuce dct:format a/nebo dcat:mediaType. @cs
comment: URL til fil der kan downloades i et bestemt format. Fx en CSV-fil eller en RDF-fil. Formatet for distributionen angives ved hjælp af egenskaberne dct:format og/eller dcat:mediaType. @da
comment: dcat:downloadURLはdcat:accessURLの特定の形式です。しかし、DCATプロファイルが非ダウンロード・ロケーションに対してのみaccessURLを用いる場合には、より強い分離を課すことを望む可能性があるため、この含意を強化しないように、DCATは、dcat:downloadURLをdcat:accessURLのサブプロパティーであると定義しません。 @ja
comment: Είναι ένας σύνδεσμος άμεσης μεταφόρτωσης ενός αρχείου σε μια δεδομένη μορφή. Π.χ. ένα αρχείο CSV ή RDF. Η μορφη αρχείου περιγράφεται από τις ιδιότητες dct:format ή/και dcat:mediaType της διανομής. @el
comment: رابط مباشر لملف يمكن تحميله. نوع الملف يتم توصيفه باستخدام الخاصية dct:format dcat:mediaType @ar
label: URL de descarga @es
label: URL de téléchargement @fr
label: URL di scarico @it
label: URL souboru ke stažení @cs
label: URL μεταφόρτωσης @el
label: downloadURL @da
label: رابط تحميل @ar
label: ダウンロードURL @ja
editorial note: Status: English Definition text modified by DCAT revision team, Italian, Spanish and Czech translation updated, other translations pending.
editorial note: rdfs:label, rdfs:comment and/or skos:scopeNote have been modified. Non-english versions must be updated.
scope note: El valor es una URL. @es
scope note: La valeur est une URL. @fr
scope note: dcat:downloadURL BY MĚLA být použita pro adresu, ze které je distribuce přímo přístupná, typicky skrze požadavek HTTP Get. @cs
scope note: dcat:downloadURL BØR anvendes til angivelse af den adresse hvor distributionen er tilgængelig direkte, typisk gennem et HTTP Get request. @da
scope note: dcat:downloadURL DOVREBBE essere utilizzato per l'indirizzo a cui questa distribuzione è disponibile direttamente, in genere attraverso una richiesta Get HTTP. @it
scope note: dcat:downloadURL SHOULD be used for the address at which this distribution is available directly, typically through a HTTP Get request.
scope note: Η τιμή είναι ένα URL. @el

description of service end-point
type: ObjectProperty
comment: A description of the service end-point, including its operations, parameters etc.
comment: En beskrivelse af det pågældende tjenesteendpoint, inklusiv dets operationer, parametre etc. @da
comment: Popis přístupového bodu služby včetně operací, parametrů apod. @cs
comment: Una descripción del end-point del servicio, incluyendo sus operaciones, parámetros, etc. @es
comment: Una descrizione dell'endpoint del servizio, incluse le sue operazioni, parametri, ecc. @it
label: descripción del end-point del servicio @es
label: descrizione dell'endpoint del servizio @it
label: endpointbeskrivelse @da
label: popis přístupového bodu služby @cs
change note: New property in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0.
change note: Nuova proprietà in DCAT 2.0. @it
change note: Ny egenskab i DCAT 2.0. @da
definition: Una descripción del end-point del servicio, incluyendo sus operaciones, parámetros, etc.. @es
scope note: An endpoint description may be expressed in a machine-readable form, such as an OpenAPI (Swagger) description, an OGC GetCapabilities response, a SPARQL Service Description, an OpenSearch or WSDL document, a Hydra API description, else in text or some other informal mode if a formal representation is not possible.
scope note: En beskrivelse af et endpoint kan udtrykkes i et maskinlæsbart format, såsom OpenAPI (Swagger)-beskrivelser, et OGC GetCapabilities svar, en SPARQL tjenestebeskrivelse, en OpenSearch- eller et WSDL-dokument, en Hydra-API-beskrivelse, eller i tekstformat eller i et andet uformelt format, hvis en formel repræsentation ikke er mulig. @da
scope note: Endpointbeskrivelsen giver specifikke oplysninger om den konkrete endpointinstans, mens dct:conformsTo anvendes til at indikere den overordnede standard eller specifikation som endpointet er i overensstemmelse med. @da
scope note: La descripción del endpoint brinda detalles específicos de la instancia del endpoint, mientras que dct:conformsTo se usa para indicar el estándar general o especificación que implementa el endpoint. @es
scope note: La descrizione dell'endpoint fornisce dettagli specifici dell'istanza dell'endpoint reale, mentre dct:conformsTo viene utilizzato per indicare lo standard o le specifiche implementate dall'endpoint. @it
scope note: Popis přístupového bodu dává specifické detaily jeho konkrétní instance, zatímco dct:conformsTo indikuje obecný standard či specifikaci kterou přístupový bod implementuje. @cs
scope note: Popis přístupového bodu může být vyjádřen ve strojově čitelné formě, například jako popis OpenAPI (Swagger), odpověď služby OGC getCapabilities, pomocí slovníku SPARQL Service Description, jako OpenSearch či WSDL document, jako popis API dle slovníku Hydra, a nebo textově nebo jiným neformálním způsobem, pokud není možno použít formální reprezentaci. @cs
scope note: The endpoint description gives specific details of the actual endpoint instance, while dct:conformsTo is used to indicate the general standard or specification that the endpoint implements.
scope note: Una descripción del endpoint del servicio puede expresarse en un formato que la máquina puede interpretar, tal como una descripción basada en OpenAPI (Swagger), una respuesta OGC GetCapabilities, una descripción de un servicio SPARQL, un documento OpenSearch o WSDL, una descripción con la Hydra API, o en texto u otro modo informal si la representación formal no es posible. @es
scope note: Una descrizione dell'endpoint può essere espressa in un formato leggibile dalla macchina, come una descrizione OpenAPI (Swagger), una risposta GetCapabilities OGC, una descrizione del servizio SPARQL, un documento OpenSearch o WSDL, una descrizione API Hydra, o con del testo o qualche altra modalità informale se una rappresentazione formale non è possibile. @it

service end-point
type: ObjectProperty
comment: Kořenové umístění nebo hlavní přístupový bod služby (IRI přístupné přes Web). @cs
comment: La locazione principale o l'endpoint primario del servizio (un IRI risolvibile via web). @it
comment: La posición raíz o end-point principal del servicio (una IRI web). @es
comment: Rodplaceringen eller det primære endpoint for en tjeneste (en web-resolverbar IRI). @da
comment: The root location or primary endpoint of the service (a web-resolvable IRI).
label: end-point del servicio @es
label: end-point del servizio @it
label: přístupový bod služby @cs
label: tjenesteendpoint @da
change note: New property in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà in DCAT 2.0. @it

hadRole
type: ObjectProperty
comment: Den funktion en entitet eller aktør har i forhold til en anden ressource. @da
comment: Funkce entity či agenta ve vztahu k jiné entitě či zdroji. @cs
comment: La función de una entidad o agente con respecto a otra entidad o recurso. @es
comment: La funzione di un'entità o un agente rispetto ad un'altra entità o risorsa. @it
comment: The function of an entity or agent with respect to another entity or resource.
label: haRuolo @it
label: havde rolle @da
label: sehraná role @cs
label: tiene rol @it
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
editorial note: Agregada en DCAT para complementar prov:hadRole (cuyo uso está limitado a roles en el contexto de una actividad, con dominio prov:Association. @es
editorial note: Introdotta in DCAT per completare prov:hadRole (il cui uso è limitato ai ruoli nel contesto di un'attività, con il dominio di prov:Association. @it
editorial note: Introduced into DCAT to complement prov:hadRole (whose use is limited to roles in the context of an activity, with the domain of prov:Association.
editorial note: Introduceret i DCAT for at supplere prov:hadRole (hvis anvendelse er begrænset til roller i forbindelse med en aktivitet med domænet prov:Association). @da
editorial note: Přidáno do DCAT pro doplnění vlastnosti prov:hadRole (jejíž užití je omezeno na role v kontextu aktivity, s definičním oborem prov:Association). @cs
scope note: Kan vendes ved kvalificerede krediteringer til at angive en aktørs rolle i forhold en entitet. Det anbefales at værdierne styres som et kontrolleret udfaldsrum med aktørroller, såsom http://registry.it.csiro.au/def/isotc211/CI_RoleCode. @da
scope note: May be used in a qualified-attribution to specify the role of an Agent with respect to an Entity. It is recommended that the value be taken from a controlled vocabulary of agent roles, such as http://registry.it.csiro.au/def/isotc211/CI_RoleCode.
scope note: May be used in a qualified-relation to specify the role of an Entity with respect to another Entity. It is recommended that the value be taken from a controlled vocabulary of entity roles such as: ISO 19115 DS_AssociationTypeCode http://registry.it.csiro.au/def/isotc211/DS_AssociationTypeCode; IANA Registry of Link Relations https://www.iana.org/assignments/link-relation; DataCite metadata schema; MARC relators https://id.loc.gov/vocabulary/relators.
scope note: Může být použito v kvalifikovaném přiřazení pro specifikaci role Agenta ve vztahu k Entitě. Je doporučeno hodnotu vybrat z řízeného slovníku rolí agentů, jako například http://registry.it.csiro.au/def/isotc211/CI_RoleCode. @cs
scope note: Může být použito v kvalifikovaném vztahu pro specifikaci role Entity ve vztahu k jiné Entitě. Je doporučeno použít hodnotu z řízeného slovníku rolí entit, jako například ISO 19115 DS_AssociationTypeCode http://registry.it.csiro.au/def/isotc211/DS_AssociationTypeCode, IANA Registry of Link Relations https://www.iana.org/assignments/link-relation, DataCite metadata schema, MARC relators https://id.loc.gov/vocabulary/relators. @cs
scope note: Puede usarse en una atribución cualificada para especificar el rol de un Agente con respecto a una Entidad. Se recomienda que el valor sea de un vocabulario controlado de roles de agentes, como por ejemplo http://registry.it.csiro.au/def/isotc211/CI_RoleCode. @es
scope note: Puede usarse en una atribución cualificada para especificar el rol de una Entidad con respecto a otra Entidad. Se recomienda que su valor se tome de un vocabulario controlado de roles de entidades como por ejemplo: ISO 19115 DS_AssociationTypeCode http://registry.it.csiro.au/def/isotc211/DS_AssociationTypeCode; IANA Registry of Link Relations https://www.iana.org/assignments/link-relation; esquema de metadatos de DataCite; MARC relators https://id.loc.gov/vocabulary/relators. @es
scope note: Può essere utilizzata in una relazione qualificata per specificare il ruolo di un'entità rispetto a un'altra entità. Si raccomanda che il valore sia preso da un vocabolario controllato di ruoli di entità come ISO 19115 DS_AssociationTypeCode http://registry.it.csiro.au/def/isotc211/DS_AssociationTypeCode, IANA Registry of Link Relations https://www.iana.org/assignments/link-relation, DataCite metadata schema, o MARC relators https://id.loc.gov/vocabulary/relators. @it
scope note: Può essere utilizzato in un'attribuzione qualificata per specificare il ruolo di un agente rispetto a un'entità. Si raccomanda che il valore sia preso da un vocabolario controllato di ruoli di agente, come ad esempio http://registry.it.csiro.au/def/isotc211/CI_RoleCode. @it

landing page
type: ObjectProperty
sub property of: page
comment: A Web page that can be navigated to in a Web browser to gain access to the catalog, a dataset, its distributions and/or additional information.
comment: En webside som der kan navigeres til i en webbrowser for at få adgang til kataloget, et datasæt, dets distributioner og/eller yderligere information. @da
comment: Una pagina web che può essere navigata per ottenere l'accesso al catalogo, ad un dataset, alle distribuzioni del dataset e/o ad informazioni addizionali. @it
comment: Una página web que puede ser visitada en un explorador Web para tener acceso el catálogo, un conjunto de datos, sus distribuciones y/o información adicional. @es
comment: Une page Web accessible par un navigateur Web donnant accès au catalogue, un jeu de données, ses distributions et/ou des informations additionnelles. @fr
comment: Webová stránka, na kterou lze pro získání přístupu ke katalogu, datové sadě, jejím distribucím a/nebo dalším informacím přistoupit webovým prohlížečem. @cs
comment: Μία ιστοσελίδα πλοηγίσιμη μέσω ενός φυλλομετρητή (Web browser) που δίνει πρόσβαση στο σύνολο δεδομένων, τις διανομές αυτού ή/και επιπρόσθετες πληροφορίες. @el
comment: صفحة وب يمكن من خلالها الوصول الى قائمة البيانات أو إلى معلومات إضافية متعلقة بها @ar
comment: データセット、その配信および（または）追加情報にアクセスするためにウエブ・ブラウザでナビゲートできるウェブページ。 @ja
label: destinationsside @da
label: page d'atterrissage @fr
label: pagina di destinazione @it
label: página de destino @es
label: vstupní stránka @cs
label: ιστοσελίδα αρχικής πρόσβασης @el
label: صفحة وصول @ar
label: ランディング・ページ @ja
definition: En webside som en webbrowser kan navigeres til for at få adgang til kataloget, et datasæt, dets distritbutioner og/eller yderligere information. @da
scope note: Hvis en eller flere distributioner kun er tilgængelige via en destinationsside (dvs. en URL til direkte download er ikke kendt), så bør destinationssidelinket gentages som adgangsadresse for en distribution. @da
scope note: If the distribution(s) are accessible only through a landing page (i.e. direct download URLs are not known), then the landing page link should be duplicated as accessURL on a distribution.
scope note: Pokud je distribuce dostupná pouze přes vstupní stránku, t.j. přímý URL odkaz ke stažení není znám, URL přístupové stránky by mělo být duplikováno ve vlastnosti distribuce accessURL. @cs
scope note: Se la distribuzione è accessibile solo attraverso una pagina di destinazione (cioè, un URL di download diretto non è noto), il link alla pagina di destinazione deve essere duplicato come accessURL sulla distribuzione. @it
scope note: Si la distribución es accesible solamente través de una página de aterrizaje (i.e., no se conoce una URL de descarga directa), entonces el enlance a la página de aterrizaje debe ser duplicado como accessURL sobre la distribución. @es
scope note: Si la distribution est seulement accessible à travers une page d'atterrissage (exple. pas de connaissance d'URLS de téléchargement direct ), alors le lien de la page d'atterrissage doit être dupliqué comme accessURL sur la distribution. @fr
scope note: Αν η/οι διανομή/ές είναι προσβάσιμη/ες μόνο μέσω μίας ιστοσελίδας αρχικής πρόσβασης (δηλαδή αν δεν υπάρχουν γνωστές διευθύνσεις άμεσης μεταφόρτωσης), τότε ο σύνδεσμος της ιστοσελίδας αρχικής πρόσβασης πρέπει να αναπαραχθεί ως accessURL σε μία διανομή. @el
scope note: ランディング・ページを通じてしか配信にアクセスできない場合（つまり、直接的なダウンロードURLが不明）には、配信におけるaccessURLとしてランディング・ページのリンクをコピーすべきです（SHOULD）。 @ja

media type
type: ObjectProperty
sub property of: format
comment: Cette propriété doit être utilisée quand c'est définit le type de média de la distribution en IANA, sinon dct:format DOIT être utilisé avec différentes valeurs. @fr
comment: Esta propiedad debe ser usada cuando está definido el tipo de media de la distribución en IANA, de otra manera dct:format puede ser utilizado con diferentes valores @es
comment: Il tipo di media della distribuzione come definito da IANA @it
comment: Medietypen for distributionen som den er defineret af IANA. @da
comment: The media type of the distribution as defined by IANA
comment: Typ média distribuce definovaný v IANA. @cs
comment: Η ιδιότητα αυτή ΘΑ ΠΡΕΠΕΙ να χρησιμοποιείται όταν ο τύπος μέσου μίας διανομής είναι ορισμένος στο IANA, αλλιώς η ιδιότητα dct:format ΔΥΝΑΤΑΙ να χρησιμοποιηθεί με διαφορετικές τιμές. @el
comment: يجب استخدام هذه الخاصية إذا كان نوع الملف معرف ضمن IANA @ar
comment: このプロパティーは、配信のメディア・タイプがIANAで定義されているときに使用すべきで（SHOULD）、そうでない場合には、dct:formatを様々な値と共に使用できます（MAY）。 @ja
label: medietype @da
label: tipo de media @es
label: tipo di media @it
label: typ média @cs
label: type de média @fr
label: τύπος μέσου @el
label: نوع الميديا @ar
label: メディア・タイプ @ja
change note: Il range di dcat:mediaType è stato ristretto come parte della revisione di DCAT. @it
change note: Obor hodnot dcat:mediaType byl zúžen v této revizi DCAT. @cs
change note: The range of dcat:mediaType has been tightened as part of the revision of DCAT.
definition: Esta propiedad debe ser usada cuando está definido el tipo de media de la distribución en IANA, de otra manera dct:format puede ser utilizado con diferentes valores. @es
definition: Il tipo di media della distribuzione come definito da IANA. @it
definition: The media type of the distribution as defined by IANA.
editorial note: Status: English Definition text modified by DCAT revision team, Italian and Czech translation provided, other translations pending. Note some inconsistency on def vs. usage.
scope note: Denne egenskab BØR anvendes hvis distributionens medietype optræder i 'IANA media types registry' https://www.iana.org/assignments/media-types/, ellers KAN egenskaben dct:format anvendes med et andet udfaldsrum. @da
scope note: Esta propiedad DEBERÍA usarse cuando el 'media type' de la distribución está definido en el registro IANA de 'media types' https://www.iana.org/assignments/media-types/, de lo contrario, dct:format PUEDE usarse con distintos valores. @es
scope note: Questa proprietà DEVE essere usata quando il tipo di media della distribuzione è definito nel registro dei tipi di media IANA https://www.iana.org/assignments/media-types/, altrimenti dct:format PUO 'essere usato con differenti valori. @it
scope note: Tato vlastnost BY MĚLA být použita, je-li typ média distribuce definován v registru IANA https://www.iana.org/assignments/media-types/. V ostatních případech MŮŽE být použita vlastnost dct:format s jinými hodnotami. @cs
scope note: This property SHOULD be used when the media type of the distribution is defined in the IANA media types registry https://www.iana.org/assignments/media-types/, otherwise dct:format MAY be used with different values.

packaging format
type: ObjectProperty
sub property of: format
comment: Balíčkový formát souboru, ve kterém je jeden či více souborů seskupeno dohromady, např. aby bylo možné stáhnout sadu souvisejících souborů naráz. @cs
comment: El formato del archivo en que se agrupan uno o más archivos de datos, e.g. para permitir que un conjunto de archivos relacionados se bajen juntos. @es
comment: Format til pakning af data med henblik på distribution af en eller flere relaterede datafiler der samles til en enhed med henblik på samlet distribution. @da
comment: Il formato di impacchettamento della distribuzione in cui uno o più file di dati sono raggruppati insieme, ad es. per abilitare un insieme di file correlati da scaricare insieme. @it
comment: The package format of the distribution in which one or more data files are grouped together, e.g. to enable a set of related files to be downloaded together.
label: formato de empaquetado @es
label: formato di impacchettamento @it
label: formát balíčku @cs
label: pakkeformat @da
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab tilføjet i DCAT 2.0. @da
scope note: Denne egenskab kan anvendes hvis filerne i en distribution er pakket, fx i en TAR-fil, en Frictionless Data Package eller en Bagit-fil. Formatet BØR udtrykkes ved en medietype som defineret i 'IANA media types registry', hvis der optræder en relevant medietype dér: https://www.iana.org/assignments/media-types/. @da
scope note: Esta propiedad se debe usar cuando los archivos de la distribución están empaquetados, por ejemplo en un archivo TAR, Frictionless Data Package o Bagit. El formato DEBERÍA expresarse usando un 'media type', tales como los definidos en el registro IANA de 'media types' https://www.iana.org/assignments/media-types/, si está disponibles. @es
scope note: Questa proprietà deve essere utilizzata quando i file nella distribuzione sono impacchettati, ad esempio in un file TAR, Frictionless Data Package o Bagit. Il formato DOVREBBE essere espresso utilizzando un tipo di supporto come definito dal registro dei tipi di media IANA https://www.iana.org/assignments/media-types/, se disponibili. @it
scope note: Tato vlastnost se použije, když jsou soubory v distribuci zabaleny, např. v souboru TAR, v balíčku Frictionless Data Package nebo v souboru Bagit. Formát BY MĚL být vyjádřen pomocí typu média definovaného v registru IANA https://www.iana.org/assignments/media-types/, pokud existuje. @cs
scope note: This property to be used when the files in the distribution are packaged, e.g. in a TAR file, a Frictionless Data Package or a Bagit file. The format SHOULD be expressed using a media type as defined by IANA media types registry https://www.iana.org/assignments/media-types/, if available.

qualified relation
type: ObjectProperty
comment: Enlace a una descripción de la relación con otro recurso. @es
comment: Link a una descrizione di una relazione con un'altra risorsa. @it
comment: Link to a description of a relationship with another resource.
comment: Odkaz na popis vztahu s jiným zdrojem. @cs
comment: Reference til en beskrivelse af en relation til en anden ressource. @da
label: Kvalificeret relation @da
label: kvalifikovaný vztah @cs
label: relación calificada @es
label: relazione qualificata @it
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab tilføjet i DCAT 2.0. @da
change note: Propiedad nueva añadida en DCAT 2.0. @es
editorial note: Introdotta in DCAT per integrare le altre relazioni qualificate di PROV. @it
editorial note: Introduced into DCAT to complement the other PROV qualified relations.
editorial note: Introduceret i DCAT med henblik på at supplere de øvrige kvalificerede relationer fra PROV. @da
editorial note: Přidáno do DCAT k doplnění jiných kvalifikovaných vztahů ze slovníku PROV. @cs
editorial note: Se incluyó en DCAT para complementar las relaciones calificadas disponibles en PROV. @es
scope note: Anvendes til at referere til en anden ressource hvor relationens betydning er kendt men ikke matcher en af de standardiserede egenskaber fra Dublin Core (dct:hasPart, dct:isPartOf, dct:conformsTo, dct:isFormatOf, dct:hasFormat, dct:isVersionOf, dct:hasVersion, dct:replaces, dct:isReplacedBy, dct:references, dct:isReferencedBy, dct:requires, dct:isRequiredBy) eller PROV-O-egenskaber (prov:wasDerivedFrom, prov:wasInfluencedBy, prov:wasQuotedFrom, prov:wasRevisionOf, prov:hadPrimarySource, prov:alternateOf, prov:specializationOf). @da
scope note: Použito pro odkazování na jiný zdroj, kde druh vztahu je znám, ale neodpovídá standardním vlastnostem ze slovníku Dublin Core (dct:hasPart, dct:isPartOf, dct:conformsTo, dct:isFormatOf, dct:hasFormat, dct:isVersionOf, dct:hasVersion, dct:replaces, dct:isReplacedBy, dct:references, dct:isReferencedBy, dct:requires, dct:isRequiredBy) či slovníku PROV-O (prov:wasDerivedFrom, prov:wasInfluencedBy, prov:wasQuotedFrom, prov:wasRevisionOf, prov:hadPrimarySource, prov:alternateOf, prov:specializationOf). @cs
scope note: Se usa para asociar con otro recurso para el cuál la naturaleza de la relación es conocida pero no es ninguna de las propiedades que provee el estándar Dublin Core (dct:hasPart, dct:isPartOf, dct:conformsTo, dct:isFormatOf, dct:hasFormat, dct:isVersionOf, dct:hasVersion, dct:replaces, dct:isReplacedBy, dct:references, dct:isReferencedBy, dct:requires, dct:isRequiredBy) or PROV-O properties (prov:wasDerivedFrom, prov:wasInfluencedBy, prov:wasQuotedFrom, prov:wasRevisionOf, prov:hadPrimarySource, prov:alternateOf, prov:specializationOf). @es
scope note: Used to link to another resource where the nature of the relationship is known but does not match one of the standard Dublin Core properties (dct:hasPart, dct:isPartOf, dct:conformsTo, dct:isFormatOf, dct:hasFormat, dct:isVersionOf, dct:hasVersion, dct:replaces, dct:isReplacedBy, dct:references, dct:isReferencedBy, dct:requires, dct:isRequiredBy) or PROV-O properties (prov:wasDerivedFrom, prov:wasInfluencedBy, prov:wasQuotedFrom, prov:wasRevisionOf, prov:hadPrimarySource, prov:alternateOf, prov:specializationOf).
scope note: Viene utilizzato per associarsi a un'altra risorsa nei casi per i quali la natura della relazione è nota ma non è alcuna delle proprietà fornite dallo standard Dublin Core (dct:hasPart, dct:isPartOf, dct:conformsTo, dct:isFormatOf, dct:hasFormat , dct:isVersionOf, dct:hasVersion, dct:replaces, dct:isReplacedBy, dct:references, dct:isReferencedBy, dct:require, dct:isRequiredBy) o dalle proprietà fornite da PROV-O (prov:wasDerivedFrom, prov:wasInfluencedBy, prov:wasQuotedFrom , prov:wasRevisionOf, prov:hadPrimarySource, prov:alternateOf, prov:specializationOf). @it

record
type: ObjectProperty
comment: A record describing the registration of a single dataset or data service that is part of the catalog.
comment: Describe la registración de un conjunto de datos o un servicio de datos en el catálogo. @es
comment: En post der beskriver registreringen af et enkelt datasæt eller en datatjeneste som er opført i kataloget. @da
comment: Propojuje katalog a jeho záznamy. @cs
comment: Relie un catalogue à ses registres. @fr
comment: Un record che descrive la registrazione di un singolo set di dati o di un servizio dati che fa parte del catalogo. @it
comment: Záznam popisující registraci jedné datové sady či datové služby jakožto součásti katalogu. @cs
comment: Συνδέει έναν κατάλογο με τις καταγραφές του. @el
comment: تربط الفهرس بسجل ضمنه @ar
comment: カタログの一部であるカタログ・レコード。 @ja
label: post @da
label: registre @fr
label: registro @es
label: záznam @cs
label: καταγραφή @el
label: سجل @ar
label: カタログ・レコード @ja
alternative label: har post @da
editorial note: Status: English, Italian, Spanish and Czech Definitions modified by DCAT revision team, other translations pending.

serves dataset
type: ObjectProperty
comment: A collection of data that this DataService can distribute.
comment: En samling af data som denne datatjeneste kan distribuere. @da
comment: Kolekce dat, kterou je tato Datová služba schopna poskytnout. @cs
comment: Una colección de datos que este Servicio de Datos puede distribuir. @es
comment: Una raccolta di dati che questo DataService può distribuire. @it
label: datatjeneste for datasæt @da
label: poskytuje datovou sadu @cs
label: provee conjunto de datos @es
label: serve set di dati @it
alternative label: distribuerer @da
alternative label: ekspederer @da
alternative label: udstiller @da
change note: New property in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà in DCAT 2.0. @it

service
type: ObjectProperty
comment: A site or endpoint that is listed in the catalog.
comment: Et websted eller et endpoint som er opført i kataloget. @da
comment: Umístění či přístupový bod registrovaný v katalogu. @cs
comment: Un sitio o 'endpoint' que está listado en el catálogo. @es
comment: Un sito o endpoint elencato nel catalogo. @it
label: datatjeneste @da
label: servicio @es
label: servizio @it
label: služba @cs
alternative label: har datatjeneste @da
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad añadida en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it

theme
type: ObjectProperty
comment: A main category of the resource. A resource can have multiple themes.
comment: Et centralt emne for ressourcen. En ressource kan have flere centrale emner. @da
comment: Hlavní téma zdroje. Zdroj může mít více témat. @cs
comment: La categoria principale della risorsa. Una risorsa può avere più temi. @it
comment: La categoría principal del recurso. Un recurso puede tener varios temas. @es
comment: La catégorie principale de la ressource. Une ressource peut avoir plusieurs thèmes. @fr
comment: Η κύρια κατηγορία του συνόλου δεδομένων. Ένα σύνολο δεδομένων δύναται να έχει πολλαπλά θέματα. @el
comment: التصنيف الرئيسي لقائمة البيانات. قائمة البيانات يمكن أن تملك أكثر من تصنيف رئيسي واحد. @ar
comment: データセットの主要カテゴリー。データセットは複数のテーマを持つことができます。 @ja
label: emne @da
label: tema @es
label: thème @fr
label: téma @cs
label: Θέμα @el
label: التصنيف @ar
label: テーマ/カテゴリー @ja
editorial note: Status: English Definition text modified by DCAT revision team, all except for Italian and Czech translations are pending.
scope note: El conjunto de skos:Concepts utilizados para categorizar los recursos están organizados en un skos:ConceptScheme que describe todas las categorías y sus relaciones en el catálogo. @es
scope note: Il set di concetti skos usati per categorizzare le risorse sono organizzati in skos:ConceptScheme che descrive tutte le categorie e le loro relazioni nel catalogo. @it
scope note: Sada instancí třídy skos:Concept použitá pro kategorizaci zdrojů je organizována do schématu konceptů skos:ConceptScheme, které popisuje všechny kategorie v katalogu a jejich vztahy. @cs
scope note: Samlingen af begreber (skos:Concept) der anvendes til at emneinddele ressourcer organiseres i et begrebssystem (skos:ConceptScheme) som beskriver alle emnerne og deres relationer i kataloget. @da
scope note: The set of skos:Concepts used to categorize the resources are organized in a skos:ConceptScheme describing all the categories and their relations in the catalog.
scope note: Un ensemble de skos:Concepts utilisés pour catégoriser les ressources sont organisés en un skos:ConceptScheme décrivant toutes les catégories et ses relations dans le catalogue. @fr
scope note: Το σετ των skos:Concepts που χρησιμοποιείται για να κατηγοριοποιήσει τα σύνολα δεδομένων είναι οργανωμένο εντός ενός skos:ConceptScheme που περιγράφει όλες τις κατηγορίες και τις σχέσεις αυτών στον κατάλογο. @el
scope note: データセットを分類するために用いられるskos:Conceptの集合は、カタログのすべてのカテゴリーとそれらの関係を記述しているskos:ConceptSchemeで組織化されます。 @ja

theme taxonomy
type: ObjectProperty
range includes: Ontology
range includes: Collection
range includes: ConceptScheme
comment: El sistema de organización del conocimiento utilizado para clasificar conjuntos de datos de catálogos. @es
comment: Il sistema di organizzazione della conoscenza (KOS) usato per classificare i dataset del catalogo. @it
comment: Le systhème d'ogranisation de connaissances utilisé pour classifier les jeux de données du catalogue. @fr
comment: Systém organizace znalostí (KOS) použitý pro klasifikaci datových sad v katalogu. @cs
comment: The knowledge organization system (KOS) used to classify catalog's datasets.
comment: Vidensorganiseringssystem (KOS) som anvendes til at klassificere datasæt i kataloget. @da
comment: Το σύστημα οργάνωσης γνώσης που χρησιμοποιείται για την κατηγοριοποίηση των συνόλων δεδομένων του καταλόγου. @el
comment: لائحة التصنيفات المستخدمه لتصنيف قوائم البيانات ضمن الفهرس @ar
comment: カタログのデータセットを分類するために用いられる知識組織化体系（KOS；knowledge organization system）。 @ja
label: emnetaksonomi @da
label: tassonomia dei temi @it
label: taxonomie de thèmes @fr
label: taxonomie témat @cs
label: taxonomía de temas @es
label: Ταξινομία θεματικών κατηγοριών. @el
label: قائمة التصنيفات @ar
label: テーマ @ja
alternative label: temataksonomi @da
scope note: Det anbefales at taksonomien organiseres i et skos:ConceptScheme, skos:Collection, owl:Ontology eller lignende, som giver mulighed for at ethvert medlem af taksonomien kan forsynes med en IRI og udgives som linked-data. @da
scope note: It is recommended that the taxonomy is organized in a skos:ConceptScheme, skos:Collection, owl:Ontology or similar, which allows each member to be denoted by an IRI and published as linked-data.
scope note: Je doporučeno, aby byla taxonomie vyjádřena jako skos:ConceptScheme, skos:Collection, owl:Ontology nebo podobné, aby mohla být každá položka identifikována pomocí IRI a publikována jako propojená data. @cs
scope note: Se recomienda que la taxonomía se organice como un skos:ConceptScheme, skos:Collection, owl:Ontology o similar, los cuáles permiten que cada miembro se denote con una IRI y se publique como datos enlazados. @es
scope note: Si raccomanda che la tassonomia sia organizzata in uno skos:ConceptScheme, skos:Collection, owl:Ontology o simili, che permette ad ogni membro di essere indicato da un IRI e pubblicato come linked-data. @it

primaryTopic
type: ObjectProperty
comment: This axiom needed so that Protege loads DCAT2 without errors.

accelerationTime
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The time needed to accelerate the vehicle from a given start velocity to a given target velocity. Typical unit code(s): SEC for seconds Note: There are unfortunately no standard unit codes for seconds/0..100 km/h or seconds/0..60 mph. Simply use "SEC" for seconds and indicate the velocities in the name of the QuantitativeValue, or use valueReference with a QuantitativeValue of 0..60 mph or 0..100 km/h to specify the reference speeds.

acrissCode
type: ObjectProperty
domain: Class
  union of: BusOrCoach
  union of: Car
comment: The ACRISS Car Classification Code is a code used by many car rental companies, for classifying vehicles. ACRISS stands for Association of Car Rental Industry Systems and Standards.

activityDuration
type: ObjectProperty
domain: Class
  union of: ExercisePlan
comment: Length of time to engage in the activity.

activityFrequency
type: ObjectProperty
domain: Class
  union of: ExercisePlan
comment: How often one should engage in the activity.

additionalVariable
type: ObjectProperty
domain: Class
  union of: ExercisePlan
comment: Any additional component of the exercise prescription that may need to be articulated to the patient. This may include the order of exercises, the number of repetitions of movement, quantitative distance, progressions over time, etc.

administrationRoute
type: ObjectProperty
domain: Class
  union of: Drug
comment: A route by which this drug may be administered, e.g. 'oral'.

alcoholWarning
type: ObjectProperty
domain: Class
  union of: Drug
comment: Any precaution, guidance, contraindication, etc. related to consumption of alcohol while taking this drug.

algorithm
type: ObjectProperty
domain: Class
  union of: MedicalRiskScore
comment: The algorithm or rules to follow to compute the score.

availableStrength
type: ObjectProperty
domain: Class
  union of: Drug
comment: An available dosage strength for the drug.

bodyType
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: Indicates the design and body style of the vehicle (e.g. station wagon, hatchback, etc.).

breastfeedingWarning
type: ObjectProperty
domain: Class
  union of: Drug
comment: Any precaution, guidance, contraindication, etc. related to this drug's use by breastfeeding mothers.

cargoVolume
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The available volume for cargo or luggage. For automobiles, this is usually the trunk volume. Typical unit code(s): LTR for liters, FTQ for cubic foot/feet Note: You can use minValue and maxValue to indicate ranges.

catalog
type: ObjectProperty
domain: Class
  union of: Dataset
comment: A data catalog which contains this dataset.

characterName
type: ObjectProperty
domain: Class
  union of: PerformanceRole
comment: The name of a character played in some acting or performing role, i.e. in a PerformanceRole.

clincalPharmacology
type: ObjectProperty
domain: Class
  union of: Drug
comment: Description of the absorption and elimination of drugs, including their concentration (pharmacokinetics, pK) and biological effects (pharmacodynamics, pD).

clinicalPharmacology
type: ObjectProperty
domain: Class
  union of: Drug
comment: Description of the absorption and elimination of drugs, including their concentration (pharmacokinetics, pK) and biological effects (pharmacodynamics, pD).

dataFeedElement
type: ObjectProperty
domain: Class
  union of: DataFeed
comment: An item within a data feed. Data feeds may have many elements.

dataset
type: ObjectProperty
inverse of: includedInDataCatalog
comment: A dataset contained in this catalog.

datasetTimeInterval
type: ObjectProperty
domain: Class
  union of: Dataset
comment: The range of temporal applicability of a dataset, e.g. for a 2011 census dataset, the year 2011 (in ISO 8601 time interval format).

dateVehicleFirstRegistered
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The date of the first registration of the vehicle with the respective public authorities.

distribution
type: ObjectProperty
domain: Class
  union of: Dataset
comment: A downloadable form of this dataset, at a specific location, in a specific format. This property can be repeated if different variations are available. There is no expectation that different downloadable distributions must contain exactly equivalent information (see also DCAT on this point). Different distributions might include or exclude different subsets of the entire dataset, for example.

dosageForm
type: ObjectProperty
domain: Class
  union of: Drug
comment: A dosage form in which this drug/supplement is available, e.g. 'tablet', 'suspension', 'injection'.

driveWheelConfiguration
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The drive wheel configuration, i.e. which roadwheels will receive torque from the vehicle's engine via the drivetrain.

drugClass
type: ObjectProperty
domain: Class
  union of: Drug
comment: The class of drug this belongs to (e.g., statins).

emissionsCO2
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The CO2 emissions in g/km. When used in combination with a QuantitativeValue, put "g/km" into the unitText property of that value, since there is no UN/CEFACT Common Code for "g/km".

foodWarning
type: ObjectProperty
domain: Class
  union of: Drug
comment: Any precaution, guidance, contraindication, etc. related to consumption of specific foods while taking this drug.

fuelCapacity
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The capacity of the fuel tank or in the case of electric cars, the battery. If there are multiple components for storage, this should indicate the total of all storage of the same type. Typical unit code(s): LTR for liters, GLL of US gallons, GLI for UK / imperial gallons, AMH for ampere-hours (for electrical vehicles).

fuelConsumption
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The amount of fuel consumed for traveling a particular distance or temporal duration with the given vehicle (e.g. liters per 100 km). Note 1: There are unfortunately no standard unit codes for liters per 100 km. Use unitText to indicate the unit of measurement, e.g. L/100 km. Note 2: There are two ways of indicating the fuel consumption, fuelConsumption (e.g. 8 liters per 100 km) and fuelEfficiency (e.g. 30 miles per gallon). They are reciprocal. Note 3: Often, the absolute value is useful only when related to driving speed ("at 80 km/h") or usage pattern ("city traffic"). You can use valueReference to link the value for the fuel consumption to another value.

fuelEfficiency
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The distance traveled per unit of fuel used; most commonly miles per gallon (mpg) or kilometers per liter (km/L). Note 1: There are unfortunately no standard unit codes for miles per gallon or kilometers per liter. Use unitText to indicate the unit of measurement, e.g. mpg or km/L. Note 2: There are two ways of indicating the fuel consumption, fuelConsumption (e.g. 8 liters per 100 km) and fuelEfficiency (e.g. 30 miles per gallon). They are reciprocal. Note 3: Often, the absolute value is useful only when related to driving speed ("at 80 km/h") or usage pattern ("city traffic"). You can use valueReference to link the value for the fuel economy to another value.

hospitalAffiliation
type: ObjectProperty
domain: Class
  union of: Physician
comment: A hospital with which the physician or office is affiliated.

includedDataCatalog
type: ObjectProperty
domain: Class
  union of: Dataset
comment: A data catalog which contains this dataset (this property was previously 'catalog', preferred name is now 'includedInDataCatalog').

includedInDataCatalog
type: ObjectProperty
domain: Class
  union of: Dataset
comment: A data catalog which contains this dataset.

includedInHealthInsurancePlan
type: ObjectProperty
domain: Class
  union of: Drug
comment: The insurance plans that cover this drug.

intensity
type: ObjectProperty
domain: Class
  union of: ExercisePlan
comment: Quantitative measure gauging the degree of force involved in the exercise, for example, heartbeats per minute. May include the velocity of the movement.

interactingDrug
type: ObjectProperty
domain: Class
  union of: Drug
comment: Another drug that is known to interact with this drug in a way that impacts the effect of this drug or causes a risk to the patient. Note: disease interactions are typically captured as contraindications.

isAvailableGenerically
type: ObjectProperty
domain: Class
  union of: Drug
comment: True if the drug is available in a generic form (regardless of name).

knownVehicleDamages
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: A textual description of known damages, both repaired and unrepaired.

labelDetails
type: ObjectProperty
domain: Class
  union of: Drug
comment: Link to the drug's label details.

linkRelationship
type: ObjectProperty
domain: Class
  union of: LinkRole
comment: Indicates the relationship type of a Web link.

meetsEmissionStandard
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: Indicates that the vehicle meets the respective emission standard.

mileageFromOdometer
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The total distance travelled by the particular vehicle since its initial production, as read from its odometer. Typical unit code(s): KMT for kilometers, SMI for statute miles

modelDate
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The release date of a vehicle model (often used to differentiate versions of the same make and model).

namedPosition
type: ObjectProperty
domain: Class
  union of: Role
comment: A position played, performed or filled by a person or organization, as part of an organization. For example, an athlete in a SportsTeam might play in the position named 'Quarterback'.

numberOfAirbags
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The number or type of airbags in the vehicle.

numberOfAxles
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The number of axles. Typical unit code(s): C62

numberOfDoors
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The number of doors. Typical unit code(s): C62

numberOfForwardGears
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The total number of forward gears available for the transmission system of the vehicle. Typical unit code(s): C62

numberOfPreviousOwners
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The number of owners of the vehicle, including the current one. Typical unit code(s): C62

numberedPosition
type: ObjectProperty
domain: Class
  union of: OrganizationRole
comment: A number associated with a role in an organization, for example, the number on an athlete's jersey.

originatesFrom
type: ObjectProperty
domain: Class
  union of: LymphaticVessel
comment: The vasculature the lymphatic structure originates, or afferents, from.

overdosage
type: ObjectProperty
domain: Class
  union of: Drug
comment: Any information related to overdose on a drug, including signs or symptoms, treatments, contact information for emergency response.

payload
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The permitted weight of passengers and cargo, EXCLUDING the weight of the empty vehicle. Typical unit code(s): KGM for kilogram, LBR for pound Note 1: Many databases specify the permitted TOTAL weight instead, which is the sum of weight and payload Note 2: You can indicate additional information in the name of the QuantitativeValue node. Note 3: You may also link to a QualitativeValue node that provides additional information using valueReference. Note 4: Note that you can use minValue and maxValue to indicate ranges.

pregnancyCategory
type: ObjectProperty
domain: Class
  union of: Drug
comment: Pregnancy category of this drug.

pregnancyWarning
type: ObjectProperty
domain: Class
  union of: Drug
comment: Any precaution, guidance, contraindication, etc. related to this drug's use during pregnancy.

prescribingInfo
type: ObjectProperty
domain: Class
  union of: Drug
comment: Link to prescribing information for the drug.

prescriptionStatus
type: ObjectProperty
domain: Class
  union of: Drug
comment: Indicates the status of drug prescription, e.g. local catalogs classifications or whether the drug is available by prescription or over-the-counter, etc.

recommendationStrength
type: ObjectProperty
domain: Class
  union of: MedicalGuidelineRecommendation
comment: Strength of the guideline's recommendation (e.g. 'class I').

relatedDrug
type: ObjectProperty
domain: Class
  union of: Drug
comment: Any other drug related to this one, for example commonly-prescribed alternatives.

repetitions
type: ObjectProperty
domain: Class
  union of: ExercisePlan
comment: Number of times one should repeat the activity.

restPeriods
type: ObjectProperty
domain: Class
  union of: ExercisePlan
comment: How often one should break from the activity.

roleName
type: ObjectProperty
domain: Class
  union of: Role
comment: A role played, performed or filled by a person or organization. For example, the team of creators for a comic book might fill the roles named 'inker', 'penciller', and 'letterer'; or an athlete in a SportsTeam might play in the position named 'Quarterback'.

roofLoad
type: ObjectProperty
domain: Class
  union of: BusOrCoach
  union of: Car
comment: The permitted total weight of cargo and installations (e.g. a roof rack) on top of the vehicle. Typical unit code(s): KGM for kilogram, LBR for pound Note 1: You can indicate additional information in the name of the QuantitativeValue node. Note 2: You may also link to a QualitativeValue node that provides additional information using valueReference Note 3: Note that you can use minValue and maxValue to indicate ranges.

runsTo
type: ObjectProperty
domain: Class
  union of: LymphaticVessel
comment: The vasculature the lymphatic structure runs, or efferents, to.

rxcui
type: ObjectProperty
domain: Class
  union of: Drug
comment: The RxCUI drug identifier from RXNORM.

seatingCapacity
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The number of persons that can be seated (e.g. in a vehicle), both in terms of the physical space available, and in terms of limitations set by law. Typical unit code(s): C62 for persons

speed
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The speed range of the vehicle. If the vehicle is powered by an engine, the upper limit of the speed range (indicated by maxValue) should be the maximum speed achievable under regular conditions. Typical unit code(s): KMH for km/h, HM for mile per hour (0.447 04 m/s), KNT for knot *Note 1: Use minValue and maxValue to indicate the range. Typically, the minimal value is zero. * Note 2: There are many different ways of measuring the speed range. You can link to information about how the given value has been determined using the valueReference property.

steeringPosition
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The position of the steering wheel or similar device (mostly for cars).

studyDesign
type: ObjectProperty
domain: Class
  union of: MedicalObservationalStudy
comment: Specifics about the observational study design (enumerated).

tissueSample
type: ObjectProperty
domain: Class
  union of: PathologyTest
comment: The type of tissue sample required for the test.

tongueWeight
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The permitted vertical load (TWR) of a trailer attached to the vehicle. Also referred to as Tongue Load Rating (TLR) or Vertical Load Rating (VLR). Typical unit code(s): KGM for kilogram, LBR for pound Note 1: You can indicate additional information in the name of the QuantitativeValue node. Note 2: You may also link to a QualitativeValue node that provides additional information using valueReference. Note 3: Note that you can use minValue and maxValue to indicate ranges.

trailerWeight
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The permitted weight of a trailer attached to the vehicle. Typical unit code(s): KGM for kilogram, LBR for pound * Note 1: You can indicate additional information in the name of the QuantitativeValue node. * Note 2: You may also link to a QualitativeValue node that provides additional information using valueReference. * Note 3: Note that you can use minValue and maxValue to indicate ranges.

variableMeasured
type: ObjectProperty
domain: Class
  union of: Dataset
comment: The variableMeasured property can indicate (repeated as necessary) the variables that are measured in some dataset, either described as text or as pairs of identifier and description using PropertyValue.

variablesMeasured
type: ObjectProperty
domain: Class
  union of: Dataset
comment: Originally named variablesMeasured, the variableMeasured property can indicate (repeated as necessary) the variables that are measured in some dataset, either described as text or as pairs of identifier and description using PropertyValue.

vehicleConfiguration
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: A short text indicating the configuration of the vehicle, e.g. '5dr hatchback ST 2.5 MT 225 hp' or 'limited edition'.

vehicleEngine
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: Information about the engine or engines of the vehicle.

vehicleIdentificationNumber
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The Vehicle Identification Number (VIN) is a unique serial number used by the automotive industry to identify individual motor vehicles.

vehicleInteriorColor
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The color or color combination of the interior of the vehicle.

vehicleInteriorType
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The type or material of the interior of the vehicle (e.g. synthetic fabric, leather, wood, etc.). While most interior types are characterized by the material used, an interior type can also be based on vehicle usage or target audience.

vehicleModelDate
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The release date of a vehicle model (often used to differentiate versions of the same make and model).

vehicleSeatingCapacity
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The number of passengers that can be seated in the vehicle, both in terms of the physical space available, and in terms of limitations set by law. Typical unit code(s): C62 for persons.

vehicleSpecialUsage
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: Indicates whether the vehicle has been used for special purposes, like commercial rental, driving school, or as a taxi. The legislation in many countries requires this information to be revealed when offering a car for sale.

vehicleTransmission
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The type of component used for transmitting the power from a rotating power source to the wheels or other relevant component(s) ("gearbox" for cars).

warning
type: ObjectProperty
domain: Class
  union of: Drug
comment: Any FDA or other warnings about the drug (text or URL).

weightTotal
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The permitted total weight of the loaded vehicle, including passengers and cargo and the weight of the empty vehicle. Typical unit code(s): KGM for kilogram, LBR for pound Note 1: You can indicate additional information in the name of the QuantitativeValue node. Note 2: You may also link to a QualitativeValue node that provides additional information using valueReference. Note 3: Note that you can use minValue and maxValue to indicate ranges.

wheelbase
type: ObjectProperty
domain: Class
  union of: Vehicle
comment: The distance between the centers of the front and rear wheels. Typical unit code(s): CMT for centimeters, MTR for meters, INH for inches, FOT for foot/feet

workload
type: ObjectProperty
domain: Class
  union of: ExercisePlan
comment: Quantitative measure of the physiologic output of the exercise; also referred to as energy expenditure.

has_string
type: DatatypeProperty
domain: biological sequence
range: string
definition: Property linking a biological sequence to a string representing the ordered units that comprise the sequence (e.g. 'atgcagctagctaccgtcgatcg').

has_member_count
type: DatatypeProperty
definition: Describes the number of members in some set.
alternative term: has_count
comment: In GENO, this is used to describe things like the number of sequence features comprising a 'sequence feature set', the number of sequences in a 'biological sequence set', or the number of functional sequences defining a particular 'functional copy number complement'.

has measurement value
type: DatatypeProperty
type: FunctionalProperty
domain: IAO_0000032
range: double

has specified numeric value
type: DatatypeProperty
sub property of: has specified value
domain: OBI_0001933
range: real
editor preferred label: has specified numeric value
IAO_0000114: IAO_0000120
definition: A relation between a value specification and a number that quantifies it.
editor note: A range of 'real' might be better than 'float'. For now we follow 'has measurement value' until we can consider technical issues with SPARQL queries and reasoning.
term editor: PERSON: James A. Overton
definition source: OBI

has specified value
type: DatatypeProperty
domain: OBI_0001933
editor preferred label: has specified value
IAO_0000114: IAO_0000123
definition: A relation between a value specification and a literal.
editor note: This is not an RDF/OWL object property. It is intended to link a value found in e.g. a database column of 'M' (the literal) to an instance of a value specification class, which can then be linked to indicate that this is about the biological gender of a human subject.
definition source: OBI

mass number
type: DatatypeProperty
domain: RBO_00005001
range: nonNegativeInteger

dataset catalog id
type: DatatypeProperty
domain: SLSO_0000021
definition: This alphanumeric string is generated at data acquisition, and is used to uniquely identify the dataset.
term editor: NASA Life Sciences Portal
Label in NLSP: Dataset Catalog
NLSP field name: dataset_catalog

Axiom
annotated source: dataset catalog id
annotated property: definition
annotated target: This alphanumeric string is generated at data acquisition, and is used to uniquely identify the dataset.
definition source: https://github.com/nasa/LSDAO

subject id
type: DatatypeProperty
domain: SLSO_0000034
definition: ALSDA subject ID: Unique numeric identifier of a group to which the subject belongs. Examples of subject groups (Flight/Ground Control/Basal)
term editor: NASA Life Sciences Portal
Label in NLSP: From Subject Number
SLIMS Label: ALSDA Subject ID
NLSP field name: subject_id

Axiom
annotated source: subject id
annotated property: definition
annotated target: ALSDA subject ID: Unique numeric identifier of a group to which the subject belongs. Examples of subject groups (Flight/Ground Control/Basal)
definition source: https://github.com/nasa/LSDAO

bio ID
type: DatatypeProperty
domain: SLSO_0000033
definition: The UID assigned by NBISC and used in the Ames Life Science Data Archive
term editor: NASA Life Sciences Portal
Label in NLSP: Bio ID
SLIMS Label: ALSDA Biospecimen ID
NLSP field name: bio_id

Axiom
annotated source: bio ID
annotated property: definition
annotated target: The UID assigned by NBISC and used in the Ames Life Science Data Archive
definition source: https://github.com/nasa/LSDAO

document number
type: DatatypeProperty
domain: SLSO_0000028
definition: Original document number assigned by the JSC or ARC project, mission level offices, or headquarters level offices. For publication citations only, this is a number generated by the SQL database.
term editor: NASA Life Sciences Portal
Label in NLSP: Document Number
NLSP field name: document_number

Axiom
annotated source: document number
annotated property: definition
annotated target: Original document number assigned by the JSC or ARC project, mission level offices, or headquarters level offices. For publication citations only, this is a number generated by the SQL database.
definition source: https://github.com/nasa/LSDAO

biospecimen category
type: DatatypeProperty
domain: SLSO_0000033
definition: Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function.
term editor: NASA Life Sciences Portal
Label in NLSP: Biospecimen Category
SLIMS Label: Biospecimen Category
NLSP field name: category

Axiom
annotated source: biospecimen category
annotated property: definition
annotated target: Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function.
definition source: equivalent or subproperty of http://purl.obolibrary.org/obo/UBERON_0000467

release date
type: DatatypeProperty
domain: SLSO_0000021
definition: Date when data are released (usually by the PI) to the archive, or released to go on the public Website.
term editor: NASA Life Sciences Portal
Label in NLSP: Release Date
NLSP field name: release_date

Axiom
annotated source: release date
annotated property: definition
annotated target: Date when data are released (usually by the PI) to the archive, or released to go on the public Website.
definition source: https://github.com/nasa/LSDAO

duration
type: DatatypeProperty
domain: SLSO_0000038
definition: Magnitude of the temporal extent between the start of mission operations and the end of mission operations
term editor: NASA Life Sciences Portal
Label in NLSP: Duration
NLSP field name: duration

Axiom
annotated source: duration
annotated property: definition
annotated target: Magnitude of the temporal extent between the start of mission operations and the end of mission operations
definition source: Specified from the definition of http://purl.obolibrary.org/obo/PATO_0001309

alternate experiment name
type: DatatypeProperty
domain: SLSO_0000022
definition: A short title assigned to the study
term editor: NASA Life Sciences Portal
Label in NLSP: Alternate Experiment Name(s)
NLSP field name: experiment_alias

Axiom
annotated source: alternate experiment name
annotated property: definition
annotated target: A short title assigned to the study
definition source: https://github.com/nasa/LSDAO

keyword
type: DatatypeProperty
domain: SLSO_0000044
term editor: NASA Life Sciences Portal

dataset availability
type: DatatypeProperty
domain: SLSO_0000021
definition: This value denotes whether a dataset is available for download on the public site. Datasets are either available for download on-line, or available off-line in hardcopy form.
term editor: NASA Life Sciences Portal
Label in NLSP: Dataset Availability
NLSP field name: dataset availability
has synonym: Available; Availability

Axiom
annotated source: dataset availability
annotated property: definition
annotated target: This value denotes whether a dataset is available for download on the public site. Datasets are either available for download on-line, or available off-line in hardcopy form.
definition source: https://github.com/nasa/LSDAO

last name
type: DatatypeProperty
domain: SLSO_0000031
definition: The family name associated with the object
term editor: NASA Life Sciences Portal
Label in NLSP: Last Name
NLSP field name: lname

Axiom
annotated source: last name
annotated property: definition
annotated target: The family name associated with the object
definition source: owl:equivalentProperty IRI: http://www.w3.org/2006/vcard/ns#family-name

Taxon
type: DatatypeProperty
domain: SLSO_0000034
definition: Phylogenetic classification of the subject or biospecimen host. Examples include: Homo sapiens, Mus musculus
term editor: NASA Life Sciences Portal
Label in NLSP: Subject Science Name
SLIMS Label: Type
NLSP field name: subject_sci_name

Axiom
annotated source: Taxon
annotated property: definition
annotated target: Phylogenetic classification of the subject or biospecimen host. Examples include: Homo sapiens, Mus musculus
definition source: https://github.com/nasa/LSDAO

Common name
type: DatatypeProperty
domain: SLSO_0000034
definition: A textual entity refers to a taxon or organism that is based on the normal language of everyday life; this kind of name is often contrasted with the scientific name for the same organism, which is Latinized.
term editor: NASA Life Sciences Portal
Label in NLSP: Subject Species
SLIMS Label: Common name
NLSP field name: subject_species

Axiom
annotated source: Common name
annotated property: definition
annotated target: A textual entity refers to a taxon or organism that is based on the normal language of everyday life; this kind of name is often contrasted with the scientific name for the same organism, which is Latinized.
definition source: http://purl.obolibrary.org/obo/OBI_0003074

document title
type: DatatypeProperty
domain: SLSO_0000028
definition: Typically, a Title will be a name by which the resource is formally known. cf IAO:0000305 document title as a class
term editor: NASA Life Sciences Portal
Label in NLSP: Document Title
NLSP field name: document_title

Axiom
annotated source: document title
annotated property: definition
annotated target: Typically, a Title will be a name by which the resource is formally known. cf IAO:0000305 document title as a class
definition source: equiv to http://purl.org/dc/elements/1.1/title

session type
type: DatatypeProperty
domain: SLSO_0000033
definition: Experimental group that a subject belongs to (fixed choice: F, B, GC, V, etc.)
term editor: NASA Life Sciences Portal
Label in NLSP: Session Type
SLIMS Label: Experimental Group
NLSP field name: session_type

Axiom
annotated source: session type
annotated property: definition
annotated target: Experimental group that a subject belongs to (fixed choice: F, B, GC, V, etc.)
definition source: https://github.com/nasa/LSDAO

hardware description
type: DatatypeProperty
domain: SLSO_0000037
term editor: NASA Life Sciences Portal
NLSP field name: hardware_description

proposal source
type: DatatypeProperty
domain: SLSO_0000022
definition: Identifier for NASA's research announcements or other "calls for proposals" (i.e. AO, NRA, etc.) soliciting the experiment
term editor: NASA Life Sciences Portal
Label in NLSP: Proposal Source
NLSP field name: proposal_source

Axiom
annotated source: proposal source
annotated property: definition
annotated target: Identifier for NASA's research announcements or other "calls for proposals" (i.e. AO, NRA, etc.) soliciting the experiment
definition source: https://github.com/nasa/LSDAO

mission id
type: DatatypeProperty
domain: SLSO_0000038
term editor: NASA Life Sciences Portal
Label in NLSP: Mission ID
NLSP field name: mission_id

experiment type
type: DatatypeProperty
domain: SLSO_0000022
definition: This field refers to the NASA classification of the experiment, in terms of the type of research project it originated from and/or is currently under (i.e AG, LSAH, CEVP), the type of payload or experiment it is, and/or the type of program it is related to.
term editor: NASA Life Sciences Portal
Label in NLSP: Experiment Type
NLSP field name: experiment_type_lk

Axiom
annotated source: experiment type
annotated property: definition
annotated target: This field refers to the NASA classification of the experiment, in terms of the type of research project it originated from and/or is currently under (i.e AG, LSAH, CEVP), the type of payload or experiment it is, and/or the type of program it is related to.
definition source: https://github.com/nasa/LSDAO

durationRange
type: DatatypeProperty
domain: SLSO_0000038
term editor: NASA Life Sciences Portal
Label in NLSP: duration range
NLSP field name: duration_range

experiment id
type: DatatypeProperty
domain: SLSO_0000022
definition: The unique identifier assigned to each study
term editor: NASA Life Sciences Portal
Label in NLSP: Experiment ID
NLSP field name: experiment_id

Axiom
annotated source: experiment id
annotated property: definition
annotated target: The unique identifier assigned to each study
definition source: http://purl.org/dc/terms/identifier

first name
type: DatatypeProperty
domain: SLSO_0000031
definition: The given name associated with the object
term editor: NASA Life Sciences Portal
Label in NLSP: First Name
NLSP field name: fname

Axiom
annotated source: first name
annotated property: definition
annotated target: The given name associated with the object
definition source: given name

description
type: DatatypeProperty
domain: SLSO_0000022
definition: A textual entity that specifies characteristics of some entity. cf. apollosv:00000476
term editor: NASA Life Sciences Portal

image id
type: DatatypeProperty
domain: SLSO_0000044
term editor: NASA Life Sciences Portal

biospecimen name
type: DatatypeProperty
domain: SLSO_0000033
definition: Indicates the material obtained from an organism in order to be a representative of the whole
term editor: NASA Life Sciences Portal
Label in NLSP: Biospecimen Name
SLIMS Label: Type
NLSP field name: bio_name

Axiom
annotated source: biospecimen name
annotated property: definition
annotated target: Indicates the material obtained from an organism in order to be a representative of the whole
definition source: http://purl.obolibrary.org/obo/OBI_0000671

institution name
type: DatatypeProperty
domain: SLSO_0000047
definition: A human-readable version of this object
editor note: synonymous with rdfs:label as applied to institution
term editor: NASA Life Sciences Portal

Axiom
annotated source: institution name
annotated property: definition
annotated target: A human-readable version of this object
definition source: rdfs label (see https://www.w3.org/TR/rdf-schema/#ch_label)

gender
type: DatatypeProperty
domain: SLSO_0000034
definition: An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics. cf. ExO:0000102 sex
term editor: NASA Life Sciences Portal
Label in NLSP: Gender
SLIMS Label: Sex
NLSP field name: gender

Axiom
annotated source: gender
annotated property: definition
annotated target: An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics. cf. ExO:0000102 sex
definition source: http://purl.obolibrary.org/obo/PATO_0001894

launch date
type: DatatypeProperty
domain: SLSO_0000038
term editor: NASA Life Sciences Portal
Label in NLSP: Launch Date
NLSP field name: land_date

per_id
type: DatatypeProperty
domain: SLSO_0000031
term editor: NASA Life Sciences Portal

payload title
type: DatatypeProperty
domain: SLSO_0000030
term editor: NASA Life Sciences Portal
NLSP field name: payload_title

experiment title
type: DatatypeProperty
domain: SLSO_0000022
definition: The official name given to a study - usually the same name used when responding to a solicitation
Label in NLSP: Experiment Title
NLSP field name: experiment_title

Axiom
annotated source: experiment title
annotated property: definition
annotated target: The official name given to a study - usually the same name used when responding to a solicitation
definition source: title

land date
type: DatatypeProperty
domain: SLSO_0000038
term editor: NASA Life Sciences Portal
Label in NLSP: Land Date
NLSP field name: launch_date

nasa center code
type: DatatypeProperty
domain: SLSO_0000026
term editor: NASA Life Sciences Portal
Label in NLSP: NASA Center Code
NLSP field name: nasa_center_code

document description
type: DatatypeProperty
domain: SLSO_0000028
definition: An account of the content of the resource.
term editor: NASA Life Sciences Portal
Label in NLSP: Document Description
NLSP field name: document_description

Axiom
annotated source: document description
annotated property: definition
annotated target: An account of the content of the resource.
definition source: equiv to http://purl.org/dc/terms/description

proposal date
type: DatatypeProperty
domain: SLSO_0000022
definition: The proposed and/or actual start date of the experiment.
term editor: NASA Life Sciences Portal
Label in NLSP: Proposal Date
NLSP field name: proposal_date

component name
type: DatatypeProperty
domain: SLSO_0000036
term editor: NASA Life Sciences Portal

configuration_description
type: DatatypeProperty
domain: SLSO_0000036
term editor: NASA Life Sciences Portal

hardware type
type: DatatypeProperty
domain: SLSO_0000037
term editor: NASA Life Sciences Portal
Label in NLSP: Hardware Type
NLSP field name: hardware_type

city
type: DatatypeProperty
domain: SLSO_0000031
definition: The city or town associated with the address of the object. cf. vcard:locality
term editor: NASA Life Sciences Portal

Axiom
annotated source: city
annotated property: definition
annotated target: The city or town associated with the address of the object. cf. vcard:locality
definition source: owl:equivalentProperty http://www.w3.org/2006/vcard/ns#locality

configuration name
type: DatatypeProperty
domain: SLSO_0000036
term editor: NASA Life Sciences Portal
NLSP field name: config_name

file thumbnail
type: DatatypeProperty
sub property of: NCIT C91820
domain: SLSO_0000024
definition: owl:equivalentProperty http://purl.obolibrary.org/obo/NCIT_C91820
term editor: NASA Life Sciences Portal

Axiom
annotated source: file thumbnail
annotated property: definition
annotated target: owl:equivalentProperty http://purl.obolibrary.org/obo/NCIT_C91820
definition source: A small image that is representative of a larger image file.

file name
type: DatatypeProperty
domain: SLSO_0000035
definition: The name (or part of a name) of a file (of any type)
term editor: NASA Life Sciences Portal
Label in NLSP: File Name
NLSP field name: file_name

Axiom
annotated source: file name
annotated property: definition
annotated target: The name (or part of a name) of a file (of any type)
definition source: owl:equivalentProperty http://edamontology.org/data_1050

keywords
type: DatatypeProperty
domain: SLSO_0000022
definition: These are the Medical Subject Headings (MeSH) terms assigned by LSDA archivists to the experiment.
term editor: NASA Life Sciences Portal
Label in NLSP: Keywords
NLSP field name: keywords

Axiom
annotated source: keywords
annotated property: definition
annotated target: These are the Medical Subject Headings (MeSH) terms assigned by LSDA archivists to the experiment.
definition source: https://github.com/nasa/LSDAO

middle name
type: DatatypeProperty
domain: SLSO_0000031
term editor: NASA Life Sciences Portal
Label in NLSP: Middle Name
NLSP field name: mname

review
type: DatatypeProperty
domain: SLSO_0000021
definition: Programmatic, or data acquisition or data quality information regarding this dataset.
term editor: NASA Life Sciences Portal
Label in NLSP: Dataset Review
NLSP field name: dataset_review

Axiom
annotated source: review
annotated property: definition
annotated target: Programmatic, or data acquisition or data quality information regarding this dataset.
definition source: https://github.com/nasa/LSDAO

tissue medium
type: DatatypeProperty
domain: SLSO_0000033
term editor: NASA Life Sciences Portal
Label in NLSP: Tissue Medium
NLSP field name: tissue_medium

container size
type: DatatypeProperty
domain: SLSO_0000033
definition: A device used to preserve and store specimen (fixed choice: 2ml cryotube, etc.).
term editor: NASA Life Sciences Portal
Label in NLSP: Container Size
SLIMS Label: Container size
NLSP field name: container_size

Axiom
annotated source: container size
annotated property: definition
annotated target: A device used to preserve and store specimen (fixed choice: 2ml cryotube, etc.).
definition source: http://purl.obolibrary.org/obo/OBI_0002088

biospecimen center
type: DatatypeProperty
domain: SLSO_0000033
definition: NASA center of the biospecimen
term editor: NASA Life Sciences Portal
Label in NLSP: Biospecimen Center
NLSP field name: center_data_entered

collection day
type: DatatypeProperty
domain: SLSO_0000033
definition: Date of euthanasia for animals. Can be the same day as dissection. Date of sample harvest for other type of experiments. .
term editor: NASA Life Sciences Portal
Label in NLSP: Collection Day
SLIMS Label: Date of euthanasia or sample collection
NLSP field name: CollectionDayDisplay

Axiom
annotated source: collection day
annotated property: definition
annotated target: Date of euthanasia for animals. Can be the same day as dissection. Date of sample harvest for other type of experiments. .
definition source: ttp://purl.obolibrary.org/obo/OBI_0002471

component image
type: DatatypeProperty
domain: SLSO_0000036
term editor: NASA Life Sciences Portal
Label in NLSP: Component Image

component image size
type: DatatypeProperty
domain: SLSO_0000036
term editor: NASA Life Sciences Portal
Label in NLSP: Component Image Size

data collection site
type: DatatypeProperty
domain: SLSO_0000021
definition: Physical location where the data was collected
term editor: NASA Life Sciences Portal
Label in NLSP: Data Collection Site
NLSP field name: DataCollectionSite

Axiom
annotated source: data collection site
annotated property: definition
annotated target: Physical location where the data was collected
definition source: https://github.com/nasa/LSDAO

protocol approach
type: DatatypeProperty
domain: SLSO_0000021
term editor: NASA Life Sciences Portal
Label in NLSP: Protocol/Approach
NLSP field name: protocol_approach

processing level
type: DatatypeProperty
domain: SLSO_0000021
term editor: NASA Life Sciences Portal
Label in NLSP: Processing Level
NLSP field name: ProcessingLevel

hardware_name
type: DatatypeProperty
domain: SLSO_0000021
definition: The mechanical equipment component used.
term editor: NASA Life Sciences Portal
Label in NLSP: Hardware Name
NLSP field name: hardware_name

Axiom
annotated source: hardware_name
annotated property: definition
annotated target: The mechanical equipment component used.
definition source: https://github.com/nasa/LSDAO

data source
type: DatatypeProperty
domain: SLSO_0000021
definition: Describes the information, in terms of the group responsible for collecting and/or providing the data.
term editor: NASA Life Sciences Portal
Label in NLSP: Data Source
NLSP field name: DataSource

Axiom
annotated source: data source
annotated property: definition
annotated target: Describes the information, in terms of the group responsible for collecting and/or providing the data.
definition source: https://github.com/nasa/LSDAO

dataset medium
type: DatatypeProperty
domain: SLSO_0000021
definition: The physical or digital form in which the data are available.
term editor: NASA Life Sciences Portal
Label in NLSP: Dataset Medium
NLSP field name: dataset_medium

Axiom
annotated source: dataset medium
annotated property: definition
annotated target: The physical or digital form in which the data are available.
definition source: https://github.com/nasa/LSDAO

creator
type: DatatypeProperty
domain: SLSO_0000028
definition: An entity responsible for making the resource.
term editor: NASA Life Sciences Portal
Label in NLSP: creator
NLSP field name: creator

Axiom
annotated source: creator
annotated property: definition
annotated target: An entity responsible for making the resource.
definition source: equiv to http://purl.org/dc/terms/creator

location (archive/request)
type: DatatypeProperty
domain: SLSO_0000028
definition: NASA center or other location where the document is archived; for hardcopy documents, this field also indicates where the document can be ordered
term editor: NASA Life Sciences Portal
Label in NLSP: location

Axiom
annotated source: location (archive/request)
annotated property: definition
annotated target: NASA center or other location where the document is archived; for hardcopy documents, this field also indicates where the document can be ordered
definition source: https://github.com/nasa/LSDAO

publication date
type: DatatypeProperty
domain: SLSO_0000028
definition: Date (often a range) that the resource will become or did become available.
term editor: NASA Life Sciences Portal
Label in NLSP: Publication Date
NLSP field name: publication_date

Axiom
annotated source: publication date
annotated property: definition
annotated target: Date (often a range) that the resource will become or did become available.
definition source: equiv to http://purl.org/dc/terms/available

type
type: DatatypeProperty
domain: SLSO_0000028
term editor: NASA Life Sciences Portal
Label in NLSP: Document Type
NLSP field name: type

document availability
type: DatatypeProperty
domain: SLSO_0000028
definition: Access restrictions for ordering/receiving the archived document.
term editor: NASA Life Sciences Portal
Label in NLSP: Document Availability
NLSP field name: document availability

Axiom
annotated source: document availability
annotated property: definition
annotated target: Access restrictions for ordering/receiving the archived document.
definition source: https://github.com/nasa/LSDAO

s3 file GUID
type: DatatypeProperty
domain: SLSO_0000028
term editor: NASA Life Sciences Portal
Label in NLSP: S3 File GUID
NLSP field name: __s3_file_guid

document filename
type: DatatypeProperty
domain: SLSO_0000028
definition: File name for document available for online.
term editor: NASA Life Sciences Portal
Label in NLSP: File name
NLSP field name: filename

Axiom
annotated source: document filename
annotated property: definition
annotated target: File name for document available for online.
definition source: https://github.com/nasa/LSDAO

data preservation status
type: DatatypeProperty
domain: SLSO_0000022
definition: Defines the progress toward completion of archiving an experiment record, or other status information
term editor: NASA Life Sciences Portal
Label in NLSP: Data Preservation Status
NLSP field name: archive_status

Axiom
annotated source: data preservation status
annotated property: definition
annotated target: Defines the progress toward completion of archiving an experiment record, or other status information
definition source: https://github.com/nasa/LSDAO

archiving NASA center
type: DatatypeProperty
domain: SLSO_0000022
definition: Designates the NASA center assigned to preserving and curating an experiment's data and metadata. Note that It is not necessarily the same as the managing center.
term editor: NASA Life Sciences Portal
Label in NLSP: Archiving NASA Center
NLSP field name: nasa_center

Axiom
annotated source: archiving NASA center
annotated property: definition
annotated target: Designates the NASA center assigned to preserving and curating an experiment's data and metadata. Note that It is not necessarily the same as the managing center.
definition source: https://github.com/nasa/LSDAO

agency
type: DatatypeProperty
domain: SLSO_0000022
definition: Indicates the agency that is funding (sponsoring) the experiment.
term editor: NASA Life Sciences Portal
Label in NLSP: agency
NLSP field name: agency

Axiom
annotated source: agency
annotated property: definition
annotated target: Indicates the agency that is funding (sponsoring) the experiment.
definition source: https://github.com/nasa/LSDAO

discipline
type: DatatypeProperty
domain: SLSO_0000022
term editor: NASA Life Sciences Portal
Label in NLSP: Discipline
NLSP field name: discipline

task solicitation
type: DatatypeProperty
domain: SLSO_0000022
definition: Designates the research announcement (aka NRA) under which the study was funded.
term editor: NASA Life Sciences Portal
Label in NLSP: Task Solicitation
NLSP field name: task_solicitation

species
type: DatatypeProperty
domain: SLSO_0000022
term editor: NASA Life Sciences Portal
Label in NLSP: Species
NLSP field name: species

parameter
type: DatatypeProperty
domain: SLSO_0000022
term editor: NASA Life Sciences Portal
Label in NLSP: Parameter(s)
NLSP field name: parameter_html

hardware alias
type: DatatypeProperty
domain: SLSO_0000038
term editor: NASA Life Sciences Portal
Label in NLSP: Hardware Alias
NLSP field name: hardware_alias

payload ID
type: DatatypeProperty
domain: SLSO_0000030
term editor: NASA Life Sciences Portal
Label in NLSP: Payload ID
NLSP field name: payload_id

image description
type: DatatypeProperty
domain: SLSO_0000024
term editor: NASA Life Sciences Portal
Label in NLSP: Image Description
NLSP field name: image_description

s3 file guid
type: DatatypeProperty
domain: SLSO_0000035
term editor: NASA Life Sciences Portal
Label in NLSP: S3 File GUID
NLSP field name: __s3_file_guid

image name
type: DatatypeProperty
domain: SLSO_0000024
term editor: NASA Life Sciences Portal
Label in NLSP: Image Name
NLSP field name: image_name

file extension
type: DatatypeProperty
domain: SLSO_0000035
term editor: NASA Life Sciences Portal
Label in NLSP: File Type
NLSP field name: _file_extension

file type
type: DatatypeProperty
domain: SLSO_0000035
term editor: NASA Life Sciences Portal

spacecraft or location
type: DatatypeProperty
domain: SLSO_0000038
definition: Provides general spatial information on the environment of the mission's activities. This includes vehicle namess, crewed or uncrewed, which are designed to orbit bout the Earth or another celestial body or be placed into a trajectory to another celestial body or location in space, satellites, space-analog ground facilities
term editor: NASA Life Sciences Portal
Label in NLSP: Spacecraft/Location
NLSP field name: spacecraft

Axiom
annotated source: spacecraft or location
annotated property: definition
annotated target: Provides general spatial information on the environment of the mission's activities. This includes vehicle namess, crewed or uncrewed, which are designed to orbit bout the Earth or another celestial body or be placed into a trajectory to another celestial body or location in space, satellites, space-analog ground facilities
definition source: https://github.com/nasa/LSDAO

strain
type: DatatypeProperty
domain: SLSO_0000034
definition: An organism that is bred to have some uniform behavioral, morphological, physiological, or genetic characteristics with similarly bred organisms
term editor: NASA Life Sciences Portal
Label in NLSP: strain
SLIMS Label: Strain
NLSP field name: strain

Axiom
annotated source: strain
annotated property: definition
annotated target: An organism that is bred to have some uniform behavioral, morphological, physiological, or genetic characteristics with similarly bred organisms
definition source: ?http://purl.obolibrary.org/obo/OBI_0001185

center
type: DatatypeProperty
domain: SLSO_0000034
definition: Duty center of the NASA representative
term editor: NASA Life Sciences Portal
Label in NLSP: center
NLSP field name: center

animal id
type: DatatypeProperty
domain: SLSO_0000034
definition: Radio Frequency Identification (RFID)
term editor: NASA Life Sciences Portal
Label in NLSP: animal id
SLIMS Label: RFID

Axiom
annotated source: animal id
annotated property: definition
annotated target: Radio Frequency Identification (RFID)
definition source: https://github.com/nasa/LSDAO

group id
type: DatatypeProperty
domain: SLSO_0000034
term editor: NASA Life Sciences Portal
Label in NLSP: group id

supplier id
type: DatatypeProperty
domain: SLSO_0000034
term editor: NASA Life Sciences Portal
Label in NLSP: supplier id

supplier name
type: DatatypeProperty
domain: SLSO_0000034
definition: The vendor of the animals. (eg. Jackson Laboratory, Charles River Laboratories). Or supplier of the plant/ cells.
term editor: NASA Life Sciences Portal
Label in NLSP: supplier name
SLIMS Label: Subject supplier

Axiom
annotated source: supplier name
annotated property: definition
annotated target: The vendor of the animals. (eg. Jackson Laboratory, Charles River Laboratories). Or supplier of the plant/ cells.
definition source: https://github.com/nasa/LSDAO

subject description
type: DatatypeProperty
domain: SLSO_0000034
definition: A description of the subjects that were studied within the experiment
term editor: NASA Life Sciences Portal
Label in NLSP: subject description
SLIMS Label: Subject description

Axiom
annotated source: subject description
annotated property: definition
annotated target: A description of the subjects that were studied within the experiment
definition source: https://github.com/nasa/LSDAO

weight
type: DatatypeProperty
domain: SLSO_0000034
definition: Animal body weight at launch. Unit is a separate field. cf. This is a literal value, See pato:0000128 for quality class
term editor: NASA Life Sciences Portal
Label in NLSP: weight
SLIMS Label: Body weight at launch
NLSP field name: weight

Axiom
annotated source: weight
annotated property: definition
annotated target: Animal body weight at launch. Unit is a separate field. cf. This is a literal value, See pato:0000128 for quality class
definition source: https://github.com/nasa/LSDAO

subject index
type: DatatypeProperty
domain: SLSO_0000034
term editor: NASA Life Sciences Portal
Label in NLSP: subject index
NLSP field name: subject_index

ARC-SLIMS system name
type: DatatypeProperty
domain: SLSO_0000034
term editor: NASA Life Sciences Portal

managing NASA center
type: DatatypeProperty
domain: SLSO_0000022
definition: Indicates the center that is coordinating the implementation of the study.
Label in NLSP: Managing NASA Center
SLIMS Label: managing NASA center
NLSP field name: managing_nasa_center

Axiom
annotated source: managing NASA center
annotated property: definition
annotated target: Indicates the center that is coordinating the implementation of the study.
definition source: https://github.com/nasa/LSDAO

additional name
type: DatatypeProperty
range: string
comment: The additional name associated with the object

anniversary
type: DatatypeProperty
range: Datatype
  union of: dateTime
  union of: gYear
comment: The date of marriage, or equivalent, of the object

birth date
type: DatatypeProperty
range: Datatype
  union of: dateTime
  union of: dateTimeStamp
  union of: gYear
comment: To specify the birth date of the object

category
type: DatatypeProperty
range: string
comment: The category information about the object, also known as tags

class
type: DatatypeProperty
comment: This data property has been deprecated
deprecated: true

country name
type: DatatypeProperty
range: string
comment: The country name associated with the address of the object

extended address
type: DatatypeProperty
comment: This data property has been deprecated
deprecated: true

family name
type: DatatypeProperty
range: string
comment: The family name associated with the object

formatted name
type: DatatypeProperty
range: string
comment: The formatted text corresponding to the name of the object

given name
type: DatatypeProperty
range: string
comment: The given name associated with the object

honorific prefix
type: DatatypeProperty
range: string
comment: The honorific prefix of the name associated with the object

honorific suffix
type: DatatypeProperty
range: string
comment: The honorific suffix of the name associated with the object

label
type: DatatypeProperty
comment: This data property has been deprecated
deprecated: true

language
type: DatatypeProperty
comment: To specify the language that may be used for contacting the object. May also be used as a property parameter.

latitude
type: DatatypeProperty
comment: This data property has been deprecated. See hasGeo
deprecated: true

locality
type: DatatypeProperty
range: string
comment: The locality (e.g. city or town) associated with the address of the object

longitude
type: DatatypeProperty
comment: This data property has been deprecated. See hasGeo
deprecated: true

mailer
type: DatatypeProperty
comment: This data property has been deprecated
deprecated: true

nickname
type: DatatypeProperty
range: string
comment: The nick name associated with the object

note
type: DatatypeProperty
range: string
comment: A note associated with the object

organization name
type: DatatypeProperty
range: string
comment: To specify the organizational name associated with the object

organizational unit name
type: DatatypeProperty
sub property of: organization name
range: string
comment: To specify the organizational unit name associated with the object

post office box
type: DatatypeProperty
comment: This data property has been deprecated
deprecated: true

postal code
type: DatatypeProperty
range: string
comment: The postal code associated with the address of the object

product id
type: DatatypeProperty
range: string
comment: To specify the identifier for the product that created the object

region
type: DatatypeProperty
range: string
comment: The region (e.g. state or province) associated with the address of the object

revision
type: DatatypeProperty
range: dateTime
comment: To specify revision information about the object

role
type: DatatypeProperty
range: string
comment: To specify the function or part played in a particular situation by the object

sort as
type: DatatypeProperty
range: string
comment: To specify the string to be used for national-language-specific sorting. Used as a property parameter only.

street address
type: DatatypeProperty
range: string
comment: The street address associated with the address of the object

title
type: DatatypeProperty
range: string
comment: To specify the position or job of the object

time zone
type: DatatypeProperty
range: string
comment: To indicate time zone information that is specific to the object. May also be used as a property parameter.

value
type: DatatypeProperty
comment: Used to indicate the literal value of a data property that requires property parameters

bounding box
type: DatatypeProperty
label: cuadro delimitador @es
label: ohraničení oblasti @cs
label: quadro di delimitazione @it
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab tilføjet i DCAT 2.0. @da
change note: Propiedad nueva agregada en DCAT 2.0. @es
definition: Den geografiske omskrevne firkant af en ressource. @da
definition: El cuadro delimitador geográfico para un recurso. @es
definition: Il riquadro di delimitazione geografica di una risorsa. @it
definition: Ohraničení geografické oblasti zdroje. @cs
definition: The geographic bounding box of a resource.
scope note: El rango de esta propiedad es intencionalmente genérico con el propósito de permitir distintas codificaciones geométricas. Por ejemplo, la geometría puede ser codificada como WKT (geosparql:wktLiteral [GeoSPARQL]) o [GML] (geosparql:asGML [GeoSPARQL]). @es
scope note: Il range di questa proprietà è volutamente generica, con lo scopo di consentire diverse codifiche geometriche. Ad esempio, la geometria potrebbe essere codificata con WKT (geosparql:wktLiteral [GeoSPARQL]) o [GML] (geosparql:asGML [GeoSPARQL]). @it
scope note: Obor hodnot této vlastnosti je úmyslně obecný, aby umožnil různé kódování geometrií. Geometrie by kupříkladu mohla být kódována jako WKT (geosparql:wktLiteral [GeoSPARQL]) či [GML] (geosparql:asGML [GeoSPARQL]). @cs
scope note: Rækkevidden for denne egenskab er bevidst generisk defineret med det formål at tillade forskellige kodninger af geometrier. Geometrien kan eksempelvis repræsenteres som WKT (geosparql:asWKT [GeoSPARQL]) eller [GML] (geosparql:asGML [GeoSPARQL]). @da
scope note: The range of this property is intentionally generic, with the purpose of allowing different geometry encodings. E.g., the geometry could be encoded with as WKT (geosparql:wktLiteral [GeoSPARQL]) or [GML] (geosparql:asGML [GeoSPARQL]).

byte size
type: DatatypeProperty
comment: El tamaño de una distribución en bytes. @es
comment: La dimensione di una distribuzione in byte. @it
comment: La taille de la distribution en octects @fr
comment: Størrelsen af en distributionen angivet i bytes. @da
comment: The size of a distribution in bytes.
comment: Velikost distribuce v bajtech. @cs
comment: Το μέγεθος μιας διανομής σε bytes. @el
comment: الحجم بالبايتات @ar
comment: バイトによる配信のサイズ。 @ja
label: bytestørrelse @da
label: dimensione in byte @it
label: taille en octects @fr
label: tamaño en bytes @es
label: velikost v bajtech @cs
label: μέγεθος σε bytes @el
label: الحجم بالبايت @ar
label: バイト・サイズ @ja
definition: La taille de la distribution en octects. @fr
definition: Størrelsen af en distribution angivet i bytes. @da
scope note: Bytestørrelsen kan approximeres hvis den præcise størrelse ikke er kendt. Værdien af dcat:byteSize bør angives som xsd:decimal. @da
scope note: El tamaño en bytes puede ser aproximado cuando se desconoce el tamaño exacto. El valor literal de dcat:byteSize debe tener tipo 'xsd:decimal'. @es
scope note: La dimensione in byte può essere approssimata quando non si conosce la dimensione precisa. Il valore di dcat:byteSize dovrebbe essere espresso come un xsd:decimal. @it
scope note: La taille en octects peut être approximative lorsque l'on ignore la taille réelle. La valeur littérale de dcat:byteSize doit être de type xsd:decimal. @fr
scope note: The size in bytes can be approximated when the precise size is not known. The literal value of dcat:byteSize should by typed as xsd:decimal.
scope note: Velikost v bajtech může být přibližná, pokud její přesná hodnota není známa. Literál s hodnotou dcat:byteSize by měl mít datový typ xsd:decimal. @cs
scope note: Το μέγεθος σε bytes μπορεί να προσεγγιστεί όταν η ακριβής τιμή δεν είναι γνωστή. Η τιμή της dcat:byteSize θα πρέπει να δίνεται με τύπο δεδομένων xsd:decimal. @el
scope note: الحجم يمكن أن يكون تقريبي إذا كان الحجم الدقيق غير معروف @ar
scope note: 正確なサイズが不明である場合、サイズは、バイトによる近似値を示すことができます。 @ja

centroid
type: DatatypeProperty
label: centroide @es
label: geometrisk tyngdepunkt @da
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab tilføjet i DCAT 2.0. @da
definition: Det geometrisk tyngdepunkt (centroid) for en ressource. @da
definition: El centro geográfico (centroide) de un recurso. @es
definition: Geografický střed (centroid) zdroje. @cs
definition: Il centro geografico (centroide) di una risorsa. @it
definition: The geographic center (centroid) of a resource.
scope note: El rango de esta propiedad es intencionalmente genérico con el objetivo de permitir distintas codificaciones geométricas. Por ejemplo, la geometría puede codificarse como WKT (geosparql:wktLiteral [GeoSPARQL]) o [GML] (geosparql:asGML [GeoSPARQL]). @es
scope note: Il range di questa proprietà è volutamente generica, con lo scopo di consentire diverse codifiche geometriche. Ad esempio, la geometria potrebbe essere codificata con WKT (geosparql:wktLiteral [GeoSPARQL]) o [GML] (geosparql:asGML [GeoSPARQL]). @it
scope note: Obor hodnot této vlastnosti je úmyslně obecný, aby umožnil různé kódování geometrií. Geometrie by kupříkladu mohla být kódována jako WKT (geosparql:wktLiteral [GeoSPARQL]) či [GML] (geosparql:asGML [GeoSPARQL]). @cs
scope note: Rækkevidden for denne egenskab er bevidst generisk definere med det formål at tillade forskellige geokodninger. Geometrien kan eksempelvis repræsenteres som WKT (geosparql:asWKT [GeoSPARQL]) eller [GML] (geosparql:asGML [GeoSPARQL]). @da
scope note: The range of this property is intentionally generic, with the purpose of allowing different geometry encodings. E.g., the geometry could be encoded with as WKT (geosparql:wktLiteral [GeoSPARQL]) or [GML] (geosparql:asGML [GeoSPARQL]).

end date
type: DatatypeProperty
label: data di fine @it
label: datum konce @cs
label: fecha final @es
label: slutdato @da
alternative label: sluttidspunkt @da
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab i DCAT 2.0. @da
definition: El fin del período. @es
definition: Konec doby trvání. @cs
definition: La fine del periodo. @it
definition: Slutningen på perioden. @da
definition: The end of the period.
scope note: El rango de esta propiedad es intencionalmente genérico con el propósito de permitir distintos niveles de precisión temporal para especificar el fin del período. Por ejemplo, puede expresarse como una fecha (xsd:date), una fecha y un tiempo (xsd:dateTime), o un año (xsd:gYear). @es
scope note: La range di questa proprietà è volutamente generico, con lo scopo di consentire diversi livelli di precisione temporale per specificare la fine di un periodo. Ad esempio, può essere espresso con una data (xsd:date), una data e un'ora (xsd:dateTime), o un anno (xsd:gYear). @it
scope note: Obor hodnot této vlastnosti je úmyslně obecný, aby umožnil různé úrovně časového rozlišení pro specifikaci konce doby trvání. Ten může být kupříkladu vyjádřen datumem (xsd:date), datumem a časem (xsd:dateTime) či rokem (xsd:gYear). @cs
scope note: Rækkeviden for denne egenskab er bevidst generisk defineret med det formål at tillade forskellige niveauer af tidslig præcision ifm. angivelse af slutdatoen for en periode. Den kan eksempelvis udtrykkes som en dato (xsd:date), en dato og et tidspunkt (xsd:dateTime), eller et årstal (xsd:gYear). @da
scope note: The range of this property is intentionally generic, with the purpose of allowing different level of temporal precision for specifying the end of a period. E.g., it can be expressed with a date (xsd:date), a date and time (xsd:dateTime), or a year (xsd:gYear).

keyword
type: DatatypeProperty
sub property of: subject
comment: A keyword or tag describing a resource.
comment: Et nøgleord eller tag til beskrivelse af en ressource. @da
comment: Klíčové slovo nebo značka popisující zdroj. @cs
comment: Un mot-clé ou étiquette décrivant une ressource. @fr
comment: Una palabra clave o etiqueta que describe un recurso. @es
comment: Una parola chiave o un'etichetta per descrivere la risorsa. @it
comment: Μία λέξη-κλειδί ή μία ετικέτα που περιγράφει το σύνολο δεδομένων. @el
comment: كلمة مفتاحيه توصف قائمة البيانات @ar
comment: データセットを記述しているキーワードまたはタグ。 @ja
label: klíčové slovo @cs
label: mot-clés @fr
label: nøgleord @da
label: palabra clave @es
label: parola chiave @it
label: λέξη-κλειδί @el
label: كلمة مفتاحية @ar
label: キーワード/タグ @ja

spatial resolution (meters)
type: DatatypeProperty
comment: mindste geografiske afstand som kan erkendes i et datasæt, målt i meter. @da
comment: minimum spatial separation resolvable in a dataset, measured in meters.
comment: minimum spatial separation resolvable in a dataset, measured in metres.
comment: minimální prostorový rozestup rozeznatelný v datové sadě, měřeno v metrech. @cs
comment: mínima separacíon espacial disponible en un conjunto de datos, medida en metros. @es
comment: separazione spaziale minima risolvibile in un set di dati, misurata in metri. @it
label: geografisk opløsning (meter) @da
label: prostorové rozlišení (metry) @cs
label: resolución espacial (metros) @es
label: risoluzione spaziale (metros) @it
label: spatial resolution (metres)
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad añadida en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny genskab tilføjet i DCAT 2.0. @da
definition: mindste geografiske afstand som kan resolveres i et datasæt, målt i meter. @da
editorial note: Kan optræde i forbindelse med beskrivelse af datasættet eller datasætditributionen, så der er ikke angivet et domæne for egenskaben. @da
editorial note: Might appear in the description of a Dataset or a Distribution, so no domain is specified.
editorial note: Může se vyskytnout v popisu Datové sady nebo Distribuce, takže nebyl specifikován definiční obor. @cs
scope note: Alternative geografiske opløsninger kan leveres som forskellige datasætdistributioner. @da
scope note: Alternative spatial resolutions might be provided as different dataset distributions.
scope note: Distintas distribuciones de un conjunto de datos pueden tener resoluciones espaciales diferentes. @es
scope note: Hvis datasættet udgøres af et billede eller et grid, så bør dette svare til afstanden mellem elementerne. For andre typer af spatiale datasæt, vil denne egenskab typisk indikere den mindste afstand mellem elementerne i datasættet. @da
scope note: If the dataset is an image or grid this should correspond to the spacing of items. For other kinds of spatial dataset, this property will usually indicate the smallest distance between items in the dataset.
scope note: Pokud je datová sada obraz či mřížka, měla by tato vlastnost odpovídat rozestupu položek. Pro ostatní druhy prostorových datových sad bude tato vlastnost obvykle indikovat nejmenší vzdálenost mezi položkami této datové sady. @cs
scope note: Risoluzioni spaziali alternative possono essere fornite come diverse distribuzioni di set di dati. @it
scope note: Různá prostorová rozlišení mohou být poskytována jako různé distribuce datové sady. @cs
scope note: Se il set di dati è un'immagine o una griglia, questo dovrebbe corrispondere alla spaziatura degli elementi. Per altri tipi di set di dati spaziali, questa proprietà di solito indica la distanza minima tra gli elementi nel set di dati. @it
scope note: Si el conjunto de datos es una imágen o grilla, esta propiedad corresponde al espaciado de los elementos. Para otro tipo de conjunto de datos espaciales, esta propieda usualmente indica la menor distancia entre los elementos de dichos datos. @es

start date
type: DatatypeProperty
label: data di inizio @it
label: datum začátku @cs
label: startdato @da
alternative label: starttidspunkt @da
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad agregada en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
change note: Ny egenskab tilføjet i DCAT 2.0. @da
definition: El comienzo del período @es
definition: L'inizio del periodo @it
definition: Start på perioden. @da
definition: The start of the period
definition: Začátek doby trvání @cs
scope note: El rango de esta propiedad es intencionalmente genérico con el propósito de permitir distintos niveles de precisión temporal para especificar el comienzo de un período. Por ejemplo, puede expresarse como una fecha (xsd:date), una fecha y un tiempo (xsd:dateTime), o un año (xsd:gYear). @es
scope note: Il range di questa proprietà è volutamente generico, con lo scopo di consentire diversi livelli di precisione temporale per specificare l'inizio di un periodo. Ad esempio, può essere espresso con una data (xsd:date), una data e un'ora (xsd:dateTime), o un anno (xsd:gYear). @it
scope note: Obor hodnot této vlastnosti je úmyslně obecný, aby umožnil různé úrovně časového rozlišení pro specifikaci začátku doby trvání. Ten může být kupříkladu vyjádřen datumem (xsd:date), datumem a časem (xsd:dateTime) či rokem (xsd:gYear). @cs
scope note: Rækkeviden for denne egenskab er bevidst generisk defineret med det formål at tillade forskellige niveauer af tidslig præcision ifm. angivelse af startdatoen for en periode. Den kan eksempelvis udtrykkes som en dato (xsd:date), en dato og et tidspunkt (xsd:dateTime), eller et årstal (xsd:gYear). @da
scope note: The range of this property is intentionally generic, with the purpose of allowing different level of temporal precision for specifying the start of a period. E.g., it can be expressed with a date (xsd:date), a date and time (xsd:dateTime), or a year (xsd:gYear).

temporal resolution
type: DatatypeProperty
comment: mindste tidsperiode der kan resolveres i datasættet. @da
comment: minimum time period resolvable in a dataset.
comment: minimální doba trvání rozlišitelná v datové sadě. @cs
comment: periodo di tempo minimo risolvibile in un set di dati. @it
comment: período de tiempo mínimo en el conjunto de datos. @es
label: resolución temporal @es
label: risoluzione temporale @it
label: tidslig opløsning @da
label: časové rozlišení @cs
change note: New property added in DCAT 2.0.
change note: Nová vlastnost přidaná ve verzi DCAT 2.0. @cs
change note: Nueva propiedad añadida en DCAT 2.0. @es
change note: Nuova proprietà aggiunta in DCAT 2.0. @it
editorial note: Kan optræde i forbindelse med beskrivelse af datasættet eller datasætditributionen, så der er ikke angivet et domæne for egenskaben. @da
editorial note: Might appear in the description of a Dataset or a Distribution, so no domain is specified.
editorial note: Může se vyskytnout v popisu Datové sady nebo Distribuce, takže nebyl specifikován definiční obor. @cs
scope note: Alternative temporal resolutions might be provided as different dataset distributions.
scope note: Alternative tidslige opløsninger kan leveres som forskellige datasætdistributioner. @da
scope note: Distintas distribuciones del conjunto de datos pueden tener resoluciones temporales diferentes. @es
scope note: Hvis datasættet er en tidsserie, så bør denne egenskab svare til afstanden mellem elementerne i tidsserien. For andre typer af datasæt indikerer denne egenskab den mindste tidsforskel mellem elementer i datasættet. @da
scope note: If the dataset is a time-series this should correspond to the spacing of items in the series. For other kinds of dataset, this property will usually indicate the smallest time difference between items in the dataset.
scope note: Pokud je datová sada časovou řadou, měla by tato vlastnost odpovídat rozestupu položek v řadě. Pro ostatní druhy datových sad bude tato vlastnost obvykle indikovat nejmenší časovou vzdálenost mezi položkami této datové sady. @cs
scope note: Risoluzioni temporali alternative potrebbero essere fornite come diverse distribuzioni di set di dati. @it
scope note: Různá časová rozlišení mohou být poskytována jako různé distribuce datové sady. @cs
scope note: Se il set di dati è una serie temporale, questo dovrebbe corrispondere alla spaziatura degli elementi della serie. Per altri tipi di set di dati, questa proprietà di solito indica la più piccola differenza di tempo tra gli elementi nel set di dati. @it
scope note: Si el conjunto de datos es una serie temporal, debe corresponder al espaciado de los elementos de la serie. Para otro tipo de conjuntos de datos, esta propiedad indicará usualmente la menor diferencia de tiempo entre elementos en el dataset. @es

software development
type: Class
equivalent class: Class
  intersection of: OBI_0000011
  intersection of: Restriction
    on property: has_specified_output
    some values from: Class
      union of: IAO_0000010
      union of: IAO_0000096
subclass of: OBI_0000011
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    union of: IAO_0000010
    union of: IAO_0000096
definition: A planned process that has specified output a software product and that involves the creation of source code.
term editor: Mathias Brochhausen
term editor: William R. Hogan
definition source: http://en.wikipedia.org/wiki/Software_development
IAO_0000600: A planned process resulting in a software product involving the creation of source code.

dataset creating
type: Class
equivalent class: Class
  intersection of: OBI_0000011
  intersection of: Restriction
    on property: has_specified_output
    some values from: IAO_0000100
subclass of: OBI_0000011
subclass of: Restriction
  on property: has_specified_output
  some values from: IAO_0000100
editor preferred label: creating a data set
definition: A planned process that has a data set as its specified output.
term editor: William R. Hogan
alternative term: data set creation
alternative term: dataset creation

entity
type: Class
BFO OWL specification label: entity
BFO_0000180: Entity
example of usage: Julius Caesar
example of usage: Verdi’s Requiem
example of usage: the Second World War
example of usage: your body mass index
editor note: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
editor note: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
IAO_0000600: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

Axiom
annotated source: entity
annotated property: editor note
annotated target: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000004
comment: per discussion with Barry Smith

Axiom
annotated source: entity
annotated property: IAO_0000600
annotated target: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/001-001

continuant
type: Class
subclass of: entity
subclass of: Restriction
  on property: is part of
  all values from: continuant
disjoint with: occurrent
disjoint with: Restriction
  on property: is part of
  some values from: occurrent
BFO OWL specification label: continuant
BFO_0000180: Continuant
editor preferred label: continuant
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
editor note: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
editor note: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
IAO_0000412: pato.owl
IAO_0000600: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
IAO_0000601: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
IAO_0000601: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
IAO_0000601: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0000602: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0000602: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0000602: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
id: BFO:0000002

Axiom
annotated source: continuant
annotated property: editor note
annotated target: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000007

Axiom
annotated source: continuant
annotated property: IAO_0000600
annotated target: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000601
annotated target: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/011-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/011-002

Axiom
annotated source: continuant
annotated property: IAO_0000602
annotated target: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/011-002

occurrent
type: Class
subclass of: entity
subclass of: Restriction
  on property: is part of
  all values from: occurrent
disjoint with: Restriction
  on property: is part of
  some values from: continuant
BFO OWL specification label: occurrent
BFO_0000180: Occurrent
definition: An entity that has temporal parts and that happens, unfolds or develops through time.
editor note: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
editor note: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
editor note: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
editor note: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
IAO_0000600: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
IAO_0000601: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
IAO_0000601: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
IAO_0000602: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0000602: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000006
comment: per discussion with Barry Smith

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000012

Axiom
annotated source: occurrent
annotated property: IAO_0000600
annotated target: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/077-002

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000601
annotated target: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/079-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/079-001

Axiom
annotated source: occurrent
annotated property: IAO_0000602
annotated target: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/079-001

independent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: is part of
  all values from: independent continuant
disjoint with: specifically dependent continuant
disjoint with: generically dependent continuant
BFO OWL specification label: ic
BFO_0000180: IndependentContinuant
example of usage: a chair
example of usage: a heart
example of usage: a leg
example of usage: a molecule
example of usage: a spatial region
example of usage: an atom
example of usage: an orchestra.
example of usage: an organism
example of usage: the bottom right portion of a human torso
example of usage: the interior of your mouth
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
definition: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
IAO_0000412: http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl
IAO_0000601: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
IAO_0000601: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
IAO_0000602: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0000602: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0000602: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001
is defined by: bfo.owl
id: BFO:0000004
comment: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.

Axiom
annotated source: independent continuant
annotated property: definition
annotated target: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000601
annotated target: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: IAO_0000602
annotated target: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/017-002

spatial region
type: Class
subclass of: immaterial entity

process
type: Class
subclass of: occurrent
BFO OWL specification label: process
BFO_0000180: Process
example of usage: a process of cell-division, \ a beating of the heart
example of usage: a process of meiosis
example of usage: a process of sleeping
example of usage: the course of a disease
example of usage: the flight of a bird
example of usage: the life of an organism
example of usage: your process of aging.
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
definition: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
editor note: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
IAO_0000602: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
has OBO namespace: source
id: BFO:0000015
comment: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.

Axiom
annotated source: process
annotated property: definition
annotated target: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: IAO_0000602
annotated target: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: IAO_0000602
annotated target: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/083-003

disposition
type: Class
subclass of: realizable
disjoint with: role
BFO OWL specification label: disposition
BFO_0000180: Disposition
example of usage: an atom of element X has the disposition to decay to an atom of element Y
example of usage: certain people have a predisposition to colon cancer
example of usage: children are innately disposed to categorize objects in certain ways.
example of usage: the cell wall is disposed to filter chemicals in endocytosis and exocytosis
editor note: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
IAO_0000600: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
IAO_0000601: If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
IAO_0000602: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
IAO_0000602: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]

Axiom
annotated source: disposition
annotated property: IAO_0000600
annotated target: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/062-002

Axiom
annotated source: disposition
annotated property: IAO_0000601
annotated target: If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/062-002

Axiom
annotated source: disposition
annotated property: IAO_0000602
annotated target: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/062-002

realizable
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: is part of
  all values from: realizable
disjoint with: quality
BFO OWL specification label: realizable
BFO_0000180: RealizableEntity
example of usage: the disposition of this piece of metal to conduct electricity.
example of usage: the disposition of your blood to coagulate
example of usage: the function of your reproductive organs
example of usage: the role of being a doctor
example of usage: the role of this boundary to delineate where Utah and Colorado meet
definition: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
IAO_0000600: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
IAO_0000601: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
IAO_0000602: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0000602: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
label: realizable entity

Axiom
annotated source: realizable
annotated property: IAO_0000600
annotated target: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/058-002

Axiom
annotated source: realizable
annotated property: IAO_0000601
annotated target: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable
annotated property: IAO_0000602
annotated target: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable
annotated property: IAO_0000602
annotated target: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable
annotated property: IAO_0000602
annotated target: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/058-002

Axiom
annotated source: realizable
annotated property: IAO_0000602
annotated target: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/058-002

quality
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: is part of
  all values from: quality
BFO OWL specification label: quality
BFO_0000180: Quality
editor preferred label: quality
example of usage: the ambient temperature of this portion of air
example of usage: the color of a tomato
example of usage: the length of the circumference of your waist
example of usage: the mass of this piece of gold.
example of usage: the shape of your nose
example of usage: the shape of your nostril
IAO_0000412: pato.owl
IAO_0000600: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
IAO_0000601: If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
IAO_0000602: (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
IAO_0000602: (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
id: BFO:0000019

Axiom
annotated source: quality
annotated property: IAO_0000600
annotated target: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: IAO_0000601
annotated target: If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/105-001

Axiom
annotated source: quality
annotated property: IAO_0000602
annotated target: (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: IAO_0000602
annotated target: (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/105-001

specifically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: is part of
  all values from: specifically dependent continuant
disjoint with: generically dependent continuant
BFO OWL specification label: sdc
BFO_0000180: SpecificallyDependentContinuant
editor preferred label: specifically dependent continuant
example of usage: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
example of usage: of one-sided specifically dependent continuants: the mass of this tomato
example of usage: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
example of usage: the disposition of this fish to decay
example of usage: the function of this heart: to pump blood
example of usage: the mutual dependence of proton donors and acceptors in chemical reactions [79
example of usage: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
example of usage: the pink color of a medium rare piece of grilled filet mignon at its center
example of usage: the role of being a doctor
example of usage: the shape of this hole.
example of usage: the smell of this portion of mozzarella
definition: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
definition: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
editor note: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
IAO_0000412: pato.owl
IAO_0000602: (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
IAO_0000602: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
id: BFO:0000020
comment: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
label: characteristic

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/050-003

Axiom
annotated source: specifically dependent continuant
annotated property: editor note
annotated target: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000005
comment: per discussion with Barry Smith

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/131-004

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/050-003

Axiom
annotated source: specifically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/050-003

role
type: Class
equivalent class: role
subclass of: role
BFO OWL specification label: role
BFO_0000180: Role
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: the priest role
example of usage: the role of a boundary to demarcate two neighboring administrative territories
example of usage: the role of a building in serving as a military target
example of usage: the role of a stone in marking a property boundary
example of usage: the role of subject in a clinical trial
example of usage: the student role
definition: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
editor note: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
IAO_0000600: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
IAO_0000602: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]

Axiom
annotated source: role
annotated property: IAO_0000600
annotated target: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/061-001

Axiom
annotated source: role
annotated property: IAO_0000602
annotated target: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/061-001

Axiom
annotated source: role
annotated property: IAO_0000602
annotated target: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/061-001

fiat object
type: Class
subclass of: material entity
label: fiat object part

object aggregate
type: Class
subclass of: material entity
BFO OWL specification label: object-aggregate
BFO_0000180: ObjectAggregate
example of usage: a collection of cells in a blood biobank.
example of usage: a swarm of bees is an aggregate of members who are linked together through natural bonds
example of usage: a symphony orchestra
example of usage: an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
example of usage: defined by fiat: the aggregate of members of an organization
example of usage: defined through physical attachment: the aggregate of atoms in a lump of granite
example of usage: defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
example of usage: defined via attributive delimitations such as: the patients in this hospital
example of usage: the aggregate of bearings in a constant velocity axle joint
example of usage: the aggregate of blood cells in your body
example of usage: the nitrogen atoms in the atmosphere
example of usage: the restaurants in Palo Alto
example of usage: your collection of Meissen ceramic plates.
editor note: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
editor note: BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
definition source: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
IAO_0000600: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
IAO_0000602: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000011

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000301

Axiom
annotated source: object aggregate
annotated property: definition source
annotated target: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/0000300

Axiom
annotated source: object aggregate
annotated property: IAO_0000600
annotated target: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/025-004

Axiom
annotated source: object aggregate
annotated property: IAO_0000602
annotated target: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/025-004

object
type: Class
subclass of: material entity

generically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: is part of
  all values from: generically dependent continuant
BFO OWL specification label: gdc
BFO_0000180: GenericallyDependentContinuant
example of usage: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
example of usage: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
example of usage: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
definition: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
definition: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
IAO_0000602: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
id: BFO:0000031

Axiom
annotated source: generically dependent continuant
annotated property: definition
annotated target: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/074-001

Axiom
annotated source: generically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/074-001

Axiom
annotated source: generically dependent continuant
annotated property: IAO_0000602
annotated target: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/074-001

function
type: Class
subclass of: disposition
BFO OWL specification label: function
BFO_0000180: Function
example of usage: the function of a hammer to drive in nails
example of usage: the function of a heart pacemaker to regulate the beating of a heart through electricity
example of usage: the function of amylase in saliva to break down starch into sugar
editor note: BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
IAO_0000600: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
IAO_0000602: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]

Axiom
annotated source: function
annotated property: IAO_0000600
annotated target: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/064-001

Axiom
annotated source: function
annotated property: IAO_0000602
annotated target: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/064-001

Axiom
annotated source: function
annotated property: IAO_0000602
annotated target: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/064-001

material entity
type: Class
subclass of: independent continuant
disjoint with: immaterial entity
disjoint with: Restriction
  on property: is part of
  some values from: immaterial entity
BFO OWL specification label: material
BFO_0000180: MaterialEntity
editor preferred label: material entity
example of usage: Collection of random bacteria, a chair, dorsal surface of the body.
example of usage: a flame
example of usage: a forest fire
example of usage: a human being
example of usage: a hurricane
example of usage: a photon
example of usage: a puff of smoke
example of usage: a sea wave
example of usage: a tornado
example of usage: an aggregate of human beings.
example of usage: an energy wave
example of usage: an epidemic
example of usage: the undetached arm of a human being
definition: An independent continuant [snap:IndependentContinuant] that is spatially extended whose identity is independent of that of other entities and can be maintained through time. Note: Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology.
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
editor note: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
editor note: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
editor note: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
definition source: BFO
IAO_0000412: cl.owl
IAO_0000412: ido.owl
IAO_0000412: uberon.owl
IAO_0000600: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
IAO_0000601: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
IAO_0000601: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
IAO_0000602: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0000602: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
id: BFO:0000040

Axiom
annotated source: material entity
annotated property: IAO_0000600
annotated target: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/020-002

Axiom
annotated source: material entity
annotated property: IAO_0000601
annotated target: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/020-002

Axiom
annotated source: material entity
annotated property: IAO_0000602
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/020-002

immaterial entity
type: Class
subclass of: independent continuant
disjoint with: Restriction
  on property: has part
  some values from: material entity

history
type: Class
subclass of: process
BFO OWL specification label: history
BFO_0000180: History
IAO_0000600: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])

Axiom
annotated source: history
annotated property: IAO_0000600
annotated target: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
IAO_0010000: http://purl.obolibrary.org/obo/bfo/axiom/138-001

electron
type: Class
subclass of: lepton
definition: Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV.
charge: -1
mass: 0.000548579903
monoisotopicmass: 0.0
has db xref: KEGG:C05359
has db xref: PMID:21614077
has db xref: Wikipedia:Electron
has exact synonym: electron
has OBO namespace: chebi_ontology
has_related_synonym: Elektron
has_related_synonym: beta
has_related_synonym: beta(-)
has_related_synonym: beta-particle
has_related_synonym: e
has_related_synonym: e(-)
has_related_synonym: e-
has_related_synonym: negatron
id: CHEBI:10545
in subset: 3 STAR

Axiom
annotated source: electron
annotated property: hasDbXref
annotated target: PMID:21614077
source: Europe PMC

Axiom
annotated source: electron
annotated property: hasExactSynonym
annotated target: electron
has db xref: ChEBI

Axiom
annotated source: electron
annotated property: hasExactSynonym
annotated target: electron
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: electron
annotated property: hasExactSynonym
annotated target: electron
has db xref: KEGG_COMPOUND

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: Elektron
has db xref: ChEBI

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: beta
has db xref: IUPAC

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: beta(-)
has db xref: ChEBI

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: beta-particle
has db xref: IUPAC

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: e
has db xref: IUPAC

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: e(-)
has db xref: UniProt

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: e-
has db xref: KEGG_COMPOUND

Axiom
annotated source: electron
annotated property: has_related_synonym
annotated target: negatron
has db xref: IUPAC

gas molecular entity
type: Class
subclass of: main group molecular entity
definition: Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).
has db xref: Wikipedia:https://en.wikipedia.org/wiki/Gas
has OBO namespace: chebi_ontology
has_related_synonym: gas molecular entities
has_related_synonym: gaseous molecular entities
has_related_synonym: gaseous molecular entity
id: CHEBI:138675
in subset: 3 STAR

Axiom
annotated source: gas molecular entity
annotated property: has_related_synonym
annotated target: gas molecular entities
has db xref: ChEBI

Axiom
annotated source: gas molecular entity
annotated property: has_related_synonym
annotated target: gaseous molecular entities
has db xref: ChEBI

Axiom
annotated source: gas molecular entity
annotated property: has_related_synonym
annotated target: gaseous molecular entity
has db xref: ChEBI

carbamate
type: Class
subclass of: amino-acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: carbamic acid
charge: -1
formula: CH2NO2
inchi: InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1
inchikey: KXDHJXZQYSOELW-UHFFFAOYSA-M
mass: 60.03212
monoisotopicmass: 60.00910
smiles: NC([O-])=O
has db xref: Beilstein:3903503
has db xref: CAS:302-11-4
has db xref: Gmelin:239604
has exact synonym: carbamate
has OBO namespace: chebi_ontology
has_related_synonym: Carbamat
has_related_synonym: Karbamat
has_related_synonym: carbamate ion
has_related_synonym: carbamic acid, ion(1-)
id: CHEBI:13941
in subset: 3 STAR

Axiom
annotated source: carbamate
annotated property: hasDbXref
annotated target: Beilstein:3903503
source: Beilstein

Axiom
annotated source: carbamate
annotated property: hasDbXref
annotated target: CAS:302-11-4
source: ChemIDplus

Axiom
annotated source: carbamate
annotated property: hasDbXref
annotated target: Gmelin:239604
source: Gmelin

Axiom
annotated source: carbamate
annotated property: hasExactSynonym
annotated target: carbamate
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbamate
annotated property: hasExactSynonym
annotated target: carbamate
has db xref: UniProt

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: Carbamat
has db xref: ChEBI

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: Karbamat
has db xref: ChEBI

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: carbamate ion
has db xref: ChemIDplus

Axiom
annotated source: carbamate
annotated property: has_related_synonym
annotated target: carbamic acid, ion(1-)
has db xref: ChemIDplus

electron donor
type: Class
subclass of: donor

acceptor
type: Class
subclass of: chemical role
definition: A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity.
has alternative id: CHEBI:13699
has alternative id: CHEBI:2377
has db xref: KEGG:C00028
has db xref: KEGG:C16722
has exact synonym: Acceptor
has OBO namespace: chebi_ontology
has_related_synonym: A
has_related_synonym: Akzeptor
has_related_synonym: Hydrogen-acceptor
has_related_synonym: Oxidized donor
has_related_synonym: accepteur
id: CHEBI:15339
in subset: 3 STAR

Axiom
annotated source: acceptor
annotated property: hasExactSynonym
annotated target: Acceptor
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: A
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: Akzeptor
has db xref: ChEBI

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: Hydrogen-acceptor
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: Oxidized donor
has db xref: KEGG_COMPOUND

Axiom
annotated source: acceptor
annotated property: has_related_synonym
annotated target: accepteur
has db xref: ChEBI

water
type: Class
subclass of: oxygen hydride
subclass of: mononuclear parent hydride
subclass of: inorganic hydroxy compound

hydron
type: Class
subclass of: monoatomic monocation
subclass of: monoatomic hydrogen
subclass of: atomic nucleus
subclass of: monovalent inorganic cation
definition: The general name for the hydrogen nucleus, to be used without regard to the hydrogen nuclear mass (either for hydrogen in its natural abundance or where it is not desired to distinguish between the isotopes).
charge: +1
formula: H
inchi: InChI=1S/p+1
inchikey: GPRLSGONYQIRFK-UHFFFAOYSA-N
mass: 1.00794
monoisotopicmass: 1.008
smiles: [H+]
has alternative id: CHEBI:10744
has alternative id: CHEBI:13357
has alternative id: CHEBI:5584
has db xref: KEGG:C00080
has exact synonym: Hydron
has exact synonym: hydrogen(1+)
has exact synonym: hydron
has OBO namespace: chebi_ontology
has_related_synonym: H(+)
has_related_synonym: H+
id: CHEBI:15378
in subset: 3 STAR

Axiom
annotated source: hydron
annotated property: hasExactSynonym
annotated target: Hydron
has db xref: KEGG_COMPOUND

Axiom
annotated source: hydron
annotated property: hasExactSynonym
annotated target: hydrogen(1+)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydron
annotated property: hasExactSynonym
annotated target: hydron
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydron
annotated property: has_related_synonym
annotated target: H(+)
has db xref: UniProt

Axiom
annotated source: hydron
annotated property: has_related_synonym
annotated target: H+
has db xref: KEGG_COMPOUND

dioxygen
type: Class
subclass of: gas molecular entity
subclass of: elemental molecule
subclass of: diatomic oxygen
has exact synonym: dioxygen
has_related_synonym: Disauerstoff
has_related_synonym: E 948
has_related_synonym: E-948
has_related_synonym: E948
has_related_synonym: O2
has_related_synonym: OXYGEN MOLECULE
has_related_synonym: Oxygen
has_related_synonym: [OO]
has_related_synonym: dioxygene
has_related_synonym: molecular oxygen

polypeptide
type: Class
subclass of: peptide
subclass of: macromolecule
definition: A peptide containing ten or more amino acid residues.
formula: C4H6N2O3R2(C2H2NOR)n
has alternative id: CHEBI:14860
has alternative id: CHEBI:8314
has db xref: KEGG:C00403
has exact synonym: Polypeptide
has exact synonym: polypeptides
has OBO namespace: chebi_ontology
has_related_synonym: Polypeptid
has_related_synonym: polipeptido
id: CHEBI:15841
in subset: 3 STAR

Axiom
annotated source: polypeptide
annotated property: hasExactSynonym
annotated target: Polypeptide
has db xref: KEGG_COMPOUND

Axiom
annotated source: polypeptide
annotated property: hasExactSynonym
annotated target: polypeptides
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: polypeptide
annotated property: has_related_synonym
annotated target: Polypeptid
has db xref: ChEBI

Axiom
annotated source: polypeptide
annotated property: has_related_synonym
annotated target: polipeptido
has db xref: ChEBI

ammonia
type: Class
subclass of: gas molecular entity
subclass of: azane
subclass of: mononuclear parent hydride
definition: An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms.
charge: 0
formula: H3N
inchi: InChI=1S/H3N/h1H3
inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-N
mass: 17.03056
monoisotopicmass: 17.02655
smiles: [H]N([H])[H]
has alternative id: CHEBI:13405
has alternative id: CHEBI:13406
has alternative id: CHEBI:13407
has alternative id: CHEBI:13771
has alternative id: CHEBI:22533
has alternative id: CHEBI:44269
has alternative id: CHEBI:44284
has alternative id: CHEBI:44404
has alternative id: CHEBI:7434
has db xref: Beilstein:3587154
has db xref: CAS:7664-41-7
has db xref: Drug_Central:4625
has db xref: Gmelin:79
has db xref: HMDB:HMDB0000051
has db xref: KEGG:C00014
has db xref: KEGG:D02916
has db xref: KNApSAcK:C00007267
has db xref: MetaCyc:AMMONIA
has db xref: MolBase:930
has db xref: PDBeChem:NH3
has db xref: PMID:110589
has db xref: PMID:11139349
has db xref: PMID:11540049
has db xref: PMID:11746427
has db xref: PMID:11783653
has db xref: PMID:13753780
has db xref: PMID:14663195
has db xref: PMID:15092448
has db xref: PMID:15094021
has db xref: PMID:15554424
has db xref: PMID:15969015
has db xref: PMID:16008360
has db xref: PMID:16050680
has db xref: PMID:16348008
has db xref: PMID:16349403
has db xref: PMID:16614889
has db xref: PMID:16664306
has db xref: PMID:16842901
has db xref: PMID:17025297
has db xref: PMID:17439666
has db xref: PMID:17569513
has db xref: PMID:17737668
has db xref: PMID:18670398
has db xref: PMID:22002069
has db xref: PMID:22081570
has db xref: PMID:22088435
has db xref: PMID:22100291
has db xref: PMID:22130175
has db xref: PMID:22150211
has db xref: PMID:22240068
has db xref: PMID:22290316
has db xref: PMID:22342082
has db xref: PMID:22385337
has db xref: PMID:22443779
has db xref: PMID:22560242
has db xref: Reaxys:3587154
has db xref: Wikipedia:Ammonia
has exact synonym: AMMONIA
has exact synonym: Ammonia
has exact synonym: ammonia
has exact synonym: azane
has OBO namespace: chebi_ontology
has_related_synonym: Ammoniak
has_related_synonym: NH3
has_related_synonym: R-717
has_related_synonym: [NH3]
has_related_synonym: ammoniac
has_related_synonym: amoniaco

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: Beilstein:3587154
source: Beilstein

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: CAS:7664-41-7
source: ChemIDplus

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: CAS:7664-41-7
source: KEGG COMPOUND

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: CAS:7664-41-7
source: NIST Chemistry WebBook

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: Drug_Central:4625
source: DrugCentral

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: Gmelin:79
source: Gmelin

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:110589
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:11139349
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:11540049
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:11746427
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:11783653
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:13753780
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:14663195
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:15092448
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:15094021
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:15554424
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:15969015
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:16008360
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:16050680
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:16348008
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:16349403
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:16614889
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:16664306
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:16842901
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:17025297
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:17439666
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:17569513
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:17737668
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:18670398
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22002069
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22081570
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22088435
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22100291
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22130175
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22150211
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22240068
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22290316
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22342082
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22385337
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22443779
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: PMID:22560242
source: Europe PMC

Axiom
annotated source: ammonia
annotated property: hasDbXref
annotated target: Reaxys:3587154
source: Reaxys

Axiom
annotated source: ammonia
annotated property: hasExactSynonym
annotated target: AMMONIA
has db xref: PDBeChem

Axiom
annotated source: ammonia
annotated property: hasExactSynonym
annotated target: Ammonia
has db xref: KEGG_COMPOUND

Axiom
annotated source: ammonia
annotated property: hasExactSynonym
annotated target: ammonia
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonia
annotated property: hasExactSynonym
annotated target: azane
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: Ammoniak
has db xref: ChemIDplus

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: NH3
has db xref: IUPAC

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: NH3
has db xref: KEGG_COMPOUND

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: NH3
has db xref: UniProt

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: R-717
has db xref: ChEBI

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: [NH3]
has db xref: MolBase

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: ammoniac
has db xref: ChEBI

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: amoniaco
has db xref: ChEBI

Axiom
annotated source: ammonia
annotated property: has_related_synonym
annotated target: spirit of hartshorn
has db xref: ChemIDplus

carbon dioxide
type: Class
subclass of: gas molecular entity
subclass of: carbon oxide
subclass of: one-carbon compound

protein polypeptide chain
type: Class
subclass of: polypeptide
subclass of: Restriction
  on property: has part
  some values from: proteinogenic amino-acid residue
definition: A naturally occurring polypeptide synthesized at the ribosome.
has alternative id: CHEBI:8526
has db xref: KEGG:C00017
has OBO namespace: chebi_ontology
has_related_synonym: Protein
has_related_synonym: a protein
has_related_synonym: polypeptide chain
has_related_synonym: protein polypeptide chains
id: CHEBI:16541
in subset: 3 STAR

Axiom
annotated source: protein polypeptide chain
annotated property: has_related_synonym
annotated target: Protein
has db xref: KEGG_COMPOUND

Axiom
annotated source: protein polypeptide chain
annotated property: has_related_synonym
annotated target: a protein
has db xref: UniProt

Axiom
annotated source: protein polypeptide chain
annotated property: has_related_synonym
annotated target: polypeptide chain
has db xref: ChEBI

Axiom
annotated source: protein polypeptide chain
annotated property: has_related_synonym
annotated target: protein polypeptide chains
has db xref: ChEBI

peptide
type: Class
subclass of: carboxamide
subclass of: organic amino compound
subclass of: Restriction
  on property: has part
  some values from: amino-acid residue
subclass of: Restriction
  on property: is tautomer of
  some values from: peptide zwitterion
definition: Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc.
charge: 0
formula: (C2H2NOR)nC2H3NOR
has alternative id: CHEBI:14753
has alternative id: CHEBI:25906
has alternative id: CHEBI:7990
has db xref: KEGG:C00012
has exact synonym: Peptide
has exact synonym: peptides
has OBO namespace: chebi_ontology
has_related_synonym: Peptid
has_related_synonym: peptido
has_related_synonym: peptidos
id: CHEBI:16670
in subset: 3 STAR

Axiom
annotated source: peptide
annotated property: hasExactSynonym
annotated target: Peptide
has db xref: KEGG_COMPOUND

Axiom
annotated source: peptide
annotated property: hasExactSynonym
annotated target: peptides
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: peptide
annotated property: has_related_synonym
annotated target: Peptid
has db xref: ChEBI

Axiom
annotated source: peptide
annotated property: has_related_synonym
annotated target: peptido
has db xref: ChEBI

Axiom
annotated source: peptide
annotated property: has_related_synonym
annotated target: peptidos
has db xref: ChEBI

donor
type: Class
subclass of: chemical role
definition: A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity.
has alternative id: CHEBI:14202
has alternative id: CHEBI:4697
has db xref: KEGG:C01351
has exact synonym: Donor
has OBO namespace: chebi_ontology
has_related_synonym: Donator
has_related_synonym: donneur
id: CHEBI:17891
in subset: 3 STAR

Axiom
annotated source: donor
annotated property: hasExactSynonym
annotated target: Donor
has db xref: KEGG_COMPOUND

Axiom
annotated source: donor
annotated property: has_related_synonym
annotated target: Donator
has db xref: ChEBI

Axiom
annotated source: donor
annotated property: has_related_synonym
annotated target: donneur
has db xref: ChEBI

dinitrogen
type: Class
subclass of: gas molecular entity
subclass of: elemental molecule
subclass of: diatomic nitrogen

iron atom
type: Class
subclass of: iron group element atom
definition: An iron group element atom that has atomic number 26.
has exact synonym: iron
has_related_synonym: 26Fe
has_related_synonym: Eisen
has_related_synonym: Fe
has_related_synonym: Iron
has_related_synonym: fer
has_related_synonym: ferrum
has_related_synonym: hierro
has_related_synonym: iron

acyl group
type: Class
subclass of: organic group
definition: An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids.
has exact synonym: acyl group
has exact synonym: alkanoyl
has OBO namespace: chebi_ontology
has_related_synonym: acyl groups
has_related_synonym: alkanoyl group
has_related_synonym: groupe acyle
id: CHEBI:22221
in subset: 3 STAR

Axiom
annotated source: acyl group
annotated property: hasExactSynonym
annotated target: acyl group
has db xref: IUPAC

Axiom
annotated source: acyl group
annotated property: hasExactSynonym
annotated target: alkanoyl
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: acyl group
annotated property: has_related_synonym
annotated target: acyl groups
has db xref: ChEBI

Axiom
annotated source: acyl group
annotated property: has_related_synonym
annotated target: alkanoyl group
has db xref: ChEBI

Axiom
annotated source: acyl group
annotated property: has_related_synonym
annotated target: groupe acyle
has db xref: IUPAC

anion
type: Class
subclass of: ion
definition: A monoatomic or polyatomic species having one or more elementary charges of the electron.
has exact synonym: Anion
has exact synonym: anion
has OBO namespace: chebi_ontology
has_related_synonym: Anionen
has_related_synonym: aniones
has_related_synonym: anions
id: CHEBI:22563
in subset: 3 STAR

Axiom
annotated source: anion
annotated property: hasExactSynonym
annotated target: Anion
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: hasExactSynonym
annotated target: anion
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: hasExactSynonym
annotated target: anion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: Anionen
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: aniones
has db xref: ChEBI

Axiom
annotated source: anion
annotated property: has_related_synonym
annotated target: anions
has db xref: IUPAC

base
type: Class
subclass of: chemical role
definition: A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).
has db xref: KEGG:C00701
has exact synonym: Base
has exact synonym: base
has OBO namespace: chebi_ontology
has_related_synonym: Base1
has_related_synonym: Base2
has_related_synonym: Basen
has_related_synonym: Nucleobase
has_related_synonym: bases
id: CHEBI:22695
in subset: 3 STAR

Axiom
annotated source: base
annotated property: hasExactSynonym
annotated target: Base
has db xref: ChEBI

Axiom
annotated source: base
annotated property: hasExactSynonym
annotated target: base
has db xref: ChEBI

Axiom
annotated source: base
annotated property: hasExactSynonym
annotated target: base
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Base1
has db xref: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Base2
has db xref: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Basen
has db xref: ChEBI

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: Nucleobase
has db xref: KEGG_COMPOUND

Axiom
annotated source: base
annotated property: has_related_synonym
annotated target: bases
has db xref: ChEBI

NMR chemical shift reference compound
type: Class
subclass of: application
subclass of: chemical role
definition: Any compound that produces a peak used to reference an NMR spectrum during data pre-processing.
has OBO namespace: chebi_ontology
has_related_synonym: NMR chemical shift reference compounds
has_related_synonym: NMR chemical shift standard
has_related_synonym: NMR chemical shift standards
has_related_synonym: NMR internal standard
has_related_synonym: NMR internal standards
has_related_synonym: NMR reference standard
has_related_synonym: NMR reference standards
id: CHEBI:228364
in subset: 3 STAR

Axiom
annotated source: NMR chemical shift reference compound
annotated property: has_related_synonym
annotated target: NMR chemical shift reference compounds
has db xref: ChEBI

Axiom
annotated source: NMR chemical shift reference compound
annotated property: has_related_synonym
annotated target: NMR chemical shift standard
has db xref: ChEBI

Axiom
annotated source: NMR chemical shift reference compound
annotated property: has_related_synonym
annotated target: NMR chemical shift standards
has db xref: ChEBI

Axiom
annotated source: NMR chemical shift reference compound
annotated property: has_related_synonym
annotated target: NMR internal standard
has db xref: ChEBI

Axiom
annotated source: NMR chemical shift reference compound
annotated property: has_related_synonym
annotated target: NMR internal standards
has db xref: ChEBI

Axiom
annotated source: NMR chemical shift reference compound
annotated property: has_related_synonym
annotated target: NMR reference standard
has db xref: ChEBI

Axiom
annotated source: NMR chemical shift reference compound
annotated property: has_related_synonym
annotated target: NMR reference standards
has db xref: ChEBI

carbamoyl group
type: Class
subclass of: univalent carboacyl group
subclass of: Restriction
  on property: is substituent group from
  some values from: carbamic acid
definition: The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid.
charge: 0
formula: CH2NO
mass: 44.03272
monoisotopicmass: 44.01364
smiles: *C(N)=O
has db xref: PMID:24168430
has exact synonym: carbamoyl
has OBO namespace: chebi_ontology
has_related_synonym: -C(O)NH2
has_related_synonym: -CONH2
has_related_synonym: aminocarbonyl
has_related_synonym: carbamyl
has_related_synonym: carbamyl group
has_related_synonym: carboxamide
id: CHEBI:23004
in subset: 3 STAR

Axiom
annotated source: carbamoyl group
annotated property: hasDbXref
annotated target: PMID:24168430
source: Europe PMC

Axiom
annotated source: carbamoyl group
annotated property: hasExactSynonym
annotated target: carbamoyl
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: -C(O)NH2
has db xref: ChEBI

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: -CONH2
has db xref: IUPAC

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: aminocarbonyl
has db xref: IUPAC

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: carbamyl
has db xref: ChEBI

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: carbamyl group
has db xref: ChEBI

Axiom
annotated source: carbamoyl group
annotated property: has_related_synonym
annotated target: carboxamide
has db xref: IUPAC

carbon oxide
type: Class
subclass of: organic oxide
subclass of: organooxygen compound

carbonyl group
type: Class
subclass of: organodiyl group
charge: 0
formula: CO
mass: 28.01010
monoisotopicmass: 27.99491
smiles: O=C(*)*
has exact synonym: carbonyl
has exact synonym: carbonyl group
has OBO namespace: chebi_ontology
has_related_synonym: >C=O
id: CHEBI:23019
in subset: 3 STAR

Axiom
annotated source: carbonyl group
annotated property: hasExactSynonym
annotated target: carbonyl
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbonyl group
annotated property: hasExactSynonym
annotated target: carbonyl group
has db xref: ChEBI

Axiom
annotated source: carbonyl group
annotated property: hasExactSynonym
annotated target: carbonyl group
has db xref: UniProt

Axiom
annotated source: carbonyl group
annotated property: has_related_synonym
annotated target: >C=O
has db xref: IUPAC

chloride salt
type: Class
subclass of: chlorine molecular entity
subclass of: halide salt

chlorine molecular entity
type: Class
subclass of: halogen molecular entity

cofactor
type: Class
subclass of: biochemical role
definition: An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
has db xref: Wikipedia:Cofactor_(biochemistry)
has exact synonym: cofactor
has exact synonym: cofactors
has OBO namespace: chebi_ontology
id: CHEBI:23357
in subset: 3 STAR

Axiom
annotated source: cofactor
annotated property: hasExactSynonym
annotated target: cofactor
has db xref: IUPAC

Axiom
annotated source: cofactor
annotated property: hasExactSynonym
annotated target: cofactors
has db xref: IUPAC
has synonym type: IUPAC NAME

molecular entity
type: Class
subclass of: chemical entity
definition: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
has exact synonym: molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: entidad molecular
has_related_synonym: entidades moleculares
has_related_synonym: entite moleculaire
has_related_synonym: molecular entities
has_related_synonym: molekulare Entitaet
id: CHEBI:23367
in subset: 3 STAR

Axiom
annotated source: molecular entity
annotated property: hasExactSynonym
annotated target: molecular entity
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidad molecular
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entidades moleculares
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: entite moleculaire
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molecular entities
has db xref: IUPAC

Axiom
annotated source: molecular entity
annotated property: has_related_synonym
annotated target: molekulare Entitaet
has db xref: ChEBI

monoatomic cation
type: Class
subclass of: monoatomic ion
subclass of: cation
has OBO namespace: chebi_ontology
has_related_synonym: monoatomic cations
id: CHEBI:23906
in subset: 3 STAR

Axiom
annotated source: monoatomic cation
annotated property: has_related_synonym
annotated target: monoatomic cations
has db xref: ChEBI

enzyme inhibitor
type: Class
subclass of: inhibitor
subclass of: biochemical role
definition: A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.
has exact synonym: enzyme inhibitor
has OBO namespace: chebi_ontology
has_related_synonym: enzyme inhibitors
has_related_synonym: inhibidor enzimatico
has_related_synonym: inhibidores enzimaticos
has_related_synonym: inhibiteur enzymatique
has_related_synonym: inhibiteurs enzymatiques
id: CHEBI:23924
in subset: 3 STAR

Axiom
annotated source: enzyme inhibitor
annotated property: hasExactSynonym
annotated target: enzyme inhibitor
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: enzyme inhibitors
has db xref: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibidor enzimatico
has db xref: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibidores enzimaticos
has db xref: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibiteur enzymatique
has db xref: ChEBI

Axiom
annotated source: enzyme inhibitor
annotated property: has_related_synonym
annotated target: inhibiteurs enzymatiques
has db xref: ChEBI

chemical entity
type: Class
subclass of: material entity
definition: A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
has exact synonym: chemical entity
has OBO namespace: chebi_ontology
id: CHEBI:24431
in subset: 3 STAR

Axiom
annotated source: chemical entity
annotated property: hasExactSynonym
annotated target: chemical entity
has db xref: UniProt

biological role
type: Class
subclass of: role
definition: A role played by the molecular entity or part thereof within a biological context.
has OBO namespace: chebi_ontology
has_related_synonym: biological function
id: CHEBI:24432
in subset: 3 STAR

Axiom
annotated source: biological role
annotated property: has_related_synonym
annotated target: biological function
has db xref: ChEBI

group
type: Class
subclass of: chemical entity
subclass of: Restriction
  on property: has part
  some values from: atom
definition: A defined linked collection of atoms or a single atom within a molecular entity.
has exact synonym: group
has OBO namespace: chebi_ontology
has_related_synonym: Gruppe
has_related_synonym: Rest
has_related_synonym: groupe
has_related_synonym: grupo
has_related_synonym: grupos
id: CHEBI:24433
in subset: 3 STAR

Axiom
annotated source: group
annotated property: hasExactSynonym
annotated target: group
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: Gruppe
has db xref: ChEBI

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: Rest
has db xref: ChEBI

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: groupe
has db xref: IUPAC

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: grupo
has db xref: IUPAC

Axiom
annotated source: group
annotated property: has_related_synonym
annotated target: grupos
has db xref: IUPAC

halogen molecular entity
type: Class
subclass of: p-block molecular entity

proton
type: Class
subclass of: hydron
subclass of: nucleon
definition: Nuclear particle of charge number +1, spin 1/2 and rest mass of 1.007276470(12) u.
charge: +1
formula: [1H]
inchi: InChI=1S/p+1/i/hH
inchikey: GPRLSGONYQIRFK-FTGQXOHASA-N
mass: 1.007
monoisotopicmass: 1.00728
smiles: [1H+]
has db xref: CAS:12408-02-5
has db xref: KEGG:C00080
has exact synonym: protium(1+)
has exact synonym: proton
has OBO namespace: chebi_ontology
has_related_synonym: (1)1H(+)
has_related_synonym: (1)H(+)
has_related_synonym: p
has_related_synonym: p(+)
id: CHEBI:24636
in subset: 3 STAR

Axiom
annotated source: proton
annotated property: hasDbXref
annotated target: CAS:12408-02-5
source: ChemIDplus

Axiom
annotated source: proton
annotated property: hasDbXref
annotated target: CAS:12408-02-5
source: NIST Chemistry WebBook

Axiom
annotated source: proton
annotated property: hasExactSynonym
annotated target: protium(1+)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: proton
annotated property: hasExactSynonym
annotated target: proton
has db xref: ChEBI

Axiom
annotated source: proton
annotated property: hasExactSynonym
annotated target: proton
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: proton
annotated property: has_related_synonym
annotated target: (1)1H(+)
has db xref: IUPAC

Axiom
annotated source: proton
annotated property: has_related_synonym
annotated target: (1)H(+)
has db xref: IUPAC

Axiom
annotated source: proton
annotated property: has_related_synonym
annotated target: p
has db xref: IUPAC

Axiom
annotated source: proton
annotated property: has_related_synonym
annotated target: p(+)
has db xref: IUPAC

hydroxides
type: Class
subclass of: oxygen molecular entity
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
subclass of: Restriction
  on property: has part
  some values from: hydroxy group
definition: Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
has OBO namespace: chebi_ontology
id: CHEBI:24651
in subset: 3 STAR

oxoacid
type: Class
subclass of: hydroxides
subclass of: Restriction
  on property: has role
  some values from: Bronsted acid
definition: A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
has exact synonym: oxoacid
has exact synonym: oxoacids
has OBO namespace: chebi_ontology
has_related_synonym: oxacids
has_related_synonym: oxiacids
has_related_synonym: oxo acid
has_related_synonym: oxy-acids
has_related_synonym: oxyacids
id: CHEBI:24833
in subset: 3 STAR

Axiom
annotated source: oxoacid
annotated property: hasExactSynonym
annotated target: oxoacid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxoacid
annotated property: hasExactSynonym
annotated target: oxoacids
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxacids
has db xref: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxiacids
has db xref: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxo acid
has db xref: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxy-acids
has db xref: ChEBI

Axiom
annotated source: oxoacid
annotated property: has_related_synonym
annotated target: oxyacids
has db xref: ChEBI

inorganic anion
type: Class
subclass of: anion
subclass of: inorganic ion
has OBO namespace: chebi_ontology
has_related_synonym: inorganic anions
id: CHEBI:24834
in subset: 3 STAR

Axiom
annotated source: inorganic anion
annotated property: has_related_synonym
annotated target: inorganic anions
has db xref: ChEBI

inorganic molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity that contains no carbon.
has OBO namespace: chebi_ontology
has_related_synonym: anorganische Verbindungen
has_related_synonym: inorganic compounds
has_related_synonym: inorganic entity
has_related_synonym: inorganic molecular entities
has_related_synonym: inorganics
id: CHEBI:24835
in subset: 3 STAR

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: anorganische Verbindungen
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganic compounds
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganic entity
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganic molecular entities
has db xref: ChEBI

Axiom
annotated source: inorganic molecular entity
annotated property: has_related_synonym
annotated target: inorganics
has db xref: ChEBI

inorganic salt
type: Class
subclass of: inorganic molecular entity
subclass of: salt

salt
type: Class
subclass of: heteroatomic molecular entity
definition: A salt is an assembly of cations and anions.
has exact synonym: salt
has_related_synonym: Salz
has_related_synonym: Salze
has_related_synonym: ionic compound
has_related_synonym: ionic compounds
has_related_synonym: sal
has_related_synonym: sales
has_related_synonym: salts
has_related_synonym: sel
has_related_synonym: sels

monoatomic ion
type: Class
subclass of: ion
subclass of: monoatomic entity
has OBO namespace: chebi_ontology
has_related_synonym: monoatomic ions
id: CHEBI:24867
in subset: 3 STAR

Axiom
annotated source: monoatomic ion
annotated property: has_related_synonym
annotated target: monoatomic ions
has db xref: ChEBI

ion
type: Class
subclass of: molecular entity
definition: A molecular entity having a net electric charge.
has exact synonym: Ion
has exact synonym: ion
has OBO namespace: chebi_ontology
has_related_synonym: Ionen
has_related_synonym: iones
has_related_synonym: ions
id: CHEBI:24870
in subset: 3 STAR

Axiom
annotated source: ion
annotated property: hasExactSynonym
annotated target: Ion
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: hasExactSynonym
annotated target: ion
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: hasExactSynonym
annotated target: ion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: Ionen
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: iones
has db xref: ChEBI

Axiom
annotated source: ion
annotated property: has_related_synonym
annotated target: ions
has db xref: ChEBI

iron molecular entity
type: Class
subclass of: iron group molecular entity
has exact synonym: iron molecular entity
has_related_synonym: iron compounds
has_related_synonym: iron molecular entities

metabolite
type: Class
subclass of: biochemical role
definition: Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
has alternative id: CHEBI:26619
has alternative id: CHEBI:35220
has exact synonym: metabolite
has OBO namespace: chebi_ontology
has_related_synonym: metabolites
has_related_synonym: primary metabolites
has_related_synonym: secondary metabolites
id: CHEBI:25212
in subset: 3 STAR

Axiom
annotated source: metabolite
annotated property: hasExactSynonym
annotated target: metabolite
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: metabolite
annotated property: has_related_synonym
annotated target: metabolites
has db xref: ChEBI

Axiom
annotated source: metabolite
annotated property: has_related_synonym
annotated target: primary metabolites
has db xref: ChEBI

Axiom
annotated source: metabolite
annotated property: has_related_synonym
annotated target: secondary metabolites
has db xref: ChEBI

elemental molecule
type: Class
subclass of: molecule
subclass of: elemental molecular entity
definition: A molecule all atoms of which have the same atomic number.
has_related_synonym: homoatomic molecule
has_related_synonym: homoatomic molecules

molecule
type: Class
subclass of: polyatomic entity
definition: Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
has exact synonym: molecule
has OBO namespace: chebi_ontology
has_related_synonym: Molekuel
has_related_synonym: molecula
has_related_synonym: molecules
has_related_synonym: neutral molecular compounds
id: CHEBI:25367
in subset: 3 STAR

Axiom
annotated source: molecule
annotated property: hasExactSynonym
annotated target: molecule
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: Molekuel
has db xref: ChEBI

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: molecula
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: molecules
has db xref: IUPAC

Axiom
annotated source: molecule
annotated property: has_related_synonym
annotated target: neutral molecular compounds
has db xref: IUPAC

monoatomic monocation
type: Class
subclass of: monoatomic cation
charge: +1
mass: 0.00000
smiles: [*+]
has OBO namespace: chebi_ontology
has_related_synonym: monoatomic monocations
has_related_synonym: monovalent inorganic cations
id: CHEBI:25414
in subset: 3 STAR

Axiom
annotated source: monoatomic monocation
annotated property: has_related_synonym
annotated target: monoatomic monocations
has db xref: ChEBI

Axiom
annotated source: monoatomic monocation
annotated property: has_related_synonym
annotated target: monovalent inorganic cations
has db xref: ChEBI

nitrogen atom
type: Class
subclass of: nonmetal atom
subclass of: pnictogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: N
mass: 14.007
monoisotopicmass: 14.00307
has db xref: WebElements:N
has exact synonym: nitrogen
has OBO namespace: chebi_ontology
has_related_synonym: 7N
has_related_synonym: N
has_related_synonym: Stickstoff
has_related_synonym: azote
has_related_synonym: nitrogen
has_related_synonym: nitrogeno
id: CHEBI:25555
in subset: 3 STAR

Axiom
annotated source: nitrogen atom
annotated property: hasExactSynonym
annotated target: nitrogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: 7N
has db xref: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: N
has db xref: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: Stickstoff
has db xref: ChEBI

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: azote
has db xref: IUPAC

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: nitrogen
has db xref: ChEBI

Axiom
annotated source: nitrogen atom
annotated property: has_related_synonym
annotated target: nitrogeno
has db xref: ChEBI

nonmetal atom
type: Class
subclass of: atom
has exact synonym: nonmetal
has OBO namespace: chebi_ontology
has_related_synonym: Nichtmetall
has_related_synonym: Nichtmetalle
has_related_synonym: no metal
has_related_synonym: no metales
has_related_synonym: non-metal
has_related_synonym: non-metaux
has_related_synonym: nonmetal
has_related_synonym: nonmetals
id: CHEBI:25585
in subset: 3 STAR

Axiom
annotated source: nonmetal atom
annotated property: hasExactSynonym
annotated target: nonmetal
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: Nichtmetall
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: Nichtmetalle
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: no metal
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: no metales
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: non-metal
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: non-metaux
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: nonmetal
has db xref: ChEBI

Axiom
annotated source: nonmetal atom
annotated property: has_related_synonym
annotated target: nonmetals
has db xref: ChEBI

organic anion
type: Class
subclass of: anion
subclass of: organic ion
definition: Any organic ion with a net negative charge.
has OBO namespace: chebi_ontology
has_related_synonym: organic anions
id: CHEBI:25696
in subset: 3 STAR

Axiom
annotated source: organic anion
annotated property: has_related_synonym
annotated target: organic anions
has db xref: ChEBI

organic cation
type: Class
subclass of: organic ion
subclass of: cation
definition: Any organic ion with a net positive charge.
has OBO namespace: chebi_ontology
has_related_synonym: organic cations
id: CHEBI:25697
in subset: 3 STAR

Axiom
annotated source: organic cation
annotated property: has_related_synonym
annotated target: organic cations
has db xref: ChEBI

organic ion
type: Class
subclass of: ion
subclass of: organic molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: organic ions
id: CHEBI:25699
in subset: 3 STAR

Axiom
annotated source: organic ion
annotated property: has_related_synonym
annotated target: organic ions
has db xref: ChEBI

organic oxide
type: Class
subclass of: oxide
subclass of: organic molecule

oxide
type: Class
subclass of: oxygen molecular entity
subclass of: heteroatomic molecular entity
definition: An oxide is a chemical compound of oxygen with other chemical elements.
has exact synonym: oxide
has OBO namespace: chebi_ontology
has_related_synonym: oxides
id: CHEBI:25741
in subset: 3 STAR

Axiom
annotated source: oxide
annotated property: hasExactSynonym
annotated target: oxide
has db xref: ChEBI

Axiom
annotated source: oxide
annotated property: has_related_synonym
annotated target: oxides
has db xref: ChEBI

oxygen atom
type: Class
subclass of: nonmetal atom
subclass of: chalcogen
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: O
inchi: InChI=1S/O
inchikey: QVGXLLKOCUKJST-UHFFFAOYSA-N
mass: 15.99940
monoisotopicmass: 15.99491
smiles: [O]
has db xref: KEGG:C00007
has db xref: WebElements:O
has exact synonym: oxygen
has OBO namespace: chebi_ontology
has_related_synonym: 8O
has_related_synonym: O
has_related_synonym: Sauerstoff
has_related_synonym: oxigeno
has_related_synonym: oxygen
has_related_synonym: oxygene
id: CHEBI:25805
in subset: 3 STAR

Axiom
annotated source: oxygen atom
annotated property: hasExactSynonym
annotated target: oxygen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: 8O
has db xref: IUPAC

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: O
has db xref: IUPAC

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: Sauerstoff
has db xref: ChEBI

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: oxigeno
has db xref: ChEBI

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: oxygen
has db xref: ChEBI

Axiom
annotated source: oxygen atom
annotated property: has_related_synonym
annotated target: oxygene
has db xref: ChEBI

oxygen molecular entity
type: Class
subclass of: chalcogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: oxygen atom
has exact synonym: oxygen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: oxygen molecular entities
id: CHEBI:25806
in subset: 3 STAR

Axiom
annotated source: oxygen molecular entity
annotated property: hasExactSynonym
annotated target: oxygen molecular entity
has db xref: ChEBI

Axiom
annotated source: oxygen molecular entity
annotated property: has_related_synonym
annotated target: oxygen molecular entities
has db xref: ChEBI

sodium chloride
type: Class
subclass of: inorganic chloride
subclass of: inorganic sodium salt

sodium molecular entity
type: Class
subclass of: alkali metal molecular entity
has_related_synonym: sodium compounds
has_related_synonym: sodium molecular entities

sodium salt
type: Class
subclass of: sodium molecular entity
subclass of: alkali metal salt

transition element atom
type: Class
subclass of: metal atom
definition: An element whose atom has an incomplete d sub-shell, or which can give rise to cations with an incomplete d sub-shell.
has exact synonym: transition element
has_related_synonym: Uebergangselement
has_related_synonym: Uebergangsmetalle
has_related_synonym: metal de transicion
has_related_synonym: metal de transition
has_related_synonym: metales de transicion
has_related_synonym: metaux de transition
has_related_synonym: transition element
has_related_synonym: transition elements
has_related_synonym: transition metal
has_related_synonym: transition metals

univalent carboacyl group
type: Class
subclass of: carboacyl group
definition: A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid.
has OBO namespace: chebi_ontology
has_related_synonym: univalent acyl group
has_related_synonym: univalent carboacyl groups
has_related_synonym: univalent carboxylic acyl groups
id: CHEBI:27207
in subset: 3 STAR

Axiom
annotated source: univalent carboacyl group
annotated property: has_related_synonym
annotated target: univalent acyl group
has db xref: ChEBI

Axiom
annotated source: univalent carboacyl group
annotated property: has_related_synonym
annotated target: univalent carboacyl groups
has db xref: ChEBI

Axiom
annotated source: univalent carboacyl group
annotated property: has_related_synonym
annotated target: univalent carboxylic acyl groups
has db xref: ChEBI

zwitterion
type: Class
subclass of: dipolar compound
definition: A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer).
has exact synonym: zwitterion
has exact synonym: zwitterions
has OBO namespace: chebi_ontology
has_related_synonym: compose zwitterionique
has_related_synonym: compuestos zwitterionicos
has_related_synonym: zwitteriones
has_related_synonym: zwitterionic compounds
id: CHEBI:27369
in subset: 3 STAR

Axiom
annotated source: zwitterion
annotated property: hasExactSynonym
annotated target: zwitterion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: zwitterion
annotated property: hasExactSynonym
annotated target: zwitterions
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: compose zwitterionique
has db xref: IUPAC

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: compuestos zwitterionicos
has db xref: IUPAC

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: zwitteriones
has db xref: IUPAC

Axiom
annotated source: zwitterion
annotated property: has_related_synonym
annotated target: zwitterionic compounds
has db xref: IUPAC

carbon atom
type: Class
subclass of: nonmetal atom
subclass of: carbon group element atom
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: C
inchi: InChI=1S/C
inchikey: OKTJSMMVPCPJKN-UHFFFAOYSA-N
mass: 12.01070
monoisotopicmass: 12.00000
smiles: [C]
has alternative id: CHEBI:23009
has alternative id: CHEBI:3399
has db xref: CAS:7440-44-0
has db xref: KEGG:C06265
has db xref: WebElements:C
has exact synonym: carbon
has OBO namespace: chebi_ontology
has_related_synonym: 6C
has_related_synonym: C
has_related_synonym: Carbon
has_related_synonym: Kohlenstoff
has_related_synonym: carbon
has_related_synonym: carbone
has_related_synonym: carbonium
has_related_synonym: carbono
id: CHEBI:27594
in subset: 3 STAR

Axiom
annotated source: carbon atom
annotated property: hasDbXref
annotated target: CAS:7440-44-0
source: ChemIDplus

Axiom
annotated source: carbon atom
annotated property: hasDbXref
annotated target: CAS:7440-44-0
source: KEGG COMPOUND

Axiom
annotated source: carbon atom
annotated property: hasExactSynonym
annotated target: carbon
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: 6C
has db xref: IUPAC

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: C
has db xref: IUPAC

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: C
has db xref: KEGG_COMPOUND

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: Carbon
has db xref: KEGG_COMPOUND

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: Kohlenstoff
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbon
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbone
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbonium
has db xref: ChEBI

Axiom
annotated source: carbon atom
annotated property: has_related_synonym
annotated target: carbono
has db xref: ChEBI

carbamic acid
type: Class
subclass of: organonitrogen compound
subclass of: carbon oxoacid
subclass of: one-carbon compound
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: carbamate
definition: A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised.
charge: 0
formula: CH3NO2
inchi: InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)
inchikey: KXDHJXZQYSOELW-UHFFFAOYSA-N
mass: 61.04006
monoisotopicmass: 61.01638
smiles: NC(O)=O
has alternative id: CHEBI:22504
has alternative id: CHEBI:23002
has alternative id: CHEBI:3386
has alternative id: CHEBI:44573
has db xref: Beilstein:1734754
has db xref: CAS:463-77-4
has db xref: DrugBank:DB04261
has db xref: Gmelin:130345
has db xref: KEGG:C01563
has db xref: PDBeChem:OUT
has db xref: Wikipedia:Carbamic_acid
has exact synonym: CARBAMIC ACID
has exact synonym: Carbamic acid
has exact synonym: carbamic acid
has OBO namespace: chebi_ontology
has_related_synonym: Aminoameisensaeure
has_related_synonym: Aminoformic acid
has_related_synonym: Carbamate
has_related_synonym: Carbamidsaeure
id: CHEBI:28616
in subset: 3 STAR

Axiom
annotated source: carbamic acid
annotated property: hasDbXref
annotated target: Beilstein:1734754
source: Beilstein

Axiom
annotated source: carbamic acid
annotated property: hasDbXref
annotated target: CAS:463-77-4
source: ChemIDplus

Axiom
annotated source: carbamic acid
annotated property: hasDbXref
annotated target: CAS:463-77-4
source: KEGG COMPOUND

Axiom
annotated source: carbamic acid
annotated property: hasDbXref
annotated target: Gmelin:130345
source: Gmelin

Axiom
annotated source: carbamic acid
annotated property: hasExactSynonym
annotated target: CARBAMIC ACID
has db xref: PDBeChem

Axiom
annotated source: carbamic acid
annotated property: hasExactSynonym
annotated target: Carbamic acid
has db xref: KEGG_COMPOUND

Axiom
annotated source: carbamic acid
annotated property: hasExactSynonym
annotated target: carbamic acid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Aminoameisensaeure
has db xref: ChEBI

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Aminoformic acid
has db xref: KEGG_COMPOUND

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Carbamate
has db xref: KEGG_COMPOUND

Axiom
annotated source: carbamic acid
annotated property: has_related_synonym
annotated target: Carbamidsaeure
has db xref: ChEBI

ammonium
type: Class
subclass of: nitrogen hydride
subclass of: onium cation
subclass of: monovalent inorganic cation
subclass of: Restriction
  on property: has role
  some values from: cofactor
subclass of: Restriction
  on property: has role
  some values from: Saccharomyces cerevisiae metabolite
subclass of: Restriction
  on property: has role
  some values from: Escherichia coli metabolite
subclass of: Restriction
  on property: has role
  some values from: human metabolite
subclass of: Restriction
  on property: is conjugate acid of
  some values from: ammonia
definition: An onium cation obtained by protonation of ammonia.
charge: +1
formula: H4N
inchi: InChI=1S/H3N/h1H3/p+1
inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-O
mass: 18.03850
monoisotopicmass: 18.03383
smiles: [H][N+]([H])([H])[H]
has alternative id: CHEBI:22534
has alternative id: CHEBI:49783
has alternative id: CHEBI:7435
has db xref: CAS:14798-03-9
has db xref: Gmelin:84
has db xref: KEGG:C01342
has db xref: MetaCyc:AMMONIUM
has db xref: MolBase:929
has db xref: PDBeChem:NH4
has db xref: PMID:11319011
has db xref: PMID:11341317
has db xref: PMID:12096804
has db xref: PMID:14512268
has db xref: PMID:14879753
has db xref: PMID:16345391
has db xref: PMID:16903292
has db xref: PMID:17392693
has db xref: PMID:18515490
has db xref: PMID:19199063
has db xref: PMID:19596600
has db xref: PMID:19682559
has db xref: PMID:19716251
has db xref: PMID:21993530
has db xref: PMID:22265469
has db xref: PMID:22524020
has db xref: PMID:22562341
has db xref: PMID:22631217
has db xref: Reaxys:16093784
has db xref: Wikipedia:Ammonium
has exact synonym: ammonium
has exact synonym: azanium
has OBO namespace: chebi_ontology
has_related_synonym: Ammonium(1+)
has_related_synonym: NH4(+)
has_related_synonym: NH4+
has_related_synonym: [NH4](+)
has_related_synonym: ammonium cation
has_related_synonym: ammonium ion
id: CHEBI:28938
in subset: 3 STAR

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: CAS:14798-03-9
source: ChemIDplus

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: CAS:14798-03-9
source: NIST Chemistry WebBook

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: Gmelin:84
source: Gmelin

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:11319011
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:11341317
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:12096804
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:14512268
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:14879753
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:16345391
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:16903292
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:17392693
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:18515490
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:19199063
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:19596600
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:19682559
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:19716251
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:21993530
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:22265469
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:22524020
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:22562341
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: PMID:22631217
source: Europe PMC

Axiom
annotated source: ammonium
annotated property: hasDbXref
annotated target: Reaxys:16093784
source: Reaxys

Axiom
annotated source: ammonium
annotated property: hasExactSynonym
annotated target: ammonium
has db xref: ChEBI

Axiom
annotated source: ammonium
annotated property: hasExactSynonym
annotated target: ammonium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonium
annotated property: hasExactSynonym
annotated target: azanium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: Ammonium(1+)
has db xref: ChemIDplus

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: NH4(+)
has db xref: IUPAC

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: NH4(+)
has db xref: UniProt

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: NH4+
has db xref: KEGG_COMPOUND

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: [NH4](+)
has db xref: MolBase

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: ammonium cation
has db xref: ChemIDplus

Axiom
annotated source: ammonium
annotated property: has_related_synonym
annotated target: ammonium ion
has db xref: PDBeChem

carboxylic acid anion
type: Class
subclass of: organic anion
subclass of: oxoanion
subclass of: Restriction
  on property: is conjugate base of
  some values from: carboxylic acid
definition: The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.
charge: -1
formula: CO2R
mass: 44.00950
monoisotopicmass: 43.98983
smiles: [O-]C([*])=O
has alternative id: CHEBI:13626
has alternative id: CHEBI:13945
has alternative id: CHEBI:23026
has alternative id: CHEBI:58657
has OBO namespace: chebi_ontology
has_related_synonym: a carboxylate
has_related_synonym: carboxylic acid anions
has_related_synonym: carboxylic anions
id: CHEBI:29067
in subset: 3 STAR

Axiom
annotated source: carboxylic acid anion
annotated property: has_related_synonym
annotated target: a carboxylate
has db xref: UniProt

Axiom
annotated source: carboxylic acid anion
annotated property: has_related_synonym
annotated target: carboxylic acid anions
has db xref: ChEBI

Axiom
annotated source: carboxylic acid anion
annotated property: has_related_synonym
annotated target: carboxylic anions
has db xref: ChEBI

azanide
type: Class
subclass of: nitrogen hydride
subclass of: monovalent inorganic anion
subclass of: Restriction
  on property: is conjugate acid of
  some values from: hydridonitrate(2-)
subclass of: Restriction
  on property: is conjugate base of
  some values from: ammonia
charge: -1
formula: H2N
inchi: InChI=1S/H2N/h1H2/q-1
inchikey: HYGWNUKOUCZBND-UHFFFAOYSA-N
mass: 16.02262
monoisotopicmass: 16.01927
smiles: [H][N-][H]
has exact synonym: amide
has exact synonym: azanide
has exact synonym: dihydridonitrate(1-)
has OBO namespace: chebi_ontology
has_related_synonym: NH2(-)
id: CHEBI:29337
in subset: 3 STAR

Axiom
annotated source: azanide
annotated property: hasExactSynonym
annotated target: amide
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: azanide
annotated property: hasExactSynonym
annotated target: azanide
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: azanide
annotated property: hasExactSynonym
annotated target: dihydridonitrate(1-)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: azanide
annotated property: has_related_synonym
annotated target: NH2(-)
has db xref: IUPAC

hydridonitrate(2-)
type: Class
subclass of: nitrogen hydride
subclass of: divalent inorganic anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: azanide
definition: A divalent inorganic anion resulting from the removal of two protons from ammonia.
charge: -2
formula: HN
inchi: InChI=1S/HN/h1H/q-2
inchikey: DZQYTNGKSBCIOE-UHFFFAOYSA-N
mass: 15.01468
monoisotopicmass: 15.01200
smiles: [N--][H]
has exact synonym: azanediide
has exact synonym: hydridonitrate(2-)
has OBO namespace: chebi_ontology
has_related_synonym: NH(2-)
has_related_synonym: imide
id: CHEBI:29340
in subset: 3 STAR

Axiom
annotated source: hydridonitrate(2-)
annotated property: hasExactSynonym
annotated target: azanediide
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydridonitrate(2-)
annotated property: hasExactSynonym
annotated target: hydridonitrate(2-)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydridonitrate(2-)
annotated property: has_related_synonym
annotated target: NH(2-)
has db xref: IUPAC

Axiom
annotated source: hydridonitrate(2-)
annotated property: has_related_synonym
annotated target: imide
has db xref: IUPAC

photon
type: Class
subclass of: boson
definition: Particle of zero charge, zero rest mass, spin quantum number 1, energy hnu and momentum hnu/c (h is the Planck constant, nu the frequency of radiation and c the speed of light), carrier of electromagnetic force.
charge: 0
mass: 0.0
monoisotopicmass: 0.0
smiles: *
has alternative id: CHEBI:10581
has alternative id: CHEBI:14383
has db xref: KEGG:C00205
has exact synonym: photon
has OBO namespace: chebi_ontology
has_related_synonym: Lichtquant
has_related_synonym: Light
has_related_synonym: foton
has_related_synonym: gamma
has_related_synonym: hnu
has_related_synonym: light quantum
id: CHEBI:30212
in subset: 3 STAR

Axiom
annotated source: photon
annotated property: hasExactSynonym
annotated target: photon
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: Lichtquant
has db xref: ChEBI

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: Light
has db xref: KEGG_COMPOUND

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: foton
has db xref: ChEBI

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: gamma
has db xref: IUPAC

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: hnu
has db xref: IUPAC

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: hnu
has db xref: UniProt

Axiom
annotated source: photon
annotated property: has_related_synonym
annotated target: light quantum
has db xref: ChEBI

alpha-particle
type: Class
subclass of: atomic nucleus
subclass of: helium(2+)
definition: Nucleus of the (4)He atom.
charge: +2
formula: [4He]
inchi: InChI=1S/He/q+2/i1+0
inchikey: LBDSXVIYZYSRII-IGMARMGPSA-N
mass: 4.002
monoisotopicmass: 4.00151
smiles: [4He++]
has db xref: Gmelin:53474
has exact synonym: alpha-particle
has exact synonym: helium-4(2+)
has OBO namespace: chebi_ontology
has_related_synonym: (4)He(2+)
has_related_synonym: alpha
id: CHEBI:30216
in subset: 3 STAR

Axiom
annotated source: alpha-particle
annotated property: hasDbXref
annotated target: Gmelin:53474
source: Gmelin

Axiom
annotated source: alpha-particle
annotated property: hasExactSynonym
annotated target: alpha-particle
has db xref: IUPAC

Axiom
annotated source: alpha-particle
annotated property: hasExactSynonym
annotated target: alpha-particle
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alpha-particle
annotated property: hasExactSynonym
annotated target: helium-4(2+)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alpha-particle
annotated property: has_related_synonym
annotated target: (4)He(2+)
has db xref: IUPAC

Axiom
annotated source: alpha-particle
annotated property: has_related_synonym
annotated target: alpha
has db xref: IUPAC

helium atom
type: Class
subclass of: noble gas atom
subclass of: s-block element atom
charge: 0
formula: He
inchi: InChI=1S/He
inchikey: SWQJXJOGLNCZEY-UHFFFAOYSA-N
mass: 4.00260
monoisotopicmass: 4.00260
smiles: [He]
has db xref: CAS:7440-59-7
has db xref: Drug_Central:4262
has db xref: Gmelin:16294
has db xref: WebElements:He
has exact synonym: helium
has OBO namespace: chebi_ontology
has_related_synonym: 2He
has_related_synonym: He
has_related_synonym: Helium
has_related_synonym: helio
has_related_synonym: helium
id: CHEBI:30217
in subset: 3 STAR

Axiom
annotated source: helium atom
annotated property: hasDbXref
annotated target: CAS:7440-59-7
source: NIST Chemistry WebBook

Axiom
annotated source: helium atom
annotated property: hasDbXref
annotated target: Drug_Central:4262
source: DrugCentral

Axiom
annotated source: helium atom
annotated property: hasDbXref
annotated target: Gmelin:16294
source: Gmelin

Axiom
annotated source: helium atom
annotated property: hasExactSynonym
annotated target: helium
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: helium atom
annotated property: has_related_synonym
annotated target: 2He
has db xref: IUPAC

Axiom
annotated source: helium atom
annotated property: has_related_synonym
annotated target: He
has db xref: IUPAC

Axiom
annotated source: helium atom
annotated property: has_related_synonym
annotated target: Helium
has db xref: ChEBI

Axiom
annotated source: helium atom
annotated property: has_related_synonym
annotated target: helio
has db xref: ChEBI

Axiom
annotated source: helium atom
annotated property: has_related_synonym
annotated target: helium
has db xref: ChEBI

neutron
type: Class
subclass of: nucleon
definition: Nuclear particle of zero charge, spin 1/2 and rest mass of 1.008664904(14) u.
charge: 0
mass: 1.008664904
has exact synonym: neutron
has OBO namespace: chebi_ontology
has_related_synonym: (1)0n
has_related_synonym: n
id: CHEBI:30222
in subset: 3 STAR

Axiom
annotated source: neutron
annotated property: hasExactSynonym
annotated target: neutron
has db xref: ChEBI

Axiom
annotated source: neutron
annotated property: hasExactSynonym
annotated target: neutron
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: neutron
annotated property: has_related_synonym
annotated target: (1)0n
has db xref: ChEBI

Axiom
annotated source: neutron
annotated property: has_related_synonym
annotated target: n
has db xref: IUPAC

monoatomic dication
type: Class
subclass of: monoatomic cation
charge: +2
mass: 0.00000
smiles: [*++]
has alternative id: CHEBI:23856
has alternative id: CHEBI:4665
has db xref: KEGG:C00572
has OBO namespace: chebi_ontology
has_related_synonym: Divalent cation
has_related_synonym: divalent inorganic cations
has_related_synonym: monoatomic dications
id: CHEBI:30412
in subset: 3 STAR

Axiom
annotated source: monoatomic dication
annotated property: has_related_synonym
annotated target: Divalent cation
has db xref: KEGG_COMPOUND

Axiom
annotated source: monoatomic dication
annotated property: has_related_synonym
annotated target: divalent inorganic cations
has db xref: ChEBI

Axiom
annotated source: monoatomic dication
annotated property: has_related_synonym
annotated target: monoatomic dications
has db xref: ChEBI

amide
type: Class
subclass of: nitrogen molecular entity
definition: An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
has alternative id: CHEBI:22473
has alternative id: CHEBI:2633
has db xref: KEGG:C00241
has exact synonym: Amide
has exact synonym: amides
has OBO namespace: chebi_ontology
id: CHEBI:32988
in subset: 3 STAR

Axiom
annotated source: amide
annotated property: hasExactSynonym
annotated target: Amide
has db xref: KEGG_COMPOUND

Axiom
annotated source: amide
annotated property: hasExactSynonym
annotated target: amides
has db xref: IUPAC
has synonym type: IUPAC NAME

application
type: Class
subclass of: role
definition: Intended use of the molecular entity or part thereof by humans.
has OBO namespace: chebi_ontology
id: CHEBI:33232
in subset: 3 STAR

fundamental particle
type: Class
subclass of: subatomic particle
definition: A particle not known to have substructure.
has exact synonym: elementary particle
has OBO namespace: chebi_ontology
has_related_synonym: elementary particles
id: CHEBI:33233
in subset: 3 STAR

Axiom
annotated source: fundamental particle
annotated property: hasExactSynonym
annotated target: elementary particle
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: fundamental particle
annotated property: has_related_synonym
annotated target: elementary particles
has db xref: ChEBI

monoatomic entity
type: Class
subclass of: elemental molecular entity
definition: A monoatomic entity is a molecular entity consisting of a single atom.
has OBO namespace: chebi_ontology
has_related_synonym: atomic entity
has_related_synonym: monoatomic entities
id: CHEBI:33238
in subset: 3 STAR

Axiom
annotated source: monoatomic entity
annotated property: has_related_synonym
annotated target: atomic entity
has db xref: ChEBI

Axiom
annotated source: monoatomic entity
annotated property: has_related_synonym
annotated target: monoatomic entities
has db xref: ChEBI

inorganic hydride
type: Class
subclass of: inorganic molecular entity
subclass of: hydrides
has OBO namespace: chebi_ontology
has_related_synonym: inorganic hydrides
id: CHEBI:33242
in subset: 3 STAR

Axiom
annotated source: inorganic hydride
annotated property: has_related_synonym
annotated target: inorganic hydrides
has db xref: ChEBI

inorganic group
type: Class
subclass of: group
definition: Any substituent group which does not contain carbon.
has OBO namespace: chebi_ontology
has_related_synonym: inorganic groups
id: CHEBI:33246
in subset: 3 STAR

Axiom
annotated source: inorganic group
annotated property: has_related_synonym
annotated target: inorganic groups
has db xref: ChEBI

organic group
type: Class
subclass of: group
subclass of: Restriction
  on property: is conjugate acid of
  some values from: organic anionic group
subclass of: Restriction
  on property: is conjugate base of
  some values from: organic cationic group
definition: Any substituent group or skeleton containing carbon.
has OBO namespace: chebi_ontology
has_related_synonym: organic groups
id: CHEBI:33247
in subset: 3 STAR

Axiom
annotated source: organic group
annotated property: has_related_synonym
annotated target: organic groups
has db xref: ChEBI

organyl group
type: Class
subclass of: organic univalent group
definition: Any organic substituent group, regardless of functional type, having one free valence at a carbon atom.
has exact synonym: organyl group
has exact synonym: organyl groups
has OBO namespace: chebi_ontology
has_related_synonym: groupe organyle
has_related_synonym: grupo organilo
has_related_synonym: grupos organilo
id: CHEBI:33249
in subset: 3 STAR

Axiom
annotated source: organyl group
annotated property: hasExactSynonym
annotated target: organyl group
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organyl group
annotated property: hasExactSynonym
annotated target: organyl groups
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organyl group
annotated property: has_related_synonym
annotated target: groupe organyle
has db xref: IUPAC

Axiom
annotated source: organyl group
annotated property: has_related_synonym
annotated target: grupo organilo
has db xref: IUPAC

Axiom
annotated source: organyl group
annotated property: has_related_synonym
annotated target: grupos organilo
has db xref: IUPAC

atom
type: Class
subclass of: chemical entity
subclass of: Restriction
  on property: has part
  some values from: electron
subclass of: Restriction
  on property: has part
  some values from: atomic nucleus
definition: A chemical entity constituting the smallest component of an element having the chemical properties of the element.
has alternative id: CHEBI:22671
has alternative id: CHEBI:23907
has exact synonym: atom
has OBO namespace: chebi_ontology
has_related_synonym: atome
has_related_synonym: atomo
has_related_synonym: atoms
has_related_synonym: atomus
has_related_synonym: element
has_related_synonym: elements
id: CHEBI:33250
in subset: 3 STAR

Axiom
annotated source: atom
annotated property: hasExactSynonym
annotated target: atom
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atome
has db xref: IUPAC

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atomo
has db xref: IUPAC

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atoms
has db xref: ChEBI

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: atomus
has db xref: ChEBI

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: element
has db xref: ChEBI

Axiom
annotated source: atom
annotated property: has_related_synonym
annotated target: elements
has db xref: ChEBI

monoatomic hydrogen
type: Class
subclass of: monoatomic entity
subclass of: elemental hydrogen
charge: 0
formula: H
inchi: InChI=1S/H
inchikey: YZCKVEUIGOORGS-UHFFFAOYSA-N
mass: 1.00794
monoisotopicmass: 1.00783
smiles: [H]
has OBO namespace: chebi_ontology
has_related_synonym: atomic hydrogen
id: CHEBI:33251
in subset: 3 STAR

Axiom
annotated source: monoatomic hydrogen
annotated property: has_related_synonym
annotated target: atomic hydrogen
has db xref: ChEBI

atomic nucleus
type: Class
subclass of: nuclear particle
subclass of: Restriction
  on property: has part
  some values from: nucleon
subclass of: Restriction
  on property: RO_0002493
  some values from: RBO_00002118
definition: A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.
has exact synonym: nucleus
has OBO namespace: chebi_ontology
has_related_synonym: Atomkern
has_related_synonym: Kern
has_related_synonym: noyau
has_related_synonym: noyau atomique
has_related_synonym: nuclei
has_related_synonym: nucleo
has_related_synonym: nucleo atomico
has_related_synonym: nucleus atomi
id: CHEBI:33252
in subset: 3 STAR

Axiom
annotated source: atomic nucleus
annotated property: hasExactSynonym
annotated target: nucleus
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: Atomkern
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: Kern
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: noyau
has db xref: IUPAC

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: noyau atomique
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nuclei
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nucleo
has db xref: IUPAC

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nucleo atomico
has db xref: ChEBI

Axiom
annotated source: atomic nucleus
annotated property: has_related_synonym
annotated target: nucleus atomi
has db xref: ChEBI

nucleon
type: Class
subclass of: baryon
subclass of: nuclear particle
definition: Heavy nuclear particle: proton or neutron.
has exact synonym: nucleon
has OBO namespace: chebi_ontology
has_related_synonym: Nukleon
has_related_synonym: Nukleonen
has_related_synonym: nucleons
id: CHEBI:33253
in subset: 3 STAR

Axiom
annotated source: nucleon
annotated property: hasExactSynonym
annotated target: nucleon
has db xref: IUPAC

Axiom
annotated source: nucleon
annotated property: hasExactSynonym
annotated target: nucleon
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: nucleon
annotated property: has_related_synonym
annotated target: Nukleon
has db xref: ChEBI

Axiom
annotated source: nucleon
annotated property: has_related_synonym
annotated target: Nukleonen
has db xref: ChEBI

Axiom
annotated source: nucleon
annotated property: has_related_synonym
annotated target: nucleons
has db xref: ChEBI

primary amide
type: Class
subclass of: amide
definition: A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
has exact synonym: primary amide
has exact synonym: primary amides
has OBO namespace: chebi_ontology
id: CHEBI:33256
in subset: 3 STAR

Axiom
annotated source: primary amide
annotated property: hasExactSynonym
annotated target: primary amide
has db xref: IUPAC

Axiom
annotated source: primary amide
annotated property: hasExactSynonym
annotated target: primary amides
has db xref: IUPAC
has synonym type: IUPAC NAME

elemental molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity all atoms of which have the same atomic number.
has OBO namespace: chebi_ontology
has_related_synonym: homoatomic entity
has_related_synonym: homoatomic molecular entities
has_related_synonym: homoatomic molecular entity
id: CHEBI:33259
in subset: 3 STAR

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic entity
has db xref: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic molecular entities
has db xref: ChEBI

Axiom
annotated source: elemental molecular entity
annotated property: has_related_synonym
annotated target: homoatomic molecular entity
has db xref: ChEBI

elemental hydrogen
type: Class
subclass of: inorganic molecular entity
subclass of: elemental molecular entity
subclass of: hydrogen molecular entity
has OBO namespace: chebi_ontology
id: CHEBI:33260
in subset: 3 STAR

elemental oxygen
type: Class
subclass of: inorganic molecular entity
subclass of: oxygen molecular entity
subclass of: elemental molecular entity

diatomic oxygen
type: Class
subclass of: elemental oxygen

diatomic nitrogen
type: Class
subclass of: elemental nitrogen

elemental nitrogen
type: Class
subclass of: elemental pnictogen
subclass of: nitrogen molecular entity

polyatomic anion
type: Class
subclass of: anion
subclass of: polyatomic ion
definition: An anion consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic anions
id: CHEBI:33273
in subset: 3 STAR

Axiom
annotated source: polyatomic anion
annotated property: has_related_synonym
annotated target: polyatomic anions
has db xref: ChEBI

nutrient
type: Class
subclass of: food component
definition: A nutrient is a food component that an organism uses to survive and grow.
has OBO namespace: chebi_ontology
has_related_synonym: nutrients
id: CHEBI:33284
in subset: 3 STAR

Axiom
annotated source: nutrient
annotated property: has_related_synonym
annotated target: nutrients
has db xref: ChEBI

heteroorganic entity
type: Class
subclass of: organic molecular entity
definition: A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
has OBO namespace: chebi_ontology
has_related_synonym: heteroorganic entities
has_related_synonym: organoelement compounds
id: CHEBI:33285
in subset: 3 STAR

Axiom
annotated source: heteroorganic entity
annotated property: has_related_synonym
annotated target: heteroorganic entities
has db xref: ChEBI

Axiom
annotated source: heteroorganic entity
annotated property: has_related_synonym
annotated target: organoelement compounds
has db xref: ChEBI

fuel
type: Class
subclass of: application

alkali metal molecular entity
type: Class
subclass of: s-block molecular entity
definition: A molecular entity containing one or more atoms of an alkali metal.
has_related_synonym: alkali metal molecular entities

pnictogen
type: Class
subclass of: p-block element atom
definition: Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
has exact synonym: pnictogens
has OBO namespace: chebi_ontology
has_related_synonym: group 15 elements
has_related_synonym: group V elements
has_related_synonym: nitrogenoideos
has_related_synonym: nitrogenoides
has_related_synonym: pnictogene
has_related_synonym: pnictogenes
id: CHEBI:33300
in subset: 3 STAR

Axiom
annotated source: pnictogen
annotated property: hasExactSynonym
annotated target: pnictogens
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: group 15 elements
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: group V elements
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: nitrogenoideos
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: nitrogenoides
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: pnictogene
has db xref: ChEBI

Axiom
annotated source: pnictogen
annotated property: has_related_synonym
annotated target: pnictogenes
has db xref: ChEBI

pnictogen molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: pnictogen
definition: A p-block molecular entity containing any pnictogen.
has exact synonym: pnictogen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: pnictogen molecular entities
id: CHEBI:33302
in subset: 3 STAR

Axiom
annotated source: pnictogen molecular entity
annotated property: hasExactSynonym
annotated target: pnictogen molecular entity
has db xref: ChEBI

Axiom
annotated source: pnictogen molecular entity
annotated property: has_related_synonym
annotated target: pnictogen molecular entities
has db xref: ChEBI

chalcogen
type: Class
subclass of: p-block element atom
definition: Any p-block element belonging to the group 16 family of the periodic table.
has db xref: PMID:17084588
has exact synonym: chalcogen
has exact synonym: chalcogens
has OBO namespace: chebi_ontology
has_related_synonym: Chalkogen
has_related_synonym: Chalkogene
has_related_synonym: anfigeno
has_related_synonym: anfigenos
has_related_synonym: calcogeno
has_related_synonym: calcogenos
has_related_synonym: chalcogene
has_related_synonym: chalcogenes
has_related_synonym: group 16 elements
has_related_synonym: group VI elements
id: CHEBI:33303
in subset: 3 STAR

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: chalcogenes
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: group 16 elements
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: group VI elements
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: hasDbXref
annotated target: PMID:17084588
source: Europe PMC

Axiom
annotated source: chalcogen
annotated property: hasExactSynonym
annotated target: chalcogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chalcogen
annotated property: hasExactSynonym
annotated target: chalcogens
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: Chalkogen
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: Chalkogene
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: anfigeno
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: anfigenos
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: calcogeno
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: calcogenos
has db xref: ChEBI

Axiom
annotated source: chalcogen
annotated property: has_related_synonym
annotated target: chalcogene
has db xref: ChEBI

chalcogen molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: chalcogen
definition: Any p-block molecular entity containing a chalcogen.
has exact synonym: chalcogen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: chalcogen compounds
has_related_synonym: chalcogen molecular entities
id: CHEBI:33304
in subset: 3 STAR

Axiom
annotated source: chalcogen molecular entity
annotated property: hasExactSynonym
annotated target: chalcogen molecular entity
has db xref: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: has_related_synonym
annotated target: chalcogen compounds
has db xref: ChEBI

Axiom
annotated source: chalcogen molecular entity
annotated property: has_related_synonym
annotated target: chalcogen molecular entities
has db xref: ChEBI

carbon group element atom
type: Class
subclass of: p-block element atom
has exact synonym: group 14 elements
has OBO namespace: chebi_ontology
has_related_synonym: carbon group element
has_related_synonym: carbon group elements
has_related_synonym: carbonoides
has_related_synonym: cristallogene
has_related_synonym: cristallogenes
has_related_synonym: group IV elements
id: CHEBI:33306
in subset: 3 STAR

Axiom
annotated source: carbon group element atom
annotated property: hasExactSynonym
annotated target: group 14 elements
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: carbon group element
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: carbon group elements
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: carbonoides
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: cristallogene
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: cristallogenes
has db xref: ChEBI

Axiom
annotated source: carbon group element atom
annotated property: has_related_synonym
annotated target: group IV elements
has db xref: ChEBI

noble gas atom
type: Class
subclass of: gas molecular entity
subclass of: nonmetal atom
subclass of: main group element atom
has exact synonym: noble gas
has exact synonym: noble gases
has OBO namespace: chebi_ontology
has_related_synonym: Edelgas
has_related_synonym: Edelgase
has_related_synonym: gas noble
has_related_synonym: gases nobles
has_related_synonym: gaz noble
has_related_synonym: gaz nobles
has_related_synonym: group 18 elements
has_related_synonym: group VIII elements
has_related_synonym: inert gases
has_related_synonym: noble gas
has_related_synonym: rare gases
id: CHEBI:33309
in subset: 3 STAR

Axiom
annotated source: noble gas atom
annotated property: hasExactSynonym
annotated target: noble gas
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: noble gas atom
annotated property: hasExactSynonym
annotated target: noble gases
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: Edelgas
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: Edelgase
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: gas noble
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: gases nobles
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: gaz noble
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: gaz nobles
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: group 18 elements
has db xref: IUPAC

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: group VIII elements
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: inert gases
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: noble gas
has db xref: ChEBI

Axiom
annotated source: noble gas atom
annotated property: has_related_synonym
annotated target: rare gases
has db xref: ChEBI

radon atom
type: Class
subclass of: noble gas atom
subclass of: p-block element atom
charge: 0
formula: Rn
inchi: InChI=1S/Rn
inchikey: SYUHGPGVQRZVTB-UHFFFAOYSA-N
mass: 222.00000
monoisotopicmass: 222.00000
smiles: [Rn]
has db xref: CAS:10043-92-2
has db xref: Gmelin:16242
has db xref: WebElements:Rn
has exact synonym: radon
has OBO namespace: chebi_ontology
has_related_synonym: 86Rn
has_related_synonym: Rn
has_related_synonym: niton
has_related_synonym: radium emanation
has_related_synonym: radon
id: CHEBI:33314
in subset: 3 STAR

Axiom
annotated source: radon atom
annotated property: hasDbXref
annotated target: CAS:10043-92-2
source: ChemIDplus

Axiom
annotated source: radon atom
annotated property: hasDbXref
annotated target: CAS:10043-92-2
source: NIST Chemistry WebBook

Axiom
annotated source: radon atom
annotated property: hasDbXref
annotated target: Gmelin:16242
source: Gmelin

Axiom
annotated source: radon atom
annotated property: hasExactSynonym
annotated target: radon
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: radon atom
annotated property: has_related_synonym
annotated target: 86Rn
has db xref: IUPAC

Axiom
annotated source: radon atom
annotated property: has_related_synonym
annotated target: Rn
has db xref: IUPAC

Axiom
annotated source: radon atom
annotated property: has_related_synonym
annotated target: niton
has db xref: ChemIDplus

Axiom
annotated source: radon atom
annotated property: has_related_synonym
annotated target: radium emanation
has db xref: ChemIDplus

Axiom
annotated source: radon atom
annotated property: has_related_synonym
annotated target: radon
has db xref: ChEBI

monoatomic helium
type: Class
subclass of: monoatomic entity
subclass of: elemental helium
charge: 0
formula: He
mass: 4.003
monoisotopicmass: 4.00260
has OBO namespace: chebi_ontology
has_related_synonym: elemental helium
id: CHEBI:33315
in subset: 3 STAR

Axiom
annotated source: monoatomic helium
annotated property: has_related_synonym
annotated target: elemental helium
has db xref: ChEBI

helium(2+)
type: Class
subclass of: monoatomic dication
subclass of: monoatomic helium
charge: +2
formula: He
inchi: InChI=1S/He/q+2
inchikey: LBDSXVIYZYSRII-UHFFFAOYSA-N
mass: 4.00260
monoisotopicmass: 4.00151
smiles: [He++]
has exact synonym: helium(2+)
has OBO namespace: chebi_ontology
has_related_synonym: He(2+)
id: CHEBI:33316
in subset: 3 STAR

Axiom
annotated source: helium(2+)
annotated property: hasExactSynonym
annotated target: helium(2+)
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: helium(2+)
annotated property: has_related_synonym
annotated target: He(2+)
has db xref: IUPAC

main group element atom
type: Class
subclass of: atom
definition: An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
has exact synonym: main group elements
has OBO namespace: chebi_ontology
has_related_synonym: Hauptgruppenelement
has_related_synonym: Hauptgruppenelemente
has_related_synonym: main group element
id: CHEBI:33318
in subset: 3 STAR

Axiom
annotated source: main group element atom
annotated property: hasExactSynonym
annotated target: main group elements
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: main group element atom
annotated property: has_related_synonym
annotated target: Hauptgruppenelement
has db xref: ChEBI

Axiom
annotated source: main group element atom
annotated property: has_related_synonym
annotated target: Hauptgruppenelemente
has db xref: ChEBI

Axiom
annotated source: main group element atom
annotated property: has_related_synonym
annotated target: main group element
has db xref: ChEBI

iron group element atom
type: Class
subclass of: d-block element atom
has exact synonym: group 8 elements
has_related_synonym: iron group element
has_related_synonym: iron group elements

elemental pnictogen
type: Class
subclass of: inorganic molecular entity
subclass of: elemental molecular entity
subclass of: pnictogen molecular entity

transition element molecular entity
type: Class
subclass of: molecular entity
definition: A molecular entity containing one or more atoms of a transition element.
has_related_synonym: transition element molecular entities
has_related_synonym: transition metal molecular entity

actinoid molecular entity
type: Class
subclass of: f-block molecular entity

uranium molecular entity
type: Class
subclass of: actinoid molecular entity

metal atom
type: Class
subclass of: atom
definition: An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.
has_related_synonym: elemental metal
has_related_synonym: elemental metals
has_related_synonym: metal element
has_related_synonym: metal elements
has_related_synonym: metals

alpha-amino-acid anion
type: Class
subclass of: amino-acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: alpha-amino acid
definition: An amino-acid anion obtained by deprotonation of any alpha-amino acid.
has exact synonym: alpha-amino-acid anion
has OBO namespace: chebi_ontology
has_related_synonym: alpha-amino acid anions
has_related_synonym: alpha-amino-acid anions
id: CHEBI:33558
in subset: 3 STAR

Axiom
annotated source: alpha-amino-acid anion
annotated property: hasExactSynonym
annotated target: alpha-amino-acid anion
has db xref: ChEBI

Axiom
annotated source: alpha-amino-acid anion
annotated property: has_related_synonym
annotated target: alpha-amino acid anions
has db xref: ChEBI

Axiom
annotated source: alpha-amino-acid anion
annotated property: has_related_synonym
annotated target: alpha-amino-acid anions
has db xref: ChEBI

s-block element atom
type: Class
subclass of: atom
has OBO namespace: chebi_ontology
has_related_synonym: s-block element
has_related_synonym: s-block elements
id: CHEBI:33559
in subset: 3 STAR

Axiom
annotated source: s-block element atom
annotated property: has_related_synonym
annotated target: s-block element
has db xref: ChEBI

Axiom
annotated source: s-block element atom
annotated property: has_related_synonym
annotated target: s-block elements
has db xref: ChEBI

p-block element atom
type: Class
subclass of: main group element atom
definition: Any main group element atom belonging to the p-block of the periodic table.
has OBO namespace: chebi_ontology
has_related_synonym: p-block element
has_related_synonym: p-block elements
id: CHEBI:33560
in subset: 3 STAR

Axiom
annotated source: p-block element atom
annotated property: has_related_synonym
annotated target: p-block element
has db xref: ChEBI

Axiom
annotated source: p-block element atom
annotated property: has_related_synonym
annotated target: p-block elements
has db xref: ChEBI

d-block element atom
type: Class
subclass of: transition element atom
has_related_synonym: d-block element
has_related_synonym: d-block elements

carboxylic acid
type: Class
subclass of: carbon oxoacid
subclass of: carbonyl compound
subclass of: organic acid
subclass of: Restriction
  on property: has part
  some values from: carboxy group
subclass of: Restriction
  on property: is conjugate acid of
  some values from: carboxylic acid anion
definition: A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.
charge: 0
formula: CHO2R
mass: 45.017
monoisotopicmass: 44.99765
smiles: OC([*])=O
has alternative id: CHEBI:13428
has alternative id: CHEBI:13627
has alternative id: CHEBI:23027
has db xref: PMID:17147560
has db xref: PMID:18433345
has db xref: Wikipedia:Carboxylic_acid
has exact synonym: carboxylic acid
has exact synonym: carboxylic acids
has OBO namespace: chebi_ontology
has_related_synonym: Carbonsaeure
has_related_synonym: Carbonsaeuren
has_related_synonym: Karbonsaeure
has_related_synonym: RC(=O)OH
has_related_synonym: acide carboxylique
has_related_synonym: acides carboxyliques
has_related_synonym: acido carboxilico
has_related_synonym: acidos carboxilicos
id: CHEBI:33575
in subset: 3 STAR

Axiom
annotated source: carboxylic acid
annotated property: hasDbXref
annotated target: PMID:17147560
source: Europe PMC

Axiom
annotated source: carboxylic acid
annotated property: hasDbXref
annotated target: PMID:18433345
source: Europe PMC

Axiom
annotated source: carboxylic acid
annotated property: hasExactSynonym
annotated target: carboxylic acid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxylic acid
annotated property: hasExactSynonym
annotated target: carboxylic acids
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: Carbonsaeure
has db xref: ChEBI

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: Carbonsaeuren
has db xref: ChEBI

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: Karbonsaeure
has db xref: ChEBI

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: RC(=O)OH
has db xref: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acide carboxylique
has db xref: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acides carboxyliques
has db xref: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acido carboxilico
has db xref: IUPAC

Axiom
annotated source: carboxylic acid
annotated property: has_related_synonym
annotated target: acidos carboxilicos
has db xref: IUPAC

main group molecular entity
type: Class
subclass of: molecular entity
subclass of: Restriction
  on property: has part
  some values from: main group element atom
definition: A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
has OBO namespace: chebi_ontology
has_related_synonym: main group compounds
has_related_synonym: main group molecular entities
id: CHEBI:33579
in subset: 3 STAR

Axiom
annotated source: main group molecular entity
annotated property: has_related_synonym
annotated target: main group compounds
has db xref: ChEBI

Axiom
annotated source: main group molecular entity
annotated property: has_related_synonym
annotated target: main group molecular entities
has db xref: ChEBI

carbon group molecular entity
type: Class
subclass of: p-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: carbon group element atom
has exact synonym: carbon group molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: carbon group molecular entities
id: CHEBI:33582
in subset: 3 STAR

Axiom
annotated source: carbon group molecular entity
annotated property: hasExactSynonym
annotated target: carbon group molecular entity
has db xref: ChEBI

Axiom
annotated source: carbon group molecular entity
annotated property: has_related_synonym
annotated target: carbon group molecular entities
has db xref: ChEBI

noble gas molecular entity
type: Class
subclass of: main group molecular entity
subclass of: Restriction
  on property: has part
  some values from: noble gas atom
definition: A main group molecular entity containing one or more atoms of any noble gas.
has exact synonym: noble gas molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: noble gas compounds
has_related_synonym: noble gas molecular entities
id: CHEBI:33583
in subset: 3 STAR

Axiom
annotated source: noble gas molecular entity
annotated property: hasExactSynonym
annotated target: noble gas molecular entity
has db xref: ChEBI

Axiom
annotated source: noble gas molecular entity
annotated property: has_related_synonym
annotated target: noble gas compounds
has db xref: ChEBI

Axiom
annotated source: noble gas molecular entity
annotated property: has_related_synonym
annotated target: noble gas molecular entities
has db xref: ChEBI

hydrogen molecular entity
type: Class
subclass of: s-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: hydrogen atom
has OBO namespace: chebi_ontology
has_related_synonym: hydrogen compounds
has_related_synonym: hydrogen molecular entities
id: CHEBI:33608
in subset: 3 STAR

Axiom
annotated source: hydrogen molecular entity
annotated property: has_related_synonym
annotated target: hydrogen compounds
has db xref: ChEBI

Axiom
annotated source: hydrogen molecular entity
annotated property: has_related_synonym
annotated target: hydrogen molecular entities
has db xref: ChEBI

s-block molecular entity
type: Class
subclass of: main group molecular entity
subclass of: Restriction
  on property: has part
  some values from: s-block element atom
definition: An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
has exact synonym: s-block molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: s-block compounds
has_related_synonym: s-block molecular entities
id: CHEBI:33674
in subset: 3 STAR

Axiom
annotated source: s-block molecular entity
annotated property: hasExactSynonym
annotated target: s-block molecular entity
has db xref: ChEBI

Axiom
annotated source: s-block molecular entity
annotated property: has_related_synonym
annotated target: s-block compounds
has db xref: ChEBI

Axiom
annotated source: s-block molecular entity
annotated property: has_related_synonym
annotated target: s-block molecular entities
has db xref: ChEBI

p-block molecular entity
type: Class
subclass of: main group molecular entity
subclass of: Restriction
  on property: has part
  some values from: p-block element atom
definition: A main group molecular entity that contains one or more atoms of a p-block element.
has OBO namespace: chebi_ontology
has_related_synonym: p-block compounds
has_related_synonym: p-block molecular entities
has_related_synonym: p-block molecular entitiy
id: CHEBI:33675
in subset: 3 STAR

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block compounds
has db xref: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block molecular entities
has db xref: ChEBI

Axiom
annotated source: p-block molecular entity
annotated property: has_related_synonym
annotated target: p-block molecular entitiy
has db xref: ChEBI

d-block molecular entity
type: Class
subclass of: transition element molecular entity
definition: A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element.
has exact synonym: d-block molecular entity
has_related_synonym: d-block compounds
has_related_synonym: d-block molecular entities

f-block molecular entity
type: Class
subclass of: transition element molecular entity

helium molecular entity
type: Class
subclass of: noble gas molecular entity
subclass of: s-block molecular entity
subclass of: Restriction
  on property: has part
  some values from: helium atom
has exact synonym: helium molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: helium compounds
has_related_synonym: helium molecular entities
id: CHEBI:33679
in subset: 3 STAR

Axiom
annotated source: helium molecular entity
annotated property: hasExactSynonym
annotated target: helium molecular entity
has db xref: ChEBI

Axiom
annotated source: helium molecular entity
annotated property: has_related_synonym
annotated target: helium compounds
has db xref: ChEBI

Axiom
annotated source: helium molecular entity
annotated property: has_related_synonym
annotated target: helium molecular entities
has db xref: ChEBI

elemental helium
type: Class
subclass of: helium molecular entity
has OBO namespace: chebi_ontology
id: CHEBI:33680
in subset: 3 STAR

hydrides
type: Class
subclass of: hydrogen molecular entity
subclass of: heteroatomic molecular entity
definition: Hydrides are chemical compounds of hydrogen with other chemical elements.
has OBO namespace: chebi_ontology
id: CHEBI:33692
in subset: 3 STAR

oxygen hydride
type: Class
subclass of: chalcogen hydride

biomacromolecule
type: Class
subclass of: macromolecule
subclass of: organic molecular entity
definition: A macromolecule formed by a living organism.
has exact synonym: biopolymer
has OBO namespace: chebi_ontology
has_related_synonym: Biopolymere
has_related_synonym: biomacromolecules
has_related_synonym: biopolymers
id: CHEBI:33694
in subset: 3 STAR

Axiom
annotated source: biomacromolecule
annotated property: hasExactSynonym
annotated target: biopolymer
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: biomacromolecule
annotated property: has_related_synonym
annotated target: Biopolymere
has db xref: ChEBI

Axiom
annotated source: biomacromolecule
annotated property: has_related_synonym
annotated target: biomacromolecules
has db xref: ChEBI

Axiom
annotated source: biomacromolecule
annotated property: has_related_synonym
annotated target: biopolymers
has db xref: ChEBI

information biomacromolecule
type: Class
subclass of: biomacromolecule
has OBO namespace: chebi_ontology
has_related_synonym: genetically encoded biomacromolecules
has_related_synonym: genetically encoded biopolymers
has_related_synonym: information biomacromolecules
has_related_synonym: information biopolymers
has_related_synonym: information macromolecule
has_related_synonym: information macromolecules
id: CHEBI:33695
in subset: 3 STAR

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: genetically encoded biomacromolecules
has db xref: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: genetically encoded biopolymers
has db xref: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information biomacromolecules
has db xref: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information biopolymers
has db xref: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information macromolecule
has db xref: ChEBI

Axiom
annotated source: information biomacromolecule
annotated property: has_related_synonym
annotated target: information macromolecules
has db xref: ChEBI

proteinogenic amino-acid residue
type: Class
subclass of: alpha-amino-acid residue
has OBO namespace: chebi_ontology
has_related_synonym: canonical amino-acid residue
has_related_synonym: canonical amino-acid residues
has_related_synonym: common amino acid residues
has_related_synonym: proteinogenic amino-acid residues
has_related_synonym: standard amino acid residues
has_related_synonym: standard amino-acid residues
id: CHEBI:33700
in subset: 3 STAR

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: canonical amino-acid residue
has db xref: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: canonical amino-acid residues
has db xref: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: common amino acid residues
has db xref: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: proteinogenic amino-acid residues
has db xref: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: standard amino acid residues
has db xref: ChEBI

Axiom
annotated source: proteinogenic amino-acid residue
annotated property: has_related_synonym
annotated target: standard amino-acid residues
has db xref: ChEBI

polyatomic cation
type: Class
subclass of: polyatomic ion
subclass of: cation
definition: A cation consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic cations
id: CHEBI:33702
in subset: 3 STAR

Axiom
annotated source: polyatomic cation
annotated property: has_related_synonym
annotated target: polyatomic cations
has db xref: ChEBI

amino-acid cation
type: Class
subclass of: organic cation
subclass of: polyatomic cation
subclass of: Restriction
  on property: is conjugate acid of
  some values from: amino acid
has exact synonym: amino-acid cation
has OBO namespace: chebi_ontology
has_related_synonym: amino acid cation
has_related_synonym: amino-acid cations
id: CHEBI:33703
in subset: 3 STAR

Axiom
annotated source: amino-acid cation
annotated property: hasExactSynonym
annotated target: amino-acid cation
has db xref: ChEBI

Axiom
annotated source: amino-acid cation
annotated property: has_related_synonym
annotated target: amino acid cation
has db xref: ChEBI

Axiom
annotated source: amino-acid cation
annotated property: has_related_synonym
annotated target: amino-acid cations
has db xref: ChEBI

alpha-amino acid
type: Class
subclass of: amino acid
subclass of: Restriction
  on property: is conjugate acid of
  some values from: alpha-amino-acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: alpha-amino-acid cation
subclass of: Restriction
  on property: is tautomer of
  some values from: alpha-amino acid zwitterion
definition: An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group.
charge: 0
formula: C2H4NO2R
mass: 74.05870
monoisotopicmass: 74.02420
smiles: NC([*])C(O)=O
has alternative id: CHEBI:10208
has alternative id: CHEBI:13779
has alternative id: CHEBI:22442
has alternative id: CHEBI:2642
has db xref: KEGG:C00045
has db xref: KEGG:C05167
has exact synonym: alpha-amino acid
has OBO namespace: chebi_ontology
has_related_synonym: Amino acid
has_related_synonym: Amino acids
has_related_synonym: alpha-amino acids
has_related_synonym: alpha-amino carboxylic acids
id: CHEBI:33704
in subset: 3 STAR

Axiom
annotated source: alpha-amino acid
annotated property: hasExactSynonym
annotated target: alpha-amino acid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: Amino acid
has db xref: KEGG_COMPOUND

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: Amino acids
has db xref: KEGG_COMPOUND

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: alpha-amino acids
has db xref: ChEBI

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: alpha-amino acids
has db xref: JCBN

Axiom
annotated source: alpha-amino acid
annotated property: has_related_synonym
annotated target: alpha-amino carboxylic acids
has db xref: IUPAC

amino-acid residue
type: Class
subclass of: organic group
subclass of: Restriction
  on property: is conjugate acid of
  some values from: anionic amino-acid residue
subclass of: Restriction
  on property: is conjugate base of
  some values from: cationic amino-acid residue
subclass of: Restriction
  on property: is substituent group from
  some values from: amino acid
definition: When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue.
has exact synonym: amino-acid residue
has OBO namespace: chebi_ontology
has_related_synonym: amino acid residue
has_related_synonym: amino-acid residues
id: CHEBI:33708
in subset: 3 STAR

Axiom
annotated source: amino-acid residue
annotated property: hasExactSynonym
annotated target: amino-acid residue
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: amino-acid residue
annotated property: has_related_synonym
annotated target: amino acid residue
has db xref: ChEBI

Axiom
annotated source: amino-acid residue
annotated property: has_related_synonym
annotated target: amino-acid residues
has db xref: JCBN

amino acid
type: Class
subclass of: carboxylic acid
subclass of: organic amino compound
subclass of: Restriction
  on property: is conjugate acid of
  some values from: amino-acid anion
subclass of: Restriction
  on property: is conjugate base of
  some values from: amino-acid cation
definition: A carboxylic acid containing one or more amino groups.
has alternative id: CHEBI:13815
has alternative id: CHEBI:22477
has db xref: Wikipedia:Amino_acid
has OBO namespace: chebi_ontology
has_related_synonym: Aminocarbonsaeure
has_related_synonym: Aminokarbonsaeure
has_related_synonym: Aminosaeure
has_related_synonym: amino acids
id: CHEBI:33709
in subset: 3 STAR

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: Aminocarbonsaeure
has db xref: ChEBI

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: Aminokarbonsaeure
has db xref: ChEBI

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: Aminosaeure
has db xref: ChEBI

Axiom
annotated source: amino acid
annotated property: has_related_synonym
annotated target: amino acids
has db xref: ChEBI

alpha-amino-acid residue
type: Class
subclass of: amino-acid residue
subclass of: Restriction
  on property: is substituent group from
  some values from: alpha-amino acid
definition: An amino-acid residue derived from an alpha-amino acid.
charge: 0
formula: C2H2NOR
mass: 56.043
monoisotopicmass: 56.01364
smiles: *-NC([*])C(-*)=O
has OBO namespace: chebi_ontology
has_related_synonym: alpha-amino-acid residues
has_related_synonym: an alpha-amino acid residue
id: CHEBI:33710
in subset: 3 STAR

Axiom
annotated source: alpha-amino-acid residue
annotated property: has_related_synonym
annotated target: alpha-amino-acid residues
has db xref: ChEBI

Axiom
annotated source: alpha-amino-acid residue
annotated property: has_related_synonym
annotated target: an alpha-amino acid residue
has db xref: UniProt

alpha-amino-acid cation
type: Class
subclass of: amino-acid cation
subclass of: Restriction
  on property: is conjugate acid of
  some values from: alpha-amino acid
has exact synonym: alpha-amino-acid cation
has OBO namespace: chebi_ontology
has_related_synonym: alpha-amino acid cations
has_related_synonym: alpha-amino-acid cations
id: CHEBI:33719
in subset: 3 STAR

Axiom
annotated source: alpha-amino-acid cation
annotated property: hasExactSynonym
annotated target: alpha-amino-acid cation
has db xref: ChEBI

Axiom
annotated source: alpha-amino-acid cation
annotated property: has_related_synonym
annotated target: alpha-amino acid cations
has db xref: ChEBI

Axiom
annotated source: alpha-amino-acid cation
annotated property: has_related_synonym
annotated target: alpha-amino-acid cations
has db xref: ChEBI

iron group molecular entity
type: Class
subclass of: d-block molecular entity
has exact synonym: iron group molecular entity
has_related_synonym: iron group molecular entities

copper group molecular entity
type: Class
subclass of: d-block molecular entity

nickel group molecular entity
type: Class
subclass of: d-block molecular entity

platinum molecular entity
type: Class
subclass of: nickel group molecular entity

macromolecule
type: Class
subclass of: polyatomic entity
definition: A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
has db xref: Wikipedia:Macromolecule
has exact synonym: macromolecule
has OBO namespace: chebi_ontology
has_related_synonym: macromolecules
has_related_synonym: polymer
has_related_synonym: polymer molecule
has_related_synonym: polymers
id: CHEBI:33839
in subset: 3 STAR

Axiom
annotated source: macromolecule
annotated property: hasExactSynonym
annotated target: macromolecule
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: macromolecules
has db xref: ChEBI

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: polymer
has db xref: ChEBI

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: polymer molecule
has db xref: IUPAC

Axiom
annotated source: macromolecule
annotated property: has_related_synonym
annotated target: polymers
has db xref: ChEBI

reagent
type: Class
subclass of: application
definition: A substance used in a chemical reaction to detect, measure, examine, or produce other substances.
has exact synonym: reagent
has OBO namespace: chebi_ontology
has_related_synonym: reactif
has_related_synonym: reactivo
has_related_synonym: reagents
id: CHEBI:33893
in subset: 3 STAR

Axiom
annotated source: reagent
annotated property: hasExactSynonym
annotated target: reagent
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: reagent
annotated property: has_related_synonym
annotated target: reactif
has db xref: IUPAC

Axiom
annotated source: reagent
annotated property: has_related_synonym
annotated target: reactivo
has db xref: IUPAC

Axiom
annotated source: reagent
annotated property: has_related_synonym
annotated target: reagents
has db xref: ChEBI

macronutrient
type: Class
subclass of: nutrient
definition: Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals.
has OBO namespace: chebi_ontology
has_related_synonym: macronutrients
id: CHEBI:33937
in subset: 3 STAR

Axiom
annotated source: macronutrient
annotated property: has_related_synonym
annotated target: macronutrients
has db xref: ChEBI

halide salt
type: Class
subclass of: salt
subclass of: halide

gold molecular entity
type: Class
subclass of: copper group molecular entity

nitrogen hydride
type: Class
subclass of: pnictogen hydride
subclass of: nitrogen molecular entity
has OBO namespace: chebi_ontology
has_related_synonym: nitrogen hydrides
id: CHEBI:35106
in subset: 3 STAR

Axiom
annotated source: nitrogen hydride
annotated property: has_related_synonym
annotated target: nitrogen hydrides
has db xref: ChEBI

azane
type: Class
subclass of: nitrogen hydride
definition: Saturated acyclic nitrogen hydrides having the general formula NnHn+2.
has OBO namespace: chebi_ontology
has_related_synonym: azanes
id: CHEBI:35107
in subset: 3 STAR

Axiom
annotated source: azane
annotated property: has_related_synonym
annotated target: azanes
has db xref: ChEBI

inhibitor
type: Class
subclass of: biological role
definition: A substance that diminishes the rate of a chemical reaction.
has exact synonym: inhibitor
has OBO namespace: chebi_ontology
has_related_synonym: inhibidor
has_related_synonym: inhibiteur
has_related_synonym: inhibitors
id: CHEBI:35222
in subset: 3 STAR

Axiom
annotated source: inhibitor
annotated property: hasExactSynonym
annotated target: inhibitor
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: inhibitor
annotated property: has_related_synonym
annotated target: inhibidor
has db xref: ChEBI

Axiom
annotated source: inhibitor
annotated property: has_related_synonym
annotated target: inhibiteur
has db xref: ChEBI

Axiom
annotated source: inhibitor
annotated property: has_related_synonym
annotated target: inhibitors
has db xref: ChEBI

fossil fuel
type: Class
subclass of: fuel

amino acid zwitterion
type: Class
subclass of: zwitterion
definition: The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group.
has exact synonym: amino acid zwitterion
has OBO namespace: chebi_ontology
id: CHEBI:35238
in subset: 3 STAR

Axiom
annotated source: amino acid zwitterion
annotated property: hasExactSynonym
annotated target: amino acid zwitterion
has db xref: ChEBI

organonitrogen compound
type: Class
subclass of: heteroorganic entity
subclass of: nitrogen molecular entity
definition: Any heteroorganic entity containing at least one carbon-nitrogen bond.
has exact synonym: organonitrogen compounds
has OBO namespace: chebi_ontology
has_related_synonym: organonitrogens
id: CHEBI:35352
in subset: 3 STAR

Axiom
annotated source: organonitrogen compound
annotated property: hasExactSynonym
annotated target: organonitrogen compounds
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organonitrogen compound
annotated property: has_related_synonym
annotated target: organonitrogens
has db xref: ChEBI

oxoanion
type: Class
subclass of: oxide
subclass of: polyatomic anion
definition: An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
has alternative id: CHEBI:33274
has alternative id: CHEBI:33436
has exact synonym: oxoanion
has OBO namespace: chebi_ontology
has_related_synonym: oxoacid anions
has_related_synonym: oxoanions
id: CHEBI:35406
in subset: 3 STAR

Axiom
annotated source: oxoanion
annotated property: hasExactSynonym
annotated target: oxoanion
has db xref: ChEBI

Axiom
annotated source: oxoanion
annotated property: has_related_synonym
annotated target: oxoacid anions
has db xref: ChEBI

Axiom
annotated source: oxoanion
annotated property: has_related_synonym
annotated target: oxoanions
has db xref: ChEBI

alkali metal salt
type: Class
subclass of: salt
subclass of: alkali metal molecular entity

carbon oxoacid
type: Class
subclass of: oxoacid
subclass of: organooxygen compound
has OBO namespace: chebi_ontology
has_related_synonym: carbon oxoacids
has_related_synonym: oxoacids of carbon
id: CHEBI:35605
in subset: 3 STAR

Axiom
annotated source: carbon oxoacid
annotated property: has_related_synonym
annotated target: carbon oxoacids
has db xref: ChEBI

Axiom
annotated source: carbon oxoacid
annotated property: has_related_synonym
annotated target: oxoacids of carbon
has db xref: ChEBI

pnictogen hydride
type: Class
subclass of: inorganic hydride
subclass of: pnictogen molecular entity
has exact synonym: pnictogen hydride
has OBO namespace: chebi_ontology
has_related_synonym: pnictogen hydrides
id: CHEBI:35881
in subset: 3 STAR

Axiom
annotated source: pnictogen hydride
annotated property: hasExactSynonym
annotated target: pnictogen hydride
has db xref: ChEBI

Axiom
annotated source: pnictogen hydride
annotated property: has_related_synonym
annotated target: pnictogen hydrides
has db xref: ChEBI

protein
type: Class
subclass of: information biomacromolecule
subclass of: Restriction
  on property: has part
  some values from: protein polypeptide chain
definition: A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome.
has alternative id: CHEBI:13677
has alternative id: CHEBI:14911
has exact synonym: proteins
has OBO namespace: chebi_ontology
id: CHEBI:36080
in subset: 3 STAR

Axiom
annotated source: protein
annotated property: hasExactSynonym
annotated target: proteins
has db xref: IUPAC
has synonym type: IUPAC NAME

inorganic chloride
type: Class
subclass of: chloride salt
subclass of: inorganic salt

lepton
type: Class
subclass of: fundamental particle
subclass of: fermion
definition: Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).
has OBO namespace: chebi_ontology
has_related_synonym: leptons
id: CHEBI:36338
in subset: 3 STAR

Axiom
annotated source: lepton
annotated property: has_related_synonym
annotated target: leptons
has db xref: ChEBI

baryon
type: Class
subclass of: fermion
subclass of: hadron
definition: Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).
has OBO namespace: chebi_ontology
has_related_synonym: baryons
id: CHEBI:36339
in subset: 3 STAR

Axiom
annotated source: baryon
annotated property: has_related_synonym
annotated target: baryons
has db xref: ChEBI

fermion
type: Class
subclass of: subatomic particle
definition: Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.
has exact synonym: fermion
has OBO namespace: chebi_ontology
has_related_synonym: fermions
id: CHEBI:36340
in subset: 3 STAR

Axiom
annotated source: fermion
annotated property: hasExactSynonym
annotated target: fermion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: fermion
annotated property: has_related_synonym
annotated target: fermions
has db xref: ChEBI

boson
type: Class
subclass of: subatomic particle
definition: Particle of integer spin quantum number following Bose-Einstein statistics. Bosons are named after Satyendra Nath Bose.
has exact synonym: boson
has OBO namespace: chebi_ontology
has_related_synonym: bosons
id: CHEBI:36341
in subset: 3 STAR

Axiom
annotated source: boson
annotated property: hasExactSynonym
annotated target: boson
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: boson
annotated property: has_related_synonym
annotated target: bosons
has db xref: ChEBI

subatomic particle
type: Class
subclass of: material entity
definition: A particle smaller than an atom.
has db xref: Wikipedia:Subatomic_particle
has OBO namespace: chebi_ontology
has_related_synonym: subatomic particles
id: CHEBI:36342
in subset: 3 STAR

Axiom
annotated source: subatomic particle
annotated property: has_related_synonym
annotated target: subatomic particles
has db xref: ChEBI

composite particle
type: Class
subclass of: subatomic particle
definition: A subatomic particle known to have substructure (i.e. consisting of smaller particles).
has OBO namespace: chebi_ontology
has_related_synonym: composite particles
id: CHEBI:36343
in subset: 3 STAR

Axiom
annotated source: composite particle
annotated property: has_related_synonym
annotated target: composite particles
has db xref: ChEBI

hadron
type: Class
subclass of: composite particle
definition: Hadron is a subatomic particle which experiences the strong force.
has OBO namespace: chebi_ontology
has_related_synonym: hadrons
id: CHEBI:36344
in subset: 3 STAR

Axiom
annotated source: hadron
annotated property: has_related_synonym
annotated target: hadrons
has db xref: ChEBI

meson
type: Class
subclass of: boson
subclass of: hadron
definition: A hadron with zero or integer spin; a strongly interacting boson. The term is derived from the Greek muepsilonsigmaomicronsigma (medium, middle).
has OBO namespace: chebi_ontology
has_related_synonym: mesons
id: CHEBI:36345
in subset: 3 STAR

Axiom
annotated source: meson
annotated property: has_related_synonym
annotated target: mesons
has db xref: ChEBI

nuclear particle
type: Class
subclass of: subatomic particle
definition: A nucleus or any of its constituents in any of their energy states.
has exact synonym: nuclear particle
has OBO namespace: chebi_ontology
id: CHEBI:36347
in subset: 3 STAR

Axiom
annotated source: nuclear particle
annotated property: hasExactSynonym
annotated target: nuclear particle
has db xref: IUPAC
has synonym type: IUPAC NAME

pi meson
type: Class
subclass of: meson
definition: The collective name for zero-spin mesons pi(+), pi(-) and pi(0).
has exact synonym: pi meson
has exact synonym: pion
has OBO namespace: chebi_ontology
has_related_synonym: pi-meson
id: CHEBI:36348
in subset: 3 STAR

Axiom
annotated source: pi meson
annotated property: hasExactSynonym
annotated target: pi meson
has db xref: ChEBI

Axiom
annotated source: pi meson
annotated property: hasExactSynonym
annotated target: pion
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: pi meson
annotated property: has_related_synonym
annotated target: pi-meson
has db xref: ChEBI

muon
type: Class
subclass of: lepton
definition: Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.113428913(17) u, or 105.658389(34) MeV.
charge: -1
mass: 0.113428913
has exact synonym: muon
has OBO namespace: chebi_ontology
has_related_synonym: Mueon
has_related_synonym: My-Teilchen
has_related_synonym: Myon
has_related_synonym: mu(-)
has_related_synonym: negative muon
id: CHEBI:36356
in subset: 3 STAR

Axiom
annotated source: muon
annotated property: hasExactSynonym
annotated target: muon
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: muon
annotated property: has_related_synonym
annotated target: Mueon
has db xref: ChEBI

Axiom
annotated source: muon
annotated property: has_related_synonym
annotated target: My-Teilchen
has db xref: ChEBI

Axiom
annotated source: muon
annotated property: has_related_synonym
annotated target: Myon
has db xref: ChEBI

Axiom
annotated source: muon
annotated property: has_related_synonym
annotated target: mu(-)
has db xref: IUPAC

Axiom
annotated source: muon
annotated property: has_related_synonym
annotated target: negative muon
has db xref: ChEBI

polyatomic entity
type: Class
subclass of: molecular entity
subclass of: Restriction
  on property: has part
  some values from: group
definition: Any molecular entity consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic entities
id: CHEBI:36357
in subset: 3 STAR

Axiom
annotated source: polyatomic entity
annotated property: has_related_synonym
annotated target: polyatomic entities
has db xref: ChEBI

polyatomic ion
type: Class
subclass of: ion
subclass of: polyatomic entity
definition: An ion consisting of more than one atom.
has OBO namespace: chebi_ontology
has_related_synonym: polyatomic ions
id: CHEBI:36358
in subset: 3 STAR

Axiom
annotated source: polyatomic ion
annotated property: has_related_synonym
annotated target: polyatomic ions
has db xref: ChEBI

carbonyl compound
type: Class
subclass of: organic oxo compound
subclass of: organooxygen compound
subclass of: Restriction
  on property: has part
  some values from: carbonyl group
definition: Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.
has exact synonym: carbonyl compounds
has OBO namespace: chebi_ontology
id: CHEBI:36586
in subset: 3 STAR

Axiom
annotated source: carbonyl compound
annotated property: hasExactSynonym
annotated target: carbonyl compounds
has db xref: IUPAC
has synonym type: IUPAC NAME

organic oxo compound
type: Class
subclass of: organic molecule
subclass of: Restriction
  on property: has part
  some values from: oxo group
definition: Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.
has exact synonym: oxo compounds
has OBO namespace: chebi_ontology
has_related_synonym: organic oxo compounds
id: CHEBI:36587
in subset: 3 STAR

Axiom
annotated source: organic oxo compound
annotated property: hasExactSynonym
annotated target: oxo compounds
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: organic oxo compound
annotated property: has_related_synonym
annotated target: organic oxo compounds
has db xref: ChEBI

chalcogen hydride
type: Class
subclass of: inorganic hydride
subclass of: chalcogen molecular entity

argon molecular entity
type: Class
subclass of: noble gas molecular entity

inorganic ion
type: Class
subclass of: inorganic molecular entity
subclass of: ion
has OBO namespace: chebi_ontology
has_related_synonym: inorganic ions
id: CHEBI:36914
in subset: 3 STAR

Axiom
annotated source: inorganic ion
annotated property: has_related_synonym
annotated target: inorganic ions
has db xref: ChEBI

inorganic cation
type: Class
subclass of: inorganic ion
subclass of: cation
has OBO namespace: chebi_ontology
has_related_synonym: inorganic cations
id: CHEBI:36915
in subset: 3 STAR

Axiom
annotated source: inorganic cation
annotated property: has_related_synonym
annotated target: inorganic cations
has db xref: ChEBI

cation
type: Class
subclass of: ion
definition: A monoatomic or polyatomic species having one or more elementary charges of the proton.
has alternative id: CHEBI:23058
has alternative id: CHEBI:3473
has db xref: KEGG:C01373
has exact synonym: Cation
has exact synonym: cation
has OBO namespace: chebi_ontology
has_related_synonym: Kation
has_related_synonym: Kationen
has_related_synonym: cationes
has_related_synonym: cations
id: CHEBI:36916
in subset: 3 STAR

Axiom
annotated source: cation
annotated property: hasExactSynonym
annotated target: Cation
has db xref: KEGG_COMPOUND

Axiom
annotated source: cation
annotated property: hasExactSynonym
annotated target: cation
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: hasExactSynonym
annotated target: cation
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: Kation
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: Kationen
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: cationes
has db xref: ChEBI

Axiom
annotated source: cation
annotated property: has_related_synonym
annotated target: cations
has db xref: ChEBI

organochalcogen compound
type: Class
subclass of: heteroorganic entity
subclass of: chalcogen molecular entity
definition: An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
has exact synonym: organochalcogen compound
has OBO namespace: chebi_ontology
has_related_synonym: organochalcogen compounds
id: CHEBI:36962
in subset: 3 STAR

Axiom
annotated source: organochalcogen compound
annotated property: hasExactSynonym
annotated target: organochalcogen compound
has db xref: ChEBI

Axiom
annotated source: organochalcogen compound
annotated property: has_related_synonym
annotated target: organochalcogen compounds
has db xref: ChEBI

organooxygen compound
type: Class
subclass of: oxygen molecular entity
subclass of: organochalcogen compound
definition: An organochalcogen compound containing at least one carbon-oxygen bond.
has db xref: PMID:17586126
has exact synonym: organooxygen compound
has OBO namespace: chebi_ontology
has_related_synonym: organooxygen compounds
id: CHEBI:36963
in subset: 3 STAR

Axiom
annotated source: organooxygen compound
annotated property: hasDbXref
annotated target: PMID:17586126
source: Europe PMC

Axiom
annotated source: organooxygen compound
annotated property: hasExactSynonym
annotated target: organooxygen compound
has db xref: ChEBI

Axiom
annotated source: organooxygen compound
annotated property: has_related_synonym
annotated target: organooxygen compounds
has db xref: ChEBI

amino-acid anion
type: Class
subclass of: carboxylic acid anion
subclass of: organonitrogen compound
subclass of: Restriction
  on property: is conjugate base of
  some values from: amino acid
has exact synonym: amino-acid anion
has OBO namespace: chebi_ontology
has_related_synonym: amino acid anions
has_related_synonym: amino-acid anions
id: CHEBI:37022
in subset: 3 STAR

Axiom
annotated source: amino-acid anion
annotated property: hasExactSynonym
annotated target: amino-acid anion
has db xref: ChEBI

Axiom
annotated source: amino-acid anion
annotated property: has_related_synonym
annotated target: amino acid anions
has db xref: ChEBI

Axiom
annotated source: amino-acid anion
annotated property: has_related_synonym
annotated target: amino-acid anions
has db xref: ChEBI

mononuclear parent hydride
type: Class
subclass of: hydrides
has exact synonym: mononuclear parent hydrides
has OBO namespace: chebi_ontology
has_related_synonym: mononuclear hydride
has_related_synonym: mononuclear hydrides
id: CHEBI:37176
in subset: 3 STAR

Axiom
annotated source: mononuclear parent hydride
annotated property: hasExactSynonym
annotated target: mononuclear parent hydrides
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: mononuclear parent hydride
annotated property: has_related_synonym
annotated target: mononuclear hydride
has db xref: ChEBI

Axiom
annotated source: mononuclear parent hydride
annotated property: has_related_synonym
annotated target: mononuclear hydrides
has db xref: IUPAC

acid
type: Class
subclass of: chemical role
definition: An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).
has alternative id: CHEBI:13800
has alternative id: CHEBI:13801
has alternative id: CHEBI:22209
has alternative id: CHEBI:2426
has db xref: KEGG:C00174
has exact synonym: Acid
has exact synonym: acid
has OBO namespace: chebi_ontology
has_related_synonym: Saeure
has_related_synonym: Saeuren
has_related_synonym: acide
has_related_synonym: acido
has_related_synonym: acids
id: CHEBI:37527
in subset: 3 STAR

Axiom
annotated source: acid
annotated property: hasExactSynonym
annotated target: Acid
has db xref: KEGG_COMPOUND

Axiom
annotated source: acid
annotated property: hasExactSynonym
annotated target: acid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: Saeure
has db xref: ChEBI

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: Saeuren
has db xref: ChEBI

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: acide
has db xref: IUPAC

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: acido
has db xref: ChEBI

Axiom
annotated source: acid
annotated property: has_related_synonym
annotated target: acids
has db xref: ChEBI

heteroatomic molecular entity
type: Class
subclass of: polyatomic entity
definition: A molecular entity consisting of two or more chemical elements.
has OBO namespace: chebi_ontology
has_related_synonym: chemical compound
has_related_synonym: heteroatomic molecular entities
id: CHEBI:37577
in subset: 3 STAR

Axiom
annotated source: heteroatomic molecular entity
annotated property: has_related_synonym
annotated target: chemical compound
has db xref: ChEBI

Axiom
annotated source: heteroatomic molecular entity
annotated property: has_related_synonym
annotated target: heteroatomic molecular entities
has db xref: ChEBI

halide
type: Class
subclass of: halogen molecular entity
subclass of: heteroatomic molecular entity

carboxamide
type: Class
subclass of: primary amide
subclass of: organonitrogen compound
subclass of: organooxygen compound
subclass of: Restriction
  on property: has part
  some values from: carbamoyl group
definition: An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.
charge: 0
formula: CNOR3
mass: 42.01680
monoisotopicmass: 41.99799
smiles: [*]C(=O)N([*])[*]
has alternative id: CHEBI:35354
has alternative id: CHEBI:35355
has exact synonym: carboxamides
has OBO namespace: chebi_ontology
has_related_synonym: carboxamides
has_related_synonym: primary carboxamide
id: CHEBI:37622
in subset: 3 STAR

Axiom
annotated source: carboxamide
annotated property: hasExactSynonym
annotated target: carboxamides
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxamide
annotated property: has_related_synonym
annotated target: carboxamides
has db xref: ChEBI

Axiom
annotated source: carboxamide
annotated property: has_related_synonym
annotated target: primary carboxamide
has db xref: ChEBI

carboacyl group
type: Class
subclass of: acyl group
subclass of: Restriction
  on property: is substituent group from
  some values from: carboxylic acid
definition: A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid.
has exact synonym: carboacyl groups
has exact synonym: carboxylic acyl group
has OBO namespace: chebi_ontology
has_related_synonym: carboxylic acyl groups
id: CHEBI:37838
in subset: 3 STAR

Axiom
annotated source: carboacyl group
annotated property: hasExactSynonym
annotated target: carboacyl groups
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboacyl group
annotated property: hasExactSynonym
annotated target: carboxylic acyl group
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboacyl group
annotated property: has_related_synonym
annotated target: carboxylic acyl groups
has db xref: IUPAC

inorganic sodium salt
type: Class
subclass of: inorganic salt
subclass of: sodium salt

Bronsted acid
type: Class
subclass of: donor
subclass of: acid
definition: A molecular entity capable of donating a hydron to an acceptor (Bronsted base).
has exact synonym: Bronsted acid
has OBO namespace: chebi_ontology
has_related_synonym: Bronsted-Saeure
has_related_synonym: acide de Bronsted
has_related_synonym: donneur d'hydron
has_related_synonym: hydron donor
id: CHEBI:39141
in subset: 3 STAR

Axiom
annotated source: Bronsted acid
annotated property: hasExactSynonym
annotated target: Bronsted acid
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: Bronsted-Saeure
has db xref: ChEBI

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: acide de Bronsted
has db xref: IUPAC

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: donneur d'hydron
has db xref: IUPAC

Axiom
annotated source: Bronsted acid
annotated property: has_related_synonym
annotated target: hydron donor
has db xref: IUPAC

Bronsted base
type: Class
subclass of: acceptor
subclass of: base
definition: A molecular entity capable of accepting a hydron from a donor (Bronsted acid).
has exact synonym: Bronsted base
has OBO namespace: chebi_ontology
has_related_synonym: Bronsted-Base
has_related_synonym: accepteur d'hydron
has_related_synonym: base de Bronsted
has_related_synonym: hydron acceptor
id: CHEBI:39142
in subset: 3 STAR

Axiom
annotated source: Bronsted base
annotated property: hasExactSynonym
annotated target: Bronsted base
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: Bronsted-Base
has db xref: ChEBI

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: accepteur d'hydron
has db xref: IUPAC

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: base de Bronsted
has db xref: IUPAC

Axiom
annotated source: Bronsted base
annotated property: has_related_synonym
annotated target: hydron acceptor
has db xref: IUPAC

Lewis base
type: Class
subclass of: donor
subclass of: base
definition: A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct.
has exact synonym: Lewis base
has OBO namespace: chebi_ontology
has_related_synonym: Lewis-Base
has_related_synonym: base de Lewis
has_related_synonym: donneur d'une paire d'electrons
has_related_synonym: electron donor
id: CHEBI:39144
in subset: 3 STAR

Axiom
annotated source: Lewis base
annotated property: hasExactSynonym
annotated target: Lewis base
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: Lewis-Base
has db xref: ChEBI

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: base de Lewis
has db xref: IUPAC

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: donneur d'une paire d'electrons
has db xref: ChEBI

Axiom
annotated source: Lewis base
annotated property: has_related_synonym
annotated target: electron donor
has db xref: ChEBI

hydroxy group
type: Class
subclass of: inorganic group
charge: 0
formula: HO
mass: 17.00734
monoisotopicmass: 17.00274
smiles: *O[H]
has alternative id: CHEBI:24706
has alternative id: CHEBI:43171
has db xref: PDBeChem:OH
has exact synonym: HYDROXY GROUP
has exact synonym: hydroxy
has exact synonym: hydroxy group
has OBO namespace: chebi_ontology
has_related_synonym: -OH
has_related_synonym: hydroxyl
has_related_synonym: hydroxyl group
id: CHEBI:43176
in subset: 3 STAR

Axiom
annotated source: hydroxy group
annotated property: hasExactSynonym
annotated target: HYDROXY GROUP
has db xref: PDBeChem

Axiom
annotated source: hydroxy group
annotated property: hasExactSynonym
annotated target: hydroxy
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydroxy group
annotated property: hasExactSynonym
annotated target: hydroxy group
has db xref: UniProt

Axiom
annotated source: hydroxy group
annotated property: has_related_synonym
annotated target: -OH
has db xref: IUPAC

Axiom
annotated source: hydroxy group
annotated property: has_related_synonym
annotated target: hydroxyl
has db xref: ChEBI

Axiom
annotated source: hydroxy group
annotated property: has_related_synonym
annotated target: hydroxyl group
has db xref: ChEBI

oxo group
type: Class
subclass of: inorganic group
charge: 0
formula: O
mass: 15.99940
monoisotopicmass: 15.99491
smiles: O=*
has alternative id: CHEBI:29353
has alternative id: CHEBI:44607
has db xref: PDBeChem:O
has exact synonym: OXO GROUP
has exact synonym: oxo
has OBO namespace: chebi_ontology
has_related_synonym: =O
id: CHEBI:46629
in subset: 3 STAR

Axiom
annotated source: oxo group
annotated property: hasExactSynonym
annotated target: OXO GROUP
has db xref: PDBeChem

Axiom
annotated source: oxo group
annotated property: hasExactSynonym
annotated target: oxo
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: oxo group
annotated property: has_related_synonym
annotated target: =O
has db xref: IUPAC

mineral
type: Class
subclass of: chemical substance
definition: In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals').
has exact synonym: mineral
has_related_synonym: Minerale
has_related_synonym: minerales
has_related_synonym: minerals
has_related_synonym: mineraux

carboxy group
type: Class
subclass of: organyl group
charge: 0
formula: CHO2
mass: 45.01744
monoisotopicmass: 44.99765
smiles: *C(=O)O
has alternative id: CHEBI:23025
has alternative id: CHEBI:41420
has db xref: PDBeChem:FMT
has exact synonym: CARBOXY GROUP
has exact synonym: carboxy
has OBO namespace: chebi_ontology
has_related_synonym: -C(O)OH
has_related_synonym: -CO2H
has_related_synonym: -COOH
has_related_synonym: carboxyl group
id: CHEBI:46883
in subset: 3 STAR

Axiom
annotated source: carboxy group
annotated property: hasExactSynonym
annotated target: CARBOXY GROUP
has db xref: PDBeChem

Axiom
annotated source: carboxy group
annotated property: hasExactSynonym
annotated target: carboxy
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: -C(O)OH
has db xref: IUPAC

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: -CO2H
has db xref: ChEBI

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: -COOH
has db xref: IUPAC

Axiom
annotated source: carboxy group
annotated property: has_related_synonym
annotated target: carboxyl group
has db xref: ChEBI

hydrogen atom
type: Class
subclass of: inorganic molecular entity
subclass of: nonmetal atom
subclass of: s-block element atom
subclass of: Restriction
  on property: has role
  some values from: macronutrient
charge: 0
formula: H
inchi: InChI=1S/H
inchikey: YZCKVEUIGOORGS-UHFFFAOYSA-N
mass: 1.00794
monoisotopicmass: 1.00783
smiles: [H]
has alternative id: CHEBI:24634
has alternative id: CHEBI:49636
has db xref: WebElements:H
has exact synonym: hydrogen
has OBO namespace: chebi_ontology
has_related_synonym: 1H
has_related_synonym: H
has_related_synonym: Wasserstoff
has_related_synonym: hidrogeno
has_related_synonym: hydrogen
has_related_synonym: hydrogene
id: CHEBI:49637
in subset: 3 STAR

Axiom
annotated source: hydrogen atom
annotated property: hasExactSynonym
annotated target: hydrogen
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: 1H
has db xref: IUPAC

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: H
has db xref: IUPAC

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: Wasserstoff
has db xref: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: hidrogeno
has db xref: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: hydrogen
has db xref: ChEBI

Axiom
annotated source: hydrogen atom
annotated property: has_related_synonym
annotated target: hydrogene
has db xref: ChEBI

organic amino compound
type: Class
subclass of: organonitrogen compound
subclass of: Restriction
  on property: has role
  some values from: Bronsted base
subclass of: Restriction
  on property: has parent hydride
  some values from: ammonia
definition: A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.
has OBO namespace: chebi_ontology
has_related_synonym: organic amino compounds
id: CHEBI:50047
in subset: 3 STAR

Axiom
annotated source: organic amino compound
annotated property: has_related_synonym
annotated target: organic amino compounds
has db xref: ChEBI

onium compound
type: Class
subclass of: heteroatomic molecular entity
has OBO namespace: chebi_ontology
id: CHEBI:50312
in subset: 1 STAR

onium cation
type: Class
subclass of: onium compound
definition: Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families.
has exact synonym: onium cations
has OBO namespace: chebi_ontology
has_related_synonym: onium cations
has_related_synonym: onium ion
has_related_synonym: onium ions
id: CHEBI:50313
in subset: 3 STAR

Axiom
annotated source: onium cation
annotated property: hasExactSynonym
annotated target: onium cations
has db xref: IUPAC
has synonym type: IUPAC NAME

Axiom
annotated source: onium cation
annotated property: has_related_synonym
annotated target: onium cations
has db xref: ChEBI

Axiom
annotated source: onium cation
annotated property: has_related_synonym
annotated target: onium ion
has db xref: ChEBI

Axiom
annotated source: onium cation
annotated property: has_related_synonym
annotated target: onium ions
has db xref: ChEBI

organic molecular entity
type: Class
subclass of: carbon group molecular entity
subclass of: Restriction
  on property: has part
  some values from: carbon atom
definition: Any molecular entity that contains carbon.
has alternative id: CHEBI:25700
has alternative id: CHEBI:33244
has OBO namespace: chebi_ontology
has_related_synonym: organic compounds
has_related_synonym: organic entity
has_related_synonym: organic molecular entities
id: CHEBI:50860
in subset: 3 STAR

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic compounds
has db xref: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic entity
has db xref: ChEBI

Axiom
annotated source: organic molecular entity
annotated property: has_related_synonym
annotated target: organic molecular entities
has db xref: ChEBI

role
type: Class
subclass of: role
definition: A role is particular behaviour which a material entity may exhibit.
has OBO namespace: chebi_ontology
id: CHEBI:50906
in subset: 3 STAR

neurotoxin
type: Class
subclass of: aetiopathogenetic role
subclass of: poison
definition: A poison that interferes with the functions of the nervous system.
has alternative id: CHEBI:50911
has db xref: Wikipedia:Neurotoxin
has OBO namespace: chebi_ontology
has_related_synonym: agente neurotoxico
has_related_synonym: nerve poison
has_related_synonym: nerve poisons
has_related_synonym: neurotoxic agent
has_related_synonym: neurotoxic agents
has_related_synonym: neurotoxicant
has_related_synonym: neurotoxins
id: CHEBI:50910
in subset: 3 STAR

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: agente neurotoxico
has db xref: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: nerve poison
has db xref: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: nerve poisons
has db xref: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxic agent
has db xref: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxic agents
has db xref: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxicant
has db xref: ChEBI

Axiom
annotated source: neurotoxin
annotated property: has_related_synonym
annotated target: neurotoxins
has db xref: ChEBI

chemical role
type: Class
subclass of: role
definition: A role played by the molecular entity or part thereof within a chemical context.
has OBO namespace: chebi_ontology
id: CHEBI:51086
in subset: 3 STAR

nitrogen molecular entity
type: Class
subclass of: pnictogen molecular entity
subclass of: Restriction
  on property: has part
  some values from: nitrogen atom
has alternative id: CHEBI:25556
has alternative id: CHEBI:7594
has db xref: KEGG:C06061
has OBO namespace: chebi_ontology
has_related_synonym: Nitrogenous compounds
has_related_synonym: nitrogen compounds
has_related_synonym: nitrogen molecular entities
id: CHEBI:51143
in subset: 3 STAR

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: Nitrogenous compounds
has db xref: KEGG_COMPOUND

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: nitrogen compounds
has db xref: ChEBI

Axiom
annotated source: nitrogen molecular entity
annotated property: has_related_synonym
annotated target: nitrogen molecular entities
has db xref: ChEBI

dipolar compound
type: Class
subclass of: organic molecule
definition: An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case.
has OBO namespace: chebi_ontology
has_related_synonym: dipolar compounds
id: CHEBI:51151
in subset: 3 STAR

Axiom
annotated source: dipolar compound
annotated property: has_related_synonym
annotated target: dipolar compounds
has db xref: ChEBI

organodiyl group
type: Class
subclass of: organic divalent group
definition: Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s).
has OBO namespace: chebi_ontology
has_related_synonym: organodiyl groups
id: CHEBI:51422
in subset: 3 STAR

Axiom
annotated source: organodiyl group
annotated property: has_related_synonym
annotated target: organodiyl groups
has db xref: ChEBI

organic divalent group
type: Class
subclass of: organic group
has OBO namespace: chebi_ontology
id: CHEBI:51446
in subset: 1 STAR

organic univalent group
type: Class
subclass of: organic group
has OBO namespace: chebi_ontology
id: CHEBI:51447
in subset: 1 STAR

biochemical role
type: Class
subclass of: biological role
definition: A biological role played by the molecular entity or part thereof within a biochemical context.
has OBO namespace: chebi_ontology
id: CHEBI:52206
in subset: 3 STAR

aetiopathogenetic role
type: Class
subclass of: biological role
definition: A role played by the molecular entity or part thereof which causes the development of a pathological process.
has OBO namespace: chebi_ontology
has_related_synonym: etiopathogenetic agent
has_related_synonym: etiopathogenetic role
id: CHEBI:52209
in subset: 3 STAR

Axiom
annotated source: aetiopathogenetic role
annotated property: has_related_synonym
annotated target: etiopathogenetic agent
has db xref: ChEBI

Axiom
annotated source: aetiopathogenetic role
annotated property: has_related_synonym
annotated target: etiopathogenetic role
has db xref: ChEBI

physiological role
type: Class
subclass of: biological role
has OBO namespace: chebi_ontology
id: CHEBI:52211
in subset: 1 STAR

inorganic hydroxy compound
type: Class
subclass of: hydroxides
subclass of: inorganic molecular entity

cationic amino-acid residue
type: Class
subclass of: organic cationic group
subclass of: Restriction
  on property: is conjugate acid of
  some values from: amino-acid residue
definition: An amino-acid residue protonated on nitrogen.
has OBO namespace: chebi_ontology
has_related_synonym: amino acid cation residue
has_related_synonym: amino acid cation residues
has_related_synonym: amino-acid cation residue
has_related_synonym: amino-acid cation residues
has_related_synonym: cationic amino acid residue
has_related_synonym: cationic amino acid residues
has_related_synonym: cationic amino-acid residues
id: CHEBI:58942
in subset: 3 STAR

Axiom
annotated source: cationic amino-acid residue
annotated property: has_related_synonym
annotated target: amino acid cation residue
has db xref: ChEBI

Axiom
annotated source: cationic amino-acid residue
annotated property: has_related_synonym
annotated target: amino acid cation residues
has db xref: ChEBI

Axiom
annotated source: cationic amino-acid residue
annotated property: has_related_synonym
annotated target: amino-acid cation residue
has db xref: ChEBI

Axiom
annotated source: cationic amino-acid residue
annotated property: has_related_synonym
annotated target: amino-acid cation residues
has db xref: ChEBI

Axiom
annotated source: cationic amino-acid residue
annotated property: has_related_synonym
annotated target: cationic amino acid residue
has db xref: ChEBI

Axiom
annotated source: cationic amino-acid residue
annotated property: has_related_synonym
annotated target: cationic amino acid residues
has db xref: ChEBI

Axiom
annotated source: cationic amino-acid residue
annotated property: has_related_synonym
annotated target: cationic amino-acid residues
has db xref: ChEBI

nucleophilic reagent
type: Class
subclass of: reagent
subclass of: Lewis base
definition: A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons.
has OBO namespace: chebi_ontology
has_related_synonym: nucleophile
has_related_synonym: nucleophiles
has_related_synonym: nucleophilic reagents
id: CHEBI:59740
in subset: 3 STAR

Axiom
annotated source: nucleophilic reagent
annotated property: has_related_synonym
annotated target: nucleophile
has db xref: ChEBI

Axiom
annotated source: nucleophilic reagent
annotated property: has_related_synonym
annotated target: nucleophiles
has db xref: ChEBI

Axiom
annotated source: nucleophilic reagent
annotated property: has_related_synonym
annotated target: nucleophilic reagents
has db xref: ChEBI

chemical substance
type: Class
subclass of: chemical entity
definition: A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
has_related_synonym: Chemische Substanz

monovalent inorganic cation
type: Class
subclass of: inorganic cation
definition: An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one.
has OBO namespace: chebi_ontology
has_related_synonym: a monovalent cation
id: CHEBI:60242
in subset: 3 STAR

Axiom
annotated source: monovalent inorganic cation
annotated property: has_related_synonym
annotated target: a monovalent cation
has db xref: UniProt

peptide zwitterion
type: Class
subclass of: zwitterion
subclass of: Restriction
  on property: is tautomer of
  some values from: peptide
definition: Zwitterionic form of any peptide where, in general, the amino terminus is positively charged and the carboxy terminus is negatively charged.
charge: 0
formula: C2H4NO2R(C2H2NOR)n
has OBO namespace: chebi_ontology
has_related_synonym: a peptide
has_related_synonym: peptide zwitterions
id: CHEBI:60466
in subset: 3 STAR

Axiom
annotated source: peptide zwitterion
annotated property: has_related_synonym
annotated target: a peptide
has db xref: UniProt

Axiom
annotated source: peptide zwitterion
annotated property: has_related_synonym
annotated target: peptide zwitterions
has db xref: ChEBI

one-carbon compound
type: Class
subclass of: organic molecular entity
definition: An organic molecular entity containing a single carbon atom (C1).
has OBO namespace: chebi_ontology
has_related_synonym: one-carbon compounds
id: CHEBI:64708
in subset: 3 STAR

Axiom
annotated source: one-carbon compound
annotated property: has_related_synonym
annotated target: one-carbon compounds
has db xref: ChEBI

organic acid
type: Class
subclass of: organic molecular entity
definition: Any organic molecular entity that is acidic and contains carbon in covalent linkage.
has OBO namespace: chebi_ontology
has_related_synonym: organic acids
id: CHEBI:64709
in subset: 3 STAR

Axiom
annotated source: organic acid
annotated property: has_related_synonym
annotated target: organic acids
has db xref: ChEBI

cationic group
type: Class
subclass of: group
definition: A group that carries an overall positive charge.
has OBO namespace: chebi_ontology
has_related_synonym: cationic groups
id: CHEBI:64766
in subset: 3 STAR

Axiom
annotated source: cationic group
annotated property: has_related_synonym
annotated target: cationic groups
has db xref: ChEBI

anionic group
type: Class
subclass of: group
definition: A group that carries an overall negative charge.
has OBO namespace: chebi_ontology
has_related_synonym: anionic groups
id: CHEBI:64767
in subset: 3 STAR

Axiom
annotated source: anionic group
annotated property: has_related_synonym
annotated target: anionic groups
has db xref: ChEBI

organic cationic group
type: Class
subclass of: cationic group
subclass of: Restriction
  on property: is conjugate acid of
  some values from: organic group
definition: A cationic group that contains carbon.
has OBO namespace: chebi_ontology
has_related_synonym: organic cationic groups
id: CHEBI:64769
in subset: 3 STAR

Axiom
annotated source: organic cationic group
annotated property: has_related_synonym
annotated target: organic cationic groups
has db xref: ChEBI

organic anionic group
type: Class
subclass of: anionic group
subclass of: Restriction
  on property: is conjugate base of
  some values from: organic group
definition: An anionic group that contains carbon.
has OBO namespace: chebi_ontology
has_related_synonym: organic anionic groups
id: CHEBI:64775
in subset: 3 STAR

Axiom
annotated source: organic anionic group
annotated property: has_related_synonym
annotated target: organic anionic groups
has db xref: ChEBI

anionic amino-acid residue
type: Class
subclass of: organic anionic group
subclass of: Restriction
  on property: is conjugate base of
  some values from: amino-acid residue
definition: An amino-acid residue carrying an overall negative charge.
has OBO namespace: chebi_ontology
has_related_synonym: amino acid anion residue
has_related_synonym: amino acid anion residues
has_related_synonym: amino-acid anion residue
has_related_synonym: amino-acid anion residues
has_related_synonym: anionic amino acid residue
has_related_synonym: anionic amino acid residues
has_related_synonym: anionic amino-acid residues
id: CHEBI:64898
in subset: 3 STAR

Axiom
annotated source: anionic amino-acid residue
annotated property: has_related_synonym
annotated target: amino acid anion residue
has db xref: ChEBI

Axiom
annotated source: anionic amino-acid residue
annotated property: has_related_synonym
annotated target: amino acid anion residues
has db xref: ChEBI

Axiom
annotated source: anionic amino-acid residue
annotated property: has_related_synonym
annotated target: amino-acid anion residue
has db xref: ChEBI

Axiom
annotated source: anionic amino-acid residue
annotated property: has_related_synonym
annotated target: amino-acid anion residues
has db xref: ChEBI

Axiom
annotated source: anionic amino-acid residue
annotated property: has_related_synonym
annotated target: anionic amino acid residue
has db xref: ChEBI

Axiom
annotated source: anionic amino-acid residue
annotated property: has_related_synonym
annotated target: anionic amino acid residues
has db xref: ChEBI

Axiom
annotated source: anionic amino-acid residue
annotated property: has_related_synonym
annotated target: anionic amino-acid residues
has db xref: ChEBI

poison
type: Class
subclass of: biological role
definition: Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism.
has db xref: Wikipedia:Poison
has OBO namespace: chebi_ontology
has_related_synonym: poisonous agent
has_related_synonym: poisonous agents
has_related_synonym: poisonous substance
has_related_synonym: poisonous substances
has_related_synonym: poisons
has_related_synonym: toxic agent
has_related_synonym: toxic agents
has_related_synonym: toxic substance
has_related_synonym: toxic substances
id: CHEBI:64909
in subset: 3 STAR

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous agent
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous agents
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous substance
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisonous substances
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: poisons
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic agent
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic agents
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic substance
has db xref: ChEBI

Axiom
annotated source: poison
annotated property: has_related_synonym
annotated target: toxic substances
has db xref: ChEBI

organic molecule
type: Class
subclass of: molecule
subclass of: organic molecular entity
definition: Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
has OBO namespace: chebi_ontology
has_related_synonym: organic compound
has_related_synonym: organic compounds
has_related_synonym: organic molecules
id: CHEBI:72695
in subset: 3 STAR

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic compound
has db xref: ChEBI

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic compounds
has db xref: ChEBI

Axiom
annotated source: organic molecule
annotated property: has_related_synonym
annotated target: organic molecules
has db xref: ChEBI

eukaryotic metabolite
type: Class
subclass of: metabolite
definition: Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms.
has OBO namespace: chebi_ontology
has_related_synonym: eukaryotic metabolites
id: CHEBI:75763
in subset: 3 STAR

Axiom
annotated source: eukaryotic metabolite
annotated property: has_related_synonym
annotated target: eukaryotic metabolites
has db xref: ChEBI

animal metabolite
type: Class
subclass of: eukaryotic metabolite
definition: Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals.
has alternative id: CHEBI:77721
has alternative id: CHEBI:77743
has OBO namespace: chebi_ontology
has_related_synonym: animal metabolites
id: CHEBI:75767
in subset: 3 STAR

Axiom
annotated source: animal metabolite
annotated property: has_related_synonym
annotated target: animal metabolites
has db xref: ChEBI

mammalian metabolite
type: Class
subclass of: animal metabolite
definition: Any animal metabolite produced during a metabolic reaction in mammals.
has alternative id: CHEBI:77464
has alternative id: CHEBI:77744
has OBO namespace: chebi_ontology
has_related_synonym: mammalian metabolites
id: CHEBI:75768
in subset: 3 STAR

Axiom
annotated source: mammalian metabolite
annotated property: has_related_synonym
annotated target: mammalian metabolites
has db xref: ChEBI

mouse metabolite
type: Class
subclass of: mammalian metabolite
definition: Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
has OBO namespace: chebi_ontology
has_related_synonym: Mus musculus metabolite
has_related_synonym: Mus musculus metabolites
has_related_synonym: mouse metabolites
id: CHEBI:75771
in subset: 3 STAR

Axiom
annotated source: mouse metabolite
annotated property: has_related_synonym
annotated target: Mus musculus metabolite
has db xref: ChEBI

Axiom
annotated source: mouse metabolite
annotated property: has_related_synonym
annotated target: Mus musculus metabolites
has db xref: ChEBI

Axiom
annotated source: mouse metabolite
annotated property: has_related_synonym
annotated target: mouse metabolites
has db xref: ChEBI

Saccharomyces cerevisiae metabolite
type: Class
subclass of: fungal metabolite
definition: Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae).
has alternative id: CHEBI:76949
has alternative id: CHEBI:76951
has OBO namespace: chebi_ontology
has_related_synonym: S. cerevisiae metabolite
has_related_synonym: S. cerevisiae metabolites
has_related_synonym: S. cerevisiae secondary metabolite
has_related_synonym: S. cerevisiae secondary metabolites
has_related_synonym: Saccharomyces cerevisiae metabolites
has_related_synonym: Saccharomyces cerevisiae secondary metabolites
has_related_synonym: baker's yeast metabolite
has_related_synonym: baker's yeast metabolites
has_related_synonym: baker's yeast secondary metabolite
has_related_synonym: baker's yeast secondary metabolites
id: CHEBI:75772
in subset: 3 STAR

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae secondary metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: S. cerevisiae secondary metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: Saccharomyces cerevisiae metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: Saccharomyces cerevisiae secondary metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast metabolites
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast secondary metabolite
has db xref: ChEBI

Axiom
annotated source: Saccharomyces cerevisiae metabolite
annotated property: has_related_synonym
annotated target: baker's yeast secondary metabolites
has db xref: ChEBI

prokaryotic metabolite
type: Class
subclass of: metabolite
definition: Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea.
has OBO namespace: chebi_ontology
has_related_synonym: prokaryotic metabolites
id: CHEBI:75787
in subset: 3 STAR

Axiom
annotated source: prokaryotic metabolite
annotated property: has_related_synonym
annotated target: prokaryotic metabolites
has db xref: ChEBI

greenhouse gas
type: Class
subclass of: chemical role
in subset: envoPolar

EC 3.* (hydrolase) inhibitor
type: Class
subclass of: enzyme inhibitor
definition: Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*).
has db xref: Wikipedia:Hydrolase
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.* (hydrolase) inhibitors
has_related_synonym: EC 3.* inhibitor
has_related_synonym: EC 3.* inhibitors
has_related_synonym: EC 3.*.*.* inhibitor
has_related_synonym: EC 3.*.*.* inhibitors
has_related_synonym: hydrolase (EC 3.*) inhibitor
has_related_synonym: hydrolase (EC 3.*) inhibitors
has_related_synonym: hydrolase inhibitor
has_related_synonym: hydrolase inhibitors
id: CHEBI:76759
in subset: 3 STAR

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.* (hydrolase) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.* inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.* inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.*.*.* inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.*.*.* inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase (EC 3.*) inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase (EC 3.*) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.* (hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: hydrolase inhibitors
has db xref: ChEBI

EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
type: Class
subclass of: EC 3.* (hydrolase) inhibitor
definition: Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
has_related_synonym: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
has_related_synonym: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
has_related_synonym: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
has_related_synonym: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
has_related_synonym: EC 3.5.* inhibitor
has_related_synonym: EC 3.5.* inhibitors
id: CHEBI:76764
in subset: 3 STAR

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.* inhibitors
has db xref: ChEBI

EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
type: Class
subclass of: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
definition: An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*).
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
has_related_synonym: EC 3.5.1.* inhibitor
has_related_synonym: EC 3.5.1.* inhibitors
has_related_synonym: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
has_related_synonym: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
id: CHEBI:76807
in subset: 3 STAR

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.* inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.* inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
annotated property: has_related_synonym
annotated target: non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
has db xref: ChEBI

fungal metabolite
type: Class
subclass of: eukaryotic metabolite
definition: Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds.
has alternative id: CHEBI:75765
has alternative id: CHEBI:76947
has OBO namespace: chebi_ontology
has_related_synonym: fungal metabolites
id: CHEBI:76946
in subset: 3 STAR

Axiom
annotated source: fungal metabolite
annotated property: has_related_synonym
annotated target: fungal metabolites
has db xref: ChEBI

bacterial metabolite
type: Class
subclass of: prokaryotic metabolite
definition: Any prokaryotic metabolite produced during a metabolic reaction in bacteria.
has alternative id: CHEBI:75760
has alternative id: CHEBI:76970
has OBO namespace: chebi_ontology
id: CHEBI:76969
in subset: 3 STAR

Escherichia coli metabolite
type: Class
subclass of: bacterial metabolite
definition: Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
has OBO namespace: chebi_ontology
has_related_synonym: E.coli metabolite
has_related_synonym: E.coli metabolites
has_related_synonym: Escherichia coli metabolites
id: CHEBI:76971
in subset: 3 STAR

Axiom
annotated source: Escherichia coli metabolite
annotated property: has_related_synonym
annotated target: E.coli metabolite
has db xref: ChEBI

Axiom
annotated source: Escherichia coli metabolite
annotated property: has_related_synonym
annotated target: E.coli metabolites
has db xref: ChEBI

Axiom
annotated source: Escherichia coli metabolite
annotated property: has_related_synonym
annotated target: Escherichia coli metabolites
has db xref: ChEBI

human metabolite
type: Class
subclass of: mammalian metabolite
definition: Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
has alternative id: CHEBI:75770
has alternative id: CHEBI:77123
has OBO namespace: chebi_ontology
has_related_synonym: H. sapiens metabolite
has_related_synonym: H. sapiens metabolites
has_related_synonym: Homo sapiens metabolite
has_related_synonym: Homo sapiens metabolites
id: CHEBI:77746
in subset: 3 STAR

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: H. sapiens metabolite
has db xref: ChEBI

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: H. sapiens metabolites
has db xref: ChEBI

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: Homo sapiens metabolite
has db xref: ChEBI

Axiom
annotated source: human metabolite
annotated property: has_related_synonym
annotated target: Homo sapiens metabolites
has db xref: ChEBI

EC 3.5.1.4 (amidase) inhibitor
type: Class
subclass of: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
definition: An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4).
has db xref: Wikipedia:Amidase
has OBO namespace: chebi_ontology
has_related_synonym: EC 3.5.1.4 (amidase) inhibitors
has_related_synonym: EC 3.5.1.4 inhibitor
has_related_synonym: EC 3.5.1.4 inhibitors
has_related_synonym: N-acetylaminohydrolase inhibitor
has_related_synonym: N-acetylaminohydrolase inhibitors
has_related_synonym: acylamidase inhibitor
has_related_synonym: acylamidase inhibitors
has_related_synonym: acylamide amidohydrolase inhibitor
has_related_synonym: acylamide amidohydrolase inhibitors
has_related_synonym: amidase (EC 3.5.1.4) inhibitor
has_related_synonym: amidase (EC 3.5.1.4) inhibitors
has_related_synonym: amidase inhibitor
has_related_synonym: amidase inhibitors
has_related_synonym: amidohydrolase inhibitor
has_related_synonym: amidohydrolase inhibitors
has_related_synonym: deaminase inhibitor
has_related_synonym: deaminase inhibitors
has_related_synonym: fatty acylamidase inhibitor
has_related_synonym: fatty acylamidase inhibitors
id: CHEBI:77941
in subset: 3 STAR

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.4 (amidase) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.4 inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: EC 3.5.1.4 inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: N-acetylaminohydrolase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: N-acetylaminohydrolase inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamidase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamidase inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamide amidohydrolase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: acylamide amidohydrolase inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase (EC 3.5.1.4) inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase (EC 3.5.1.4) inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidase inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidohydrolase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: amidohydrolase inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: deaminase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: deaminase inhibitors
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: fatty acylamidase inhibitor
has db xref: ChEBI

Axiom
annotated source: EC 3.5.1.4 (amidase) inhibitor
annotated property: has_related_synonym
annotated target: fatty acylamidase inhibitors
has db xref: ChEBI

food component
type: Class
subclass of: physiological role
definition: A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
has OBO namespace: chebi_ontology
has_related_synonym: dietary component
has_related_synonym: dietary components
has_related_synonym: food components
id: CHEBI:78295
in subset: 3 STAR

Axiom
annotated source: food component
annotated property: has_related_synonym
annotated target: dietary component
has db xref: ChEBI

Axiom
annotated source: food component
annotated property: has_related_synonym
annotated target: dietary components
has db xref: ChEBI

Axiom
annotated source: food component
annotated property: has_related_synonym
annotated target: food components
has db xref: ChEBI

environmental contaminant
type: Class
subclass of: chemical role

refrigerant
type: Class
subclass of: application
definition: A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a "R" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure.
has db xref: Wikipedia:Refrigerant
has OBO namespace: chebi_ontology
has_related_synonym: refrigerants
id: CHEBI:78433
in subset: 3 STAR

Axiom
annotated source: refrigerant
annotated property: has_related_synonym
annotated target: refrigerants
has db xref: ChEBI

alpha-amino acid zwitterion
type: Class
subclass of: amino acid zwitterion
subclass of: Restriction
  on property: is tautomer of
  some values from: alpha-amino acid
definition: An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.
charge: 0
formula: C2H4NO2R
mass: 74.059
monoisotopicmass: 74.02420
smiles: [NH3+]C([*])C([O-])=O
has alternative id: CHEBI:83409
has db xref: MetaCyc:Alpha-Amino-Acids
has OBO namespace: chebi_ontology
has_related_synonym: an alpha-amino acid
id: CHEBI:78608
in subset: 3 STAR

Axiom
annotated source: alpha-amino acid zwitterion
annotated property: hasDbXref
annotated target: MetaCyc:Alpha-Amino-Acids
source: SUBMITTER

Axiom
annotated source: alpha-amino acid zwitterion
annotated property: has_related_synonym
annotated target: an alpha-amino acid
has db xref: UniProt

divalent inorganic anion
type: Class
subclass of: inorganic anion
definition: Any inorganic anion with a valency of two.
has OBO namespace: chebi_ontology
has_related_synonym: divalent inorganic anions
id: CHEBI:79388
in subset: 3 STAR

Axiom
annotated source: divalent inorganic anion
annotated property: has_related_synonym
annotated target: divalent inorganic anions
has db xref: ChEBI

monovalent inorganic anion
type: Class
subclass of: inorganic anion
definition: Any inorganic anion with a valency of one.
has OBO namespace: chebi_ontology
has_related_synonym: monovalent inorganic anions
id: CHEBI:79389
in subset: 3 STAR

Axiom
annotated source: monovalent inorganic anion
annotated property: has_related_synonym
annotated target: monovalent inorganic anions
has db xref: ChEBI

portion of material
type: Class
subclass of: material entity
definition: An independent material continuant that is self-connected and retains its identity over time.
id: CHMO:0000993

Axiom
annotated source: portion of material
annotated property: definition
annotated target: An independent material continuant that is self-connected and retains its identity over time.
has db xref: https://orcid.org/0000-0001-5985-7429

sensor
type: Class
subclass of: OBI_0000968
definition: A piece of apparatus that is used to measure a physical quantity.
id: CHMO:0002793

Axiom
annotated source: sensor
annotated property: definition
annotated target: A piece of apparatus that is used to measure a physical quantity.
has db xref: https://orcid.org/0000-0001-5985-7429

dosimetry
type: Class
subclass of: OBI_0000070
subclass of: Restriction
  on property: has participant
  some values from: dosimeter
definition: Measurement of the dose of a substance taken up by an object.
id: CHMO:0002796

Axiom
annotated source: dosimetry
annotated property: definition
annotated target: Measurement of the dose of a substance taken up by an object.
has db xref: https://doi.org/10.1039/9781847559753-00013

dosimeter
type: Class
subclass of: sensor
definition: A sensor that is used to measure the dose of a substance taken by up an object.
id: CHMO:0002797

Axiom
annotated source: dosimeter
annotated property: definition
annotated target: A sensor that is used to measure the dose of a substance taken by up an object.
has db xref: https://doi.org/10.1039/9781847559753-00013

geographic feature
type: Class
subclass of: astronomical body part
definition: An astrononmical body part which delimited by physical discontinuities with its surroundings.
has db xref: https://en.wikipedia.org/wiki/Geographic_feature
has exact synonym: macroscopic spatial feature
in subset: envoPolar
comment: This class is being depopulated and will be filled only with inferred subclasses. Please do not use this for direct annotation, favouring instead a more descriptive subclass.

anthropogenic geographic feature
type: Class
equivalent class: Class
  intersection of: geographic feature
  intersection of: Restriction
    on property: formed as result of
    some values from: anthropisation
subclass of: geographic feature
subclass of: Restriction
  on property: formed as result of
  some values from: anthropisation
definition: An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
has db xref: FTT:78
has db xref: TGN:50001
has_related_synonym: man-made feature
has_related_synonym: manmade feature

Axiom
annotated source: anthropogenic geographic feature
annotated property: definition
annotated target: An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
has db xref: ORCID:0000-0002-4366-3088

mine tailing
type: Class
subclass of: anthropogenic environmental material
definition: Mine tailings are the materials left over after the process of separating the valuable fraction from the uneconomic fraction (gangue) of an ore.
has broad synonym: tailing
has db xref: FTT:625
has db xref: FTT:631

Axiom
annotated source: mine tailing
annotated property: definition
annotated target: Mine tailings are the materials left over after the process of separating the valuable fraction from the uneconomic fraction (gangue) of an ore.
has db xref: https://en.wikipedia.org/wiki/Tailings

Axiom
annotated source: mine tailing
annotated property: hasBroadSynonym
annotated target: tailing
has db xref: ADL:FTT

transport feature
type: Class
subclass of: human construction
subclass of: Restriction
  on property: participates in
  some values from: usage of an environment for transportation
definition: A construction which enables the movement of humans, their animals or their vehicles.
has db xref: FTT:83

Axiom
annotated source: transport feature
annotated property: definition
annotated target: A construction which enables the movement of humans, their animals or their vehicles.
has db xref: MA:ma

hydrographic feature
type: Class
subclass of: geographic feature
subclass of: RO_0002577
definition: A geographical feature associated with water.
has db xref: FTT:131
has db xref: FTT:280
has db xref: FTT:711
has db xref: FTT:761
has db xref: FTT:824
has db xref: FTT:825
has db xref: FTT:826
has db xref: FTT:827
has db xref: FTT:828
has db xref: FTT:829
has db xref: Geonames:H.OVF
has_related_synonym: fluvial feature
in subset: envoPolar

Axiom
annotated source: hydrographic feature
annotated property: definition
annotated target: A geographical feature associated with water.
has db xref: MA:ma

Axiom
annotated source: hydrographic feature
annotated property: has_related_synonym
annotated target: fluvial feature
has db xref: ADL:FTT

ocean
type: Class
subclass of: marine water body
subclass of: saline water body
subclass of: Restriction
  on property: composed primarily of
  some values from: sea water
definition: A marine water body which is constitutes the majority of an astronomical body's hydrosphere.
has db xref: EcoLexicon:ocean
has db xref: FTT:1019
has db xref: FTT:943
has db xref: Geonames:H.OCN
has db xref: LTER:695
has db xref: SWEETRealm:Ocean
has db xref: TGN:21102
has db xref: https://en.wikipedia.org/wiki/Ocean
has_related_synonym: ocean region
in subset: envoMarine
in subset: envoPolar

Axiom
annotated source: ocean
annotated property: hasDbXref
annotated target: LTER:695
has db xref: https://vocab.lternet.edu/vocab/vocab/index.php

Axiom
annotated source: ocean
annotated property: has_related_synonym
annotated target: ocean region
has db xref: ADL:FTT

sea
type: Class
subclass of: marine water body
subclass of: saline water body
subclass of: Restriction
  on property: composed primarily of
  some values from: sea water
definition: A large expanse of saline water usually connected with an ocean.
has db xref: EcoLexicon:sea
has db xref: FTT:233
has db xref: FTT:830
has db xref: Geonames:H.SEA
has db xref: TGN:21103
has db xref: https://en.wikipedia.org/wiki/Sea
has narrow synonym: channel
has narrow synonym: closed sea
has narrow synonym: marginal sea
has narrow synonym: open sea
has narrow synonym: open sound
has narrow synonym: open water
in subset: envoMarine
in subset: envoPolar

Axiom
annotated source: sea
annotated property: definition
annotated target: A large expanse of saline water usually connected with an ocean.
has db xref: https://en.wikipedia.org/wiki/Sea

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: closed sea
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: marginal sea
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: open sea
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: open sound
has db xref: USGS:SDTS

Axiom
annotated source: sea
annotated property: hasNarrowSynonym
annotated target: open water
has db xref: USGS:SDTS

saline hydrographic feature
type: Class
equivalent class: Class
  union of: Class
    intersection of: hydrographic feature
    intersection of: Restriction
      on property: adjacent to
      some values from: Class
        intersection of: water body
        intersection of: Restriction
  union of: Restriction
    on property: partially_surrounded_by
    some values from: saline water
subclass of: hydrographic feature
definition: A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
has OBO namespace: ENVO
id: ENVO:00000017

Axiom
annotated source: saline hydrographic feature
annotated property: definition
annotated target: A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
has db xref: https://en.wikipedia.org/wiki/Salinity

saline lake
type: Class
equivalent class: Class
  intersection of: lake
  intersection of: Restriction
    on property: composed primarily of
    some values from: saline water
subclass of: lake
subclass of: saline water body
definition: A lake whose water contains a considerable concentration of dissolved salts.
has db xref: FTT:221
has db xref: FTT:907
has db xref: Geonames:H.LKN
has db xref: Geonames:H.LKSN
has db xref: TGN:21116
has db xref: https://en.wikipedia.org/wiki/Saline_lake
has exact synonym: salt lake
has_related_synonym: salina
has_related_synonym: soda lake

Axiom
annotated source: saline lake
annotated property: definition
annotated target: A lake whose water contains a considerable concentration of dissolved salts.
has db xref: MA:ma

Axiom
annotated source: saline lake
annotated property: hasExactSynonym
annotated target: salt lake
has db xref: USGS:SDTS

Axiom
annotated source: saline lake
annotated property: has_related_synonym
annotated target: salina
has db xref: USGS:SDTS

lake
type: Class
subclass of: lentic water body
subclass of: Restriction
  on property: partially_surrounded_by
  some values from: landmass
subclass of: Restriction
  on property: located in
  some values from: depressed landform
definition: A body of water or other liquid of considerable size contained in a depression on a landmass.
has db xref: EcoLexicon:lake
has db xref: FTT:221
has db xref: FTT:704
has db xref: FTT:909
has db xref: Geonames:H.LK
has db xref: Geonames:H.LKS
has db xref: LTER:278
has db xref: SPIRE:Lake_or_pond
has db xref: SWEETRealm:Lake
has db xref: TGN:21114
has db xref: TGN:21115
has narrow synonym: catch basin
has narrow synonym: open water
has narrow synonym: tarn
has_related_synonym: broad
has_related_synonym: llyn
has_related_synonym: loch
has_related_synonym: lochan
has_related_synonym: lough
has_related_synonym: mere
has_related_synonym: mortlake
has_related_synonym: pasteuer lake
in subset: envoPolar

Axiom
annotated source: lake
annotated property: definition
annotated target: A body of water or other liquid of considerable size contained in a depression on a landmass.
has db xref: https://en.wikipedia.org/wiki/Lake

Axiom
annotated source: lake
annotated property: hasDbXref
annotated target: LTER:278
has db xref: https://vocab.lternet.edu/vocab/vocab/index.php

Axiom
annotated source: lake
annotated property: hasNarrowSynonym
annotated target: catch basin
has db xref: USGS:SDTS

Axiom
annotated source: lake
annotated property: hasNarrowSynonym
annotated target: open water
has db xref: USGS:SDTS

Axiom
annotated source: lake
annotated property: hasNarrowSynonym
annotated target: tarn
has db xref: ADL:FTT

Axiom
annotated source: lake
annotated property: has_related_synonym
annotated target: lochan
has db xref: ADL:FTT

Axiom
annotated source: lake
annotated property: has_related_synonym
annotated target: mortlake
has db xref: USGS:SDTS

Axiom
annotated source: lake
annotated property: has_related_synonym
annotated target: pasteuer lake
has db xref: USGS:SDTS

sand pit quarry
type: Class
equivalent class: Class
  intersection of: quarry
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: material extraction process
      intersection of: Restriction
        on property: has output
        some values from: sand
subclass of: quarry
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: material extraction process
    intersection of: Restriction
      on property: has output
      some values from: sand
definition: A quarry from which sand is extracted.
has db xref: https://en.wikipedia.org/wiki/Sand_pit
has OBO namespace: ENVO
has_related_synonym: sand pit
id: ENVO:00000028

Axiom
annotated source: sand pit quarry
annotated property: definition
annotated target: A quarry from which sand is extracted.
has db xref: MA:ma

wetland area
type: Class
equivalent class: Class
  intersection of: vegetated area
  intersection of: Restriction
    on property: overlaps
    some values from: wetland ecosystem
subclass of: vegetated area
subclass of: Restriction
  on property: overlaps
  some values from: wetland ecosystem
definition: An vegetated area which overlaps a wetland ecosystem.
has_related_synonym: WetlandRegion

Axiom
annotated source: wetland area
annotated property: definition
annotated target: An vegetated area which overlaps a wetland ecosystem.
has db xref: https://en.wikipedia.org/wiki/Wetland

Axiom
annotated source: wetland area
annotated property: has_related_synonym
annotated target: WetlandRegion
has db xref: NASA:earthrealm

water body
type: Class
subclass of: water mass
subclass of: Restriction
  on property: is part of
  some values from: hydrosphere
subclass of: Restriction
  on property: formed as result of
  some values from: water accumulation process
subclass of: Restriction
  on property: composed primarily of
  some values from: water
definition: An accumulation of water of varying size.
has broad synonym: hydrographic feature
has db xref: EcoLexicon:waterbody
has db xref: FTT:131
has db xref: FTT:280
has db xref: FTT:827
has db xref: SWEETRealm:BodyOfWater
has db xref: TGN:21100
has db xref: TGN:21101
has db xref: https://en.wikipedia.org/wiki/Water_body
has exact synonym: aquatic feature
has exact synonym: bodies of water
has exact synonym: body of water
has exact synonym: waterbody
comment: The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.

Axiom
annotated source: water body
annotated property: definition
annotated target: An accumulation of water of varying size.
has db xref: https://en.wikipedia.org/wiki/Body_of_water

Axiom
annotated source: water body
annotated property: hasBroadSynonym
annotated target: hydrographic feature
has db xref: ADL:FTT

Axiom
annotated source: water body
annotated property: hasExactSynonym
annotated target: bodies of water
has db xref: Getty:TGN

Axiom
annotated source: water body
annotated property: hasExactSynonym
annotated target: body of water
has db xref: ADL:FTT

Axiom
annotated source: water body
annotated property: hasExactSynonym
annotated target: body of water
has db xref: Getty:TGN

human construction
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: output of
    some values from: human-directed construction process
subclass of: astronomical body part
subclass of: construction
subclass of: Restriction
  on property: is part of
  some values from: technosphere
subclass of: Restriction
  on property: output of
  some values from: human-directed construction process
definition: A construction that has been assembled by deliberate human effort.
editor note: "constructed" should probably be made something like a quality and this class obsoleted or filled only by inference
has exact synonym: constructed feature

Axiom
annotated source: human construction
annotated property: definition
annotated target: A construction that has been assembled by deliberate human effort.
has db xref: MA:ma

building
type: Class
subclass of: human construction
subclass of: Restriction
  on property: has part
  some values from: building part
definition: A permanent walled and roofed construction.
has db xref: FTT:42
has db xref: Geonames:S.BLDG
has db xref: LTER:76
has db xref: TGN:51011
has db xref: https://en.wikipedia.org/wiki/Building

Axiom
annotated source: building
annotated property: definition
annotated target: A permanent walled and roofed construction.
has db xref: USGS:SDTS

mine
type: Class
subclass of: human construction
subclass of: Restriction
  on property: participates in
  some values from: mining
definition: An excavation in the Earth for the purpose of extracting earth materials.
has db xref: EcoLexicon:mine
has db xref: FTT:14
has db xref: FTT:968
has db xref: Geonames:L.MNA
has db xref: Geonames:S.MN
has db xref: TGN:54211
has db xref: TGN:54212

Axiom
annotated source: mine
annotated property: definition
annotated target: An excavation in the Earth for the purpose of extracting earth materials.
has db xref: USGS:SDTS
has db xref: https://en.wikipedia.org/wiki/Mine

agricultural ecosystem
type: Class
equivalent class: Class
  union of: Class
    intersection of: ecosystem
    intersection of: Restriction
      on property: participates in
      some values from: agricultural process
  union of: Restriction
    on property: formed as result of
    some values from: agricultural land conversion process
subclass of: anthropised ecosystem
has db xref: FTT:1246
has db xref: FTT:1247
has db xref: FTT:44
has db xref: FTT:45
has db xref: FTT:46
has db xref: FTT:48
has db xref: FTT:50
has db xref: FTT:51
has db xref: FTT:52
has db xref: FTT:57
has db xref: FTT:60
has db xref: FTT:62
has db xref: FTT:63
has db xref: FTT:64
has db xref: FTT:72
has db xref: FTT:74
has db xref: Geonames:L.AGRC
has db xref: Geonames:L.RESA
has db xref: Geonames:S.NSY
has db xref: TGN:55001
has narrow synonym: barn
has narrow synonym: cattle dipping tank
has narrow synonym: corral
has narrow synonym: dairy
has narrow synonym: feedlot
has narrow synonym: grange
has narrow synonym: grazing allotment
has narrow synonym: irrigated field
has narrow synonym: nursery
has narrow synonym: pastoral site
has narrow synonym: sheepfold
has narrow synonym: stockyard
has_related_synonym: AgriculturalLands
has_related_synonym: agricultural colony
has_related_synonym: agricultural facility
has_related_synonym: agricultural land
has_related_synonym: agricultural reserve
has_related_synonym: agricultural site
comment: As with other classes that are "features", the subclasses of this class are being moved to more informative locations. Their relation to agriculture will be modelled by something more akin to a quality or relation to an agricultural process.

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: barn
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: cattle dipping tank
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: corral
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: dairy
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: feedlot
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: grange
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: grazing allotment
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: irrigated field
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: nursery
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: nursery
has db xref: Geonames:feature

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: pastoral site
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: sheepfold
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: hasNarrowSynonym
annotated target: stockyard
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: has_related_synonym
annotated target: AgriculturalLands
has db xref: NASA:earthrealm

Axiom
annotated source: agricultural ecosystem
annotated property: has_related_synonym
annotated target: agricultural colony
has db xref: Geonames:feature

Axiom
annotated source: agricultural ecosystem
annotated property: has_related_synonym
annotated target: agricultural facility
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: has_related_synonym
annotated target: agricultural land
has db xref: Getty:TGN

Axiom
annotated source: agricultural ecosystem
annotated property: has_related_synonym
annotated target: agricultural reserve
has db xref: ADL:FTT

Axiom
annotated source: agricultural ecosystem
annotated property: has_related_synonym
annotated target: agricultural reserve
has db xref: Geonames:feature

Axiom
annotated source: agricultural ecosystem
annotated property: has_related_synonym
annotated target: agricultural site
has db xref: ADL:FTT

desert area
type: Class
equivalent class: Class
  intersection of: area of barren land
  intersection of: Restriction
    on property: has quality
    some values from: arid
subclass of: area of barren land
subclass of: Restriction
  on property: has quality
  some values from: arid
definition: A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
has db xref: EcoLexicon:desert
has db xref: FTT:1
has db xref: FTT:188
has db xref: Geonames:T.DSRT
has db xref: LTER:147
has db xref: SWEETRealm:Desert
has db xref: TGN:21201
has db xref: https://en.wikipedia.org/wiki/Desert
has_related_synonym: arid region
in subset: envoPolar

Axiom
annotated source: desert area
annotated property: definition
annotated target: A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
has db xref: USGS:SDTS

Axiom
annotated source: desert area
annotated property: has_related_synonym
annotated target: arid region
has db xref: ADL:FTT

valley
type: Class
subclass of: geographic basin
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001154
subclass of: Restriction
  on property: formed as result of
  some values from: planetary erosion
definition: A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
has db xref: EcoLexicon:valley
has db xref: FTT:158
has db xref: FTT:166
has db xref: FTT:418
has db xref: FTT:761
has db xref: FTT:811
has db xref: FTT:949
has db xref: Geonames:T.GRGE
has db xref: Geonames:T.VAL
has db xref: Geonames:T.VALS
has db xref: SWEETRealm:Valley
has db xref: TGN:21425
has db xref: TGN:21451
has db xref: TGN:21452
has db xref: TGN:21453
has narrow synonym: chasm
has narrow synonym: coulee
has narrow synonym: dale
has narrow synonym: glacial gorge
has narrow synonym: glacial trough
has narrow synonym: gulch
has narrow synonym: gully
has narrow synonym: median valley
has narrow synonym: shelf valley
has_related_synonym: glen
has_related_synonym: goe
has_related_synonym: gorge
has_related_synonym: graben
has_related_synonym: hollow
has_related_synonym: lavaka
has_related_synonym: moat
has_related_synonym: ravine
has_related_synonym: re-entrant
has_related_synonym: seachannel
has_related_synonym: strath
has_related_synonym: trench
has_related_synonym: vale
has_related_synonym: water gap
comment: Valleys are typically located between hills our mountains.

Axiom
annotated source: valley
annotated property: definition
annotated target: A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
has db xref: ADL:FTT
has db xref: https://en.wikipedia.org/wiki/Valley

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: chasm
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: coulee
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: dale
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: glacial gorge
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: glacial trough
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: gulch
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: gully
has db xref: Getty:TGN

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: gully
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: median valley
has db xref: ADL:FTT

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: median valley
has db xref: Geonames:feature

Axiom
annotated source: valley
annotated property: hasNarrowSynonym
annotated target: shelf valley
has db xref: Geonames:feature

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: glen
has db xref: ADL:FTT

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: glen
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: goe
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: gorge
has db xref: Geonames:feature

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: gorge
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: graben
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: hollow
has db xref: ADL:FTT

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: hollow
has db xref: Getty:TGN

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: hollow
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: moat
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: ravine
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: re-entrant
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: seachannel
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: strath
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: trench
has db xref: USGS:SDTS

Axiom
annotated source: valley
annotated property: has_related_synonym
annotated target: water gap
has db xref: USGS:SDTS

grassland area
type: Class
subclass of: vegetated area
subclass of: Restriction
  on property: overlaps
  some values from: grassland ecosystem
definition: An area in which grasses (Graminae) are a significant component of the vegetation.
has_related_synonym: grazing area
has_related_synonym: herbaceous area

Axiom
annotated source: grassland area
annotated property: definition
annotated target: An area in which grasses (Graminae) are a significant component of the vegetation.
has db xref: https://en.wikipedia.org/wiki/Grassland

Axiom
annotated source: grassland area
annotated property: has_related_synonym
annotated target: grazing area
has db xref: Getty:TGN

Axiom
annotated source: grassland area
annotated property: has_related_synonym
annotated target: herbaceous area
has db xref: USGS:SDTS

woodland area
type: Class
subclass of: vegetated area
definition: Land having a cover of trees, shrubs, or both.
has db xref: FTT:1083
has db xref: FTT:505
has db xref: FTT:506
has db xref: FTT:719
has db xref: FTT:774
has db xref: Geonames:V.GRVPN
has db xref: LTER:503
has db xref: SWEETRealm:Break
has db xref: SWEETRealm:Scrub
has db xref: TGN:21631
has db xref: TGN:21632
has db xref: TGN:21641
has db xref: https://en.wikipedia.org/wiki/Woodland
has narrow synonym: brigalow
has narrow synonym: pine grove
has_related_synonym: caatinga
has_related_synonym: chanaral
has_related_synonym: coniferous forest
has_related_synonym: copse
has_related_synonym: deciduous forest
has_related_synonym: equatorial forest
has_related_synonym: equatorial rain forest
has_related_synonym: garique
has_related_synonym: grove
has_related_synonym: jungle
has_related_synonym: mallee scrub
has_related_synonym: monsoon forest
has_related_synonym: moor
has_related_synonym: mott
has_related_synonym: motte
has_related_synonym: mulga
has_related_synonym: mulga scrub
has_related_synonym: rain forest
has_related_synonym: reforested area
has_related_synonym: sagebrush
has_related_synonym: scrub
has_related_synonym: shrub
has_related_synonym: silva
has_related_synonym: stand
has_related_synonym: taiga
has_related_synonym: thicket
has_related_synonym: thorn forest
has_related_synonym: wood
has_related_synonym: wooded area

Axiom
annotated source: woodland area
annotated property: definition
annotated target: Land having a cover of trees, shrubs, or both.
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: hasNarrowSynonym
annotated target: brigalow
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: hasNarrowSynonym
annotated target: pine grove
has db xref: Geonames:feature

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: caatinga
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: chanaral
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: coniferous forest
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: copse
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: deciduous forest
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: equatorial forest
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: equatorial rain forest
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: garique
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: grove
has db xref: ADL:FTT

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: grove
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: jungle
has db xref: Getty:TGN

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: jungle
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: mallee scrub
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: monsoon forest
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: moor
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: motte
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: mulga
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: mulga scrub
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: rain forest
has db xref: ADL:FTT

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: rain forest
has db xref: Getty:TGN

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: reforested area
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: sagebrush
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: scrub
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: shrub
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: silva
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: stand
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: taiga
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: thicket
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: thorn forest
has db xref: USGS:SDTS

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: wood
has db xref: Getty:TGN

Axiom
annotated source: woodland area
annotated property: has_related_synonym
annotated target: wooded area
has db xref: USGS:SDTS

forested area
type: Class
equivalent class: Class
  intersection of: woodland area
  intersection of: Restriction
    on property: overlaps
    some values from: forest ecosystem
subclass of: woodland area
subclass of: Restriction
  on property: overlaps
  some values from: forest ecosystem
definition: An area with a high density of trees. A small forest may be called a wood.
has db xref: EcoLexicon:forest
has db xref: FTT:258
has db xref: FTT:506
has db xref: FTT:715
has db xref: FTT:717
has db xref: Geonames:V.FRST
has db xref: LTER:2
has db xref: SWEETRealm:Forest
has db xref: TGN:21641
has db xref: TGN:21642
has db xref: TGN:21645
has db xref: https://en.wikipedia.org/wiki/Forest
has_related_synonym: forest
has_related_synonym: wood
comment: The definitions of forest can vary greatly, and different classes will be needed to support the major categories. Tree cover alone is not enough to distinguish between forests and plantations. The international definition proposed by the 2010 FAO Forestry Resource Assessment: "land spanning more than 0.5 ha with trees higher than 5 metres and canopy cover of more than 10 percent, or trees able to reach these thresholds in situ . It does not include land that is predominantly under agricultural or urban land use." - FAO. 2010. Global forest resources assessment 2010, Main report, FAO Forestry Paper 163. Rome.

Axiom
annotated source: forested area
annotated property: definition
annotated target: An area with a high density of trees. A small forest may be called a wood.
has db xref: https://en.wikipedia.org/wiki/Forest

Axiom
annotated source: forested area
annotated property: has_related_synonym
annotated target: forest
has db xref: Geonames:feature

Axiom
annotated source: forested area
annotated property: has_related_synonym
annotated target: wood
has db xref: Getty:TGN

agricultural field
type: Class
subclass of: field
definition: A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
has broad synonym: agricultural site
has db xref: EcoLexicon:field
has db xref: FTT:45
has db xref: FTT:61
has db xref: Geonames:L.FLD
has db xref: SWEETRealm:Field
has db xref: TGN:21456
has_related_synonym: cropland
has_related_synonym: grassland

Axiom
annotated source: agricultural field
annotated property: definition
annotated target: A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
has db xref: https://en.wikipedia.org/wiki/Field_%28agriculture%29

Axiom
annotated source: agricultural field
annotated property: hasBroadSynonym
annotated target: agricultural site
has db xref: ADL:FTT

Axiom
annotated source: agricultural field
annotated property: has_related_synonym
annotated target: cropland
has db xref: USGS:SDTS

Axiom
annotated source: agricultural field
annotated property: has_related_synonym
annotated target: grassland
has db xref: USGS:SDTS

dry valley
type: Class
equivalent class: Class
  intersection of: valley
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001824
subclass of: valley
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001824
definition: A valley which no longer has water flowing or accumulating over its surface.
has db xref: https://en.wikipedia.org/wiki/Dry_valley
comment: Typically found in either Karst (limestone) or chalk terrain.

Axiom
annotated source: dry valley
annotated property: definition
annotated target: A valley which no longer has water flowing or accumulating over its surface.
has db xref: https://en.wikipedia.org/wiki/Dry_valley

permafrost
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001306
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: soil
    union of: sediment
definition: An environmental material which is 1) composed primarily of soil or rock and included ice or organic material and 2) at or below the freezing point of water for two or more years.
has db xref: Permafrost
has db xref: LTER:408
has db xref: https://en.wikipedia.org/wiki/Permafrost
in subset: envoPolar
comment: Ice is not always present, as may be in the case of nonporous bedrock, but it frequently occurs and it may be in amounts exceeding the potential hydraulic saturation of the ground material.

Axiom
annotated source: permafrost
annotated property: definition
annotated target: An environmental material which is 1) composed primarily of soil or rock and included ice or organic material and 2) at or below the freezing point of water for two or more years.
has db xref: https://orcid.org/0000-0003-4808-4736
has db xref: https://en.wikipedia.org/wiki/Permafrost

ocean current
type: Class
equivalent class: Class
  intersection of: marine current
  intersection of: Restriction
    on property: is part of
    some values from: ocean
subclass of: marine current
subclass of: Restriction
  on property: is part of
  some values from: ocean
definition: The region occupied by any more or less continuous, directed movement of ocean water that flows in one of the Earth's oceans. Ocean Currents are rivers of hot or cold water within the ocean. The currents are generated from the forces acting upon the water like the earth's rotation, the wind, the temperature and salinity differences and the gravitation of the moon. The depth contours, the shoreline and other movements influence the direction and strength of the movements of water that forms a given current.
has broad synonym: current
has db xref: EcoLexicon:ocean_current
has db xref: FTT:597
has db xref: FTT:598
has db xref: Geonames:H.CRNT
has db xref: LTER:386
has db xref: SWEETRealm:OceanCurrent
has db xref: TGN:21169
has db xref: https://en.wikipedia.org/wiki/Ocean_current
comment: Subclasses of this class are to be populated by inference. Definition modified from http://en.wikipedia.org/wiki/Ocean_current.

Axiom
annotated source: ocean current
annotated property: definition
annotated target: The region occupied by any more or less continuous, directed movement of ocean water that flows in one of the Earth's oceans. Ocean Currents are rivers of hot or cold water within the ocean. The currents are generated from the forces acting upon the water like the earth's rotation, the wind, the temperature and salinity differences and the gravitation of the moon. The depth contours, the shoreline and other movements influence the direction and strength of the movements of water that forms a given current.
has db xref: BS:bs

Axiom
annotated source: ocean current
annotated property: hasBroadSynonym
annotated target: current
has db xref: ADL:FTT

Axiom
annotated source: ocean current
annotated property: hasBroadSynonym
annotated target: current
has db xref: Geonames:feature

Axiom
annotated source: ocean current
annotated property: hasBroadSynonym
annotated target: current
has db xref: Getty:TGN

elevated landform
type: Class
equivalent class: Class
  intersection of: landform
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001688
subclass of: landform
subclass of: Restriction
  on property: has part
  some values from: slope
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001688
definition: A landform elevated above the surrounding area.
has broad synonym: elevation
has db xref: LTER:177
has db xref: SWEETRealm:Elevation
has db xref: https://en.wikipedia.org/wiki/Elevation

Axiom
annotated source: elevated landform
annotated property: definition
annotated target: A landform elevated above the surrounding area.
has db xref: MA:ma

solid astronomical body part
type: Class
equivalent class: Class
  intersection of: astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: solid environmental material
subclass of: compound astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: solid environmental material
definition: A part of an astronomical body which is primarily composed of solid material.
has db xref: EcoLexicon:landform
has db xref: EcoLexicon:landforms
has db xref: FTT:754
has db xref: FTT:96
has db xref: SWEETRealm:Landform
has db xref: TGN:21400
has db xref: TGN:21401
has_related_synonym: geological feature
has_related_synonym: landform
has_related_synonym: physiographic feature

Axiom
annotated source: solid astronomical body part
annotated property: definition
annotated target: A part of an astronomical body which is primarily composed of solid material.
has db xref: https://en.wikipedia.org/wiki/Landform

Axiom
annotated source: solid astronomical body part
annotated property: has_related_synonym
annotated target: geological feature
has db xref: ADL:FTT

swamp ecosystem
type: Class
subclass of: wetland ecosystem
definition: A wetland ecosystem in which land mass is permanently inundated by shallow bodies of water, generally with a substantial number of hummocks, or dry-land protrusions.
has broad synonym: wetland
has db xref: EcoLexicon:swamp
has db xref: FTT:1226
has db xref: FTT:185
has db xref: FTT:480
has db xref: Geonames:H.SWMP
has db xref: SPIRE:Swamp
has db xref: SWEETRealm:Swamp
has db xref: TGN:21324
has db xref: https://en.wikipedia.org/wiki/Swamp
has exact synonym: Swamp
has exact synonym: swamp
has_related_synonym: cienaga

Axiom
annotated source: swamp ecosystem
annotated property: definition
annotated target: A wetland ecosystem in which land mass is permanently inundated by shallow bodies of water, generally with a substantial number of hummocks, or dry-land protrusions.
has db xref: https://en.wikipedia.org/wiki/Swamp

Axiom
annotated source: swamp ecosystem
annotated property: hasBroadSynonym
annotated target: wetland
has db xref: ADL:FTT

Axiom
annotated source: swamp ecosystem
annotated property: hasBroadSynonym
annotated target: wetland
has db xref: USGS:SDTS

Axiom
annotated source: swamp ecosystem
annotated property: hasExactSynonym
annotated target: Swamp
has db xref: NASA:earthrealm

Axiom
annotated source: swamp ecosystem
annotated property: hasExactSynonym
annotated target: swamp
has db xref: Geonames:feature

Axiom
annotated source: swamp ecosystem
annotated property: has_related_synonym
annotated target: cienaga
has db xref: ADL:FTT

glacial valley
type: Class
subclass of: valley
definition: A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
has db xref: https://en.wikipedia.org/wiki/Glacial_valley
has OBO namespace: ENVO
has_related_synonym: valley
id: ENVO:00000248
in subset: envoPolar

Axiom
annotated source: glacial valley
annotated property: definition
annotated target: A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
has db xref: MA:ma

Axiom
annotated source: glacial valley
annotated property: has_related_synonym
annotated target: valley
has db xref: USGS:SDTS

quarry
type: Class
equivalent class: Class
  intersection of: open-pit mine
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: material extraction process
      intersection of: Restriction
        on property: has output
        some values from: rock
subclass of: open-pit mine
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: material extraction process
    intersection of: Restriction
      on property: has output
      some values from: rock
definition: An open-pit mine from which rock or minerals are extracted.
has db xref: EcoLexicon:quarry
has db xref: FTT:14
has db xref: FTT:974
has db xref: Geonames:S.MNQR
has db xref: TGN:54217
has db xref: https://en.wikipedia.org/wiki/Quarry
has OBO namespace: ENVO
id: ENVO:00000284

Axiom
annotated source: quarry
annotated property: definition
annotated target: An open-pit mine from which rock or minerals are extracted.
has db xref: https://en.wikipedia.org/wiki/Quarry

ice field
type: Class
subclass of: field
subclass of: cryoform
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
definition: A field of ice, formed in regions of perennial frost.
has db xref: FTT:758
has db xref: FTT:835
has db xref: FTT:836
has db xref: FTT:837
has db xref: FTT:838
has db xref: FTT:839
has db xref: FTT:840
has db xref: FTT:841
has db xref: FTT:842
has db xref: SWEETRealm:IceField
has db xref: TGN:21147
has narrow synonym: ice patch
has narrow synonym: iceberg
has narrow synonym: icefall
has_related_synonym: IceSheet
has_related_synonym: ice field
has_related_synonym: ice sheet
has_related_synonym: icecap
in subset: envoPolar
comment: Ice mass may need to be resolved from ice field, the former referring simply to an accumulation of ice.

Axiom
annotated source: ice field
annotated property: definition
annotated target: A field of ice, formed in regions of perennial frost.
has db xref: ADL:FTT

Axiom
annotated source: ice field
annotated property: hasNarrowSynonym
annotated target: ice patch
has db xref: ADL:FTT

Axiom
annotated source: ice field
annotated property: hasNarrowSynonym
annotated target: iceberg
has db xref: ADL:FTT

Axiom
annotated source: ice field
annotated property: hasNarrowSynonym
annotated target: icefall
has db xref: ADL:FTT

Axiom
annotated source: ice field
annotated property: has_related_synonym
annotated target: IceSheet
has db xref: NASA:earthrealm

Axiom
annotated source: ice field
annotated property: has_related_synonym
annotated target: ice field
has db xref: ADL:FTT

Axiom
annotated source: ice field
annotated property: has_related_synonym
annotated target: ice sheet
has db xref: ADL:FTT

Axiom
annotated source: ice field
annotated property: has_related_synonym
annotated target: icecap
has db xref: ADL:FTT

scrubland area
type: Class
subclass of: vegetated area
definition: Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees.
has db xref: FTT:1191
has db xref: FTT:262
has db xref: FTT:374
has db xref: FTT:473
has db xref: FTT:792
has db xref: FTT:991
has db xref: Geonames:V.SCRB
has db xref: SWEETRealm:Scrub
has db xref: TGN:21644
has db xref: TGN:21652
has db xref: https://en.wikipedia.org/wiki/Scrubland
has exact synonym: scrubland
has_related_synonym: bush
has_related_synonym: chaparal area
has_related_synonym: heath
has_related_synonym: scrub
has_related_synonym: shrubland

Axiom
annotated source: scrubland area
annotated property: definition
annotated target: Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees.
has db xref: ADL:FTT

Axiom
annotated source: scrubland area
annotated property: hasExactSynonym
annotated target: scrubland
has db xref: Geonames:feature

Axiom
annotated source: scrubland area
annotated property: has_related_synonym
annotated target: bush
has db xref: ADL:FTT

Axiom
annotated source: scrubland area
annotated property: has_related_synonym
annotated target: bush
has db xref: Getty:TGN

Axiom
annotated source: scrubland area
annotated property: has_related_synonym
annotated target: chaparal area
has db xref: ADL:FTT

Axiom
annotated source: scrubland area
annotated property: has_related_synonym
annotated target: heath
has db xref: ADL:FTT

Axiom
annotated source: scrubland area
annotated property: has_related_synonym
annotated target: scrub
has db xref: USGS:SDTS

Axiom
annotated source: scrubland area
annotated property: has_related_synonym
annotated target: shrubland
has db xref: ADL:FTT

Axiom
annotated source: scrubland area
annotated property: has_related_synonym
annotated target: shrubland
has db xref: USGS:SDTS

depressed landform
type: Class
equivalent class: Class
  intersection of: landform
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001689
subclass of: landform
subclass of: Restriction
  on property: has part
  some values from: slope
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001689
subclass of: Restriction
  on property: has quality
  some values from: PATO_0002143
definition: A landform sunken or depressed below the surrounding area.
editor note: Clarify that this pertains to the planetary crust and create superclass for general topological depressions. https://github.com/EnvironmentOntology/envo/issues/486
has broad synonym: depression
has db xref: EcoLexicon:depression
has db xref: FTT:175
has db xref: FTT:215
has db xref: FTT:216
has db xref: Geonames:T.DPR
has db xref: Geonames:T.PAN
has db xref: Geonames:T.PANS
has db xref: SWEETRealm:Depression
has db xref: TGN:21454
has db xref: TGN:21497
has db xref: TGN:21521
has_related_synonym: barrier basin
has_related_synonym: depression
has_related_synonym: non tidal basin
has_related_synonym: pan
has_related_synonym: pan (geologic)
has_related_synonym: pans
has_related_synonym: tidal basin

Axiom
annotated source: depressed landform
annotated property: definition
annotated target: A landform sunken or depressed below the surrounding area.
has db xref: https://en.wikipedia.org/wiki/Depression_%28geology%29

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: barrier basin
has db xref: USGS:SDTS

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: depression
has db xref: Geonames:feature

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: non tidal basin
has db xref: USGS:SDTS

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: pan
has db xref: Geonames:feature

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: pan
has db xref: Getty:TGN

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: pan (geologic)
has db xref: ADL:FTT

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: pans
has db xref: Geonames:feature

Axiom
annotated source: depressed landform
annotated property: has_related_synonym
annotated target: tidal basin
has db xref: USGS:SDTS

piece of rock
type: Class
equivalent class: Class
  intersection of: mass of solid material
  intersection of: Restriction
    on property: composed primarily of
    some values from: rock
subclass of: mass of solid material
subclass of: Restriction
  on property: composed primarily of
  some values from: rock
definition: A mass of solid material which is composed primarily of rock.
has db xref: FTT:1010
has db xref: FTT:145
has db xref: Geonames:T.RK
has db xref: Geonames:T.RKS
has db xref: TGN:21444

particle of sand
type: Class
subclass of: particle
subclass of: Class
  union of: Restriction
    on property: is part of
    some values from: sand
  union of: Restriction
    on property: derives from part of
    some values from: sand
disjoint with: sand
definition: A particle which 1) is composed primarily of and derived from rock or mineral sources and 2) is or was part of a portion of sand.
has exact synonym: grain of sand
has exact synonym: granule of sand
has exact synonym: sand granule
comment: In general, sand grains are larger than those of silt, but finer than those of gravel.

Axiom
annotated source: particle of sand
annotated property: definition
annotated target: A particle which 1) is composed primarily of and derived from rock or mineral sources and 2) is or was part of a portion of sand.
has db xref: Sand

particle of silt
type: Class
subclass of: particle
subclass of: Class
  union of: Restriction
    on property: is part of
    some values from: silt
  union of: Restriction
    on property: derives from part of
    some values from: silt
definition: A particle which 1) is primarily composed of quartz or feldspar and 2) is or was part of a portion of silt.
has exact synonym: grain of silt
has exact synonym: granule of silt
comment: The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam.

Axiom
annotated source: particle of silt
annotated property: comment
annotated target: The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam.
has db xref: Properties

grain of desert sand
type: Class
equivalent class: Class
  intersection of: particle of sand
  intersection of: Restriction
    on property: is part of
    some values from: desert sand
subclass of: solid astronomical body part
subclass of: particle of sand
subclass of: Restriction
  on property: is part of
  some values from: desert sand

biome
type: Class
equivalent class: Class
  intersection of: ecosystem
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: astronomical body part
subclass of: ecosystem
subclass of: Restriction
  on property: is part of
  some values from: biosphere
subclass of: Restriction
  on property: participates in
  some values from: climactic ecological succession
disjoint with: ecoregion
disjoint with: ecozone
definition: A biome is an ecosystem which is undergoing climactic ecological succession.
has db xref: EcoLexicon:biome
has db xref: LTER:809
has exact synonym: major habitat type
has_related_synonym: EcosytemType
comment: In this definition, there is an assumption that no major perturbations are occurring or have occurred in a time frame affects the successional dynamics of the ecosystem. A "major" perturbation is one which disrupts the community's ability to restore its (near) equilibrium. Usually, pioneer or early secondary successional processes would be in effect in such scenarios.

Axiom
annotated source: biome
annotated property: definition
annotated target: A biome is an ecosystem which is undergoing climactic ecological succession.
has db xref: DOI:10.1186/2041-1480-4-43
has db xref: https://en.wikipedia.org/wiki/Biome

Axiom
annotated source: biome
annotated property: hasDbXref
annotated target: LTER:809
has db xref: https://vocab.lternet.edu/vocab/vocab/index.php

Axiom
annotated source: biome
annotated property: hasExactSynonym
annotated target: major habitat type
has db xref: WWF:Biome

Axiom
annotated source: biome
annotated property: has_related_synonym
annotated target: EcosytemType
has db xref: NASA:earthrealm

terrestrial biome
type: Class
equivalent class: Class
  intersection of: terrestrial ecosystem
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: biome
subclass of: terrestrial ecosystem
definition: A biome which is primarily or completely situated on a landmass.
has db xref: LTER:798
has db xref: SPIRE:Terrestrial
has_related_synonym: terrestrial realm

Axiom
annotated source: terrestrial biome
annotated property: definition
annotated target: A biome which is primarily or completely situated on a landmass.
has db xref: https://en.wikipedia.org/wiki/Biome#Terrestrial_biomes

marine biome
type: Class
subclass of: aquatic biome
subclass of: marine ecosystem
definition: An aquatic biome which is determined by a marine water body.
has db xref: SPIRE:Marine
has_related_synonym: marine realm
in subset: envoPolar
comment: This biome includes open-ocean and unprotected coastal ecosystems, characterized by exposure to wave action, tidal fluctuation, and ocean currents as well as systems that largely resemble these. Water in the marine biome is generally within the salinity range of seawater: 30 to 38 ppt.

Axiom
annotated source: marine biome
annotated property: definition
annotated target: An aquatic biome which is determined by a marine water body.
has db xref: https://orcid.org/0000-0002-4366-3088
has db xref: ISBN:978-0-618-45504-1
has db xref: MA:ma
has db xref: https://en.wikipedia.org/wiki/Ocean

research facility
type: Class
subclass of: human construction
definition: A facility, permanent or temporary, on land, in air, space or water, where scientific research or measurements can be undertaken.

Axiom
annotated source: research facility
annotated property: definition
annotated target: A facility, permanent or temporary, on land, in air, space or water, where scientific research or measurements can be undertaken.
has db xref: MA:ma

submerged bed
type: Class
subclass of: solid astronomical body part
subclass of: solid surface layer
subclass of: surface of an astronomical body
subclass of: Restriction
  on property: is part of
  some values from: depressed landform
subclass of: Restriction
  on property: adjacent to
  some values from: water body
definition: The portion of the ground surface which lies below water.
has broad synonym: BOTTOM
has db xref: EcoLexicon:bed
has db xref: FTT:804
has db xref: SWEETRealm:Bottom
has db xref: https://en.wikipedia.org/wiki/Stream_bed

Axiom
annotated source: submerged bed
annotated property: definition
annotated target: The portion of the ground surface which lies below water.
has db xref: USGS:SDTS

Axiom
annotated source: submerged bed
annotated property: hasBroadSynonym
annotated target: BOTTOM
has db xref: USGS:SDTS

rock
type: Class
subclass of: solid environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000386
disjoint with: mineral material
definition: A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
has db xref: EcoLexicon:rock
has db xref: FTT:1010
has db xref: FTT:145
has db xref: Geonames:T.RK
has db xref: Geonames:T.RKS
has db xref: SWEETRealm:Rock
has db xref: TGN:21444
has db xref: https://en.wikipedia.org/wiki/Rock
comment: From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.

Axiom
annotated source: rock
annotated property: definition
annotated target: A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
has db xref: MA:ma
has db xref: https://en.wikipedia.org/wiki/Rock_(geology)

soil
type: Class
subclass of: environmental material
subclass of: astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: pedosphere
subclass of: Restriction
  on property: has part
  some values from: clay
subclass of: Restriction
  on property: has part
  some values from: silt
subclass of: Restriction
  on property: has part
  some values from: sand
subclass of: Restriction
  on property: has part
  some values from: organic material
subclass of: Restriction
  on property: has part
  some values from: mineral material
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: chemical entity
    intersection of: Restriction
      on property: has role
      some values from: nutrient
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000984
subclass of: Restriction
  on property: has disposition
  some values from: water-holding capacity of soil
definition: An environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, interstitial gases, liquids, and a broad range of resident micro- and macroorganisms.
editor note: The various 'has part' and 'has quality' relations may not hold true for all soils; however, I have yet to find counter examples. Require input from a pedologist or similar. [pbuttigieg]
has broad synonym: regolith
has db xref: LTER:535
has db xref: SPIRE:Soil
has db xref: SWEETRealm:Soil
has db xref: https://en.wikipedia.org/wiki/Soil
in subset: EnvO-Lite-GSC
comment: 'In engineering terms, soil is referred to as regolith, or loose rock material that lies above the 'solid geology'. Soil is commonly referred to as "earth" or "dirt"; technically, the term "dirt" should be restricted to displaced soil.' https://en.wikipedia.org/wiki/Soil " The upper limit of soil is the boundary between soil and air, shallow water, live plants, or plant materials that have not begun to decompose. Areas are not considered to have soil if the surface is permanently covered by water too deep (typically more than 2.5 meters) for the growth of rooted plants. The lower boundary that separates soil from the nonsoil underneath is most difficult to define. Soil consists of horizons near the Earth's surface that, in contrast to the underlying parent material, have been altered by the interactions of climate, relief, and living organisms over time. Commonly, soil grades at its lower boundary to hard rock or to earthy materials virtually devoid of animals, roots, or other marks of biological activity. For purposes of classification, the lower boundary of soil is arbitrarily set at 200 cm." Soil taxonomy, 2nd Ed., quoted in http://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/edu/?cid=nrcs142p2_054280

Axiom
annotated source: soil
annotated property: definition
annotated target: An environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, interstitial gases, liquids, and a broad range of resident micro- and macroorganisms.
has db xref: https://en.wikipedia.org/wiki/Soil

marine water body
type: Class
subclass of: lentic water body
definition: A lentic water body which is composed primarily of marine water.
has exact synonym: body of marine water
has exact synonym: marine waterbody

slope
type: Class
subclass of: landform
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: elevated landform
    union of: depressed landform
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001481
definition: A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
has db xref: EcoLexicon:slope
has db xref: SWEETRealm:Slope
has db xref: https://en.wikipedia.org/wiki/Slope
has_related_synonym: flank
has_related_synonym: side

Axiom
annotated source: slope
annotated property: definition
annotated target: A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
has db xref: MA:ma

air
type: Class
subclass of: gaseous environmental material
subclass of: Restriction
  on property: has part
  some values from: dioxygen
subclass of: Restriction
  on property: has part
  some values from: carbon dioxide
subclass of: Restriction
  on property: has part
  some values from: argon molecular entity
subclass of: Restriction
  on property: has part
  some values from: water vapour
subclass of: Restriction
  on property: composed primarily of
  some values from: dinitrogen
definition: The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
has db xref: EcoLexicon:air
has db xref: LTER:18
has db xref: SWEETRealm:Air
has db xref: https://en.wikipedia.org/wiki/Air
in subset: EnvO-Lite-GSC
in subset: envoPolar

Axiom
annotated source: air
annotated property: definition
annotated target: The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
has db xref: https://en.wikipedia.org/wiki/Air

liquid water
type: Class
subclass of: liquid environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: water
definition: An environmental material primarily composed of dihydrogen oxide in its liquid form.
has broad synonym: water
has db xref: EcoLexicon:water
has db xref: LTER:617
has db xref: https://en.wikipedia.org/wiki/Water

Axiom
annotated source: liquid water
annotated property: definition
annotated target: An environmental material primarily composed of dihydrogen oxide in its liquid form.
has db xref: MA:ma

sediment
type: Class
subclass of: particulate environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000984
definition: Particulate environmental material which is formed as a result of the transport and deposition of particles by flowing liquid.
has db xref: EcoLexicon:sediment
has db xref: EcoLexicon:sedimentation
has db xref: LTER:492
has db xref: LTER:493
has db xref: SWEETRealm:Sediment
has db xref: https://en.wikipedia.org/wiki/Sediment
in subset: EnvO-Lite-GSC
in subset: envoPolar
comment: Sediment is typically deposited on the bed or bottom of a body of water or other liquid.

Axiom
annotated source: sediment
annotated property: definition
annotated target: Particulate environmental material which is formed as a result of the transport and deposition of particles by flowing liquid.
has db xref: https://en.wikipedia.org/wiki/Sediment

dust
type: Class
subclass of: particulate environmental material
subclass of: solid environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001824
definition: Particulate environmental material with diameters less than 500 micrometers.
editor note: Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
has db xref: EcoLexicon:dust
has db xref: SWEETRealm:Dust
has db xref: https://en.wikipedia.org/wiki/Dust
in subset: envoPolar
comment: Dust occurs in and may be deposited from the atmosphere.

Axiom
annotated source: dust
annotated property: definition
annotated target: Particulate environmental material with diameters less than 500 micrometers.
has db xref: https://en.wikipedia.org/wiki/Dust

saline water
type: Class
subclass of: liquid water
subclass of: Restriction
  on property: has increased levels of
  some values from: sodium chloride
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001657
definition: Water which contains a significant concentration of dissolved salts.
has db xref: EcoLexicon:saltwater
has db xref: SWEETRealm:SalineWater
has db xref: SWEETRealm:SaltWater
has db xref: https://en.wikipedia.org/wiki/Saline_water
has exact synonym: salt water
comment: The threshold salt concentration for classifying water as saline varies, but typically begins at about 1,000 to 3,000 parts salt per million parts water or 0.1–0.3% salt by weight.

sedimentary rock
type: Class
subclass of: rock
definition: A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis.
has db xref: EcoLexicon:sedimentary_rock
has db xref: SWEETRealm:SedimentaryRock
has db xref: https://en.wikipedia.org/wiki/Sedimentary_rock
has OBO namespace: ENVO
id: ENVO:00002016

Axiom
annotated source: sedimentary rock
annotated property: definition
annotated target: A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis.
has db xref: https://en.wikipedia.org/wiki/Rock_%28geology%29

aquatic biome
type: Class
subclass of: biome
subclass of: aquatic ecosystem
definition: A biome which is determined by a water body and which has ecological climax communities adapted to life in or on water.
has db xref: LTER:41

wood
type: Class
subclass of: organic material
subclass of: solid environmental material
has db xref: EcoLexicon:wood
has db xref: LTER:637
has db xref: SWEETRealm:Wood
has db xref: https://en.wikipedia.org/wiki/Wood
has OBO namespace: ENVO
id: ENVO:00002040

chemically enriched sediment
type: Class
equivalent class: Class
  intersection of: sediment
  intersection of: Restriction
    on property: has increased levels of
    some values from: chemical entity
subclass of: sediment
subclass of: Restriction
  on property: has increased levels of
  some values from: chemical entity
definition: Sediment which has increased levels of one or more chemical compounds.

contaminated soil
type: Class
subclass of: enriched soil
subclass of: Restriction
  on property: has increased levels of
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: has role
      some values from: Class
        union of: poison
        union of: environmental contaminant
definition: A portion of contaminated soil is a portion of soil with elevated levels of some contaminant.
has OBO namespace: ENVO
id: ENVO:00002116
comment: "contaminant" is more of a disposition - any material entity can be a contaminant in particular circumstances.

sea water
type: Class
equivalent class: Class
  intersection of: saline water
  intersection of: Restriction
    on property: is part of
    some values from: Class
      union of: ocean
      union of: sea
subclass of: saline water
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: ocean
    union of: sea
definition: Water which has physicochemical properties that have been determined by the processes occuring in a sea or ocean.
editor note: When we have more classes representing the various processes which make seawater seawater, we can further axiomatise this class.
has db xref: EcoLexicon:sea_water
has db xref: LTER:701
has db xref: SWEETRealm:SeaWater
has db xref: https://en.wikipedia.org/wiki/Sea_water
has exact synonym: ocean water
has exact synonym: seawater
comment: This definition refers to water that is actually in a sea or ocean. This water may have a wide range of salinity levels.

platinum mine
type: Class
equivalent class: Class
  intersection of: mine
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: material extraction process
      intersection of: Restriction
        on property: has output
        some values from: platinum ore
subclass of: mine
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: material extraction process
    intersection of: Restriction
      on property: has output
      some values from: platinum ore
has OBO namespace: ENVO
id: ENVO:00002167

gold mine
type: Class
equivalent class: Class
  intersection of: mine
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: material extraction process
      intersection of: Restriction
        on property: has output
        some values from: gold ore
subclass of: mine
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: material extraction process
    intersection of: Restriction
      on property: has output
      some values from: gold ore
has db xref: https://en.wikipedia.org/wiki/Gold_mine
has OBO namespace: ENVO
id: ENVO:00002168

coal mine
type: Class
equivalent class: Class
  intersection of: mine
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: material extraction process
      intersection of: Restriction
        on property: has output
        some values from: coal
subclass of: mine
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: material extraction process
    intersection of: Restriction
      on property: has output
      some values from: coal
has db xref: https://en.wikipedia.org/wiki/Coal_mine
has OBO namespace: ENVO
id: ENVO:00002169

hospital
type: Class
subclass of: healthcare facility
definition: A hospital is a building in which health care services are provided by specialized staff and equipment.
has db xref: https://en.wikipedia.org/wiki/Hospital

Axiom
annotated source: hospital
annotated property: definition
annotated target: A hospital is a building in which health care services are provided by specialized staff and equipment.
has db xref: https://en.wikipedia.org/wiki/Hospital

contaminated water
type: Class
equivalent class: Class
  intersection of: liquid water
  intersection of: Restriction
    on property: has increased levels of
    some values from: Class
      intersection of: chemical entity
      intersection of: Restriction
        on property: has role
        some values from: environmental contaminant
subclass of: liquid water
subclass of: Restriction
  on property: has increased levels of
  some values from: Class
    intersection of: chemical entity
    intersection of: Restriction
      on property: has role
      some values from: environmental contaminant
has db xref: EcoLexicon:water_pollution
has db xref: https://en.wikipedia.org/wiki/Contaminated_water
has exact synonym: polluted water
has OBO namespace: ENVO
id: ENVO:00002186

organically enriched sediment
type: Class
equivalent class: Class
  intersection of: chemically enriched sediment
  intersection of: Restriction
    on property: has increased levels of
    some values from: organic molecular entity
subclass of: chemically enriched sediment
subclass of: Restriction
  on property: has increased levels of
  some values from: organic molecular entity
definition: Chemically-enriched sediment which has increased levels of organic compounds.

inorganically enriched sediment
type: Class
equivalent class: Class
  intersection of: chemically enriched sediment
  intersection of: Restriction
    on property: has increased levels of
    some values from: inorganic molecular entity
subclass of: chemically enriched sediment
subclass of: Restriction
  on property: has increased levels of
  some values from: inorganic molecular entity
definition: Chemically-enriched sediment which has increased levels of inorganic compounds.

coal mine waste material
type: Class
subclass of: industrial waste material
subclass of: astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: coal mine
has broad synonym: coal mine waste
has OBO namespace: ENVO
has_related_synonym: coal refuse
id: ENVO:00002206

power plant
type: Class
equivalent class: Class
  intersection of: industrial building
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: realizes
        some values from: kinetic energy
subclass of: industrial building
subclass of: Restriction
  on property: generates
  some values from: energy
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: realizes
      some values from: kinetic energy
definition: A power plant is a building which contains one or more generators which convert mechanical energy into electrical energy through the relative motion between a magnetic field and a conductor. The energy source harnessed to turn the generator varies widely.
has db xref: SWEETRealm:PowerPlant
has db xref: https://en.wikipedia.org/wiki/Power_plant
has exact synonym: generating plant
has exact synonym: generating station
has exact synonym: power station
has exact synonym: powerhouse
has OBO namespace: ENVO
id: ENVO:00002214

Axiom
annotated source: power plant
annotated property: definition
annotated target: A power plant is a building which contains one or more generators which convert mechanical energy into electrical energy through the relative motion between a magnetic field and a conductor. The energy source harnessed to turn the generator varies widely.
has db xref: https://en.wikipedia.org/wiki/Power_station

geothermal power plant
type: Class
equivalent class: Class
  intersection of: power plant
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: realizes
        some values from: geothermal energy
subclass of: power plant
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: realizes
      some values from: geothermal energy
definition: A geothermal power plant is a power plant which uses heat generated by the decay of radioactive isotopes in the Earth's mantle and crust as well as primordial heat left over from the formation of the Earth to drive its generators.
has db xref: SWEETRealm:GeothermalPowerPlant
has db xref: https://en.wikipedia.org/wiki/Geothermal_power_plant
has OBO namespace: ENVO
id: ENVO:00002215

Axiom
annotated source: geothermal power plant
annotated property: definition
annotated target: A geothermal power plant is a power plant which uses heat generated by the decay of radioactive isotopes in the Earth's mantle and crust as well as primordial heat left over from the formation of the Earth to drive its generators.
has db xref: https://en.wikipedia.org/wiki/Earth's_internal_heat_budget
has db xref: https://en.wikipedia.org/wiki/Geothermal_energy

forest soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: located in
    some values from: forested area
subclass of: soil
subclass of: Restriction
  on property: located in
  some values from: forested area
definition: A portion of soil which is found in a forested area.

waste material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has role
    some values from: waste role
subclass of: environmental material
subclass of: Restriction
  on property: has role
  some values from: waste role
definition: A material which is not the desired output of a process and which is typically the input of a process which removes it from its producer (e.g. a disposal process).
editor note: This seems more like a role than a material. Anything can be waste. Thus, a "waste" role or disposition will be created and this class can then be populated by inference: any environmental material which has [role,disposition] waste will be considered a waste material.
has db xref: EcoLexicon:waste
has db xref: SWEETRealm:Waste
has db xref: https://en.wikipedia.org/wiki/Waste
has OBO namespace: ENVO
id: ENVO:00002264

industrial waste material
type: Class
subclass of: waste material
definition: Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products.
editor note: This will become a defined class, with subclasses added through inference based on material having a 'waste role' and being associated with industrial entities.
has broad synonym: industrial waste
has OBO namespace: ENVO
id: ENVO:00002267

Axiom
annotated source: industrial waste material
annotated property: definition
annotated target: Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products.
has db xref: ISBN:978-92-1-161386-5
has db xref: http://stats.oecd.org/glossary/detail.asp

nuclear power plant
type: Class
equivalent class: Class
  intersection of: power plant
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: realizes
        some values from: nuclear energy
subclass of: power plant
subclass of: Restriction
  on property: has part
  some values from: nuclear power reactor
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: realizes
      some values from: nuclear energy
definition: A nuclear power plant is a power plant which uses heat generated by a radioactive decay in a nuclear reactor to convert water into steam in order to drive turbines in electrical generators through pressure.
has db xref: https://en.wikipedia.org/wiki/Nuclear_power_plant
has OBO namespace: ENVO
id: ENVO:00002271

Axiom
annotated source: nuclear power plant
annotated property: definition
annotated target: A nuclear power plant is a power plant which uses heat generated by a radioactive decay in a nuclear reactor to convert water into steam in order to drive turbines in electrical generators through pressure.
has db xref: https://en.wikipedia.org/wiki/Nuclear_power_plant

air conditioning unit
type: Class
subclass of: manufactured product
definition: A manufactuered product which is capable of removing heat and controlling the humidity of the air within a site.
has broad synonym: A/C
has broad synonym: A/C unit
has broad synonym: air conditioner

Axiom
annotated source: air conditioning unit
annotated property: definition
annotated target: A manufactuered product which is capable of removing heat and controlling the humidity of the air within a site.
definition: Air conditioning

clay
type: Class
subclass of: particulate environmental material
subclass of: Restriction
  on property: has part
  some values from: particle of clay
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001759
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000984
disjoint with: silt
definition: Particulate environmental material which 1) is composed primarily of clay particles, with only minor proportions of other materials, 2) demonstrates plasticity when wet, and 3) is capable of hardening when dried or fired.
editor note: Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
has db xref: EcoLexicon:clay
has db xref: SWEETRealm:Clay
comment: This definition is intentionally ambiguous to support the multiple thresholds set by different authorities.The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam. Similar mixtures with greater than 40% clay are often considered clay soils.

Axiom
annotated source: clay
annotated property: definition
annotated target: Particulate environmental material which 1) is composed primarily of clay particles, with only minor proportions of other materials, 2) demonstrates plasticity when wet, and 3) is capable of hardening when dried or fired.
has db xref: https://en.wikipedia.org/wiki/Clay

Axiom
annotated source: clay
annotated property: comment
annotated target: This definition is intentionally ambiguous to support the multiple thresholds set by different authorities.The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam. Similar mixtures with greater than 40% clay are often considered clay soils.
has db xref: Clay

animal house
type: Class
subclass of: house
definition: A house used for sheltering non-human animals.
comment: While humans are animals, this class does not refer to human houses.

manufactured product
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: output of
    some values from: manufacturing process
subclass of: material entity
subclass of: Restriction
  on property: output of
  some values from: manufacturing process
definition: A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
has exact synonym: manufactured good

Axiom
annotated source: manufactured product
annotated property: definition
annotated target: A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
comment: https://en.wikipedia.org/wiki/Manufactured_product

enriched soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: has increased levels of
    some values from: material entity
subclass of: soil
subclass of: Restriction
  on property: has increased levels of
  some values from: material entity
definition: A portion of enriched soil is a portion of soil with elevated levels of some material entity.
comment: This could be demoted to an inferred class if issues with double inheritance arise.

industrial building
type: Class
equivalent class: Class
  intersection of: building
  intersection of: Restriction
    on property: participates in
    some values from: usage of an environment for industry
subclass of: building
subclass of: Restriction
  on property: participates in
  some values from: usage of an environment for industry
definition: An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered.
comment: It's possible that this will become an inferred class in the future. The United Nations' International Standard Industrial Classification should be referred to when expanding this branch. ISIC can also be used to identify processes. See http://unstats.un.org/unsd/cr/registry/regcst.asp?Cl=27&Lg=1.

Axiom
annotated source: industrial building
annotated property: definition
annotated target: An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered.
has db xref: https://en.wikipedia.org/wiki/Industry

brewery
type: Class
subclass of: industrial building
definition: A brewery is a building in which alcoholic beverages are produced by brewing, that is, steeping a starch source (commonly cereal grains) in water and fermenting the resulting sweet liquid with yeast. At times, the products are also sold from the brewery.
has OBO namespace: ENVO
id: ENVO:00003885

Axiom
annotated source: brewery
annotated property: definition
annotated target: A brewery is a building in which alcoholic beverages are produced by brewing, that is, steeping a starch source (commonly cereal grains) in water and fermenting the resulting sweet liquid with yeast. At times, the products are also sold from the brewery.
has db xref: https://en.wikipedia.org/wiki/Brewery
has db xref: https://en.wikipedia.org/wiki/Brewing

research station
type: Class
subclass of: research facility
definition: A building or collection of co-located buildings constructed for the purpose of undertaking scientific research.

Axiom
annotated source: research station
annotated property: definition
annotated target: A building or collection of co-located buildings constructed for the purpose of undertaking scientific research.
has db xref: MA:ma
has db xref: https://en.wikipedia.org/wiki/Research_station

warehouse
type: Class
subclass of: commercial building
definition: A warehouse is a building which is used for the storage of goods.

Axiom
annotated source: warehouse
annotated property: definition
annotated target: A warehouse is a building which is used for the storage of goods.
has db xref: https://en.wikipedia.org/wiki/Warehouse

air filter
type: Class
subclass of: manufactured product
subclass of: Restriction
  on property: is part of
  some values from: air conditioning unit
definition: An air filter is a device that removes some substance from air.
has db xref: https://en.wikipedia.org/wiki/Air_filter
has OBO namespace: ENVO
id: ENVO:00003968
comment: This is a general definition derived from the definitions for particulate, chemical, and other air filters. Subclasses should be created if needed.

Axiom
annotated source: air filter
annotated property: definition
annotated target: An air filter is a device that removes some substance from air.
created by: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Air_filter

dry soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001824
subclass of: soil
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001824
definition: Soil which has little to no water content and in which minerals and other soluble chemical entities have either bonded or become adsorbed to sold particles due to insufficient water availability.

farm soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Class
    union of: rangeland biome
    union of: Restriction
      on property: is part of
      some values from: cropland biome
subclass of: soil
definition: A portion of soil which is part of a cropland or a rangeland biome.

grassland soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: located in
    some values from: grassland area
subclass of: soil
subclass of: Restriction
  on property: located in
  some values from: grassland area
definition: A portion of soil which is found in a grassland.

field soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: is part of
    some values from: agricultural field
subclass of: soil
subclass of: Restriction
  on property: is part of
  some values from: agricultural field
definition: Soil which is part of an agricultural field.

upland soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: is part of
    some values from: elevated landform
subclass of: soil
subclass of: Restriction
  on property: is part of
  some values from: elevated landform
definition: Soil which is part of some elevated land.

Axiom
annotated source: upland soil
annotated property: definition
annotated target: Soil which is part of some elevated land.
has db xref: upland

desert sand
type: Class
equivalent class: Class
  intersection of: sand
  intersection of: Restriction
    on property: is part of
    some values from: desert
subclass of: sand
subclass of: astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: desert
definition: Sand which is part of a desert.

animal habitation
type: Class
subclass of: construction
definition: The dwelling of an animal or group of similar animals.
has narrow synonym: den
has narrow synonym: nest
comment: This class represents habitations of non-human animals. This distinction may be removed in future releases.

Axiom
annotated source: animal habitation
annotated property: definition
annotated target: The dwelling of an animal or group of similar animals.
has db xref: MA:ma

nest of bird
type: Class
subclass of: animal habitation
definition: A bird nest is the spot in which a bird lays and incubates its eggs and raises its young.
has exact synonym: bird nest
has exact synonym: bird's nest
has narrow synonym: eyrie
has OBO namespace: ENVO
id: ENVO:00005805

Axiom
annotated source: nest of bird
annotated property: definition
annotated target: A bird nest is the spot in which a bird lays and incubates its eggs and raises its young.
has db xref: https://en.wikipedia.org/wiki/Bird_nest

environmental material
type: Class
subclass of: material entity
subclass of: Restriction
  on property: composed primarily of
  some values from: macromolecule
definition: A material entity which other material entities in an environmental system are primarily or partially composed of.
has exact synonym: portion of environmental material
comment: Everything under this parent must be a mass noun (i.e. not countable). All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water".
comment: Instances of this class are portions of environmental materials, such as seawater in bucket, a water parcel in the photic zone of a lake, or the concrete that composes a building part. Instances of these portions may have fiat or non-fiat boundaries. For example, a water parcel has not physical boundaries, while the seawater in a bucket is bounded by the internal surfaces of the bucket.

Axiom
annotated source: environmental material
annotated property: definition
annotated target: A material entity which other material entities in an environmental system are primarily or partially composed of.
has db xref: niches.html
has db xref: https://dx.doi.org/10.1186/2041-1480-4-43
has db xref: Material

surface layer
type: Class
subclass of: interface layer
definition: A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
has db xref: EcoLexicon:surface
has db xref: http://sweetontology.net/reprSpaceGeometry/Surface
has db xref: https://en.wikipedia.org/wiki/Surface
comment: This class is distinct from a geometric surface, which is two-dimensional. The idea of "uppermost" may be problematic. Further, the definition of layer (the superclass of surface in rev 133) references surface. This may be another issue. Perhaps this can be made into an inferred class using 'bounding layer of' some material entity, note that 'bounding layer' implies containment, which may not be valid here.

Axiom
annotated source: surface layer
annotated property: definition
annotated target: A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
has db xref: URL:http://www.merriam-webster.com/dictionary/surface

aerosol
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has part
  some values from: gaseous environmental material
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: particulate environmental material
    intersection of: Restriction
      on property: surrounded by
      some values from: gaseous environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001332
definition: Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
has db xref: EcoLexicon:aerosol
has db xref: SWEETRealm:Aerosol
in subset: envoAtmo
comment: Should connect to PATO as "quality of an aerosol"

Axiom
annotated source: aerosol
annotated property: definition
annotated target: Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
has db xref: https://en.wikipedia.org/wiki/Aerosol

anthropogenic environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: output of
    some values from: Class
      union of: anthropisation
      union of: manufacturing process
subclass of: environmental material
subclass of: Restriction
  on property: output of
  some values from: Class
    union of: anthropisation
    union of: manufacturing process
definition: Anthropogenic material in or on which organisms may live.
has OBO namespace: ENVO
id: ENVO:0010001

Axiom
annotated source: anthropogenic environmental material
annotated property: definition
annotated target: Anthropogenic material in or on which organisms may live.
has db xref: MA:ma

upwelling
type: Class
subclass of: ocean current
definition: MERGED DEFINITION: TARGET DEFINITION: An oceanographic feature that involves wind-driven motion of dense, cooler, and usually nutrient-rich water towards the ocean surface, replacing the warmer, usually nutrient-deplete surface water. -------------------- SOURCE DEFINITION: A marine upwelling is a net flow of marine water to the surface of the water column from deeper regions. This is often a result of surface water displacement off continental coasts by wind action. Localised upwellings may also occur along divergent fronts around eddies and along some of the major oceanographic features. Deeper waters often have higher nutrient content; consequently blooms of primary producers, such as planktonic algae, are generally observed around upwelling zones.
has alternative id: ENVO:01000063
has db xref: EcoLexicon:upwell
has db xref: EcoLexicon:upwelling
has db xref: SWEETRealm:Upwelling
has db xref: https://en.wikipedia.org/wiki/Upwelling
has exact synonym: marine upwelling
comment: This term is specific to marine upwellings.

Axiom
annotated source: upwelling
annotated property: definition
annotated target: MERGED DEFINITION: TARGET DEFINITION: An oceanographic feature that involves wind-driven motion of dense, cooler, and usually nutrient-rich water towards the ocean surface, replacing the warmer, usually nutrient-deplete surface water. -------------------- SOURCE DEFINITION: A marine upwelling is a net flow of marine water to the surface of the water column from deeper regions. This is often a result of surface water displacement off continental coasts by wind action. Localised upwellings may also occur along divergent fronts around eddies and along some of the major oceanographic features. Deeper waters often have higher nutrient content; consequently blooms of primary producers, such as planktonic algae, are generally observed around upwelling zones.
has db xref: https://en.wikipedia.org/wiki/Upwelling

silt
type: Class
subclass of: particulate environmental material
subclass of: Restriction
  on property: has part
  some values from: particle of silt
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0000150
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000984
disjoint with: sand
definition: Particulate environmental material which is primarily composed of silt particles.
editor note: Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
has db xref: EcoLexicon:silt
has db xref: SWEETRealm:Silt
has db xref: https://en.wikipedia.org/wiki/Silt
comment: This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider this soil material that contains 80% or more silt and less than 12% clay. In the Udden-Wentworth scale (due to Krumbein), silt particles range between 0.0039 to 0.0625 mm, larger than clay but smaller than sand particles. ISO 14688 grades silts between 0.002 mm and 0.063 mm. In actuality, silt is chemically distinct from clay, and unlike clay, grains of silt are approximately the same size in all dimensions; furthermore, their size ranges overlap. Clays are formed from thin plate-shaped particles held together by electrostatic forces, so present a cohesion. According to the U.S. Department of Agriculture Soil Texture Classification system, the sand-silt distinction is made at the 0.05 mm particle size. The USDA system has been adopted by the Food and Agriculture Organization (FAO). In the Unified Soil Classification System (USCS) and the AASHTO Soil Classification system, the sand-silt distinction is made at the 0.075 mm particle size (i.e., material passing the #200 sieve). Silts and clays are distinguished mechanically by their plasticity.

Axiom
annotated source: silt
annotated property: definition
annotated target: Particulate environmental material which is primarily composed of silt particles.
has db xref: Silt

Axiom
annotated source: silt
annotated property: comment
annotated target: This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider this soil material that contains 80% or more silt and less than 12% clay. In the Udden-Wentworth scale (due to Krumbein), silt particles range between 0.0039 to 0.0625 mm, larger than clay but smaller than sand particles. ISO 14688 grades silts between 0.002 mm and 0.063 mm. In actuality, silt is chemically distinct from clay, and unlike clay, grains of silt are approximately the same size in all dimensions; furthermore, their size ranges overlap. Clays are formed from thin plate-shaped particles held together by electrostatic forces, so present a cohesion. According to the U.S. Department of Agriculture Soil Texture Classification system, the sand-silt distinction is made at the 0.05 mm particle size. The USDA system has been adopted by the Food and Agriculture Organization (FAO). In the Unified Soil Classification System (USCS) and the AASHTO Soil Classification system, the sand-silt distinction is made at the 0.075 mm particle size (i.e., material passing the #200 sieve). Silts and clays are distinguished mechanically by their plasticity.
has db xref: Silt
has db xref: index.html

sand
type: Class
subclass of: particulate environmental material
subclass of: Restriction
  on property: has part
  some values from: particle of sand
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0000150
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0000984
subclass of: Restriction
  on property: bearer of
  some values from: PATO_0001759
subclass of: Restriction
  on property: derives from
  some values from: Class
    union of: rock
    union of: OBI_0100026
    union of: UBERON_0006612
definition: Particulate environmental material which is composed primarily of particles of sand with only minor proportions of other substances.
editor note: Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
has db xref: EcoLexicon:sand
has db xref: LTER:484
has db xref: SWEETRealm:Sand
has db xref: https://en.wikipedia.org/wiki/Sand
comment: This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider as sands soil material that contains 85% or more sand; the percentage of silt plus 1.5 times the percentage of clay does not exceed 15. coarse sand (sable grossier) 25% or more very coarse and coarse sand, and less than 50% any other one grade of sand.

Axiom
annotated source: sand
annotated property: definition
annotated target: Particulate environmental material which is composed primarily of particles of sand with only minor proportions of other substances.
has db xref: https://en.wikipedia.org/wiki/Sand

Axiom
annotated source: sand
annotated property: comment
annotated target: This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider as sands soil material that contains 85% or more sand; the percentage of silt plus 1.5 times the percentage of clay does not exceed 15. coarse sand (sable grossier) 25% or more very coarse and coarse sand, and less than 50% any other one grade of sand.
has db xref: https://sis.agr.gc.ca/cansis/glossary/t/index.html

estuarine biome
type: Class
subclass of: marine biome
definition: Expressions of the estuarine biome occur at wide lower courses of a rivers where they flow into a sea. Estuaries experience tidal flows and their water is a changing mixture of fresh and salt.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:17:06Z
has db xref: SPIRE:Estuarine

Axiom
annotated source: estuarine biome
annotated property: definition
annotated target: Expressions of the estuarine biome occur at wide lower courses of a rivers where they flow into a sea. Estuaries experience tidal flows and their water is a changing mixture of fresh and salt.
has db xref: ISBN:978-92-1-161386-5
has db xref: ORCID:0000-0002-4366-3088

marine salt marsh biome
type: Class
subclass of: marine biome
definition: The marine salt marsh biome comprises marshes that are transitional intertidals between land and salty or brackish marine water (e.g.: sloughs, bays, estuaries). It is dominated by halophytic (salt tolerant) herbaceous plants. The daily tidal surges bring in nutrients, which tend to settle in roots of the plants within the salt marsh. The natural chemical activity of salty (or brackish) water and the tendency of algae to bloom in the shallow unshaded water also allow for great biodiversity.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:17:06Z
has OBO namespace: ENVO
id: ENVO:01000022

Axiom
annotated source: marine salt marsh biome
annotated property: definition
annotated target: The marine salt marsh biome comprises marshes that are transitional intertidals between land and salty or brackish marine water (e.g.: sloughs, bays, estuaries). It is dominated by halophytic (salt tolerant) herbaceous plants. The daily tidal surges bring in nutrients, which tend to settle in roots of the plants within the salt marsh. The natural chemical activity of salty (or brackish) water and the tendency of algae to bloom in the shallow unshaded water also allow for great biodiversity.
has db xref: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Salt_marsh

marginal sea biome
type: Class
subclass of: marine biome
definition: The marginal sea biome comprises parts of an ocean partially enclosed by land such as islands, archipelagos, or peninsulas. Unlike mediterranean seas, marginal seas have ocean currents caused by ocean winds. Many marginal seas are enclosed by island arcs that were formed from the subduction of one oceanic plate beneath another.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:23:23Z

Axiom
annotated source: marginal sea biome
annotated property: definition
annotated target: The marginal sea biome comprises parts of an ocean partially enclosed by land such as islands, archipelagos, or peninsulas. Unlike mediterranean seas, marginal seas have ocean currents caused by ocean winds. Many marginal seas are enclosed by island arcs that were formed from the subduction of one oceanic plate beneath another.
has db xref: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Marginal_sea

ocean biome
type: Class
subclass of: marine biome
definition: A marine biome which is determined by an ocean.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-15T11:23:23Z
in subset: envoPolar
comment: Ocean biomes are determined by major bodies of saline water, principal components of the hydrosphere. Approximately 71% of the Earth's surface is covered by ocean, a continuous body of water that is customarily divided into several principal oceans and smaller seas. More than half of this area is over 3,000 metres (9,800 ft) deep. Average oceanic salinity is around 35 parts per thousand (ppt) (3.5%), and nearly all seawater has a salinity in the range of 30 to 38 ppt.

Axiom
annotated source: ocean biome
annotated property: definition
annotated target: A marine biome which is determined by an ocean.
has db xref: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Ocean

particulate environmental material
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has part
  some values from: particle
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001759
definition: An environmental material which is composed primarily of particles.
editor note: Do not oversimplify this branch with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
has broad synonym: particulate matter
in subset: envoAtmo
in subset: envoPolar

planktonic material
type: Class
subclass of: organic material
definition: A portion of planktonic material is a portion of environmental material primarily composed of plankton.
editor note: See Issue #251. Awaiting class creation in PCO to attempt logical definitions.
in subset: envoPolar

marine current
type: Class
subclass of: water current
subclass of: Restriction
  on property: composed primarily of
  some values from: sea water
definition: A water current which is maintained by a continuous, directed movement of marine water, generated by forces caused by breaking waves, wind, Coriolis force, temperature and salinity differences, and tides caused by the gravitational pull of astronomical bodies. Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-16T12:16:11Z
has db xref: EcoLexicon:marine_current
in subset: envoPolar

Axiom
annotated source: marine current
annotated property: definition
annotated target: A water current which is maintained by a continuous, directed movement of marine water, generated by forces caused by breaking waves, wind, Coriolis force, temperature and salinity differences, and tides caused by the gravitational pull of astronomical bodies. Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength.
has db xref: ORCID:0000-0002-4366-3088
has db xref: https://en.wikipedia.org/wiki/Ocean_current

organic material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: biomacromolecule
subclass of: environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: biomacromolecule
definition: Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
created by: ORCID:0000-0002-4366-3088
creation date: 2010-03-20T08:40:04Z
has db xref: EcoLexicon:organic_material
has exact synonym: biomass

Axiom
annotated source: organic material
annotated property: definition
annotated target: Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
has db xref: ISBN:978-0-618-45504-1
has db xref: ORCID:0000-0002-4366-3088

forest biome
type: Class
equivalent class: Class
  intersection of: forest ecosystem
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: terrestrial biome
subclass of: forest ecosystem
definition: A forest ecosystem which is undergoing climactic ecological succession.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:26:46Z
has db xref: LTER:212
has db xref: SPIRE:Forest

woodland biome
type: Class
subclass of: terrestrial biome
subclass of: Restriction
  on property: has part
  some values from: woodland area
definition: A woodland biome is a terrestrial biome which includes, across its entire spatial extent, woody plants spaced sufficiently far apart to allow light penetration to support communities of herbaceous plants or shrubs living closer to the woodland floor.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:26:46Z
comment: Preliminary definition.

shrubland biome
type: Class
subclass of: terrestrial biome
definition: A shrubland biome is a terrestrial biome which includes, across its entire spatial extent, dense groups of shrubs.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:26:46Z
comment: Preliminary definition.

grassland biome
type: Class
equivalent class: Class
  intersection of: grassland ecosystem
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: terrestrial biome
subclass of: grassland ecosystem
definition: A grassland ecosystem in which dominant ecological communities have reached their climax successional state.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:26:46Z
has db xref: SPIRE:Savannah_or_grassland

savanna biome
type: Class
subclass of: woodland biome
definition: A woodland biome which has seasonal water availability and includes trees spaced sufficiently far apart to allow an unbroken layer of grass, sedge (Cyperaceae) or rush (Juncaceae) communities to live.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:26:46Z
has db xref: SPIRE:Savannah_or_grassland

desert biome
type: Class
equivalent class: Class
  intersection of: desert ecosystem
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: biome
subclass of: desert ecosystem
subclass of: Restriction
  on property: overlaps
  some values from: desert area
definition: A desert ecosystem which is undergoing climactic ecological succession.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:26:46Z
has db xref: SPIRE:Desert_or_dune
in subset: wwfBiome

subtropical desert biome
type: Class
subclass of: desert biome
subclass of: subtropical biome
definition: A subtropical desert biome is a desert biome which has communities adapted to temperatures above a monthly average of 18 degrees Celsius, high daily temperature ranges of approximately 20 degrees Celsius, high insolation (but lower than that of a tropical desert biome), inhibited cloud formation, and very low precipitation. Subtropical desert biomes located near coasts with cold upwellings may have cooler temperatures and reduced insolution due to fog.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:28:08Z
comment: Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.

Axiom
annotated source: subtropical desert biome
annotated property: definition
annotated target: A subtropical desert biome is a desert biome which has communities adapted to temperatures above a monthly average of 18 degrees Celsius, high daily temperature ranges of approximately 20 degrees Celsius, high insolation (but lower than that of a tropical desert biome), inhibited cloud formation, and very low precipitation. Subtropical desert biomes located near coasts with cold upwellings may have cooler temperatures and reduced insolution due to fog.
has db xref: WWW:http://www.earthonlinemedia.com/ebooks/tpe_3e/title_page.html
has db xref: https://en.wikipedia.org/wiki/Subtropical#Semi-desert.2Fdesert_climate

temperate savanna biome
type: Class
subclass of: savanna biome
subclass of: temperate biome
definition: A savanna biome which is subject to temperate climate patterns.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:28:51Z
has broad synonym: prairie biome
comment: Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.

subtropical grassland biome
type: Class
equivalent class: Class
  intersection of: subtropical grassland
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: grassland biome
subclass of: subtropical grassland
subclass of: subtropical biome
definition: A subtropical grassland in which dominant ecological communities have reached their climax successional state.
creation date: 2013-04-07T14:29:48Z
in subset: wwfBiome

tropical grassland biome
type: Class
equivalent class: Class
  intersection of: tropical grassland
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: grassland biome
subclass of: tropical grassland
subclass of: tropical biome
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:29:48Z
in subset: wwfBiome
comment: Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.

temperate grassland biome
type: Class
equivalent class: Class
  intersection of: temperate grassland
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: grassland biome
subclass of: temperate grassland
subclass of: temperate biome
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:29:48Z
has broad synonym: prairie biome
comment: Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.

coniferous forest biome
type: Class
equivalent class: Class
  intersection of: needleleaf forest
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: forest biome
subclass of: needleleaf forest
definition: A coniferous forest biome is a forest biome which contains densely packed populations or communities of coniferous trees, strongly limiting light penetration to the forest floor.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:31:01Z
has OBO namespace: ENVO
id: ENVO:01000196
comment: Preliminary definition.

broadleaf forest biome
type: Class
equivalent class: Class
  intersection of: broadleaf forest
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: forest biome
subclass of: broadleaf forest
definition: A broadleaf forest ecosystem which is undergoing climactic ecological succession.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:31:01Z

mixed forest biome
type: Class
equivalent class: Class
  intersection of: mixed forest
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: forest biome
subclass of: mixed forest
definition: A mixed forest in which dominant ecological communities have reached their climax successional state.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:31:01Z
in subset: wwfBiome

tropical broadleaf forest biome
type: Class
equivalent class: Class
  intersection of: tropical broadleaf forest
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: broadleaf forest biome
subclass of: tropical broadleaf forest
subclass of: tropical biome
definition: A tropical broadleaf forest in which dominant ecological communities have reached their climax successional state.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:32:28Z

temperate broadleaf forest biome
type: Class
equivalent class: Class
  intersection of: temperate broadleaf forest
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: broadleaf forest biome
subclass of: temperate broadleaf forest
subclass of: temperate biome
definition: A broadleaf forest which is subject to temperate climate patterns.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:32:28Z
in subset: wwfBiome

environmental condition
type: Class
subclass of: PATO_0001018
IAO_0000114: IAO_0000121
definition: An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:35:18Z
in subset: envoPolar
comment: A condition defines a restricted range of a given quality or combination of qualities. If an environment class, E, has_condition C, then all qualities listed in C are restricted to the ranges defined in C in E. This is not intended as a logical conditional.

Axiom
annotated source: environmental condition
annotated property: definition
annotated target: An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
has db xref: DOI:10.1186/2041-1480-4-43

tropical
type: Class
subclass of: environmental condition
definition: A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:36:47Z
has db xref: EcoLexicon:the_tropics
has db xref: SPIRE:Tropical

Axiom
annotated source: tropical
annotated property: definition
annotated target: A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius.
has db xref: https://en.wikipedia.org/wiki/Tropical

subtropical
type: Class
subclass of: environmental condition
definition: A subtropical condition is an environmental condition in which an envrionmental system receives more solar irradiance than those with temperate conditions, but less than those with tropical conditions. At low elevations, this typically results in eight months of the year having average temperatures greater than or equal to 10 degrees Celsius with the coldest monthly temperature averaging between 2 and 13 degrees Celsius.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:36:47Z
comment: As with most other climatic zones and conditions, multiple classification schemes have somehat different definitions and criteria. To quote from https://en.wikipedia.org/wiki/ "Several methods have been used to define the subtropical climate. In the Trewartha climate classification, a subtropical region should have at least eight months with a mean temperature of 10 °C (50.0 °F) or above. German climatologists Carl Troll and Karlheinz Paffen defined Warm temperate zones as plain and hilly lands having an average temperature of the coldest month between 2 °C (35.6 °F) and 13 °C (55.4 °F) in the Northern Hemisphere and between 6 °C (42.8 °F) and 13 °C (55.4 °F) in the Southern Hemisphere, excluding oceanic and continental climates. According to the Troll-Paffen climate classification, there generally exists one large subtropical zone named the warm-temperate subtropical zone,[4] which is subdivided into seven smaller areas.[5] According to the E. Neef climate classification, the subtropical zone is divided into two parts: Rainy winters of the west sides and Eastern subtropical climate.[6] According to the Wilhelm Lauer & Peter Frankenberg climate classification, the subtropical zone is divided into three parts: high-continental, continental, and maritime.[7] According to the Siegmund/Frankenberg climate classification, subtropical is one of six climate zones in the world.[8]"

temperate
type: Class
subclass of: environmental condition
definition: A temperate condition is an environmental condition in which an environmental system receives less solar irradiance than those with subpolar conditions, but greater than those with subtropical conditions.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:36:47Z
has db xref: SPIRE:Temperate
has exact synonym: tepid climate
comment: This class' definition is less satisfactory than the other latitudinal conditoins.

Axiom
annotated source: temperate
annotated property: definition
annotated target: A temperate condition is an environmental condition in which an environmental system receives less solar irradiance than those with subpolar conditions, but greater than those with subtropical conditions.
has db xref: https://en.wikipedia.org/wiki/Temperate_climate

Axiom
annotated source: temperate
annotated property: hasExactSynonym
annotated target: tepid climate
has db xref: https://en.wikipedia.org/wiki/Temperate_climate

temperate coniferous forest biome
type: Class
subclass of: coniferous forest biome
subclass of: temperate forest
subclass of: temperate biome
definition: A coniferous forest biome which is subject to temperate climate patterns.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:39:14Z
in subset: wwfBiome
comment: Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.

temperate mixed forest biome
type: Class
equivalent class: Class
  intersection of: temperate mixed forest
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: mixed forest biome
subclass of: temperate mixed forest
subclass of: temperate biome
definition: A temperate mixed forest in which dominant ecological communities have reached their climax successional state.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:39:30Z
in subset: wwfBiome

temperate shrubland biome
type: Class
subclass of: shrubland biome
subclass of: temperate biome
definition: A shrubland biome which is subject to temperate climate patterns.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:40:32Z
has broad synonym: prairie biome
comment: Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.

montane shrubland biome
type: Class
subclass of: shrubland biome
subclass of: montane biome
definition: A montane shrubland biome is a shrubland biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:40:32Z
in subset: wwfBiome
comment: Preliminary definition.

anthropogenic terrestrial biome
type: Class
equivalent class: Class
  intersection of: terrestrial biome
  intersection of: Restriction
    on property: formed as result of
    some values from: anthropisation
subclass of: terrestrial biome
subclass of: anthropised ecosystem
definition: An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T14:45:22Z
has exact synonym: anthrome
has exact synonym: human biome
comment: Preliminary definition.

Axiom
annotated source: anthropogenic terrestrial biome
annotated property: definition
annotated target: An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
has db xref: http://www.eoearth.org/view/article/150128/

temperate woodland biome
type: Class
subclass of: woodland biome
subclass of: temperate biome
definition: A woodland biome which is subject to temperate climate patterns.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-07T15:01:04Z
comment: Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.

arid
type: Class
subclass of: environmental condition
definition: An environmental condition in which annual precipitation is less than half of annual potential evapotranspiration.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-04-24T13:28:18Z
has db xref: EcoLexicon:aridity
in subset: envoPolar

polar
type: Class
subclass of: environmental condition
definition: A polar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area, resulting in colder climatic conditions.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-05-08T07:49:36Z
has db xref: SPIRE:Polar
has db xref: SWEETRealm:Polarization
has_related_synonym: frigid
in subset: envoPolar
comment: On Earth, polar conditions are such that every month has average temperature lower than 10 degrees Celsius. Note that this class refers to a climatic rather than a positional condition.

Axiom
annotated source: polar
annotated property: definition
annotated target: A polar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area, resulting in colder climatic conditions.
has db xref: https://en.wikipedia.org/wiki/Polar_climate

Axiom
annotated source: polar
annotated property: has_related_synonym
annotated target: frigid
has db xref: https://en.wikipedia.org/wiki/Polar_climate

desert scrubland
type: Class
equivalent class: Class
  intersection of: scrubland area
  intersection of: Restriction
    on property: has quality
    some values from: arid
  intersection of: Restriction
    on property: overlaps
    some values from: desert area
subclass of: scrubland area
subclass of: Restriction
  on property: has quality
  some values from: arid
subclass of: Restriction
  on property: overlaps
  some values from: desert area
definition: A scrubland which is located in a desert.
creation date: 2013-06-06T15:02:30Z
has exact synonym: desert scrub

Axiom
annotated source: desert scrubland
annotated property: definition
annotated target: A scrubland which is located in a desert.
has db xref: ORCID:0000-0001-8743-9574

Axiom
annotated source: desert scrubland
annotated property: hasExactSynonym
annotated target: desert scrub
has db xref: ORCID:0000-0001-8743-9574

cropland biome
type: Class
equivalent class: Class
  intersection of: cropland ecosystem
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: anthropogenic terrestrial biome
subclass of: cropland ecosystem
definition: A cropland ecosystem which is undergoing climactic ecological succession.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-06-14T11:45:47Z

Axiom
annotated source: cropland biome
annotated property: definition
annotated target: A cropland ecosystem which is undergoing climactic ecological succession.
has db xref: j.1466-8238.2010.00540.x
has db xref: http://dx.doi.org/10.1890/070062

village biome
type: Class
equivalent class: Class
  intersection of: village
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: biome
subclass of: village
definition: A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-06-14T11:45:47Z
comment: Villages are also described as agricultural settlements with greater than 100 persons per square kilometre; however, no upper limit is defined.

Axiom
annotated source: village biome
annotated property: definition
annotated target: A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.
has db xref: DOI:10.1111/j.1466-8238.2010.00540.x
has db xref: DOI:10.1890/070062

rangeland biome
type: Class
subclass of: anthropogenic terrestrial biome
definition: A rangeland biome is an anthropogenic terrestrial biome which is primarily used for the rearing and grazing of livestock.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-06-14T11:45:47Z

Axiom
annotated source: rangeland biome
annotated property: definition
annotated target: A rangeland biome is an anthropogenic terrestrial biome which is primarily used for the rearing and grazing of livestock.
has db xref: DOI:10.1111/j.1466-8238.2010.00540.x
has db xref: DOI:10.1890/070062

dense settlement biome
type: Class
equivalent class: Class
  intersection of: dense settlement
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: biome
subclass of: dense settlement
definition: A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-06-14T11:45:47Z
id: ENVO:01000248

Axiom
annotated source: dense settlement biome
annotated property: definition
annotated target: A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.
has db xref: DOI:10.1111/j.1466-8238.2010.00540.x
has db xref: DOI:10.1890/070062

subpolar coniferous forest biome
type: Class
subclass of: coniferous forest biome
subclass of: subpolar biome
definition: A coniferous forest biome which includes communities adapted to subpolar conditions.
creation date: 2013-09-04T06:41:53Z
has db xref: EcoLexicon:taiga
has db xref: LTER:72
has db xref: SPIRE:Taiga
has narrow synonym: boreal forest
has narrow synonym: taiga
in subset: wwfBiome

subpolar
type: Class
subclass of: environmental condition
definition: A subpolar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area and is surrounded by large land masses. This results in very cold winters with temperatures potentially falling to around -40 degrees Celsius and summers which last no more than 3 months of the year with a 24-hour average temperature of at least 10 degrees Celsius.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-09-04T07:08:34Z
has exact synonym: boreal
has exact synonym: subarctic
in subset: envoPolar
comment: Note that this class refers to a climatic rather than a positional condition.

Axiom
annotated source: subpolar
annotated property: definition
annotated target: A subpolar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area and is surrounded by large land masses. This results in very cold winters with temperatures potentially falling to around -40 degrees Celsius and summers which last no more than 3 months of the year with a 24-hour average temperature of at least 10 degrees Celsius.
has db xref: https://en.wikipedia.org/wiki/Subarctic_climate

Axiom
annotated source: subpolar
annotated property: hasExactSynonym
annotated target: boreal
has db xref: https://en.wikipedia.org/wiki/Subarctic_climate

Axiom
annotated source: subpolar
annotated property: hasExactSynonym
annotated target: subarctic
has db xref: https://en.wikipedia.org/wiki/Subarctic_climate

environmental system
type: Class
subclass of: RO_0002577
definition: A system which has the disposition to environ one or more material entities.
creation date: 2013-09-23T16:04:08Z
has db xref: EcoLexicon:environment
has exact synonym: environment
comment: In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised.

Axiom
annotated source: environmental system
annotated property: definition
annotated target: A system which has the disposition to environ one or more material entities.
has db xref: DOI:10.1186/2041-1480-4-43

mineral material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: mineral
subclass of: solid environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: mineral
definition: A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
editor note: Look for "mineral" in a chemical or geochemical ontology to formalise the composed primarily of link. From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-05T12:37:41Z
has db xref: LTER:341

Axiom
annotated source: mineral material
annotated property: definition
annotated target: A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
has db xref: https://en.wikipedia.org/wiki/Mineral

water vapour
type: Class
subclass of: gaseous environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: water
definition: Water vapour is a vapour which is the gas phase of water.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-10T07:58:18Z
has exact synonym: aqueous vapor
has exact synonym: aqueous vapour
has exact synonym: water vapor
comment: Perhaps a better relation between water vapour and water can be found in or added to RO?

Axiom
annotated source: water vapour
annotated property: definition
annotated target: Water vapour is a vapour which is the gas phase of water.
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: water vapour
annotated property: hasExactSynonym
annotated target: aqueous vapor
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: water vapour
annotated property: hasExactSynonym
annotated target: aqueous vapour
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: water vapour
annotated property: hasExactSynonym
annotated target: water vapor
has db xref: https://en.wikipedia.org/wiki/Water_vapor

atmosphere
type: Class
subclass of: fluid layer
subclass of: Restriction
  on property: adjacent to
  some values from: astronomical body
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001547
definition: An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-10T08:14:50Z
has db xref: LTER:48

Axiom
annotated source: atmosphere
annotated property: definition
annotated target: An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
has db xref: https://en.wikipedia.org/wiki/Atmosphere
has db xref: https://en.wikipedia.org/wiki/Physical_geography

atmospheric water vapour
type: Class
equivalent class: Class
  intersection of: water vapour
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
subclass of: water vapour
subclass of: Restriction
  on property: is part of
  some values from: atmosphere
subclass of: Restriction
  on property: has role
  some values from: greenhouse gas
definition: Atmospheric water vapour is water vapour that is part of an atmosphere.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-10T08:22:07Z
has exact synonym: atmospheric water vapor
has OBO namespace: ENVO
id: ENVO:01000268
in subset: envoPolar

Axiom
annotated source: atmospheric water vapour
annotated property: definition
annotated target: Atmospheric water vapour is water vapour that is part of an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Water_vapor

Axiom
annotated source: atmospheric water vapour
annotated property: hasExactSynonym
annotated target: atmospheric water vapor
has db xref: https://en.wikipedia.org/wiki/Water_vapor

ecoregion
type: Class
subclass of: astronomical body part
subclass of: ecosystem
subclass of: Restriction
  on property: is part of
  some values from: ecozone
definition: A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-12T17:21:09Z
in subset: envoPolar
comment: Unlike biomes, ecoregions are geographically defined entities. ENVO's sister project, GAZ, contains terms for instances of ecoregions (e.g. Beringia lowland tundra). Requests for new terms should be directed to GAZ. ENVO will only contain this top-level class. The class' definition is preliminary and will be aligned to BFO.

Axiom
annotated source: ecoregion
annotated property: definition
annotated target: A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
has db xref: DOI:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
has db xref: URL:http://worldwildlife.org/biomes

water ice
type: Class
equivalent class: Class
  intersection of: ice
  intersection of: Restriction
    on property: composed primarily of
    some values from: water
subclass of: ice
subclass of: Restriction
  on property: formed as result of
  some values from: Class
    union of: freezing of water into water ice
    union of: compaction process
    union of: desublimation of water vapour into ice
subclass of: Restriction
  on property: composed primarily of
  some values from: water
definition: Ice which is formed from water.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2013-10-13T12:01:28Z
has db xref: Ice
has db xref: LTER:262
has_related_synonym: ice
in subset: envoPolar
comment: Water ice can appear transparent or opaque bluish-white color, depending on the presence of impurities or air inclusions. The addition of other materials such as soil may further alter its appearance. When speaking about ice on Earth, usually water ice is meant - the solid, crystalline form of water found in the atmosphere as snow crystals, hail, ice pellets, etc., and on the earth's surface in forms such as hoarfrost, rime, glaze, sea ice, glacier ice, ground ice, frazil, anchor ice, etc. This form of water is, strictly speaking, called ice Ih, the Roman numeral I distinguishing it from more than a dozen other phases and the letter h distinguishing it from the metastable cubic phase ice Ic. Ice Ih is the only one of the several known phases of water ice that is stable at commonly occurring temperatures and pressures. (Some of the other forms have very unusual properties, ice VII, for example, being stable only at pressures above 22 400 kg/cm^2, but then existing at temperatures up to about 100C.) It has an open structure with a specific gravity of 0.9166 which is slightly less than water; because the water molecules bond to their neighbors covalently only in four directions; it therefore floats on higher density water, where broken molecular bonds permit closer packing. All commonly occurring forms of ice are crystalline, although large single crystals are relatively rare except in glaciers. The ice crystal lattice possesses hexagonal symmetry that manifests itself in the gross forms of such single crystals as are sometimes found in snow. At an air pressure of one atmosphere, ice melts at 0 C by definition of the Celsius temperature scale. (Strictly speaking the equilibrium point among water, ice, and vapor occurs at +0.01C, the triple point.) On the other hand, ice does not invariably form in liquid water cooled below this temperature; it has a tendency to supercool, more so in the absence of ice nuclei. In permafrost regions, ice may occupy voids in soils and roc…

Axiom
annotated source: water ice
annotated property: definition
annotated target: Ice which is formed from water.
has db xref: https://en.wikipedia.org/wiki/Ice

Axiom
annotated source: water ice
annotated property: has_related_synonym
annotated target: ice
has db xref: http://www.eionet.europa.eu/gemet/concept/4131

ecozone
type: Class
subclass of: astronomical body part
subclass of: ecosystem
subclass of: Restriction
  on property: is part of
  some values from: biosphere
definition: Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-13T18:32:46Z
in subset: envoPolar
comment: ENVO contains this top-level class, but all instances will be in GAZ. The definition is preliminary and will be aligned to BFO. https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of botany or zoogeographic regions of zoology. Ecozones are characterized by the evolutionary history of the organisms they contain. They are distinct from biomes, also known as major habitat types, which are divisions of the Earth's surface based on life form, or the adaptation of plants and animals to climatic, soil, and other conditions. Biomes are characterized by similar climax vegetation. Each ecozone may include a number of different biomes. A tropical moist broadleaf forest in Central America, for example, may be similar to one in New Guinea in its vegetation type and structure, climate, soils, etc., but these forests are inhabited by plants and animals with very different evolutionary histories.

Axiom
annotated source: ecozone
annotated property: definition
annotated target: Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
has db xref: https://en.wikipedia.org/wiki/ecozone

layer
type: Class
subclass of: material entity
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000689
subclass of: Restriction
  on property: has quality
  some values from: PATO_0002124
definition: A material entity which 1) is spatially continuous, 2) is composed of material of comparable thickness, composition, and physical properties, and 3) is physically distinct from adjacent portions of environmental material.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2013-10-15T16:42:02Z
in subset: envoPolar

Axiom
annotated source: layer
annotated property: definition
annotated target: A material entity which 1) is spatially continuous, 2) is composed of material of comparable thickness, composition, and physical properties, and 3) is physically distinct from adjacent portions of environmental material.
has db xref: layer

lake layer
type: Class
equivalent class: Class
  intersection of: aquatic layer
  intersection of: Restriction
    on property: is part of
    some values from: lake
subclass of: aquatic layer
subclass of: hydroform
subclass of: Restriction
  on property: is part of
  some values from: lake
definition: A layer which is part of a lake.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-15T16:57:43Z
has OBO namespace: ENVO
id: ENVO:01000283
in subset: envoPolar
comment: Note that this class does not contain metalimnion as a subclass. The metaliminon is classified as a thermocline.

ice mass
type: Class
equivalent class: Class
  intersection of: mass of solid material
  intersection of: Restriction
    on property: composed primarily of
    some values from: water ice
subclass of: mass of solid material
subclass of: cryoform
subclass of: Restriction
  on property: is part of
  some values from: cryosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
definition: A mass of water ice.
editor note: Class should be populated by inference and asserted subclasses redistributed.
created by: ORCID:0000-0002-4366-3088
creation date: 2013-10-15T19:49:11Z
has broad synonym: accumulation of ice
has broad synonym: ice accumulation
has db xref: http://sweetontology.net/phenCryo/Accumulation
in subset: envoPolar

marine layer
type: Class
equivalent class: Class
  intersection of: aquatic layer
  intersection of: Restriction
    on property: is part of
    some values from: Class
      union of: ocean
      union of: sea
subclass of: aquatic layer
subclass of: hydroform
subclass of: Restriction
  on property: is part of
  some values from: marine water body
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: ocean
    union of: sea
subclass of: Restriction
  on property: composed primarily of
  some values from: sea water
definition: A layer that is part of a marine water body.
created by: ORCID:0000-0002-4366-3088
in subset: envoMarine
in subset: envoPolar

Axiom
annotated source: marine layer
annotated property: definition
annotated target: A layer that is part of a marine water body.
has db xref: ORCID:0000-0002-4366-3088

endolithic environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: surrounded by
    some values from: rock
subclass of: environmental system
subclass of: Restriction
  on property: surrounded by
  some values from: rock
definition: An endolithic environment is an environment that exists within solid rock.

saline water environment
type: Class
subclass of: aquatic environment
subclass of: saline environment
definition: An environmental system which has its properties and dynamics determined by saline water.
alternative term: Water (saline)
in subset: envoEmpo
in subset: envoOmics
in subset: envoPolar

Axiom
annotated source: saline water environment
annotated property: alternative term
annotated target: Water (saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

cold environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001306
subclass of: environmental system
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001306
definition: An environment which has a lower temperature than some local or global average.
in subset: envoPolar
comment: The definition of the deprecated 'cold temperature habitat' class, which this class was derived from, quotes an upper threshold of 15 degrees Celsius for 'coldness'.

anthropogenic environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: formed as result of
    some values from: anthropisation
subclass of: environmental system
subclass of: Restriction
  on property: formed as result of
  some values from: anthropisation
definition: An anthropogenic environment is an environmental system which is the product of human activity.
comment: Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic.

high osmolarity environment
type: Class
equivalent class: Class
  intersection of: environmental system determined by a quality
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001657
subclass of: environmental system determined by a quality
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001657
definition: A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes.

acidic environment
type: Class
subclass of: environmental system determined by a quality
definition: An acidic environment is an environment in which material entities are exposed to a low pH.

aquatic environment
type: Class
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
definition: An environment whose dynamics are strongly influenced by water.

rocky slope
type: Class
equivalent class: Class
  intersection of: slope
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: surface layer
      intersection of: Restriction
        on property: composed primarily of
        some values from: rock
subclass of: slope
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: surface layer
    intersection of: Restriction
      on property: composed primarily of
      some values from: rock
definition: A rocky slope is a slope which has a surface primarily composed of rock.

marine environment
type: Class
subclass of: environmental system
subclass of: astronomical body part
definition: A marine environment and enviroment which is determined by a marine water body.
in subset: envoPolar

Axiom
annotated source: marine environment
annotated property: definition
annotated target: A marine environment and enviroment which is determined by a marine water body.
has db xref: NM:nm

sea water environment
type: Class
subclass of: saline water environment
definition: An environmental system determined by seawater.
has exact synonym: ocean water environment
in subset: envoPolar

atmospheric boundary layer
type: Class
equivalent class: Class
  intersection of: Class
    intersection of: boundary layer
    intersection of: Restriction
      on property: is part of
      some values from: atmosphere
    intersection of: Restriction
      on property: adjacent to
      some values from: planetary surface
  intersection of: Restriction
    on property: bounding layer of
    some values from: atmosphere
subclass of: boundary layer
subclass of: Restriction
  on property: is part of
  some values from: atmosphere
subclass of: Restriction
  on property: bounding layer of
  some values from: atmosphere
subclass of: Restriction
  on property: adjacent to
  some values from: planetary surface
definition: The atmospheric boundary layer is the lowest layer of an atmosphere which is strongly influenced by its contact with a planetary surface with strong vertical mixing and in which physical quantities such as flow velocity, temperature, and moisture display rapid fluctuations (turbulence).
has exact synonym: planetary boundary layer
in subset: envoPolar

planetary surface
type: Class
equivalent class: Class
  intersection of: surface of an astronomical body
  intersection of: Restriction
    on property: is part of
    some values from: planet
subclass of: surface of an astronomical body
subclass of: Class
  union of: Restriction
    on property: adjacent to
    some values from: atmosphere
  union of: Restriction
    on property: adjacent to
    some values from: outer space
subclass of: Restriction
  on property: is part of
  some values from: planet
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: solid environmental material
    union of: liquid environmental material
definition: A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with an atmosphere or outer space.
comment: a useful class: this can be used to define sub-terrestrial and sub-marine entities

aquatic layer
type: Class
equivalent class: Class
  intersection of: liquid layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid water
subclass of: liquid layer
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
definition: A layer in a water mass, itself composed primarily of water.
in subset: envoPolar
comment: This class will eventually be populated by inference, and its asserted subclasses removed.

dome swamp
type: Class
equivalent class: Class
  intersection of: swamp ecosystem
  intersection of: Restriction
    on property: partially_surrounded_by
    some values from: depressed landform
subclass of: swamp ecosystem
subclass of: Restriction
  on property: partially_surrounded_by
  some values from: depressed landform
definition: A dome swamp is a swamp which occurs in a depression where deeper waters at the centre of the swamp allow trees to grow taller relative to those in shallower regions of the depression. This creates a dome-like shape.
comment: The logical def should be improved with the idea of a vegetation unit growing in a depression expressed.

understory
type: Class
subclass of: vegetation layer
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: forest ecosystem
    union of: woodland ecosystem
definition: An understory is a layer of plant life which grows below the canopy without penetrating it.
has exact synonym: under story
has exact synonym: undergrowth
has exact synonym: understorey

Axiom
annotated source: understory
annotated property: definition
annotated target: An understory is a layer of plant life which grows below the canopy without penetrating it.
has db xref: https://en.wikipedia.org/wiki/Understory

shrub layer
type: Class
subclass of: vegetation layer
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: forest ecosystem
    union of: woodland ecosystem
definition: A shrub layer is a layer of vegetation in a woodland or forest consisting of low, woody vegetation of frutescent form.

Axiom
annotated source: shrub layer
annotated property: definition
annotated target: A shrub layer is a layer of vegetation in a woodland or forest consisting of low, woody vegetation of frutescent form.
has db xref: http://www.treeterms.co.uk/definitions/shrub-layer

herb and fern layer
type: Class
subclass of: vegetation layer
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: forest ecosystem
    union of: woodland ecosystem
subclass of: Restriction
  on property: has quality
  some values from: PATO_0002352
definition: A herb and fern layer is a layer of a forest or woodland which is composed of all vascular plant life that are one metre or less in height.
has exact synonym: fern layer
has exact synonym: herb layer
has exact synonym: herb stratum
has exact synonym: herbaceous layer
has exact synonym: herbaceous stratum
has exact synonym: herbaceous understory
has_related_synonym: ground cover
has_related_synonym: ground vegetation
has_related_synonym: regeneration layer
comment: This definition is inclusive of non-herbaceous plants that may be transiently present in the "herb layer". See Gilliam FS (2007) The Ecological Significance of the Herbaceous Layer in Temperate Forest Ecosystems. BioScience. 57(10):845-858. (http://dx.doi.org/10.1641/B571007) for rationale and a review of definitional and terminological variation.

Axiom
annotated source: herb and fern layer
annotated property: definition
annotated target: A herb and fern layer is a layer of a forest or woodland which is composed of all vascular plant life that are one metre or less in height.
has db xref: http://dx.doi.org/10.1641/B571007

polar biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: polar
subclass of: biome
subclass of: polar environment
definition: A biome which is subject to polar climatic conditions.
in subset: envoPolar
comment: This class is primarily for inference and, in general, should not be used directly by annotators. If you're an annotator, please consider using a more informative term such as 'tundra biome'.

alpine
type: Class
subclass of: altitudinal condition
definition: An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline.
created by: ORCID:0000-0002-4366-3088
has db xref: LTER:26
in subset: envoPolar
comment: Requested term with preliminary def. See Issue 29 on the envo tracker.

Axiom
annotated source: alpine
annotated property: definition
annotated target: An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline.
has db xref: https://en.wikipedia.org/wiki/Altitudinal_zonation

montane
type: Class
subclass of: altitudinal condition
definition: An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
created by: ORCID:0000-0002-4366-3088
has db xref: LTER:350
in subset: envoPolar
comment: The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.

Axiom
annotated source: montane
annotated property: definition
annotated target: An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
has db xref: https://en.wikipedia.org/wiki/Altitudinal_zonation

Axiom
annotated source: montane
annotated property: comment
annotated target: The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.
has db xref: https://en.wikipedia.org/wiki/Altitudinal_zonation

altitudinal condition
type: Class
subclass of: environmental condition
definition: An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
created by: ORCID:0000-0002-4366-3088
in subset: envoPolar
comment: Depending on the latitude (and, to a lesser extent, other factors), the actual location of the zones where these conditions are in effect will change.

Axiom
annotated source: altitudinal condition
annotated property: definition
annotated target: An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
has db xref: https://en.wikipedia.org/wiki/Altitudinal_zonation

root matter
type: Class
subclass of: organic material
subclass of: Restriction
  on property: is part of
  some values from: PO_0009005
definition: An organic material primarily composed of a portion of plant root.
comment: Requested in Issue 115 as part of the annotation of metagenomic submissions present in the European Nucleotide Archive.

field
type: Class
subclass of: astronomical body part
definition: An unbroken expanse (as of ice)
created by: ORCID:0000-0002-4366-3088
in subset: envoPolar
comment: This class was created to accommodate "fields" from agricultural fields to marine mesoscale eddy fields. Thus, it has a very broad definition which makes it less than informative when annotating. Please consider using or requesting an appropriate subclass.

Axiom
annotated source: field
annotated property: definition
annotated target: An unbroken expanse (as of ice)
has db xref: http://www.merriam-webster.com/dictionary/field

vegetation layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: NCBITaxon_33090
subclass of: layer
subclass of: Restriction
  on property: is part of
  some values from: Class
    intersection of: ecosystem
    intersection of: Restriction
      on property: has part
      some values from: Class
        intersection of: PCO_0000002
        intersection of: Restriction
subclass of: Restriction
  on property: composed primarily of
  some values from: NCBITaxon_33090
definition: A layer which is determined by a form of vegetation.
has_related_synonym: forest layer
has_related_synonym: forest stratum
has_related_synonym: woodland layer
has_related_synonym: woodland stratum
comment: Usually found in woodlands and forests.

acidic water
type: Class
equivalent class: Class
  intersection of: liquid water
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001429
subclass of: liquid water
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001429
definition: A portion of acidic water is a portion of water with a pH less than 7.

temperate evergreen needleleaf forest
type: Class
subclass of: needleleaf forest
subclass of: temperate forest
subclass of: Restriction
  on property: is part of
  some values from: temperate coniferous forest biome
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001733
definition: An evergreen needleleaf forest which is subject to temperate climate patterns.
has broad synonym: coniferous forest
comment: This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).

temperate deciduous broadleaf forest
type: Class
subclass of: tropical broadleaf forest
subclass of: temperate forest
subclass of: Restriction
  on property: is part of
  some values from: temperate broadleaf forest biome
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001731
definition: A deciduous broadleaf forest which is subject to temperate climate patterns.
comment: This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).

temperate deciduous needleleaf forest
type: Class
subclass of: needleleaf forest
subclass of: temperate forest
subclass of: Restriction
  on property: is part of
  some values from: temperate coniferous forest biome
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001731
definition: A deciduous needleleaf forest which is subject to temperate climate patterns.
has broad synonym: coniferous forest
comment: This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).

temperate mixed broadleaf forest
type: Class
subclass of: temperate mixed forest
subclass of: Restriction
  on property: is part of
  some values from: Class
    intersection of: temperate broadleaf forest biome
    intersection of: temperate mixed forest biome
definition: A temperate mixed forest which has communities of trees composed primarily of species with broad leaves.
comment: This class corresponds to the "Temperate Mixed broadleaf / needleleaf forest" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the "temperate mixed needleleaf forest" class can be made.

temperate mixed needleleaf forest
type: Class
subclass of: temperate mixed forest
subclass of: Restriction
  on property: is part of
  some values from: temperate mixed forest biome
definition: A temperate mixed forest which has communities of trees composed primarily of species with needle-like leaves (e.g. conifers).
has_related_synonym: coniferous forest
comment: This class corresponds to the "Temperate Mixed broadleaf / needleleaf forest" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the "temperate mixed broadleaf forest" class can be made.

temperate sclerophyllous dry forest
type: Class
subclass of: sclerophyllous forest
subclass of: temperate forest
subclass of: Restriction
  on property: has quality
  some values from: arid
definition: A sclerophyllous forest which is subject to temperate climate patterns.
comment: This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).

temperate broadleaf evergreen forest
type: Class
equivalent class: Class
  intersection of: temperate broadleaf forest
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001733
subclass of: temperate broadleaf forest
subclass of: Restriction
  on property: is part of
  some values from: temperate broadleaf forest biome
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001733
definition: A broadleaf evergreen forest which is subject to temperate climate patterns.
comment: This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).

temperate freshwater swamp forest
type: Class
subclass of: swamp forest
subclass of: temperate forest
definition: A freshwater swamp forest which is subject to temperate climate patterns.
comment: This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000). It is currently unclear how to relate forests and swamps.

snow
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has part
  some values from: air
subclass of: Restriction
  on property: output of
  some values from: snowfall
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: object aggregate
    intersection of: Restriction
      on property: has member
      some values from: snow crystal
definition: Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
in subset: envoPolar

Axiom
annotated source: snow
annotated property: definition
annotated target: Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
has db xref: http://www.eionet.europa.eu/gemet/concept/7769
has db xref: https://en.wikipedia.org/wiki/Snow

environmental zone
type: Class
subclass of: fiat object
subclass of: Restriction
  on property: is part of
  some values from: environmental system
definition: A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.
has_related_synonym: environmental area
in subset: envoPolar
comment: Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition.

old plant
type: Class
equivalent class: Class
  intersection of: PO_0000003
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0000308
subclass of: PO_0000003
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000308
definition: A whole plant which is relatively old

young plant
type: Class
equivalent class: Class
  intersection of: PO_0000003
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0000309
subclass of: PO_0000003
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000309
definition: A whole plant which is relatively young.

house
type: Class
subclass of: building
definition: A house is a building that provides a dwelling-place for a living entity.
comment: The provisioning of a dwelling-place can perhaps be modelled as a role.

Axiom
annotated source: house
annotated property: definition
annotated target: A house is a building that provides a dwelling-place for a living entity.
has db xref: https://en.wikipedia.org/wiki/Home
has db xref: https://en.wikipedia.org/wiki/House

human house
type: Class
subclass of: house
subclass of: domestic building
comment: A human house is a house which provides a dwelling-place for humans.

building part
type: Class
subclass of: human construction
subclass of: Restriction
  on property: is part of
  some values from: building
definition: A building part is a construction which is part of a building.
comment: Not recommended for annotation. This class is likely to be made into an inferred class as its subclasses are distributed among more meaningful superclasses (i.e. ceiling is_a surface layer). See for example, "building floor". The boundaries between building parts may be bona fide or fiat.

room
type: Class
subclass of: building part
definition: A building part which is separated from other building parts by one or more interior walls and, optionally, outdoor areas by one or more exterior walls.
created by: ORCID:0000-0002-4366-3088

Axiom
annotated source: room
annotated property: definition
annotated target: A building part which is separated from other building parts by one or more interior walls and, optionally, outdoor areas by one or more exterior walls.
has db xref: https://en.wikipedia.org/wiki/Room

broadleaf forest
type: Class
subclass of: forest ecosystem
definition: A forest biome which contains densely packed populations or communities of broadleaf trees, strongly limiting light penetration to the forest floor.
comment: A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.

mixed forest
type: Class
subclass of: forest ecosystem
definition: A forest ecosystem which contains densely packed populations or communities of broadleaf and coniferous trees, strongly limiting light penetration to the forest floor.
comment: A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending. The subclasses of this class need to be checked: are they properly placed under other classes or is this corrected and the dominant form of mixed vegetation noted in the label?

swamp forest
type: Class
subclass of: forest ecosystem
subclass of: Restriction
  on property: overlaps
  some values from: swamp ecosystem
comment: A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.

needleleaf forest
type: Class
subclass of: forest ecosystem
has exact synonym: coniferous forest
comment: A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.

sclerophyllous forest
type: Class
subclass of: forest ecosystem
comment: A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.

montane forest
type: Class
equivalent class: Class
  intersection of: forest ecosystem
  intersection of: Restriction
    on property: has quality
    some values from: Class
      union of: alpine
      union of: montane
subclass of: forest ecosystem
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: alpine
    union of: montane
comment: A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.

concrete masonry unit
type: Class
subclass of: masonry unit
subclass of: Restriction
  on property: composed primarily of
  some values from: concrete
definition: A concrete masonry unit is a large, rectangular masonry unit primarily composed of concrete.
created by: ORCID:0000-0002-4366-3088

Axiom
annotated source: concrete masonry unit
annotated property: definition
annotated target: A concrete masonry unit is a large, rectangular masonry unit primarily composed of concrete.
has db xref: https://en.wikipedia.org/wiki/Concrete_masonry_unit

masonry unit
type: Class
subclass of: manufactured product
definition: A masonry unit is a solid piece of material, usually with a regular shape, used as a component in the construction of buildings. Masonry units are usually composed of brick, stone, marble, granite, travertine, limestone, cast stone, concrete block, glass block, stucco, tile, or cob.
created by: ORCID:0000-0002-4366-3088

Axiom
annotated source: masonry unit
annotated property: definition
annotated target: A masonry unit is a solid piece of material, usually with a regular shape, used as a component in the construction of buildings. Masonry units are usually composed of brick, stone, marble, granite, travertine, limestone, cast stone, concrete block, glass block, stucco, tile, or cob.
has db xref: https://en.wikipedia.org/wiki/Masonry

concrete
type: Class
subclass of: anthropogenic environmental material
subclass of: Restriction
  on property: has part
  some values from: masonry cement
definition: Concrete is a composite material composed of an aggregate bonded together with a fluid cement which hardens over time.
created by: ORCID:0000-0002-4366-3088
comment: Missing the class for "aggregate" - tricky to define what it is, exactly. Again, seems more like some sort of material/disposition hybrid.

Axiom
annotated source: concrete
annotated property: definition
annotated target: Concrete is a composite material composed of an aggregate bonded together with a fluid cement which hardens over time.
has db xref: https://en.wikipedia.org/wiki/Concrete

masonry cement
type: Class
subclass of: anthropogenic environmental material
definition: Masonry cement is a substance used in construction that has the disposition to set and harden and thus may be used to bind materials together.
created by: ORCID:0000-0002-4366-3088
has broad synonym: cement
comment: "Cement" refers more to a disposition than a specific material.

Axiom
annotated source: masonry cement
annotated property: definition
annotated target: Masonry cement is a substance used in construction that has the disposition to set and harden and thus may be used to bind materials together.
has db xref: https://en.wikipedia.org/wiki/Cement

building wall
type: Class
subclass of: building part
definition: Building walls are bulding parts which serve to support roofs, floors and ceilings; enclose a space as part of the building envelope; give buildings form; and to provide shelter and security.
comment: This is a building part and not the same as a standalone wall, which is a building in its own right.

Axiom
annotated source: building wall
annotated property: definition
annotated target: Building walls are bulding parts which serve to support roofs, floors and ceilings; enclose a space as part of the building envelope; give buildings form; and to provide shelter and security.
has db xref: https://en.wikipedia.org/wiki/Wall

exterior wall
type: Class
subclass of: building wall
definition: An exterior wall is a building wall which separates the interior of a building from the buildings surrounding environment.
created by: ORCID:0000-0002-4366-3088

building envelope
type: Class
subclass of: building part
subclass of: Restriction
  on property: has part
  some values from: exterior wall
subclass of: Restriction
  on property: has part
  some values from: building roof
definition: A building envelope is a building part composed of those building parts which physically separate the interior of a building from its surrounding environment. The building envelope provides resistance to air, water, heat, light, and noise transfer. The three basic elements of a building envelope are a weather barrier, air barrier, and thermal barrier.
created by: ORCID:0000-0002-4366-3088
has_related_synonym: building enclosure

Axiom
annotated source: building envelope
annotated property: definition
annotated target: A building envelope is a building part composed of those building parts which physically separate the interior of a building from its surrounding environment. The building envelope provides resistance to air, water, heat, light, and noise transfer. The three basic elements of a building envelope are a weather barrier, air barrier, and thermal barrier.
has db xref: https://en.wikipedia.org/wiki/Building_envelope

ceiling
type: Class
subclass of: building part
subclass of: Restriction
  on property: is part of
  some values from: room
created by: ORCID:0000-0002-4366-3088
has_related_synonym: A ceiling is an overhead interior surface that covers the upper limit of a room. It is not generally considered a structural element, but a finished surface concealing the underside of the floor or roof structure above.

Axiom
annotated source: ceiling
annotated property: has_related_synonym
annotated target: A ceiling is an overhead interior surface that covers the upper limit of a room. It is not generally considered a structural element, but a finished surface concealing the underside of the floor or roof structure above.
has db xref: https://en.wikipedia.org/wiki/Ceiling

building roof
type: Class
subclass of: building part
subclass of: Restriction
  on property: is part of
  some values from: building envelope
definition: A roof is the covering on the uppermost part of a building which provides protection from animals and weather, notably rain, but also heat, wind and sunlight. A roof is also the framing or structure which supports the covering
created by: ORCID:0000-0002-4366-3088
has broad synonym: roof
comment: This class is meant to represent roofs which are parts of buildings, rather than a roofs of cave and other natural formations.

Axiom
annotated source: building roof
annotated property: definition
annotated target: A roof is the covering on the uppermost part of a building which provides protection from animals and weather, notably rain, but also heat, wind and sunlight. A roof is also the framing or structure which supports the covering
has db xref: https://en.wikipedia.org/wiki/Roof

brick material
type: Class
subclass of: manufactured product
subclass of: anthropogenic environmental material
subclass of: solid environmental material
definition: A portion of brick material is a material derived from a brick which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete that has been fire-hardened or air-dried.
created by: ORCID:0000-0002-4366-3088

Axiom
annotated source: brick material
annotated property: definition
annotated target: A portion of brick material is a material derived from a brick which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete that has been fire-hardened or air-dried.
has db xref: https://en.wikipedia.org/wiki/Brick

brick
type: Class
subclass of: masonry unit
definition: A brick is a masonry unit which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete material, fire-hardened or air-dried.
created by: ORCID:0000-0002-4366-3088
comment: Generally used to refer to the masonry unit rather than a material.

Axiom
annotated source: brick
annotated property: definition
annotated target: A brick is a masonry unit which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete material, fire-hardened or air-dried.
has db xref: https://en.wikipedia.org/wiki/Brick

brick exterior wall
type: Class
subclass of: solid astronomical body part
subclass of: exterior wall
subclass of: Restriction
  on property: has part
  some values from: brick
subclass of: Restriction
  on property: composed primarily of
  some values from: brick material
definition: A brick exterior wall is an exterior wall that is built from bricks.
created by: ORCID:0000-0002-4366-3088
has broad synonym: brick wall

concrete exterior wall
type: Class
subclass of: exterior wall
subclass of: Restriction
  on property: has part
  some values from: concrete masonry unit
subclass of: Restriction
  on property: composed primarily of
  some values from: concrete
definition: A concrete exterior wall is an exterior wall that is composed primarily of concrete.
created by: ORCID:0000-0002-4366-3088
has broad synonym: concrete wall

iron sheet
type: Class
subclass of: manufactured product
subclass of: Restriction
  on property: composed primarily of
  some values from: iron atom
definition: An iron sheet is a mass of iron which has been forged into a roughly planar form of less than 6 millimetres in thickness.
created by: ORCID:0000-0002-4366-3088

Axiom
annotated source: iron sheet
annotated property: definition
annotated target: An iron sheet is a mass of iron which has been forged into a roughly planar form of less than 6 millimetres in thickness.
has db xref: https://en.wikipedia.org/wiki/Sheet_metal

sheet-iron building roof
type: Class
subclass of: building roof
subclass of: Restriction
  on property: has part
  some values from: iron sheet
definition: A sheet-iron building roof is a building roof that is built from sheets of iron.
created by: ORCID:0000-0002-4366-3088
has broad synonym: sheet iron roof
has broad synonym: sheet-iron roof
has exact synonym: iron sheet building roof

asbestos building roof
type: Class
subclass of: building roof
definition: An asbestos building roof is a building roof that is built from asbestos.
created by: ORCID:0000-0002-4366-3088
has broad synonym: asbestos roof
comment: asbestos exists in CHEBI and will be imported to complete this class' logical def.

tile
type: Class
subclass of: manufactured product
definition: A tile is a manufactured piece of hard-wearing material such as ceramic, stone, metal, or even glass, generally used for covering roofs, floors, walls, showers, or other objects such as tabletops. Alternatively, tile can sometimes refer to similar units made from lightweight materials such as perlite, wood, and mineral wool, typically used for wall and ceiling applications.
created by: ORCID:0000-0002-4366-3088

Axiom
annotated source: tile
annotated property: definition
annotated target: A tile is a manufactured piece of hard-wearing material such as ceramic, stone, metal, or even glass, generally used for covering roofs, floors, walls, showers, or other objects such as tabletops. Alternatively, tile can sometimes refer to similar units made from lightweight materials such as perlite, wood, and mineral wool, typically used for wall and ceiling applications.
has db xref: https://en.wikipedia.org/wiki/Tile

tiled building roof
type: Class
subclass of: building roof
subclass of: Restriction
  on property: has part
  some values from: tile
definition: A tile building roof is a building roof that is built using tiles.
created by: ORCID:0000-0002-4366-3088
has broad synonym: tile roof
has broad synonym: tiled roof
has exact synonym: tile building roof

toilet fixture
type: Class
subclass of: plumbing fixture
definition: A fixture which is used primarily for the collection and, in some cases, disposal of human urine and feces.
created by: ORCID:0000-0002-4366-3088
has broad synonym: toilet
comment: "disposal" may not be the most precise way to describe fill-in latrines. Note that no assertion is made on whether these fixtures are in- or outdoors.

Axiom
annotated source: toilet fixture
annotated property: definition
annotated target: A fixture which is used primarily for the collection and, in some cases, disposal of human urine and feces.
has db xref: https://en.wikipedia.org/wiki/Toilet

factory
type: Class
subclass of: industrial building
subclass of: Restriction
  on property: has part
  some values from: industrial building
definition: A factory (previously manufactory) or manufacturing plant is an industrial site, usually consisting of buildings and machinery, or more commonly a complex having several buildings, where workers manufacture goods or operate machines processing one product into another.
created by: ORCID:0000-0002-4366-3088
has exact synonym: manufactory
has exact synonym: manufacturing plant

Axiom
annotated source: factory
annotated property: definition
annotated target: A factory (previously manufactory) or manufacturing plant is an industrial site, usually consisting of buildings and machinery, or more commonly a complex having several buildings, where workers manufacture goods or operate machines processing one product into another.
has db xref: https://en.wikipedia.org/wiki/Factory

stratosphere
type: Class
subclass of: atmospheric layer
subclass of: Class
  intersection of: Class
    intersection of: Restriction
      on property: adjacent to
      some values from: mesosphere
    intersection of: Restriction
      on property: adjacent to
      some values from: troposphere
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
definition: The layer of the atmosphere which is sandwiched between the troposphere and mesosphere. Of the energy that reaches the Earth from the sun, only 3% is absorbed in the stratosphere, but that includes the vitally important process of absorption of ultraviolet radiation by the stratospheric ozone layer. The stratosphere is cloudless and dust free, and almost unaffected by the turbulent conditions of the underlying level of the atmosphere. (Source: WRIGHT)
created by: ORCID:0000-0002-4366-3088
comment: Definition from GEMET - will be refined.

Axiom
annotated source: stratosphere
annotated property: definition
annotated target: The layer of the atmosphere which is sandwiched between the troposphere and mesosphere. Of the energy that reaches the Earth from the sun, only 3% is absorbed in the stratosphere, but that includes the vitally important process of absorption of ultraviolet radiation by the stratospheric ozone layer. The stratosphere is cloudless and dust free, and almost unaffected by the turbulent conditions of the underlying level of the atmosphere. (Source: WRIGHT)
has db xref: GEMET:http://www.eionet.europa.eu/gemet/concept/8128

mesosphere
type: Class
subclass of: atmospheric layer
subclass of: Class
  intersection of: Class
    intersection of: Restriction
      on property: adjacent to
      some values from: stratosphere
    intersection of: Restriction
      on property: adjacent to
      some values from: thermosphere
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
definition: The mesosphere is part of the earth's atmosphere which is between the stratosphere and the thermosphere in which temperature decreases with altitude to the atmosphere's absolute minimum
created by: ORCID:0000-0002-4366-3088

Axiom
annotated source: mesosphere
annotated property: definition
annotated target: The mesosphere is part of the earth's atmosphere which is between the stratosphere and the thermosphere in which temperature decreases with altitude to the atmosphere's absolute minimum
has db xref: http://www.merriam-webster.com/dictionary/mesosphere

troposphere
type: Class
subclass of: atmospheric layer
subclass of: Class
  intersection of: Class
    intersection of: Restriction
      on property: adjacent to
      some values from: planetary surface
    intersection of: Restriction
      on property: adjacent to
      some values from: stratosphere
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
definition: The lowest of the concentric layers of the atmosphere, occurring between the Earth's surface and the tropopause. It is the zone where atmospheric turbulence is at its greatest and where the bulk of the Earth's weather is generated. It contains almost all the water vapour and aerosols and three-quarters of the total gaseous mass of the atmosphere. Throughout the troposphere temperature decreases with height at a mean rate of 6.5°C/km and the whole zone is capped by either an inversion of temperature or an isothermal layer at the tropopause. (Source: WHIT)
created by: ORCID:0000-0002-4366-3088
comment: Definition from GEMET - will be refined.

Axiom
annotated source: troposphere
annotated property: definition
annotated target: The lowest of the concentric layers of the atmosphere, occurring between the Earth's surface and the tropopause. It is the zone where atmospheric turbulence is at its greatest and where the bulk of the Earth's weather is generated. It contains almost all the water vapour and aerosols and three-quarters of the total gaseous mass of the atmosphere. Throughout the troposphere temperature decreases with height at a mean rate of 6.5°C/km and the whole zone is capped by either an inversion of temperature or an isothermal layer at the tropopause. (Source: WHIT)
has db xref: GEMET:http://www.eionet.europa.eu/gemet/concept/8695

thermosphere
type: Class
subclass of: atmospheric layer
subclass of: Class
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
  intersection of: Restriction
    on property: adjacent to
    some values from: mesosphere
definition: The thermosphere is a part of the earth's atmosphere that begins at about 50 miles (80 kilometers) above the earth's surface, extends to outer space, and is characterized by steadily increasing temperature with height

Axiom
annotated source: thermosphere
annotated property: definition
annotated target: The thermosphere is a part of the earth's atmosphere that begins at about 50 miles (80 kilometers) above the earth's surface, extends to outer space, and is characterized by steadily increasing temperature with height
has db xref: http://www.merriam-webster.com/dictionary/thermosphere

atmospheric layer
type: Class
equivalent class: Class
  intersection of: fluid layer
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
subclass of: fluid layer
subclass of: Restriction
  on property: is part of
  some values from: atmosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: gaseous environmental material
definition: A layer that is part of the atmosphere.
created by: ORCID:0000-0002-4366-3088
has_related_synonym: atmospheric layering
in subset: envoPolar
comment: This could be made into an inferred class, rather than having asserted subclasses.

Axiom
annotated source: atmospheric layer
annotated property: has_related_synonym
annotated target: atmospheric layering
has db xref: GEMET:http://www.eionet.europa.eu/gemet/concept/627

boundary layer
type: Class
subclass of: fluid interface layer
subclass of: Restriction
  on property: bounding layer of
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: is part of
      some values from: environmental system
subclass of: Restriction
  on property: adjacent to
  some values from: surface layer
definition: A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
created by: ORCID:0000-0002-4366-3088
has exact synonym: boundary layer

Axiom
annotated source: boundary layer
annotated property: definition
annotated target: A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
has db xref: https://en.wikipedia.org/wiki/Boundary_layer

Axiom
annotated source: boundary layer
annotated property: hasExactSynonym
annotated target: boundary layer
has db xref: http://www.eionet.europa.eu/gemet/concept/976

motor vehicle
type: Class
equivalent class: Class
  intersection of: vehicle
  intersection of: Restriction
    on property: has part
    some values from: motor
subclass of: vehicle
subclass of: Restriction
  on property: has part
  some values from: motor
definition: A motor vehicle is a vehicle which is propelled by an engine or motor and that does not operate on rails.
comment: Subclasses will be added by inference.

Axiom
annotated source: motor vehicle
annotated property: definition
annotated target: A motor vehicle is a vehicle which is propelled by an engine or motor and that does not operate on rails.
has db xref: https://en.wikipedia.org/wiki/Motor_vehicle

vehicle
type: Class
subclass of: manufactured product
definition: A vehicle is a mobile machine which transports people or cargo.

Axiom
annotated source: vehicle
annotated property: definition
annotated target: A vehicle is a mobile machine which transports people or cargo.
has db xref: https://en.wikipedia.org/wiki/Vehicle

motor
type: Class
subclass of: manufactured product
definition: A motor is a machine designed to convert one or more forms of energy into mechanical energy.
has exact synonym: engine

Axiom
annotated source: motor
annotated property: definition
annotated target: A motor is a machine designed to convert one or more forms of energy into mechanical energy.
has db xref: https://en.wikipedia.org/wiki/Motor

lentic water body
type: Class
subclass of: water body
definition: A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow.

hydrological condensation process
type: Class
subclass of: condensation process
subclass of: hydrological process
subclass of: Restriction
  on property: has input
  some values from: atmospheric water vapour
subclass of: Restriction
  on property: has output
  some values from: liquid water
definition: Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
has broad synonym: condensation
in subset: envoAtmo
in subset: envoPolar
comment: "process" is included in the label to make it clear that we are not referring to the condensed material (e.g. water droplets, window fog)

Axiom
annotated source: hydrological condensation process
annotated property: definition
annotated target: Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
has db xref: https://en.wikipedia.org/wiki/Condensation

planetary landmass
type: Class
subclass of: planetary surface
subclass of: landmass
subclass of: Restriction
  on property: surrounded by
  some values from: Class
    complement of: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: has quality
        some values from: PATO_0001548
definition: A landmass which is part of a planet.
has broad synonym: land
has_related_synonym: ground

Axiom
annotated source: planetary landmass
annotated property: definition
annotated target: A landmass which is part of a planet.
has db xref: Adpated from https://en.wikipedia.org/wiki/Planetary_surface

outer space
type: Class
subclass of: environmental material
definition: Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
has broad synonym: space
in subset: envoAstro

Axiom
annotated source: outer space
annotated property: definition
annotated target: Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
has db xref: https://en.wikipedia.org/wiki/Outer_space

planetary crust
type: Class
subclass of: planetary structural layer
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001546
definition: A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
has broad synonym: crust
comment: This class is meant to be applicable accross planets. Earth's crust would be an instance.

Axiom
annotated source: planetary crust
annotated property: definition
annotated target: A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
has db xref: https://en.wikipedia.org/wiki/Crust_(geology)

planetary structural layer
type: Class
subclass of: layer
subclass of: astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: planet
definition: A planetary structural layer is laminar part of a terrestrial planet or other rocky body large enough to have differentiation by density. Planetary layers have differing physicochemical properties and composition.
editor note: Label should be improved to match definition.

planetary mantle
type: Class
subclass of: planetary structural layer
subclass of: Restriction
  on property: adjacent to
  some values from: planetary crust
definition: A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density.
has broad synonym: mantle
comment: This class is meant to be applicable accross planets. Earth's mantle would be an instance.

Axiom
annotated source: planetary mantle
annotated property: definition
annotated target: A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density.
has db xref: https://en.wikipedia.org/wiki/Mantle_(geology)

lithosphere
type: Class
subclass of: solid astronomical body part
subclass of: planetary structural layer
subclass of: solid layer
subclass of: Restriction
  on property: has part
  some values from: planetary crust
subclass of: Restriction
  on property: has part
  some values from: Restriction
    on property: is part of
    some values from: Class
      intersection of: planetary mantle
      intersection of: Restriction
        on property: has quality
        some values from: PATO_0001546
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001545
definition: A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties.
comment: Earth's lithosphere includes the crust and uppermost mantle.

Axiom
annotated source: lithosphere
annotated property: definition
annotated target: A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties.
has db xref: https://en.wikipedia.org/wiki/Lithosphere

dense settlement
type: Class
subclass of: human settlement
definition: A settlement with a high density of buildings and inhabitants.
editor note: See also: http://www.ecotope.org/anthromes/v1/guide/urban/12_dense_settlements/default.aspx
comment: The thresholds for what makes a settlment "dense" can be determined as needed. If there is a specific threshold that should be added to ENVO, please make a new class request.

waste role
type: Class
subclass of: role
definition: A role that is realized in some process wherein the bearer is discarded or not utilized further.
editor note: This definition is preliminary.

geological fracture
type: Class
subclass of: solid astronomical body part
subclass of: Restriction
  on property: located in
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001546
definition: A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces.
has broad synonym: fracture
has db xref: SWEETRealm:Fissure
has_related_synonym: fissure

Axiom
annotated source: geological fracture
annotated property: definition
annotated target: A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces.
has db xref: https://en.wikipedia.org/wiki/Fracture_(geology)

Axiom
annotated source: geological fracture
annotated property: has_related_synonym
annotated target: fissure
has db xref: Genomes:fissure

geological fault
type: Class
subclass of: geological fracture
definition: A geological fault is a planar fracture or discontinuity in a volume of rock, across which there has been significant displacement as a result of rock mass movement.
has broad synonym: fault
comment: The relationship between faults and active plate boundaries must be further developed, as there is some overlap.

active geological fault
type: Class
subclass of: geological fault
subclass of: Restriction
  on property: participates in
  some values from: tectonic movement
definition: An active fault is a fault that is likely to become the source of another earthquake sometime in the future. Geologists commonly consider faults to be active if there has been movement observed or evidence of seismic activity during the last 10,000 years.
has exact synonym: active fault
in subset: environmental_hazards

contaminated air
type: Class
equivalent class: Class
  intersection of: air
  intersection of: Restriction
    on property: has increased levels of
    some values from: Class
      intersection of: chemical entity
      intersection of: Restriction
        on property: has role
        some values from: environmental contaminant
subclass of: air
subclass of: Restriction
  on property: has increased levels of
  some values from: Class
    intersection of: chemical entity
    intersection of: Restriction
      on property: has role
      some values from: environmental contaminant
definition: Contaminated air is air which has sufficient concentrations of environmental pollutants such that it may adversely affect a given ecosystem.

earthquake
type: Class
subclass of: material transport process
definition: An earthquake is a process during which energy is released in an astronomical body's crust, causing the displacement of crustal parts and the generation of seismic waves.
has exact synonym: quake
has_related_synonym: temblor
has_related_synonym: tremor
in subset: environmental_hazards
comment: Elastic strain, gravity, chemical reactions, or even the motion of massive bodies can produce earthquakes.

Axiom
annotated source: earthquake
annotated property: definition
annotated target: An earthquake is a process during which energy is released in an astronomical body's crust, causing the displacement of crustal parts and the generation of seismic waves.
has db xref: Adapted from URL:http://www.britannica.com/science/earthquake-geology
has db xref: https://en.wikipedia.org/wiki/Earthquake

tectonic earthquake
type: Class
subclass of: earthquake
subclass of: Restriction
  on property: has part
  some values from: structural collapse process
subclass of: Restriction
  on property: has participant
  some values from: active geological fault
subclass of: Restriction
  on property: causally downstream of or within
  some values from: tectonic movement
definition: An earthquake caused by the sudden release of energy accumulated in an astronomical body's crust, as the elastic strain placed on constituent rock masses causes them to fracture.
in subset: environmental_hazards

Axiom
annotated source: tectonic earthquake
annotated property: definition
annotated target: An earthquake caused by the sudden release of energy accumulated in an astronomical body's crust, as the elastic strain placed on constituent rock masses causes them to fracture.
has db xref: URL:http://www.britannica.com/science/earthquake-geology

polluted lake
type: Class
equivalent class: Class
  intersection of: lake
  intersection of: Restriction
    on property: composed primarily of
    some values from: contaminated water
subclass of: lake
subclass of: Restriction
  on property: composed primarily of
  some values from: contaminated water
definition: A lake which has concentrations of environmental contaminants high enough to harm the ecosystems associated with it.
in subset: environmental_hazards

water mass
type: Class
subclass of: body of liquid
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
definition: A mass of water.

coast
type: Class
equivalent class: Class
  intersection of: compound astronomical body part
  intersection of: Restriction
    on property: overlaps
    some values from: planetary landmass
  intersection of: Restriction
    on property: overlaps
    some values from: Class
      union of: ocean
      union of: sea
      union of: lake
subclass of: compound astronomical body part
subclass of: Restriction
  on property: overlaps
  some values from: planetary landmass
subclass of: Restriction
  on property: overlaps
  some values from: Class
    union of: ocean
    union of: sea
    union of: lake
definition: A coast is the area where land meets the sea, ocean, or lake.
comment: Used for both marine and lake coasts. The boundary of the coast is fuzzy and it overlaps both the water body and land in quesiton. Compared to 'shore'

Axiom
annotated source: coast
annotated property: definition
annotated target: A coast is the area where land meets the sea, ocean, or lake.
has db xref: https://en.wikipedia.org/wiki/Coast

tsunami
type: Class
subclass of: mass liquid flow
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: ocean
    union of: sea
    union of: lake
definition: A tsunami is a process during which a series of waves is generated in a water body, typically an ocean or large lake, by the displacement of a large volume of water. Earthquakes, volcanic eruptions and other underwater explosions (including detonations of underwater nuclear devices), landslides, glacier calvings, meteorite impacts and other disturbances above or below water all have the potential to generate a tsunami.
has exact synonym: seismic sea wave
has exact synonym: tidal wave
in subset: environmental_hazards

Axiom
annotated source: tsunami
annotated property: definition
annotated target: A tsunami is a process during which a series of waves is generated in a water body, typically an ocean or large lake, by the displacement of a large volume of water. Earthquakes, volcanic eruptions and other underwater explosions (including detonations of underwater nuclear devices), landslides, glacier calvings, meteorite impacts and other disturbances above or below water all have the potential to generate a tsunami.
has db xref: https://en.wikipedia.org/wiki/Tsunami

geological subsidence
type: Class
subclass of: material transport process
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: submerged bed
    union of: planetary landmass
definition: A material transport process during which a geological surface shifts downward relative to a datum such as sea-level.
has broad synonym: subsidence
in subset: environmental_hazards

Axiom
annotated source: geological subsidence
annotated property: definition
annotated target: A material transport process during which a geological surface shifts downward relative to a datum such as sea-level.
has db xref: https://en.wikipedia.org/wiki/Subsidence

hydrological precipitation process
type: Class
subclass of: precipitation process
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: composed primarily of
        some values from: water
    intersection of: Restriction
      on property: output of
      some values from: hydrological condensation process
definition: Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
has broad synonym: precipitation
comment: "process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)

Axiom
annotated source: hydrological precipitation process
annotated property: definition
annotated target: Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
has db xref: https://en.wikipedia.org/wiki/Precipitation

condensation process
type: Class
subclass of: material congelation process
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001547
definition: Condensation is a process during which a gas undergoes a phase transition into a liquid.

Axiom
annotated source: condensation process
annotated property: definition
annotated target: Condensation is a process during which a gas undergoes a phase transition into a liquid.
has db xref: https://en.wikipedia.org/wiki/Condensation

desublimation process
type: Class
subclass of: material congelation process
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001547
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001546
definition: Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid.
has broad synonym: deposition

Axiom
annotated source: desublimation process
annotated property: definition
annotated target: Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid.
has db xref: https://en.wikipedia.org/wiki/Deposition_(phase_transition)

habitat
type: Class
subclass of: astronomical body part
subclass of: ecosystem
subclass of: Restriction
  on property: is part of
  some values from: biosphere
definition: An environmental system which can sustain and allow the growth of an ecological population.
has db xref: EcoLexicon:habitat
has db xref: LTER:238
has db xref: SWEETRealm:Habitat
has db xref: https://en.wikipedia.org/wiki/Habitat
comment: A habitat's specificity to an ecological population differentiates it from other environment classes.

Axiom
annotated source: habitat
annotated property: definition
annotated target: An environmental system which can sustain and allow the growth of an ecological population.
has db xref: EnvO:EnvO

land consumption process
type: Class
subclass of: anthropisation
subclass of: Restriction
  on property: has part
  some values from: Class
    union of: land conversion process
    union of: land degradation
subclass of: Restriction
  on property: has participant
  some values from: planetary landmass
definition: A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems.
editor note: An SDGIO request. Likely to be refined and revised. This looks like an aggregate class, subsuming a range of processes which can lead to degradation.
comment: These anthropogenic ecosystems may include urban or other built-up settlements or anthropogenic ecosystems used for activities such as forestry or agriculture.

Axiom
annotated source: land consumption process
annotated property: definition
annotated target: A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems.
has db xref: Adapted from EEA (1997) The concept of environmental space, Copenhagen, URL: http://www.eea.europa.eu/publications/92-9167-078-2/at_download/file

human dwelling
type: Class
subclass of: domestic building
definition: A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
editor note: See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work.
editor note: Subclasses will be added by inference.

Axiom
annotated source: human dwelling
annotated property: definition
annotated target: A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
has db xref: https://en.wikipedia.org/wiki/Dwelling accessed 11/25/2015

area of barren land
type: Class
subclass of: terrestrial environmental zone
subclass of: Restriction
  on property: adjacent to
  some values from: atmospheric boundary layer
definition: An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
editor note: The range of entities that are considered "barren land" are not exhaustive, making axiomatisation risky at this stage.
alternative term: Barren Land (Rock/Sand/Clay)
has db xref: NLCD:31
in subset: envoPolar
in subset: nlcd2011
comment: According to the NLCD 2011, areas of barren land generally have less than 15% cover of vegetation. A specific threshold is not asserted in this definition.

Axiom
annotated source: area of barren land
annotated property: definition
annotated target: An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
has db xref: https://en.wikipedia.org/wiki/Exosphere
has db xref: https://en.wikipedia.org/wiki/Planetary_surface
has db xref: https://www.mrlc.gov/nlcd11_leg.php

aeroform
type: Class
equivalent class: Class
  intersection of: gaseous astronomical body part
  intersection of: Restriction
    on property: located in
    some values from: atmosphere
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: air
      union of: aerosol
subclass of: gaseous astronomical body part
subclass of: Restriction
  on property: located in
  some values from: atmosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: air
    union of: aerosol
definition: A part of an astronomical body which is primarily composed of a continuous volume of gaseous or aerosolised material held in shape by one or more environmental processes.
editor note: This may not need to be in the atmosphere, also note that "meteor" will do much of the same work.
in subset: envoAtmo
comment: Similar, in spirit, to landform. This class may need to be split into aerosols and 'pure' volumes of gas.

village
type: Class
subclass of: human settlement
definition: A village is a clustered human settlement or community, larger than a hamlet but smaller than a town, with a population ranging from a few hundred to a few thousand. Though often located in rural areas, the term urban village is also applied to certain urban neighbourhoods. Villages are normally permanent, with fixed dwellings; however, transient villages can occur. Further, the dwellings of a village are fairly close to one another, not scattered broadly over the landscape, as a dispersed settlement.
editor note: This class may be split. "urban village" doesn't sit well and prevents relations to village biomes.

Axiom
annotated source: village
annotated property: definition
annotated target: A village is a clustered human settlement or community, larger than a hamlet but smaller than a town, with a population ranging from a few hundred to a few thousand. Though often located in rural areas, the term urban village is also applied to certain urban neighbourhoods. Villages are normally permanent, with fixed dwellings; however, transient villages can occur. Further, the dwellings of a village are fairly close to one another, not scattered broadly over the landscape, as a dispersed settlement.
has db xref: https://en.wikipedia.org/wiki/Village

public infrastructure
type: Class
equivalent class: Class
  intersection of: human construction
  intersection of: Restriction
    on property: participates in
    some values from: usage of an environment for infrastructure and utilities
subclass of: human construction
subclass of: Restriction
  on property: participates in
  some values from: usage of an environment for infrastructure and utilities
definition: The system of public works in a country, state or region, including roads, utility lines and public buildings.
has broad synonym: infrastructure
comment: We label this as 'public infrastructure', as the OECD definition refers specifically to public constructed features. The parts of public infrastructure are not exhaustive and should be extended as needed.

Axiom
annotated source: public infrastructure
annotated property: definition
annotated target: The system of public works in a country, state or region, including roads, utility lines and public buildings.
has db xref: https://stats.oecd.org/glossary/detail.asp

public building
type: Class
subclass of: building
subclass of: Restriction
  on property: is part of
  some values from: public infrastructure
definition: A building which is publically accessible.
editor note: Created for SDGIO, we treat "public" as "publically accessible" where the semantics of access are dealt with in SDGIO.

material extraction process
type: Class
subclass of: environmental system process
subclass of: OBI_0000011
subclass of: Restriction
  on property: has part
  some values from: material transport process
subclass of: Restriction
  on property: has participant
  some values from: environmental material
definition: A planned process during which a portion of environmental material is removed from a material entity.
comment: Created for SDGIO and intended to be a more general form of resource extraction process.

mass gaseous flow
type: Class
subclass of: mass fluid flow
subclass of: Restriction
  on property: has participant
  some values from: gaseous environmental material
definition: A process whereby a large volume of gas moves due to a disequilibrium of physical forces.
has_related_synonym: wind
in subset: envoAtmo
in subset: envoPolar
comment: This class refers to all forms of "wind": from the familiar movement of air in the Earth's atmosphere to the solar wind. Use a subclass to be more precise.

Axiom
annotated source: mass gaseous flow
annotated property: definition
annotated target: A process whereby a large volume of gas moves due to a disequilibrium of physical forces.
has db xref: https://en.wikipedia.org/wiki/Wind

atmospheric wind
type: Class
subclass of: mass gaseous flow
subclass of: atmospheric process
has broad synonym: wind
has_related_synonym: A mass gaseous flow which occurrs in a planet's atmosphere due to internal pressure disequilibria.
in subset: envoAtmo
in subset: envoPolar

Axiom
annotated source: atmospheric wind
annotated property: has_related_synonym
annotated target: A mass gaseous flow which occurrs in a planet's atmosphere due to internal pressure disequilibria.
has db xref: https://en.wikipedia.org/wiki/Wind

gaseous environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001547
subclass of: fluid environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001547
definition: A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
editor note: This class is to be populated by inference.
has narrow synonym: gas

Axiom
annotated source: gaseous environmental material
annotated property: definition
annotated target: A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
has db xref: http://www.merriam-webster.com/dictionary/gas

plasma
type: Class
subclass of: fluid environmental material
definition: A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields.
editor note: An NTR for `quality of a plasma` has been posted on the PATO tracker: https://github.com/pato-ontology/pato/issues/88

Axiom
annotated source: plasma
annotated property: definition
annotated target: A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields.
has db xref: http://www.merriam-webster.com/dictionary/plasma
has db xref: https://en.wikipedia.org/wiki/Plasma_%28physics%29

astronomical body
type: Class
subclass of: astronomical object
definition: An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
has_related_synonym: celestial body
in subset: envoAstro
comment: Astronomical bodies are usually cohesive, thus the use of the term 'object' sensu BFO 'object'.

Axiom
annotated source: astronomical body
annotated property: definition
annotated target: An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
has db xref: https://en.wikipedia.org/wiki/Astronomical_object

planet
type: Class
subclass of: astronomical body
definition: A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
in subset: envoAstro
in subset: envoPolar
comment: Considerable debate on the definition of planet exists.

Axiom
annotated source: planet
annotated property: definition
annotated target: A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
has db xref: http://solarsystem.nasa.gov/planets/whatisaplanet
has db xref: https://en.wikipedia.org/wiki/Planet

star
type: Class
subclass of: astronomical body
subclass of: mass of environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: plasma
definition: An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
editor note: Add qualities such as spherical. Request NTRs if not available in PATO.
in subset: envoAstro
in subset: envoPolar

Axiom
annotated source: star
annotated property: definition
annotated target: An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
has db xref: https://en.wikipedia.org/wiki/Star

astronomical object
type: Class
subclass of: object
subclass of: Restriction
  on property: has part
  some values from: astronomical body
subclass of: Restriction
  on property: has quality
  some values from: geodiversity
subclass of: Restriction
  on property: surrounded by
  some values from: outer space
definition: An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
has_related_synonym: celestial object
in subset: envoAstro
comment: If there is only one astronomical body involved, this class is equivalent to ENVO:01000799. This may be problematic with reasoning, but it seems to be true to the rather fuzzy definitions found thus far.

Axiom
annotated source: astronomical object
annotated property: definition
annotated target: An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
has db xref: https://en.wikipedia.org/wiki/Astronomical_object

astronomical body part
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: is part of
    some values from: astronomical body
subclass of: material entity
subclass of: Restriction
  on property: is part of
  some values from: astronomical body
definition: A material part of an astronomical body.
editor note: Also note that some astronomical body parts (ABPs) may have fiat boundaries: if there's strong debate about where an ABP begins or ends (over and above fuzzy boundaries), with different official classifications setting different thresholds or limits, axiomatise the class with fiat boundaries of the appropriate dimension.
editor note: Note that material entities may have immaterial entities (e.g. sites) as parts.
editor note: This class includes material parts of astronomical bodies. Immaterial parts, such as magnetospheres, are represented as sites under the influence of magnetic fields.Please post countercases in the ENVO tracker for revision of this hierarchy if needed.
in subset: envoAstro
in subset: envoPolar
comment: Material parts of astronomical bodies generally have boundaries formed by discontinuities in qualities, composition, or other physical characterisitcs. These boundaries are sometimes sharp, and sometimes diffuse, with different classification systems and communities declaring varying thresholds (e.g. for where a shoreline, forest, or other entity begins and ends). However, some boundaries are declared by fiat - that is, by arbitrary human convention or decree - particularly by regulatory or other authorities and communities of practice. The classes in this hierarchy attempt to offer generalisable definitions that allow multiple classfiication systems to map to and interoperate through. If desired, we can create classes that declare thresholds used by a given authority or community under the more generic ones, annotated with source information.

solid environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001546
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001546
definition: An environmental material which is in a solid state.
comment: This is a defined class: its subclasses will not be asserted, but filled by inference.

liquid environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001548
subclass of: fluid environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001548
definition: An environmental material which is in a liquid state.
in subset: envoPolar
comment: This is a defined class: most of its subclasses will not be asserted, but filled by inference.

biosphere
type: Class
subclass of: astronomical body part
subclass of: Restriction
  on property: has part
  some values from: PCO_0000000
definition: An astronomical body part which includes all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
editor note: Whether this class should be grouped with classes such as "hydrosphere" and "cryosphere" requires some discussion.
in subset: envoAstro
in subset: envoPolar
comment: The gravitational sphere of influence referenced in this class' definition is the Hill sphere: a region in which an object dominates the attraction of satellites despite gravitational perturbations.

Axiom
annotated source: biosphere
annotated property: definition
annotated target: An astronomical body part which includes all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
has db xref: http://www.biology-online.org/dictionary/Biosphere
has db xref: https://en.wikipedia.org/wiki/Biosphere

hydrosphere
type: Class
subclass of: liquid astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
definition: An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
in subset: envoAstro
in subset: envoPolar
comment: This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class.

Axiom
annotated source: hydrosphere
annotated property: definition
annotated target: An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
has db xref: https://en.wikipedia.org/wiki/Hydrosphere

pedosphere
type: Class
subclass of: astronomical body part
subclass of: Restriction
  on property: overlaps
  some values from: atmosphere
subclass of: Restriction
  on property: overlaps
  some values from: lithosphere
subclass of: Restriction
  on property: overlaps
  some values from: biosphere
subclass of: Restriction
  on property: overlaps
  some values from: hydrosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: soil
definition: An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere.
in subset: envoAstro
comment: This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class.

Axiom
annotated source: pedosphere
annotated property: definition
annotated target: An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere.
has db xref: https://en.wikipedia.org/wiki/Pedosphere

humid air
type: Class
subclass of: air
subclass of: Restriction
  on property: has increased levels of
  some values from: water vapour
subclass of: Restriction
  on property: has quality
  some values from: PATO_0015010
definition: Air which has increased levels of water vapour.

water vapour saturated air
type: Class
subclass of: humid air
definition: Air which has a partial pressure of water vapour equal or near equal to its equilibrium vapor pressure at a given temperature.
has exact synonym: water-vapour-saturated air
has_related_synonym: wet air
comment: "Near equal" is meant to reflect that there will be fluctuations around the equilibrium point.

water-based rainfall
type: Class
subclass of: hydrological precipitation process
subclass of: Restriction
  on property: has participant
  some values from: water vapour saturated air
subclass of: Restriction
  on property: has participant
  some values from: raindrop
definition: A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity.
has broad synonym: rain fall
has broad synonym: rainfall
has_related_synonym: rain
in subset: envoPolar
comment: This is the process which typically happens on Earth. Other planets may have different liquids involved in the process.

Axiom
annotated source: water-based rainfall
annotated property: definition
annotated target: A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity.
has db xref: https://en.wikipedia.org/wiki/Rain

droplet
type: Class
subclass of: mass of liquid
definition: A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.
has_related_synonym: drop
comment: No attempt is made to differentiate between drops and droplets. This may be added, if requested.

Axiom
annotated source: droplet
annotated property: definition
annotated target: A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.
has db xref: Drop (liquid)

raindrop
type: Class
subclass of: droplet
subclass of: Restriction
  on property: formed as result of
  some values from: condensation process
definition: A droplet formed by condensation of vapour in an atmosphere and which is sufficiently massive to overcome atmospheric resistance and fall to a planetary surface due to gravity.

water droplet
type: Class
equivalent class: Class
  intersection of: droplet
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid water
subclass of: droplet
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
definition: A droplet of water
editor note: A defined class which should be filled by inference.

water raindrop
type: Class
subclass of: raindrop
subclass of: water droplet
has broad synonym: raindrop
comment: This is the class intended for use when describing raindrops on Earth. These typically have a diamter of 0.1 to 9 millimetres.

crystal
type: Class
subclass of: solid environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001411
definition: A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions.
comment: This class refers to a portion of crystal and not an individual crystal.

Axiom
annotated source: crystal
annotated property: definition
annotated target: A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions.
has db xref: https://en.wikipedia.org/wiki/Crystal

water ice crystal
type: Class
subclass of: crystal
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
definition: A crystal which is primarily composed of water ice.
has broad synonym: ice crystal
has db xref: Ice
in subset: envoPolar
comment: Any one of a number of macroscopic, crystalline forms in which ice appears, including hexagonal columns, hexagonal platelets, dendritic crystals, ice needles, and combinations of these forms. The crystal lattice of ice is hexagonal in its symmetry under most atmospheric conditions.

Axiom
annotated source: water ice crystal
annotated property: comment
annotated target: Any one of a number of macroscopic, crystalline forms in which ice appears, including hexagonal columns, hexagonal platelets, dendritic crystals, ice needles, and combinations of these forms. The crystal lattice of ice is hexagonal in its symmetry under most atmospheric conditions.
has db xref: https://orcid.org/0000-0003-4808-4736

temperate marginal sea biome
type: Class
subclass of: marginal sea biome
subclass of: temperate biome
definition: A marginal sea biome which is located in a region with a temperate climate.
editor note: A component of the WWF Temperate Shelf and seas ecoregions grouping
in subset: wwfBiome

marine upwelling biome
type: Class
subclass of: marine biome
definition: A marine biome which contains communities adapted to living in an environment determined by an upwelling process.

temperate marine upwelling biome
type: Class
subclass of: marine upwelling biome
subclass of: temperate biome
definition: A marine upwelling biome which is located in a region subject to temperate climate patterns.
in subset: wwfBiome

area of scrub
type: Class
subclass of: bush area
subclass of: Restriction
  on property: is part of
  some values from: scrubland area
subclass of: Restriction
  on property: adjacent to
  some values from: atmospheric boundary layer
definition: An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
editor note: As noted in Wikipedia: "Because the criteria are matters of degree rather than of kind, the definition of a subshrub is not sharply distinguishable from that of a shrub"
alternative term: shrub/scrub
has db xref: NLCD:52
has exact synonym: area of shrub
in subset: nlcd2011
comment: According to the NLCD 2011, areas of scrub or shrub are dominated by shrubs; less than 5 meters tall with shrub canopy typically greater than 20% of total vegetation. This class includes true shrubs, young trees in an early successional stage or trees stunted from environmental conditions. Such thresholds - which are themselves fuzzy - are not asserted in this definition.

Axiom
annotated source: area of scrub
annotated property: definition
annotated target: An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
has db xref: http://dx.doi.org/10.1016/j.rse.2015.07.014
has db xref: https://en.wikipedia.org/wiki/Exosphere
has db xref: https://en.wikipedia.org/wiki/Planetary_surface
has db xref: https://en.wikipedia.org/wiki/Subshrub
has db xref: https://www.mrlc.gov/nlcd11_leg.php

Axiom
annotated source: area of scrub
annotated property: editor note
annotated target: As noted in Wikipedia: "Because the criteria are matters of degree rather than of kind, the definition of a subshrub is not sharply distinguishable from that of a shrub"
has db xref: https://en.wikipedia.org/wiki/Subshrub

precipitation process
type: Class
subclass of: material transport process
definition: A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.

Axiom
annotated source: precipitation process
annotated property: definition
annotated target: A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
has db xref: https://en.wikipedia.org/wiki/Precipitation_%28chemistry%29
comment: https://en.wikipedia.org/wiki/Precipitation

area of developed open space
type: Class
subclass of: anthropised terrestrial environmental zone
subclass of: Restriction
  on property: is part of
  some values from: dense settlement biome
subclass of: Restriction
  on property: adjacent to
  some values from: atmospheric boundary layer
definition: An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
editor note: This class is in need of refinement, particularly in linking to other entities in the ontology. This would be helped by more clear listings of entities included in this classification. However, the class is suitable for use in annotating remotely sensed land types.
alternative term: developed, open space
has db xref: NLCD:21
in subset: nlcd2011
comment: According to the NLCD 2011, areas of developed open space are dominated by vegetation such as lawn grasses and include large-lot single-family housing units, parks, golf courses. Further, it is asserted that "impervious surfaces", most likely referring to concrete and related substances, cover less than 20% of the area. Such thresholds - which are themselves fuzzy - are not asserted in this definition.

Axiom
annotated source: area of developed open space
annotated property: definition
annotated target: An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
has db xref: https://en.wikipedia.org/wiki/Exosphere
has db xref: https://en.wikipedia.org/wiki/Planetary_surface
has db xref: https://www.mrlc.gov/nlcd11_leg.php

area of sedge- and forb-dominated herbaceous vegetation
type: Class
subclass of: vegetated area
subclass of: Restriction
  on property: adjacent to
  some values from: atmospheric boundary layer
definition: An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
editor note: This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types.
alternative term: sedge/herbaceous
has db xref: NLCD:72
in subset: nlcd2011
comment: According to the NLCD 2011, at least 80% of these areas are covered by sedge or forbs. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD description also notes that land covered by sedge tundra and sedge tussock tundra are subsumed in this category. The original definition notes that this is intended as an "Alaska only" category.

Axiom
annotated source: area of sedge- and forb-dominated herbaceous vegetation
annotated property: definition
annotated target: An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
has db xref: https://en.wikipedia.org/wiki/Exosphere
has db xref: https://en.wikipedia.org/wiki/Planetary_surface
has db xref: https://www.mrlc.gov/nlcd11_leg.php

area of gramanoid or herbaceous vegetation
type: Class
subclass of: grassland area
subclass of: Restriction
  on property: adjacent to
  some values from: atmospheric boundary layer
definition: An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
editor note: This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types.
alternative term: grassland/herbaceous
has db xref: NLCD:71
in subset: nlcd2011
comment: According to the NLCD 2011, at least 80% of these areas are covered by grasslands or non-woody, herbaceous plants. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD description also notes that, while no "intensive" management such as tilling is performed in these areas, they may be used for grazing.

Axiom
annotated source: area of gramanoid or herbaceous vegetation
annotated property: definition
annotated target: An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
has db xref: https://en.wikipedia.org/wiki/Exosphere
has db xref: https://en.wikipedia.org/wiki/Planetary_surface
has db xref: https://www.mrlc.gov/nlcd11_leg.php

snowfall
type: Class
subclass of: hydrological precipitation process
subclass of: Restriction
  on property: has participant
  some values from: snow
definition: A hydrological process in which irregular aggregates of snow fall to the surface of an astronomical body.
editor note: This is currently bound to water-based snow on Earth, may need revisions for interplanetary applications
created by: https://orcid.org/0000-0002-0337-8610
created by: https://orcid.org/0000-0002-2282-7215
created by: https://orcid.org/0000-0002-2908-3327
created by: https://orcid.org/0000-0002-3410-4655
created by: https://orcid.org/0000-0002-4366-3088
created by: https://orcid.org/0000-0003-0632-7576
created by: https://orcid.org/0000-0003-4808-4736
creation date: 2021-04-14T18:57:18.275Z
has db xref: Snowfall
has exact synonym: snow fall
in subset: environmental_hazards
in subset: envoCryo
in subset: envoPolar

residential building
type: Class
subclass of: human house
definition: A human house which serves as a long-term shelter for its inhabitants and within which they store personal property.
editor note: This is under "human house" due to the broad definition of "house".
comment: This term is not to be used for hotels, hostels, inns and the like, which provides shorter-term stays.

natural environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Class
    complement of: Restriction
      on property: formed as result of
      some values from: anthropisation
subclass of: environmental system
definition: An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
alternative term: non-anthropised environment
alternative term: non-anthropized environment
comment: In most contexts, 'natural' is defined by the lack of intervention or influence by humans and their activities. On Earth, most environments fall on a scale between completely natural and anthropised.

Axiom
annotated source: natural environment
annotated property: definition
annotated target: An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
has db xref: https://en.wikipedia.org/wiki/Anthropization
has db xref: https://en.wikipedia.org/wiki/Natural_environment

anthropisation
type: Class
equivalent class: Class
  intersection of: anthropogenic ecosystem conversion process
  intersection of: Restriction
    on property: has input
    some values from: natural environment
  intersection of: Restriction
    on property: has output
    some values from: anthropogenic environment
subclass of: anthropogenic ecosystem conversion process
subclass of: Restriction
  on property: has input
  some values from: natural environment
subclass of: Restriction
  on property: has output
  some values from: anthropogenic environment
definition: A process during which a natural environmental system is altered by human action.
has exact synonym: anthropization
comment: An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action.

Axiom
annotated source: anthropisation
annotated property: definition
annotated target: A process during which a natural environmental system is altered by human action.
has db xref: https://en.wikipedia.org/wiki/Anthropization

Axiom
annotated source: anthropisation
annotated property: comment
annotated target: An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action.
has db xref: https://en.wikipedia.org/wiki/Anthropization

terrestrial planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: rock
      union of: metallic material
subclass of: planet
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: metallic material
definition: A planet that is composed primarily of silicate rocks or metals.
has exact synonym: rocky planet
has exact synonym: telluric planet
has_related_synonym: Earth-like planet
in subset: envoAstro

Axiom
annotated source: terrestrial planet
annotated property: definition
annotated target: A planet that is composed primarily of silicate rocks or metals.
has db xref: https://en.wikipedia.org/wiki/Terrestrial_planet

animal trap
type: Class
subclass of: manufactured product
definition: A manufactured product which is designed to catch and hold animals.
in subset: envoCesab

Axiom
annotated source: animal trap
annotated property: definition
annotated target: A manufactured product which is designed to catch and hold animals.
has db xref: http://www.thefreedictionary.com/trap

mass liquid flow
type: Class
subclass of: mass fluid flow
subclass of: Restriction
  on property: has participant
  some values from: liquid environmental material
definition: A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
in subset: envoPolar
comment: This class can refer to the flow of any material in a liquid phase.

Axiom
annotated source: mass liquid flow
annotated property: definition
annotated target: A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
has db xref: https://en.wikipedia.org/wiki/Wind

water flow process
type: Class
equivalent class: Class
  intersection of: material transport process
  intersection of: Restriction
    on property: has participant
    some values from: liquid water
subclass of: hydrological process
subclass of: material transport process
subclass of: Restriction
  on property: has participant
  some values from: liquid water
definition: A material transport process during which a volume of liquid water is transported due to a disequilibria in physical forces.
in subset: environmental_hazards

technosphere
type: Class
subclass of: astronomical body part
subclass of: Restriction
  on property: overlaps
  some values from: biosphere
subclass of: Restriction
  on property: composed primarily of
  some values from: human construction
subclass of: Restriction
  on property: composed primarily of
  some values from: manufactured product
definition: A part of an astronomical body which includes, as parts, all the entities which have been constructed or manufactured by humans or their technology and which are within the gravitational sphere of influence of that body.
in subset: envoAstro
comment: The gravitational sphere of influence referenced in this class' definition is the Hill sphere: a region in which an object dominates the attraction of satellites despite gravitational perturbations.

Axiom
annotated source: technosphere
annotated property: definition
annotated target: A part of an astronomical body which includes, as parts, all the entities which have been constructed or manufactured by humans or their technology and which are within the gravitational sphere of influence of that body.
has db xref: http://dx.doi.org/10.1177/2053019616677743
has db xref: http://www.yourdictionary.com/technosphere
has db xref: https://www.sciencedaily.com/releases/2016/11/161130085021.htm

plumbing fixture
type: Class
subclass of: manufactured product
definition: An exchangeable device which can be connected to a plumbing system to deliver and drain water.

Axiom
annotated source: plumbing fixture
annotated property: definition
annotated target: An exchangeable device which can be connected to a plumbing system to deliver and drain water.
has db xref: https://en.wikipedia.org/wiki/Plumbing_fixture

manufacturing process
type: Class
equivalent class: Class
  intersection of: OBI_0000011
  intersection of: Restriction
    on property: has output
    some values from: manufactured product
subclass of: anthropogenic environmental process
subclass of: OBI_0000011
subclass of: Restriction
  on property: has part
  some values from: anthropisation
subclass of: Restriction
  on property: has output
  some values from: manufactured product
definition: A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation.
comment: The term may refer to a range of human activity, from handicraft to high tech, but is most commonly applied to industrial production, in which raw materials are transformed into finished goods on a large scale.

Axiom
annotated source: manufacturing process
annotated property: definition
annotated target: A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation.
has db xref: https://en.wikipedia.org/wiki/Manufacturing

Axiom
annotated source: manufacturing process
annotated property: comment
annotated target: The term may refer to a range of human activity, from handicraft to high tech, but is most commonly applied to industrial production, in which raw materials are transformed into finished goods on a large scale.
has db xref: https://en.wikipedia.org/wiki/Manufacturing

human-directed construction process
type: Class
equivalent class: Class
  intersection of: OBI_0000011
  intersection of: Restriction
    on property: has output
    some values from: human construction
subclass of: anthropogenic environmental process
subclass of: OBI_0000011
subclass of: Restriction
  on property: has part
  some values from: anthropisation
subclass of: Restriction
  on property: has part
  some values from: material transport process
subclass of: Restriction
  on property: has part
  some values from: material transformation process
subclass of: Restriction
  on property: has output
  some values from: human construction
definition: An process during which natural or manufactured materials and products are processed and arranged by humans or their technology into structures.
editor note: The nature of "structures" must be further specified.

environmental system determined by a quality
type: Class
subclass of: environmental system
definition: An environmental system which is determined by materials bearing roughly homogeneous qualities.
comment: Organisational class. Not intended for annotation.

environmental system determined by a material
type: Class
subclass of: environmental system
definition: An environmental system within which an environmental material strongly influences the system's composition and properties.
comment: Organisational class. Not intended for annotation. Subclasses describe environments which are usually permeated by an environmental material. They may also describe environments which are sufficiently close to a material, that their dynamics are strongly influenced by it (e.g. a patch of forest ecosystem neighbouring a uranium dump).

environmental system determined by an organism
type: Class
subclass of: environmental system
definition: An environmental system which is determined by a living organism.
has_related_synonym: host-associated environment
in subset: envoEmpo
in subset: envoOmics

plant-associated environment
type: Class
subclass of: environmental system determined by an organism
definition: An environmental system determined by a green plant.
alternative term: Plant
has broad synonym: plant environment
has exact synonym: Viridiplantae-associated environment
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: plant-associated environment
annotated property: alternative term
annotated target: Plant
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

animal-associated environment
type: Class
subclass of: environmental system determined by an organism
definition: An environmental system determined by an animal.
alternative term: Animal
has broad synonym: animal environment
has exact synonym: Metazoan-associated environment
in subset: envoEmpo
in subset: envoMeo
in subset: envoOmics

Axiom
annotated source: animal-associated environment
annotated property: alternative term
annotated target: Animal
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

meteor
type: Class
equivalent class: Class
  intersection of: object
  intersection of: Restriction
    on property: located in
    some values from: atmosphere
subclass of: object
subclass of: Restriction
  on property: located in
  some values from: atmosphere
definition: A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
in subset: envoAtmo

Axiom
annotated source: meteor
annotated property: definition
annotated target: A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
has db xref: https://cloudatlas.wmo.int/other-meteors.html

hydrometeor
type: Class
equivalent class: Class
  intersection of: meteor
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: liquid water
      union of: water ice
subclass of: meteor
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: liquid water
    union of: water ice
definition: A meteor which is primarily composed of water.
in subset: envoAtmo

Axiom
annotated source: hydrometeor
annotated property: definition
annotated target: A meteor which is primarily composed of water.
has db xref: https://cloudatlas.wmo.int/other-meteors.html

lithometeor
type: Class
equivalent class: Class
  intersection of: meteor
  intersection of: Restriction
    on property: composed primarily of
    some values from: rock
subclass of: piece of rock
subclass of: meteor
subclass of: Restriction
  on property: derives from
  some values from: meteoroid
definition: A meteor which is primarily composed of rock.
in subset: envoAtmo

natural lake
type: Class
equivalent class: Class
  intersection of: lake
  intersection of: Class
    complement of: Restriction
      on property: formed as result of
      some values from: anthropisation
subclass of: lake
definition: A lake which has formed as the result of processes that are not or are only minimally driven by human activity.
editor note: This class is to be filled by inference.

radiation
type: Class
subclass of: energy transfer process
subclass of: Restriction
  on property: has participant
  some values from: subatomic particle
subclass of: Restriction
  on property: has participant
  some values from: environmental material
definition: A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
editor note: Requires addition of waves for full axiomatisation. This should be linked to "subatomic particle" with an "or". Note that ENVO represents space as an environmental material (a hard vacuum with sparse material inclusions).
in subset: environmental_hazards
in subset: envoAstro

Axiom
annotated source: radiation
annotated property: definition
annotated target: A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
has db xref: https://en.wikipedia.org/wiki/Radiation

particle radiation
type: Class
subclass of: radiation
definition: A radiation process during which energy is transmitted or emitted by means of fast-moving subatomic particles.
in subset: environmental_hazards
in subset: envoAstro

Axiom
annotated source: particle radiation
annotated property: definition
annotated target: A radiation process during which energy is transmitted or emitted by means of fast-moving subatomic particles.
has db xref: https://en.wikipedia.org/wiki/Particle_radiation

electromagnetic radiation
type: Class
subclass of: radiation
definition: A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
has exact synonym: EM radiation
in subset: environmental_hazards
in subset: envoAstro
comment: Note that this class is concerned only with active radiative processes: static electric and magnetic fields are not inlcuded. All electromagnetic radiation carries radiant energy.

Axiom
annotated source: electromagnetic radiation
annotated property: definition
annotated target: A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
has db xref: https://en.wikipedia.org/wiki/Electromagnetic_radiation

saline environment
type: Class
subclass of: high osmolarity environment
subclass of: environmental system determined by a material
definition: An environment which is determined by materials which bear significant concentrations of salts.
alternative term: Saline
in subset: envoEmpo
comment: The thresholds for "significant" concentrations of salts vary widely and thus no committment is made in this class. Subclasses with more explicit thresholds can be made upon request.

Axiom
annotated source: saline environment
annotated property: alternative term
annotated target: Saline
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

soil environment
type: Class
subclass of: astronomical body part
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
definition: An environmental system which has its properties and dynamics determined by soil.
alternative term: Soil (non-saline)
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: soil environment
annotated property: alternative term
annotated target: Soil (non-saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

sediment environment
type: Class
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
definition: An environmental system which has its properties and dynamics determined by sediment.
in subset: envoEmpo
in subset: envoOmics

aerosol environment
type: Class
subclass of: environmental system determined by a quality
subclass of: environmental system determined by a material
definition: An environmental system which has its properties and dynamics determined by an aerosol.
in subset: envoEmpo
in subset: envoOmics

saline aerosol environment
type: Class
subclass of: saline environment
subclass of: aerosol environment
definition: An environmental system which has its properties and dynamics determined by a saline aerosol.
alternative term: Aerosol (saline)
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: saline aerosol environment
annotated property: alternative term
annotated target: Aerosol (saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
comment: seaspray or other aerosolized saline material (>5 psu)

non-saline aerosol environment
type: Class
subclass of: aerosol environment
definition: An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes.
alternative term: Aerosol (non-saline)
in subset: envoEmpo
in subset: envoOmics

Axiom
annotated source: non-saline aerosol environment
annotated property: alternative term
annotated target: Aerosol (non-saline)
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
comment: aerosolized dust or liquid

environment associated with an animal part or small animal
type: Class
subclass of: ecosystem
definition: An environmental system determined by part of a living or dead animal, or a whole small animal.
alternative term: Animal corpus
in subset: envoEmpo
in subset: envoMeo
in subset: envoOmics

Axiom
annotated source: environment associated with an animal part or small animal
annotated property: alternative term
annotated target: Animal corpus
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

environment associated with a plant part or small plant
type: Class
subclass of: ecosystem
definition: An environmental system determined by part of a living or dead plant, or a whole small plant.
alternative term: Plant corpus
in subset: envoEmpo
in subset: envoMeo
in subset: envoOmics

Axiom
annotated source: environment associated with a plant part or small plant
annotated property: alternative term
annotated target: Plant corpus
has db xref: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/

meteoroid
type: Class
subclass of: astronomical body
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000587
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: metallic material
definition: An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
in subset: envoAstro

Axiom
annotated source: meteoroid
annotated property: definition
annotated target: An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
has db xref: https://en.wikipedia.org/wiki/Meteoroid

metallic material
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: has quality
  some values from: PATO_0000963
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: PATO_0001546
    union of: PATO_0001548
subclass of: Restriction
  on property: has role
  some values from: electron donor
subclass of: Restriction
  on property: composed primarily of
  some values from: metal atom
definition: A material which is composed primarily of one or more pure metals and which shows their properties.
editor note: Far more axiomatisation can be done should the qualities of metals be added to PATO or a similar quality ontology. However, note that there are many exceptions to the typical qualities of the majority of metals.
has_related_synonym: metal
comment: While this class allows for some degree of contamination by non-metal substances, the material represented should show at least some of the typical features of a pure metal: hardness (except for liquid metals), opacity, lustre, malleability, fusibility, ductile and good electrical and thermal conductivity.

Axiom
annotated source: metallic material
annotated property: definition
annotated target: A material which is composed primarily of one or more pure metals and which shows their properties.
comment: https://en.wikipedia.org/wiki/Metal

particulate matter formation process
type: Class
subclass of: material transformation process
subclass of: Restriction
  on property: has output
  some values from: particulate environmental material
definition: A process during which microscopic solid or liquid objects are formed.
has_related_synonym: particle formation

Axiom
annotated source: particulate matter formation process
annotated property: definition
annotated target: A process during which microscopic solid or liquid objects are formed.
has db xref: https://en.wikipedia.org/wiki/Particulates

atmospheric aerosol formation
type: Class
equivalent class: Class
  intersection of: aerosol formation process
  intersection of: Restriction
    on property: occurs in
    some values from: atmosphere
subclass of: aerosol formation process
subclass of: atmospheric process
definition: An aerosol formation process which occurs in an atmosphere.
has exact synonym: atmospheric aerosol formation
in subset: envoAtmo

Axiom
annotated source: atmospheric aerosol formation
annotated property: definition
annotated target: An aerosol formation process which occurs in an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Particulates

formation of a solid aerosol in an atmosphere
type: Class
equivalent class: Class
  intersection of: atmospheric aerosol formation
  intersection of: Restriction
    on property: has output
    some values from: aerosolised solids
subclass of: atmospheric aerosol formation
subclass of: Restriction
  on property: has output
  some values from: aerosolised solids
definition: A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
has_related_synonym: formation of solid particles in an atmosphere
in subset: envoAtmo

Axiom
annotated source: formation of a solid aerosol in an atmosphere
annotated property: definition
annotated target: A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Particulates

formation of a liquid aerosol in an atmosphere
type: Class
equivalent class: Class
  intersection of: atmospheric aerosol formation
  intersection of: Restriction
    on property: has output
    some values from: aerosolised liquids
subclass of: atmospheric aerosol formation
subclass of: Restriction
  on property: has output
  some values from: aerosolised liquids
definition: A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
has_related_synonym: formation of liquid droplets in an atmosphere
has_related_synonym: formation of liquid particles in an atmosphere
in subset: envoAtmo

Axiom
annotated source: formation of a liquid aerosol in an atmosphere
annotated property: definition
annotated target: A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Particulates

aerosolised liquids
type: Class
equivalent class: Class
  intersection of: aerosol
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: has quality
        some values from: PATO_0001548
subclass of: aerosol
subclass of: fluid environmental material
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: PATO_0001546
    union of: PATO_0001548
subclass of: Restriction
  on property: surrounded by
  some values from: air
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001548
definition: An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
has db xref: SWEETRealm:Aerosol
has exact synonym: liquid aerosol
in subset: envoAtmo

Axiom
annotated source: aerosolised liquids
annotated property: definition
annotated target: An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
has db xref: https://en.wikipedia.org/wiki/Aerosol

aerosolised solids
type: Class
equivalent class: Class
  intersection of: aerosol
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      intersection of: environmental material
      intersection of: Restriction
        on property: has quality
        some values from: PATO_0001546
subclass of: aerosol
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: PATO_0001546
    union of: PATO_0001548
subclass of: Restriction
  on property: surrounded by
  some values from: air
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001546
definition: An aerosol which has non-gaseous parts that are primarily composed of solid particles.
has db xref: SWEETRealm:Aerosol
has exact synonym: solid aerosol
in subset: envoAtmo

Axiom
annotated source: aerosolised solids
annotated property: definition
annotated target: An aerosol which has non-gaseous parts that are primarily composed of solid particles.
has db xref: https://en.wikipedia.org/wiki/Aerosol

formation of a solid aerosol from gaseous material in an atmosphere
type: Class
equivalent class: Class
  intersection of: formation of a solid aerosol in an atmosphere
  intersection of: Restriction
    on property: has input
    some values from: gaseous environmental material
  intersection of: Restriction
    on property: has output
    some values from: aerosolised solids
subclass of: formation of a solid aerosol in an atmosphere
subclass of: Restriction
  on property: has input
  some values from: gaseous environmental material
definition: A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
has broad synonym: atmospheric formation of a solid aerosol
has broad synonym: formation of a solid aerosol in an atmosphere
has broad synonym: formation of a solid aerosol in the atmosphere
has_related_synonym: formation of solid particles from gaseous material in an atmosphere
in subset: envoAtmo

Axiom
annotated source: formation of a solid aerosol from gaseous material in an atmosphere
annotated property: definition
annotated target: A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Particulates

formation of a liquid aerosol from gaseous material in an atmosphere
type: Class
equivalent class: Class
  intersection of: formation of a liquid aerosol in an atmosphere
  intersection of: Restriction
    on property: has input
    some values from: gaseous environmental material
  intersection of: Restriction
    on property: has output
    some values from: aerosolised liquids
subclass of: formation of a liquid aerosol in an atmosphere
subclass of: Restriction
  on property: has input
  some values from: gaseous environmental material
definition: A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
has exact synonym: atmospheric formation of a liquid aerosol
has exact synonym: formation of a liquid aerosol in an atmosphere
has exact synonym: formation of a liquid aerosol in the atmosphere
has_related_synonym: formation of liquid droplets from gaseous material in an atmosphere
has_related_synonym: formation of liquid particles from gaseous material in an atmosphere
in subset: envoAtmo

Axiom
annotated source: formation of a liquid aerosol from gaseous material in an atmosphere
annotated property: definition
annotated target: A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Particulates

tectonic movement
type: Class
subclass of: material transport process
subclass of: Restriction
  on property: has participant
  some values from: tectonic plate
definition: A process during which pieces of a planetary crust and uppermost mantle move.

Axiom
annotated source: tectonic movement
annotated property: definition
annotated target: A process during which pieces of a planetary crust and uppermost mantle move.
has db xref: https://en.wikipedia.org/wiki/Plate_tectonics
comment: https://en.wikipedia.org/wiki/List_of_tectonic_plates

tectonic plate
type: Class
subclass of: solid astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: lithosphere
subclass of: Restriction
  on property: has quality
  some values from: PATO_0002253
subclass of: Restriction
  on property: overlaps
  some values from: tectonic plate boundary
definition: A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities.

Axiom
annotated source: tectonic plate
annotated property: definition
annotated target: A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities.
has db xref: https://en.wikipedia.org/wiki/List_of_tectonic_plates

tectonic plate boundary
type: Class
subclass of: environmental zone
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001199
subclass of: Restriction
  on property: overlaps
  some values from: tectonic plate
subclass of: Restriction
  on property: formed as result of
  some values from: tectonic movement
subclass of: Restriction
  on property: has component
  min qualified cardinality: 2
  on class: tectonic plate
definition: A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere.

Axiom
annotated source: tectonic plate boundary
annotated property: definition
annotated target: A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere.
has db xref: https://en.wikipedia.org/wiki/Plate_tectonics

ecosystem
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Class
    union of: Restriction
      on property: has part
      some values from: NCBITaxon_131567
    union of: Restriction
      on property: has part
      some values from: PCO_0000000
subclass of: environmental system
definition: An environmental system which includes both living and non-living components.
has db xref: LTER:173
comment: This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here.

Axiom
annotated source: ecosystem
annotated property: definition
annotated target: An environmental system which includes both living and non-living components.
has db xref: https://en.wikipedia.org/wiki/Ecosystem

Axiom
annotated source: ecosystem
annotated property: hasDbXref
annotated target: LTER:173
has db xref: https://vocab.lternet.edu/vocab/vocab/index.php

plant matter
type: Class
subclass of: organic material
subclass of: solid environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: PO_0025131
definition: Organic material which is primarily composed of plant structures, living or dead.

gas planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      intersection of: Class
        union of: hydrogen molecular entity
        union of: helium molecular entity
      intersection of: Restriction
        on property: has quality
        some values from: PATO_0001547
subclass of: planet
subclass of: mass of environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: astrogeological gas
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: Class
      union of: hydrogen molecular entity
      union of: helium molecular entity
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001547
definition: A planet which is primarily composed of hydrogen and helium.
in subset: envoAstro
comment: Gas giants are composed of about 90% hydrogen and helium. Jupiter and Saturn are examples of gas giants.

Axiom
annotated source: gas planet
annotated property: definition
annotated target: A planet which is primarily composed of hydrogen and helium.
has db xref: http://solarsystem.nasa.gov/planets/whatisaplanet
has db xref: https://en.wikipedia.org/wiki/List_of_planet_types
has db xref: https://en.wikipedia.org/wiki/Planet

ice
type: Class
subclass of: solid environmental material
definition: An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure.
comment: Note that ice may be formed at very high temperatures, due to gravitational effects and/or pressure.

ocean planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: planetary surface
      intersection of: Restriction
        on property: composed primarily of
        some values from: liquid water
subclass of: planet
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: planetary surface
    intersection of: Restriction
      on property: composed primarily of
      some values from: liquid water
definition: A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
editor note: An axiom to express that the planet has a 'substantial' proportion of its mass in the form of water wound enhance this class.
has exact synonym: aquaplanet
has exact synonym: panthalassic planet
has exact synonym: water world
in subset: envoAstro
comment: While this planetary form is still mostly theoretical, strong candidates exist such as the extrasolar planet GJ 1214 b and ocean planet candidate Kepler-22b.

Axiom
annotated source: ocean planet
annotated property: definition
annotated target: A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
has db xref: https://en.wikipedia.org/wiki/Ocean_planet

ice planet
type: Class
equivalent class: Class
  intersection of: planet
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: planetary surface
      intersection of: Restriction
        on property: composed primarily of
        some values from: ice
subclass of: planet
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: planetary surface
    intersection of: Restriction
      on property: composed primarily of
      some values from: ice
definition: A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
has exact synonym: cryoplanet
in subset: envoAstro
comment: While this planetary form is still mostly theoretical, strong candidates exist such as OGLE-2005-BLG-390Lb, OGLE-2013-BLG-0341L b and MOA-2007-BLG-192Lb. Pluto was considered an ice planet until its reclassification in 2006 CE. Surface temperatures of ice planets would have to be below 260 K (−13°C) if composed primarily of water, below 180 K (−93°C) if primarily composed of CO2 and ammonia, and below 80 K (−193°C) if composed primarily of methane.

Axiom
annotated source: ice planet
annotated property: definition
annotated target: A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
has db xref: https://en.wikipedia.org/wiki/Ice_planet

Axiom
annotated source: ice planet
annotated property: comment
annotated target: While this planetary form is still mostly theoretical, strong candidates exist such as OGLE-2005-BLG-390Lb, OGLE-2013-BLG-0341L b and MOA-2007-BLG-192Lb. Pluto was considered an ice planet until its reclassification in 2006 CE. Surface temperatures of ice planets would have to be below 260 K (−13°C) if composed primarily of water, below 180 K (−93°C) if primarily composed of CO2 and ammonia, and below 80 K (−193°C) if composed primarily of methane.
has db xref: https://en.wikipedia.org/wiki/Ice_planet

carbon dioxide ice
type: Class
equivalent class: Class
  intersection of: ice
  intersection of: Restriction
    on property: composed primarily of
    some values from: carbon dioxide
subclass of: ice
subclass of: Restriction
  on property: composed primarily of
  some values from: carbon dioxide
definition: Ice which is primarily composed of carbon dioxide.
has_related_synonym: dry ice
in subset: envoAstro

Axiom
annotated source: carbon dioxide ice
annotated property: definition
annotated target: Ice which is primarily composed of carbon dioxide.
has db xref: https://en.wikipedia.org/wiki/Ice

helium planet
type: Class
equivalent class: Class
  intersection of: gas planet
  intersection of: Restriction
    on property: has part
    some values from: Class
      intersection of: atmosphere
      intersection of: Restriction
        on property: composed primarily of
        some values from: helium molecular entity
subclass of: gas planet
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: atmosphere
    intersection of: Restriction
      on property: composed primarily of
      some values from: helium molecular entity
definition: A gas planet which has an atmosphere composed primarily of helium.
editor note: The placement of this class assumes that some traces of hydrogen are left in the atmosphere. If this is not the case, the axiom on gas planet must be updated.
in subset: envoAstro
comment: A helium planet might form via hydrogen evaporation from a gaseous planet orbiting close to a star. Low-mass white dwarfs may transition into objects which are essentially helium planets by hydrogen depletion through mass transfer to a massive object such as a neutron star. Gliese 436 b is a candidate helium planet.

Axiom
annotated source: helium planet
annotated property: definition
annotated target: A gas planet which has an atmosphere composed primarily of helium.
has db xref: https://en.wikipedia.org/wiki/Helium_planet

Axiom
annotated source: helium planet
annotated property: comment
annotated target: A helium planet might form via hydrogen evaporation from a gaseous planet orbiting close to a star. Low-mass white dwarfs may transition into objects which are essentially helium planets by hydrogen depletion through mass transfer to a massive object such as a neutron star. Gliese 436 b is a candidate helium planet.
has db xref: https://en.wikipedia.org/wiki/Helium_planet

volatile astrogeological material
type: Class
subclass of: environmental material
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: atmosphere
    union of: planetary crust
definition: A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
editor note: Add and axiomatise with moon and lunar crust
has_related_synonym: volatile
in subset: envoAstro
comment: Examples include nitrogen, water, carbon dioxide, ammonia, hydrogen, methane and sulfur dioxide. In astrogeology, these compounds, in their solid state, often comprise large proportions of the crusts of moons and dwarf planets.

Axiom
annotated source: volatile astrogeological material
annotated property: definition
annotated target: A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
has db xref: https://en.wikipedia.org/wiki/Volatiles

Axiom
annotated source: volatile astrogeological material
annotated property: comment
annotated target: Examples include nitrogen, water, carbon dioxide, ammonia, hydrogen, methane and sulfur dioxide. In astrogeology, these compounds, in their solid state, often comprise large proportions of the crusts of moons and dwarf planets.
has db xref: https://en.wikipedia.org/wiki/Volatiles

astrogeological gas
type: Class
subclass of: volatile astrogeological material
definition: An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
has_related_synonym: gas
in subset: envoAstro
comment: This is a term native to the fields of planetary science and astrophysics. Hydrogen has a boiling point of 20.271 Kelvin and a melting point of 13.99 Kelvin. Helium has a boiling point of 4.222 Kelvin and a melting point of 0.95 Kelvin.

Axiom
annotated source: astrogeological gas
annotated property: definition
annotated target: An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
has db xref: https://en.wikipedia.org/wiki/Volatiles

geodiversity
type: Class
subclass of: PATO_0001241
definition: A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
comment: Materials which are usually assessed when appraising geodiversity include minerals, rocks, sediments, fossils, soils and water. Landforms factored into geodiversity metrics typically include folds, faults, and other expressions of morphology or relations between units of earth material. Natural processes that are included in measures of geodiversity are those which either maintain or change materials or geoforms, including tectonics, sediment transport, and pedogenesis. Geodiversity does not usually factor in anthropogenic entities.

Axiom
annotated source: geodiversity
annotated property: definition
annotated target: A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
has db xref: https://en.wikipedia.org/wiki/Geodiversity

Axiom
annotated source: geodiversity
annotated property: comment
annotated target: Materials which are usually assessed when appraising geodiversity include minerals, rocks, sediments, fossils, soils and water. Landforms factored into geodiversity metrics typically include folds, faults, and other expressions of morphology or relations between units of earth material. Natural processes that are included in measures of geodiversity are those which either maintain or change materials or geoforms, including tectonics, sediment transport, and pedogenesis. Geodiversity does not usually factor in anthropogenic entities.

ecosystem fragment
type: Class
subclass of: ecosystem
subclass of: Restriction
  on property: formed as result of
  some values from: ecosystem fragmentation process
definition: An ecosystem which has been causally isolated from a larger ecosystem within which it was previously embedded, such that the direct exchange of materials, resources, and energy between these systems is severely or entirely curtailed.
comment: Often, ecosystem fragments are unable to sustain themselves without human intervention and management as they are not large enough to perform self-sustaining functions (e.g. nutrient recycling) or hold sufficient ecological resources such as genetic diversity of populations.

ecosystem fragmentation process
type: Class
equivalent class: Class
  intersection of: ecosystem process
  intersection of: Restriction
    on property: has input
    some values from: ecosystem
  intersection of: Restriction
    on property: results in formation of
    some values from: ecosystem fragment
subclass of: ecosystem process
subclass of: biological_process
subclass of: Restriction
  on property: has input
  some values from: ecosystem
subclass of: Restriction
  on property: results in formation of
  some values from: ecosystem fragment
definition: A process during which one or more parts of an ecosystem become causally isolated such that the direct flow or exchange of materials, resources, and energy between a given fragment and the remainder of the original system is severely curtailed or entirely halted.

Axiom
annotated source: ecosystem fragmentation process
annotated property: definition
annotated target: A process during which one or more parts of an ecosystem become causally isolated such that the direct flow or exchange of materials, resources, and energy between a given fragment and the remainder of the original system is severely curtailed or entirely halted.
has db xref: https://en.wikipedia.org/wiki/Ecosystem_decay
has db xref: https://en.wikipedia.org/wiki/Habitat_fragmentation
has db xref: https://en.wikipedia.org/wiki/Population_fragmentation

active ecosystem management process
type: Class
subclass of: anthropogenic modulatory intervention process
subclass of: anthropogenic environmental process
subclass of: Restriction
  on property: has participant
  some values from: ecosystem
definition: A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective.
has exact synonym: ecosystem management
has_related_synonym: Umweltmaßnahme @de
has_related_synonym: environmental management

Axiom
annotated source: active ecosystem management process
annotated property: definition
annotated target: A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective.
has db xref: https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-iv-habitatspecies-management-area

Axiom
annotated source: active ecosystem management process
annotated property: has_related_synonym
annotated target: Umweltmaßnahme @de
created by: https://orcid.org/0000-0002-9620-2832
has db xref: www.awi.de/internas

environment associated with an aquatic invertebrate
type: Class
subclass of: animal-associated environment
subclass of: environment associated with an animal part or small animal
definition: An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system.
has db xref: http://purl.jp/bio/11/meo/MEO_0000871
in subset: envoMeo
in subset: envoOmics

Axiom
annotated source: environment associated with an aquatic invertebrate
annotated property: hasDbXref
annotated target: http://purl.jp/bio/11/meo/MEO_0000871
comment: Not currently live, may need to be switched to alternative PURLs.

acidic soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001429
subclass of: soil
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001429
definition: Soil which has increased levels of molecules or ions capable of donating a hydron (proton or hydrogen ion) to other chemical entities, or, alternatively, capable of forming covalent bonds with other chemicals via the acceptance of an electron pair, resulting in a bulk pH measurement of less than 7.

Axiom
annotated source: acidic soil
annotated property: definition
annotated target: Soil which has increased levels of molecules or ions capable of donating a hydron (proton or hydrogen ion) to other chemical entities, or, alternatively, capable of forming covalent bonds with other chemicals via the acceptance of an electron pair, resulting in a bulk pH measurement of less than 7.
has db xref: https://en.wikipedia.org/wiki/Acid

algal material
type: Class
subclass of: organic material
editor note: This class will be axiomatised with "alga" once an approach to handle this term's ambiguous semantics has been agreed with PCO.
comment: An organic material which is primarily composed of living or dead algae, along with their exudates.

Axiom
annotated source: algal material
annotated property: comment
annotated target: An organic material which is primarily composed of living or dead algae, along with their exudates.
has db xref: https://en.wikipedia.org/wiki/Algae

water surface
type: Class
equivalent class: Class
  intersection of: liquid surface layer
  intersection of: Restriction
    on property: is part of
    some values from: liquid water
subclass of: aquatic layer
subclass of: liquid surface layer
subclass of: Restriction
  on property: is part of
  some values from: liquid water
definition: The surface layer of a volume of water.
has db xref: EcoLexicon:surface_water
has db xref: SWEETRealm:SurfaceWater
has db xref: https://en.wikipedia.org/wiki/Surface_water
has exact synonym: surface of a body of water
has exact synonym: water body surface

sediment surface
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: is part of
    some values from: sediment
subclass of: surface layer
subclass of: Restriction
  on property: is part of
  some values from: sediment
definition: The surface layer of a mass of sediment.
has exact synonym: surface of a sedimentary mass
has exact synonym: surface sediment

terrestrial environmental zone
type: Class
equivalent class: Class
  intersection of: environmental zone
  intersection of: Restriction
    on property: is part of
    some values from: planetary landmass
subclass of: environmental zone
subclass of: astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: terrestrial biome
subclass of: Restriction
  on property: is part of
  some values from: planetary landmass
definition: An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it.

anthropised terrestrial environmental zone
type: Class
equivalent class: Class
  intersection of: terrestrial environmental zone
  intersection of: Restriction
    on property: is part of
    some values from: anthropogenic terrestrial biome
subclass of: terrestrial environmental zone
subclass of: Restriction
  on property: is part of
  some values from: anthropogenic terrestrial biome
definition: A terrestrial zone which is bounded by constructed, manufactured, or other anthropogenic material entities.

lithification
type: Class
equivalent class: Class
  intersection of: material transformation process
  intersection of: Restriction
    on property: has input
    some values from: sediment
  intersection of: Restriction
    on property: results in formation of
    some values from: sedimentary rock
subclass of: material transformation process
subclass of: biological_process
subclass of: Restriction
  on property: has input
  some values from: sediment
subclass of: Restriction
  on property: results in formation of
  some values from: sedimentary rock
definition: A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock.

Axiom
annotated source: lithification
annotated property: definition
annotated target: A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock.
has db xref: https://en.wikipedia.org/wiki/Lithification

grassland ecosystem
type: Class
subclass of: terrestrial ecosystem
definition: An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.
has db xref: EcoLexicon:grassland
has db xref: FTT:259
has db xref: FTT:760
has db xref: FTT:766
has db xref: Geonames:V.GRSLD
has db xref: LTER:232
has db xref: TGN:21604
has db xref: TGN:54052
has exact synonym: GRASSLAND
has exact synonym: grassland
has_related_synonym: Grassland
has_related_synonym: down
has_related_synonym: downland
has_related_synonym: downs
has_related_synonym: glade
has_related_synonym: grazing area
has_related_synonym: herbaceous area

Axiom
annotated source: grassland ecosystem
annotated property: definition
annotated target: An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.
has db xref: https://en.wikipedia.org/wiki/Grassland

Axiom
annotated source: grassland ecosystem
annotated property: hasExactSynonym
annotated target: GRASSLAND
has db xref: USGS:SDTS

Axiom
annotated source: grassland ecosystem
annotated property: hasExactSynonym
annotated target: grassland
has db xref: Geonames:feature

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: Grassland
has db xref: NASA:earthrealm

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: down
has db xref: USGS:SDTS

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: downland
has db xref: USGS:SDTS

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: downs
has db xref: USGS:SDTS

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: glade
has db xref: ADL:FTT

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: glade
has db xref: USGS:SDTS

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: grazing area
has db xref: ADL:FTT

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: grazing area
has db xref: Getty:TGN

Axiom
annotated source: grassland ecosystem
annotated property: has_related_synonym
annotated target: herbaceous area
has db xref: USGS:SDTS

wetland ecosystem
type: Class
subclass of: ecosystem
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: planetary landmass
    intersection of: Restriction
      on property: composed primarily of
      some values from: Class
        intersection of: soil
        intersection of: Restriction
definition: A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
has db xref: EcoLexicon:wetland
has db xref: FTT:1001
has db xref: FTT:1060
has db xref: FTT:1061
has db xref: FTT:1118
has db xref: FTT:1180
has db xref: FTT:1190
has db xref: FTT:1206
has db xref: FTT:1207
has db xref: FTT:1226
has db xref: FTT:184
has db xref: FTT:185
has db xref: FTT:228
has db xref: FTT:281
has db xref: FTT:480
has db xref: FTT:716
has db xref: FTT:883
has db xref: FTT:934
has db xref: FTT:945
has db xref: FTT:983
has db xref: Geonames:H.WTLD
has db xref: LTER:630
has db xref: SPIRE:Bog
has db xref: SWEETRealm:Wetland
has db xref: TGN:21301
has db xref: TGN:21304
has db xref: TGN:21305
has db xref: https://en.wikipedia.org/wiki/Wetland
has exact synonym: WETLAND
has exact synonym: Wetland
has narrow synonym: EstuarineWetland
has narrow synonym: LacustrineWetland
has narrow synonym: MarineWetland
has narrow synonym: PalustrineWetland
has narrow synonym: RiparianWetland
has narrow synonym: TerrestialWetland
has narrow synonym: back marsh
has narrow synonym: backswamp
has narrow synonym: backwater
has narrow synonym: barrier flat
has narrow synonym: blanket bog
has narrow synonym: bog
has narrow synonym: cienaga
has narrow synonym: dismal
has narrow synonym: everglade
has narrow synonym: floating marsh
has narrow synonym: forested wetland
has narrow synonym: marsh
has narrow synonym: mire
has narrow synonym: mud flat
has narrow synonym: peat cutting area
has narrow synonym: peatland
has narrow synonym: quagmire
has narrow synonym: quaking bog
has narrow synonym: riparian area
has narrow synonym: slash
has narrow synonym: slough
has narrow synonym: slue
has narrow synonym: swamp forest
has narrow synonym: tulelands
has_related_synonym: moor
has_related_synonym: morass
has_related_synonym: muskeg

Axiom
annotated source: wetland ecosystem
annotated property: definition
annotated target: A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
has db xref: https://en.wikipedia.org/wiki/Wetland

Axiom
annotated source: wetland ecosystem
annotated property: hasExactSynonym
annotated target: WETLAND
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasExactSynonym
annotated target: Wetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: EstuarineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: LacustrineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: MarineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: PalustrineWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: RiparianWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: TerrestialWetland
has db xref: NASA:earthrealm

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: back marsh
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: backswamp
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: backwater
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: barrier flat
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: blanket bog
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: bog
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: bog
has db xref: Getty:TGN

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: cienaga
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: dismal
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: everglade
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: floating marsh
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: forested wetland
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: marsh
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: mire
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: mire
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: mud flat
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: peat cutting area
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: peatland
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: quagmire
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: quagmire
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: quaking bog
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: riparian area
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slash
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slough
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slough
has db xref: Getty:TGN

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slough
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: slue
has db xref: ADL:FTT

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: swamp forest
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: hasNarrowSynonym
annotated target: tulelands
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: has_related_synonym
annotated target: moor
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: has_related_synonym
annotated target: morass
has db xref: USGS:SDTS

Axiom
annotated source: wetland ecosystem
annotated property: has_related_synonym
annotated target: muskeg
has db xref: USGS:SDTS

defence against flooding
type: Class
equivalent class: Class
  intersection of: anthropogenic modulatory intervention process
  intersection of: Restriction
    on property: negatively regulates
    some values from: flooding
subclass of: anthropogenic modulatory intervention process
subclass of: Restriction
  on property: negatively regulates
  some values from: flooding
definition: A planned process during which an environmental system is modified to mitigate or nullify the impacts of flooding.
has exact synonym: defense against flooding
has_related_synonym: defence against floods
has_related_synonym: defense against floods
has_related_synonym: flood defence
has_related_synonym: flood defence intervention
has_related_synonym: flood defense
has_related_synonym: flood defense intervention

stellar radiation
type: Class
equivalent class: Class
  intersection of: electromagnetic radiation
  intersection of: Restriction
    on property: process has causal agent
    some values from: star
subclass of: electromagnetic radiation
subclass of: Restriction
  on property: process has causal agent
  some values from: star
definition: An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
has db xref: NCIT:C44445
has narrow synonym: solar radiation
in subset: environmental_hazards
in subset: envoAstro

Axiom
annotated source: stellar radiation
annotated property: definition
annotated target: An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
has db xref: https://en.wikipedia.org/wiki/Electromagnetic_radiation
has db xref: https://en.wikipedia.org/wiki/Solar_irradiance

Axiom
annotated source: stellar radiation
annotated property: hasNarrowSynonym
annotated target: solar radiation
has db xref: NCIT:C44445

water accumulation process
type: Class
subclass of: liquid accumulation process
subclass of: hydrological process
subclass of: Restriction
  on property: has participant
  some values from: liquid water
subclass of: Restriction
  on property: has output
  some values from: water body
definition: A process during which liquid water accumulates in a site, most often in some form of container.

office building
type: Class
subclass of: commercial building
subclass of: Restriction
  on property: has part
  some values from: toilet fixture
subclass of: Restriction
  on property: has part
  some values from: office
definition: A commercial building which contains parts used as workplaces primarily for administrative and managerial workers.
comment: "An office building will be divided into sections for different companies or may be dedicated to one company. In either case, each company will typically have a reception area, one or several meeting rooms, singular or open-plan offices, as well as toilets."

Axiom
annotated source: office building
annotated property: definition
annotated target: A commercial building which contains parts used as workplaces primarily for administrative and managerial workers.
has db xref: https://en.wikipedia.org/wiki/Office#Office_buildings

Axiom
annotated source: office building
annotated property: comment
annotated target: "An office building will be divided into sections for different companies or may be dedicated to one company. In either case, each company will typically have a reception area, one or several meeting rooms, singular or open-plan offices, as well as toilets."
has db xref: https://en.wikipedia.org/wiki/Office#Office_buildings

commercial building
type: Class
equivalent class: Class
  intersection of: building
  intersection of: Restriction
    on property: participates in
    some values from: usage of an environment for business
subclass of: building
subclass of: Restriction
  on property: participates in
  some values from: usage of an environment for business
definition: A building which is primarily used to facilitate the buying or selling of goods or services.
comment: "Commerce includes legal, economic, political, social, cultural and technological systems that are in operation in any country or internationally."

Axiom
annotated source: commercial building
annotated property: definition
annotated target: A building which is primarily used to facilitate the buying or selling of goods or services.
has db xref: https://en.wikipedia.org/wiki/Commercial_building

Axiom
annotated source: commercial building
annotated property: comment
annotated target: "Commerce includes legal, economic, political, social, cultural and technological systems that are in operation in any country or internationally."
has db xref: https://en.wikipedia.org/wiki/Commerce

office
type: Class
subclass of: building part
definition: A building part within which administrative work is done by an organisations users in order to support and realise the objectives of that organization.

Axiom
annotated source: office
annotated property: definition
annotated target: A building part within which administrative work is done by an organisations users in order to support and realise the objectives of that organization.
has db xref: https://en.wikipedia.org/wiki/Office#Office_buildings

terrestrial natural environment
type: Class
equivalent class: Class
  intersection of: natural environment
  intersection of: Restriction
    on property: is part of
    some values from: planetary landmass
subclass of: astronomical body part
subclass of: natural environment
subclass of: Restriction
  on property: is part of
  some values from: planetary landmass
definition: A natural environment which is located on a land mass.

aquatic natural environment
type: Class
equivalent class: Class
  intersection of: natural environment
  intersection of: Restriction
    on property: is part of
    some values from: water body
subclass of: astronomical body part
subclass of: natural environment
subclass of: Restriction
  on property: is part of
  some values from: water body
definition: A natural environment which is within a water body.

forest canopy
type: Class
subclass of: astronomical body part
subclass of: canopy
subclass of: Restriction
  on property: is part of
  some values from: forest ecosystem
has db xref: EcoLexicon:canopy
has db xref: LTER:82
has db xref: SWEETRealm:Canopy
has db xref: https://en.wikipedia.org/wiki/Canopy

woodland canopy
type: Class
subclass of: astronomical body part
subclass of: canopy
subclass of: Restriction
  on property: is part of
  some values from: woodland ecosystem
definition: A canopy which is part of a woodland ecosystem.
has db xref: EcoLexicon:canopy
has db xref: LTER:82
has db xref: SWEETRealm:Canopy
has db xref: https://en.wikipedia.org/wiki/Canopy

crop canopy
type: Class
subclass of: astronomical body part
subclass of: canopy
subclass of: Restriction
  on property: is part of
  some values from: cropland ecosystem
definition: A canopy which is composed of the aboveground portion, or crowns, of a community of crop plants.
has db xref: EcoLexicon:canopy
has db xref: LTER:82
has db xref: SWEETRealm:Canopy
has db xref: https://en.wikipedia.org/wiki/Canopy

canopy
type: Class
subclass of: vegetation layer
definition: A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community.
has db xref: EcoLexicon:canopy
has db xref: LTER:82
has db xref: SWEETRealm:Canopy
comment: false

Axiom
annotated source: canopy
annotated property: definition
annotated target: A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community.
has db xref: https://en.wikipedia.org/wiki/Canopy_%28biology%29

forest ecosystem
type: Class
subclass of: terrestrial ecosystem
subclass of: Restriction
  on property: has part
  some values from: forest canopy
definition: An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.
editor note: The correct usage of FLOPO terms in the axiomatisation needs to be confirmed.
comment: The definitions of forest can vary greatly, and different classes will be needed to support the major categories. Tree cover alone is not enough to distinguish between forests and plantations. The international definition proposed by the 2010 FAO Forestry Resource Assessment: "land spanning more than 0.5 ha with trees higher than 5 metres and canopy cover of more than 10 percent, or trees able to reach these thresholds in situ . It does not include land that is predominantly under agricultural or urban land use." - FAO. 2010. Global forest resources assessment 2010, Main report, FAO Forestry Paper 163. Rome.

Axiom
annotated source: forest ecosystem
annotated property: definition
annotated target: An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.
has db xref: http://www.fao.org/docrep/017/ap862e/ap862e00.pdf
comment: https://www1.usgs.gov/csas/nvcs/nvcsGetUnitDetails

cropland ecosystem
type: Class
subclass of: terrestrial ecosystem
subclass of: anthropised ecosystem
definition: An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.

Axiom
annotated source: cropland ecosystem
annotated property: definition
annotated target: An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.
has db xref: http://dx.doi.org/10.1890/070062

woodland ecosystem
type: Class
subclass of: terrestrial ecosystem
subclass of: Restriction
  on property: has part
  some values from: woodland canopy
definition: An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities are spaced sufficiently far apart to allow sunlight to illuminate the understory.
editor note: The correct usage of FLOPO terms in the axiomatisation needs to be confirmed.
comment: Woodland understories are often populated with communities of shrubs and herbaceous plants including grasses. There are varying distinctions between woodland and forest, with a large degree of ambiguity.

Axiom
annotated source: woodland ecosystem
annotated property: definition
annotated target: An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities are spaced sufficiently far apart to allow sunlight to illuminate the understory.
has db xref: https://en.wikipedia.org/wiki/Woodland

agricultural process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: occurs in
    some values from: Class
      union of: cropland biome
      union of: village biome
      union of: rangeland biome
subclass of: anthropogenic environmental process
subclass of: Restriction
  on property: occurs in
  some values from: planetary landmass
subclass of: Restriction
  on property: occurs in
  some values from: Class
    union of: cropland biome
    union of: village biome
    union of: rangeland biome
definition: A process during which humans rear animals or plants on land for harvest and consumption.
editor note: Expand the sites of occurrence listed as axioms as new terms emerge.
has_related_synonym: agriculture

Axiom
annotated source: agricultural process
annotated property: definition
annotated target: A process during which humans rear animals or plants on land for harvest and consumption.
comment: http://www.fao.org/docrep/003/x6941e/x6941e04.htm#bm04

liquid layer
type: Class
equivalent class: Class
  intersection of: fluid layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid environmental material
subclass of: fluid layer
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid environmental material
definition: A layer which is primarily composed of some liquid material.

solid layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: solid environmental material
subclass of: layer
subclass of: Restriction
  on property: composed primarily of
  some values from: solid environmental material
definition: A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.

water ice layer
type: Class
equivalent class: Class
  intersection of: solid layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: water ice
subclass of: solid layer
subclass of: cryospheric layer
subclass of: cryoform
subclass of: Restriction
  on property: composed primarily of
  some values from: water ice
definition: A solid layer which is primarily composed of some water-based ice.

bush area
type: Class
equivalent class: Class
  intersection of: vegetated area
  intersection of: Restriction
    on property: overlaps
    some values from: Class
      union of: forested area
      union of: scrubland area
      union of: area of scrub
      union of: area of developed open space
      union of: area of sedge- and forb-dominated herbaceous vegetation
      union of: area of gramanoid or herbaceous vegetation
subclass of: vegetated area
subclass of: Restriction
  on property: overlaps
  some values from: Class
    union of: forested area
    union of: scrubland area
    union of: area of scrub
    union of: area of developed open space
    union of: area of sedge- and forb-dominated herbaceous vegetation
    union of: area of gramanoid or herbaceous vegetation
definition: A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested
has_related_synonym: the bush
comment: "Bush" is a rather loosely defined regional term, primarily used in Australia.

Axiom
annotated source: bush area
annotated property: definition
annotated target: A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested
has db xref: https://www.merriam-webster.com/dictionary/bush#h1

atmospheric zone
type: Class
equivalent class: Class
  intersection of: environmental zone
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
subclass of: environmental zone
subclass of: Restriction
  on property: is part of
  some values from: atmosphere
definition: An environmental zone which is part of an atmosphere.
has exact synonym: atmospheric area

vegetated area
type: Class
subclass of: terrestrial environmental zone
definition: A vegetated area is a geographic feature which has ground cover dominated by plant communities.
created by: ORCID:0000-0002-4366-3088
in subset: envoPolar

hydroform
type: Class
equivalent class: Class
  intersection of: liquid astronomical body part
  intersection of: Restriction
    on property: is part of
    some values from: water body
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid water
subclass of: liquid astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: water body
subclass of: Restriction
  on property: contains process
  some values from: water flow process
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid water
definition: A liquid astronomical body part which is primarily composed of a continuous volume of liquid water and is held in shape or sustained by an environmental process.
editor note: Should create links to envrionmental process with new relation like "sustained_by"
comment: Similar, in spirit, to landform.

Axiom
annotated source: hydroform
annotated property: editor note
annotated target: Should create links to envrionmental process with new relation like "sustained_by"
created by: ORCID:0000-0002-4366-3088

liquid air-water interface layer
type: Class
equivalent class: Class
  intersection of: liquid surface layer
  intersection of: Restriction
    on property: adjacent to
    some values from: air
subclass of: liquid surface layer
subclass of: Restriction
  on property: adjacent to
  some values from: air
definition: A liquid surface layer which is in contact with air.

liquid surface layer
type: Class
equivalent class: Class
  intersection of: fluid surface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid environmental material
subclass of: liquid layer
subclass of: fluid surface layer
subclass of: fluid interface layer
definition: A surface layer which is composed primarily of some liquid.

solid surface layer
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: solid environmental material
subclass of: surface layer
subclass of: solid layer
definition: A surface layer which is composed primarily of solid environmental material.

saline water body
type: Class
equivalent class: Class
  intersection of: water body
  intersection of: Restriction
    on property: composed primarily of
    some values from: saline water
subclass of: water body
subclass of: Restriction
  on property: composed primarily of
  some values from: saline water
definition: A body of water which is primarily composed of saline water.
has exact synonym: saline body of water
comment: This class has its subclasses populated by inference.

advective transport process
type: Class
equivalent class: Class
  intersection of: material transport process
  intersection of: Restriction
    on property: bearer of
    some values from: advective
subclass of: material transport process
subclass of: Restriction
  on property: has part
  some values from: convective transport process
subclass of: Restriction
  on property: has part
  some values from: material diffusion process
subclass of: Restriction
  on property: bearer of
  some values from: advective
definition: A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
has exact synonym: advective transport
comment: Advective processes are disjoint from diffusive processes. Typically, fluids are advected.

Axiom
annotated source: advective transport process
annotated property: definition
annotated target: A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
has db xref: https://en.wikipedia.org/wiki/Advection
has db xref: https://en.wikipedia.org/wiki/Intensive_and_extensive_properties

tidal flow process
type: Class
subclass of: mass liquid flow
subclass of: water flow process
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: advective transport process
    intersection of: Restriction
      on property: has participant
      some values from: liquid water
definition: A water flow process during which movements of water masses caused by varying gravitational and rotational forces from astronomical bodies, combined with the rotation of the astronomical body containing the water mass, cause waters to undergo periodic depth oscillations (tides).
alternative term: tidal flow
in subset: envoCmecs
in subset: envoMarine

erosion
type: Class
subclass of: material transport process
subclass of: Restriction
  on property: has participant
  some values from: environmental material
subclass of: Restriction
  on property: has participant
  some values from: planetary crust
definition: An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.

Axiom
annotated source: erosion
annotated property: definition
annotated target: An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
has db xref: https://en.wikipedia.org/wiki/Erosion

desert
type: Class
subclass of: surface landform
subclass of: Restriction
  on property: overlaps
  some values from: desert area
definition: A landform which has been rendered barren or partially barren by environmental extremes, especially by low rainfall, and which loses more liquid water by evapotranspiration than is supplied by precipitation.

aerosolised particle formation process
type: Class
subclass of: particulate matter formation process
subclass of: Class
  intersection of: Class
    union of: Restriction
      on property: has quality
      some values from: PATO_0001546
    union of: Restriction
      on property: has quality
      some values from: PATO_0001548
  intersection of: Restriction
    on property: has output
    some values from: particulate environmental material
subclass of: Restriction
  on property: is part of
  some values from: aerosol formation process
subclass of: Restriction
  on property: has input
  some values from: gaseous environmental material
definition: A process during which particles suspended in a gaseous medium are formed.
has exact synonym: new particle formation process
in subset: envoAtmo

Axiom
annotated source: aerosolised particle formation process
annotated property: definition
annotated target: A process during which particles suspended in a gaseous medium are formed.
has db xref: https://en.wikipedia.org/wiki/Aerosol
has db xref: https://en.wikipedia.org/wiki/Particulates

primary aerosol formation process
type: Class
equivalent class: Class
  intersection of: material transport process
  intersection of: Restriction
    on property: has input
    some values from: Class
      intersection of: gaseous environmental material
      intersection of: Class
        union of: particulate environmental material
        union of: solid environmental material
        union of: liquid environmental material
  intersection of: Restriction
    on property: has output
    some values from: aerosol
subclass of: material transport process
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: gaseous environmental material
    intersection of: Class
      union of: particulate environmental material
      union of: solid environmental material
      union of: liquid environmental material
subclass of: Restriction
  on property: has output
  some values from: aerosol
definition: A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
has_related_synonym: primary aerosol formation

Axiom
annotated source: primary aerosol formation process
annotated property: definition
annotated target: A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
has db xref: https://en.wikipedia.org/wiki/Aerosol
has db xref: https://en.wikipedia.org/wiki/Particulates

gill tissue material
type: Class
subclass of: organic material
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: UBERON_0000479
    intersection of: Restriction
      on property: is part of
      some values from: UBERON_0002535
created by: https://orcid.org/0000-0002-4366-3088
comment: An organic environmental material which is primarily composed of gill tissue.

laboratory environment
type: Class
subclass of: anthropogenic environment
definition: An anthropogenic environment which is bounded by the building envelope of a laboratory and in which a system of manufactured products exert control on one or more of its environmental conditions.
created by: https://orcid.org/0000-0002-4366-3088

laboratory facility
type: Class
subclass of: research facility
subclass of: Restriction
  on property: has part
  some values from: laboratory environment
definition: A research facility in which systems of manufactured products control internal conditions and in which scientific or technological research, experiments, and measurement may be performed.
created by: https://orcid.org/0000-0002-4366-3088
created by: https://orcid.org/0000-0002-9578-0788
has exact synonym: research laboratory

Axiom
annotated source: laboratory facility
annotated property: definition
annotated target: A research facility in which systems of manufactured products control internal conditions and in which scientific or technological research, experiments, and measurement may be performed.
has db xref: https://en.wikipedia.org/wiki/Laboratory

land conversion process
type: Class
subclass of: land consumption process
subclass of: Restriction
  on property: has participant
  some values from: terrestrial biome
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: anthropogenic environment
    union of: natural environment
definition: An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce.
created by: https://orcid.org/0000-0002-4366-3088
has exact synonym: land conversion
has exact synonym: land development
comment: Further examples include subdividing real estate into lots, typically for the purpose of building homes and converting unused factories into condominia.

Axiom
annotated source: land conversion process
annotated property: definition
annotated target: An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce.
has db xref: https://en.wikipedia.org/wiki/Land_development

Axiom
annotated source: land conversion process
annotated property: comment
annotated target: Further examples include subdividing real estate into lots, typically for the purpose of building homes and converting unused factories into condominia.
has db xref: https://en.wikipedia.org/wiki/Land_development

agricultural land conversion process
type: Class
subclass of: land conversion process
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: anthropogenic environment
    union of: natural environment
subclass of: Restriction
  on property: has output
  some values from: Class
    union of: agricultural field
    union of: cropland biome
    union of: village biome
    union of: rangeland biome
definition: A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock.
created by: https://orcid.org/0000-0002-4366-3088
has exact synonym: agricultural land conversion
comment: This process typically relies on the conversion and development of forests, savannas or grassland. Creation of farmland from wasteland, deserts or previous impervious surfaces is considerably less frequent because of the presence of degraded soil or the lack of fertile soil.

Axiom
annotated source: agricultural land conversion process
annotated property: definition
annotated target: A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock.
has db xref: https://en.wikipedia.org/wiki/Land_development

Axiom
annotated source: agricultural land conversion process
annotated property: comment
annotated target: This process typically relies on the conversion and development of forests, savannas or grassland. Creation of farmland from wasteland, deserts or previous impervious surfaces is considerably less frequent because of the presence of degraded soil or the lack of fertile soil.
has db xref: https://en.wikipedia.org/wiki/Land_development

land use process
type: Class
equivalent class: Class
  intersection of: planned environmental usage process
  intersection of: Restriction
    on property: has participant
    some values from: Class
      union of: terrestrial biome
      union of: planetary landmass
      union of: terrestrial natural environment
subclass of: planned environmental usage process
subclass of: Restriction
  on property: has part
  some values from: Class
    union of: land consumption process
    union of: land conversion process
    union of: land degradation
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: terrestrial biome
    union of: planetary landmass
    union of: terrestrial natural environment
definition: An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment.
created by: https://orcid.org/0000-0002-4366-3088
comment: There are multiple systems of land use classification. This hierarchy aims to be generally applicable, but national systems can be added on request.

Axiom
annotated source: land use process
annotated property: definition
annotated target: An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use

terrestrial mining
type: Class
equivalent class: Class
  intersection of: mining
  intersection of: Restriction
    on property: has participant
    some values from: Class
      union of: terrestrial biome
      union of: planetary landmass
      union of: terrestrial natural environment
subclass of: mining
subclass of: Restriction
  on property: has part
  some values from: Class
    union of: land consumption process
    union of: land conversion process
    union of: land degradation
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: terrestrial biome
    union of: planetary landmass
    union of: terrestrial natural environment
definition: A land use process during which materials of economic value are extracted from a planet, usually from an orebody, lode, vein, seam, reef or placer deposit.
created by: https://orcid.org/0000-0002-4366-3088
has broad synonym: mining

Axiom
annotated source: terrestrial mining
annotated property: definition
annotated target: A land use process during which materials of economic value are extracted from a planet, usually from an orebody, lode, vein, seam, reef or placer deposit.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use
has db xref: https://en.wikipedia.org/wiki/Mining
has db xref: https://www.eionet.europa.eu/gemet/en/concept/14837

anthropogenic ecosystem conversion process
type: Class
subclass of: anthropogenic environmental process
definition: A process during which an ecosystem - natural or anthropised - is changed by the actions of humans.
created by: https://orcid.org/0000-0002-4366-3088

planned environmental usage process
type: Class
subclass of: anthropogenic environmental process
subclass of: OBI_0000011
subclass of: Restriction
  on property: has part
  some values from: anthropisation
subclass of: Restriction
  on property: has part
  some values from: active ecosystem management process
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: anthropogenic environment
    union of: natural environment
definition: A planned process during which humans access and obtain resources, benefits, or services from a natural or anthropised ecosystem.
created by: https://orcid.org/0000-0002-4366-3088

mining
type: Class
subclass of: planned environmental usage process
subclass of: Restriction
  on property: has part
  some values from: material extraction process
subclass of: Restriction
  on property: has part
  some values from: ecosystem fragmentation process
definition: A planned environmental usage process during which a non-renewable resource such as petroleum, natural gas, or water is extracted from an ecosystem.
created by: https://orcid.org/0000-0002-4366-3088

Axiom
annotated source: mining
annotated property: definition
annotated target: A planned environmental usage process during which a non-renewable resource such as petroleum, natural gas, or water is extracted from an ecosystem.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use
has db xref: https://en.wikipedia.org/wiki/Mining
has db xref: https://www.eionet.europa.eu/gemet/en/concept/14837

marine mining
type: Class
equivalent class: Class
  intersection of: mining
  intersection of: Restriction
    on property: has participant
    some values from: Class
      union of: marine biome
      union of: marine environment
subclass of: mining
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: marine biome
    union of: marine environment
definition: A mining process which occurs in a marine ecosystem.
created by: https://orcid.org/0000-0002-4366-3088

coal mining
type: Class
subclass of: mining
subclass of: Restriction
  on property: has participant
  some values from: coal mine
subclass of: Restriction
  on property: has participant
  some values from: coal
subclass of: Restriction
  on property: has output
  some values from: coal mine waste material
definition: A mining process during which coal is extracted from the rocky portion of an astronomical body.
created by: https://orcid.org/0000-0002-4366-3088
comment: This may be either terrestrial or marine.

Axiom
annotated source: coal mining
annotated property: definition
annotated target: A mining process during which coal is extracted from the rocky portion of an astronomical body.
has db xref: https://en.wikipedia.org/wiki/Mining
has db xref: https://www.eionet.europa.eu/gemet/en/concept/1507

usage of an environment for transportation
type: Class
subclass of: planned environmental usage process
subclass of: Restriction
  on property: has part
  some values from: material transport process
subclass of: Restriction
  on property: has participant
  some values from: transport feature
definition: A planned environmental usage process during which an environment facilitates the movement of materials and material objects (persons or goods) from place to place, typically with the assistance of a vehicle.
created by: https://orcid.org/0000-0002-4366-3088
has broad synonym: transportation

Axiom
annotated source: usage of an environment for transportation
annotated property: definition
annotated target: A planned environmental usage process during which an environment facilitates the movement of materials and material objects (persons or goods) from place to place, typically with the assistance of a vehicle.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use
has db xref: https://www.eionet.europa.eu/gemet/en/concept/8641

usage of an environment for infrastructure and utilities
type: Class
subclass of: planned environmental usage process
subclass of: Restriction
  on property: has part
  some values from: material transport process
subclass of: Restriction
  on property: has participant
  some values from: transport feature
definition: A planned environmental usage process during which an environment supports 1) enterprises concerned with the provision to the public of essentials, such as electricity or water or 2) the basic network or foundation of capital facilities or community investments which are necessary to support economic and community activities.
created by: https://orcid.org/0000-0002-4366-3088
has broad synonym: transportation

Axiom
annotated source: usage of an environment for infrastructure and utilities
annotated property: definition
annotated target: A planned environmental usage process during which an environment supports 1) enterprises concerned with the provision to the public of essentials, such as electricity or water or 2) the basic network or foundation of capital facilities or community investments which are necessary to support economic and community activities.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use
has db xref: https://www.eionet.europa.eu/gemet/en/concept/4321
has db xref: https://www.eionet.europa.eu/gemet/en/concept/6822

usage of an environment for residential activity
type: Class
subclass of: planned environmental usage process
subclass of: Restriction
  on property: has participant
  some values from: human dwelling
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: PCO_0000002
    intersection of: Restriction
      on property: composed primarily of
      some values from: NCBITaxon 9606
definition: A planned environmental usage process during which an environment supports the settlement and dwelling of a community of humans.
created by: https://orcid.org/0000-0002-4366-3088
has broad synonym: residential
comment: This class does not include environments which are primarily used for commerce or industry.

Axiom
annotated source: usage of an environment for residential activity
annotated property: definition
annotated target: A planned environmental usage process during which an environment supports the settlement and dwelling of a community of humans.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use
has db xref: https://www.eionet.europa.eu/gemet/en/concept/7143

usage of an environment for industry
type: Class
subclass of: planned environmental usage process
subclass of: Restriction
  on property: has participant
  some values from: industrial building
subclass of: Restriction
  on property: has output
  some values from: industrial waste material
definition: A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production.
created by: https://orcid.org/0000-0002-4366-3088
comment: This class includes environments used to support the facilities engaged with a broad variety of manufacturing activities from food and tobacco, to textiles, metals, vehicles, and chemicals.

Axiom
annotated source: usage of an environment for industry
annotated property: definition
annotated target: A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use
has db xref: https://www.eionet.europa.eu/gemet/en/concept/4279

usage of an environment for business
type: Class
subclass of: planned environmental usage process
definition: A planned environmental usage process during which an environment supports facilities associated with commerce or the earning of a livelihood through means other than manufacturing or the provision of a public service.
created by: https://orcid.org/0000-0002-4366-3088
comment: This class includes activities carried out in commercial offices, meeting centres, art studios, recording studios, film sets, warehouses, and distribution centres.

Axiom
annotated source: usage of an environment for business
annotated property: definition
annotated target: A planned environmental usage process during which an environment supports facilities associated with commerce or the earning of a livelihood through means other than manufacturing or the provision of a public service.
has db xref: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
has db xref: https://en.wikipedia.org/wiki/Land_use
has db xref: https://www.eionet.europa.eu/gemet/en/concept/1084

body of liquid
type: Class
subclass of: liquid astronomical body part
definition: A liquid astronomical body part which is continuous and is delimited by physical discontinuities or non-liquid boundaries.
created by: https://orcid.org/0000-0002-4366-3088

liquid astronomical body part
type: Class
equivalent class: Class
  intersection of: fluid astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid environmental material
subclass of: fluid astronomical body part
subclass of: compound astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid environmental material
definition: A part of an astronomical body which is primarily composed of liquid material.
created by: https://orcid.org/0000-0002-4366-3088

gaseous astronomical body part
type: Class
equivalent class: Class
  intersection of: fluid astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: gaseous environmental material
subclass of: fluid astronomical body part
subclass of: compound astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: gaseous environmental material
definition: A part of an astronomical body which is primarily composed of gaseous material.
created by: https://orcid.org/0000-0002-4366-3088

fluid astronomical body part
type: Class
equivalent class: Class
  intersection of: astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: fluid environmental material
subclass of: astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: fluid environmental material
definition: A part of an astronomical body which is primarily composed of fluid.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2018-10-04T13:59:22Z

Axiom
annotated source: fluid astronomical body part
annotated property: definition
annotated target: A part of an astronomical body which is primarily composed of fluid.
has db xref: Fluid

domestic building
type: Class
equivalent class: Class
  intersection of: building
  intersection of: Restriction
    on property: participates in
    some values from: usage of an environment for residential activity
subclass of: building
subclass of: Restriction
  on property: participates in
  some values from: usage of an environment for residential activity
definition: A building which is primarily used for the long-term habitation of humans.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2018-10-04T14:04:49Z

Axiom
annotated source: domestic building
annotated property: definition
annotated target: A building which is primarily used for the long-term habitation of humans.
has db xref: https://en.wikipedia.org/wiki/Commercial_building

surface of an astronomical body
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: is part of
    some values from: astronomical body
subclass of: surface layer
subclass of: astronomical body part
subclass of: Class
  union of: Restriction
    on property: adjacent to
    some values from: atmosphere
  union of: Restriction
    on property: adjacent to
    some values from: outer space
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: solid environmental material
    union of: liquid environmental material
definition: A surface layer where the solid or liquid material of an astronomical body comes into contact with an atmosphere or outer space.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2018-10-04T16:55:57Z
has_related_synonym: land surface
comment: a useful class: this can be used to define sub-terrestrial and sub-marine entities

aircraft
type: Class
subclass of: vehicle
definition: A vehicle which is able to travel through air in an atmosphere.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2018-10-04T19:28:01Z

Axiom
annotated source: aircraft
annotated property: definition
annotated target: A vehicle which is able to travel through air in an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Aircraft

flattened elevation
type: Class
equivalent class: Class
  intersection of: elevated landform
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0002254
subclass of: elevated landform
subclass of: Restriction
  on property: has quality
  some values from: PATO_0002254
definition: An elevation which is flattened across its highest surface.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2018-10-05T21:12:47Z

anthropogenic light pollution
type: Class
subclass of: anthropogenic environmental process
subclass of: environmental pollution
subclass of: Restriction
  on property: has part
  some values from: visible spectrum radiation from a manufactured product
definition: A pollution process during which artificial light with wavelengths in the visible spectrum is released into the environment.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-09T09:05:35Z
has exact synonym: Lichtverschmutzung @de
comment: This form of pollution is typically the result of urbanisation or similar land use change.

Axiom
annotated source: anthropogenic light pollution
annotated property: hasExactSynonym
annotated target: Lichtverschmutzung @de
has db xref: INTERNAS:WS2
has db xref: http://www.awi.de/internas

radiation from a manufactured product
type: Class
equivalent class: Class
  intersection of: electromagnetic radiation
  intersection of: Restriction
    on property: process has causal agent
    some values from: manufactured product
subclass of: electromagnetic radiation
subclass of: Restriction
  on property: process has causal agent
  some values from: manufactured product
definition: An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-09T09:07:24Z
has broad synonym: anthropogenic radiation
has exact synonym: artificial radiation
in subset: environmental_hazards
in subset: envoAstro

Axiom
annotated source: radiation from a manufactured product
annotated property: definition
annotated target: An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
has db xref: https://en.wikipedia.org/wiki/Electromagnetic_radiation
has db xref: https://en.wikipedia.org/wiki/Solar_irradiance

visible spectrum radiation from a manufactured product
type: Class
subclass of: radiation from a manufactured product
definition: Radiation from a manufactured product during which light between the wavelenghts of 380 nm and 760 nm is emitted.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-09T09:21:10Z
has exact synonym: optical radiation from a manufactured product

Axiom
annotated source: visible spectrum radiation from a manufactured product
annotated property: definition
annotated target: Radiation from a manufactured product during which light between the wavelenghts of 380 nm and 760 nm is emitted.
has db xref: iso:std:iso:21348

material congelation process
type: Class
subclass of: material transformation process
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001693
definition: A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-14T18:47:32Z
has exact synonym: congelation
has exact synonym: congelation process
comment: Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question.

Axiom
annotated source: material congelation process
annotated property: definition
annotated target: A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects.
has db xref: https://en.wikipedia.org/wiki/Congelation

Axiom
annotated source: material congelation process
annotated property: comment
annotated target: Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question.
has db xref: https://en.wikipedia.org/wiki/Congelation

frozen land
type: Class
equivalent class: Class
  intersection of: land
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001985
subclass of: land
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001985
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: rock
    union of: soil
definition: Land which is below the freezing point of water.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-14T21:18:19Z
has db xref: http://sweetontology.net/realmCryo/FrozenGround
has exact synonym: frozen ground
comment: Perennially and seasonally frozen ground can vary from being partially to extensively frozen depending on the extent of the phase change. It may be described as hard frozen ground, plastic frozen ground, or dry frozen ground, depending on the pore ice and unfrozen water contents and its compressibility under load.

Axiom
annotated source: frozen land
annotated property: definition
annotated target: Land which is below the freezing point of water.
has db xref: https://orcid.org/0000-0003-4808-4736

Axiom
annotated source: frozen land
annotated property: comment
annotated target: Perennially and seasonally frozen ground can vary from being partially to extensively frozen depending on the extent of the phase change. It may be described as hard frozen ground, plastic frozen ground, or dry frozen ground, depending on the pore ice and unfrozen water contents and its compressibility under load.
has db xref: https://orcid.org/0000-0003-4808-4736

frozen soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001985
subclass of: soil
subclass of: Restriction
  on property: is part of
  some values from: frozen land
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001985
definition: Soil which is below the freezing point of water.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-14T21:26:59Z

freezing
type: Class
subclass of: material congelation process
definition: A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-31T21:13:16Z
has db xref: Freezing
in subset: envoCryo
in subset: envoPolar

Axiom
annotated source: freezing
annotated property: definition
annotated target: A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point.
has db xref: https://en.wikipedia.org/wiki/Freezing

freezing of water into water ice
type: Class
equivalent class: Class
  intersection of: freezing
  intersection of: Restriction
    on property: has input
    some values from: liquid water
  intersection of: Restriction
    on property: has output
    some values from: water ice
subclass of: freezing
subclass of: hydrological process
subclass of: Restriction
  on property: has input
  some values from: liquid water
subclass of: Restriction
  on property: has output
  some values from: water ice
definition: A freezing process during which liquid water is transformed into water ice.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-01-31T21:16:46Z

surface layer of a water body
type: Class
equivalent class: Class
  intersection of: water surface
  intersection of: Restriction
    on property: is part of
    some values from: water body
subclass of: water surface
subclass of: hydroform
subclass of: surface of an astronomical body
definition: A water surface that is part of a water body.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-02-27T21:22:13Z

rain
type: Class
subclass of: object aggregate
subclass of: Restriction
  on property: participates in
  some values from: precipitation process
subclass of: Restriction
  on property: has member
  some values from: raindrop
definition: An aggregate of raindrops falling to a planetary surface during a precipitation process.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-03-02T13:50:58Z

water-based rain
type: Class
subclass of: rain
subclass of: Restriction
  on property: participates in
  some values from: water-based rainfall
subclass of: Restriction
  on property: has member
  some values from: water raindrop
definition: Rain which is composed of water droplets falling to a planetary surface during a rainfall process.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-03-02T13:52:48Z

terrestrial ecoregion
type: Class
subclass of: ecoregion
subclass of: Restriction
  on property: adjacent to
  some values from: planetary landmass
definition: An ecoregion which is located on a landmass.
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-03-05T17:40:44Z
has db xref: https://www.worldwildlife.org/biome-categories/terrestrial-ecoregions

sea surface layer
type: Class
equivalent class: Class
  intersection of: surface layer of a water body
  intersection of: Restriction
    on property: is part of
    some values from: Class
      union of: ocean
      union of: sea
subclass of: surface layer of a water body
subclass of: Restriction
  on property: is part of
  some values from: Class
    union of: ocean
    union of: sea
definition: A surface layer which is part of an ocean or sea.
Contributor: 0000-0002-2996-719X
Contributor: https://orcid.org/0000-0002-8166-0486
Contributor: https://orcid.org/0000-0003-1072-8081
created by: https://orcid.org/0000-0002-4366-3088
creation date: 2019-03-06T01:22:01Z
in subset: envoMarine
in subset: envoPlastics
comment: At this level, the depth of this layer is ambiguous. Some methods (telemetry) measure only the first few centimeters of the sea or ocean surface. In situ methods often sample the first few meters. Subclasses can be created for such cases. Sea surface layer is also used to refer to the surfaces of oceans.

water current
type: Class
subclass of: hydroform
definition: A hydroform which is maintained by a continuous, directed movement of water, generated by disequilibria in a water mass.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-03-19T16:31:41Z
comment: Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength.

cryospheric layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: is part of
    some values from: cryosphere
subclass of: layer
subclass of: astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: cryosphere
definition: A layer which is part of a cryosphere.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-04-09T13:05:25Z
in subset: envoPolar

ice-bearing permafrost
type: Class
equivalent class: Class
  intersection of: permafrost
  intersection of: Restriction
    on property: has part
    some values from: water ice
subclass of: permafrost
subclass of: Restriction
  on property: has part
  some values from: water ice
definition: Permafrost which contains inclusions of water-based ice.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-04-09T13:45:40Z

snow accumulation process
type: Class
subclass of: material accumulation process
subclass of: biological_process
subclass of: Restriction
  on property: has participant
  some values from: surface layer
subclass of: Restriction
  on property: has participant
  some values from: snow
subclass of: Restriction
  on property: results in formation of
  some values from: snow mass
definition: A material accumulation process during which the mass of snow on a surface increases.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-04-24T18:29:18Z
has db xref: http://sweetontology.net/phenCryo/Accumulation
comment: This term is used both as a process and as an amount of mass added. Semantically speaking these are two distinct concepts (e.g., accumulation results in accumulation_amount of ice or snow gain), though accumulation_amount would more likely be an attribute. The scope of this term varies depending on the definition. Some definitions constrain themselves snow or ice added to glaciers; while others also include ice fields, snow cover, and/or floating ice. How to resolve this depends on the scope desired. Some definitions include additional discussion of the the physics involved which would be useful for connecting glacier ontologies to atmospheric, hydrologic, etc. ontologies. This information should be captured no matter how the inconsistencies above are resolved.

Axiom
annotated source: snow accumulation process
annotated property: definition
annotated target: A material accumulation process during which the mass of snow on a surface increases.
has db xref: https://orcid.org/0000-0003-4808-4736

ice accumulation process
type: Class
subclass of: hydrological process
subclass of: material accumulation process
subclass of: Class
  intersection of: Restriction
    on property: has part
    some values from: Class
      union of: freezing
      union of: material transport process
  intersection of: Restriction
    on property: has participant
    some values from: water ice
definition: A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-04-24T18:48:53Z
has db xref: http://sweetontology.net/phenCryo/Accumulation

Axiom
annotated source: ice accumulation process
annotated property: definition
annotated target: A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass.
has db xref: https://orcid.org/0000-0003-4808-4736

snow and ice accumulation process
type: Class
equivalent class: Class
  intersection of: material accumulation process
  intersection of: Restriction
    on property: results in formation of
    some values from: mass of ice and snow
subclass of: hydrological process
subclass of: Class
  intersection of: snow accumulation process
  intersection of: Restriction
    on property: has part
    some values from: ice accumulation process
subclass of: Restriction
  on property: results in formation of
  some values from: mass of ice and snow
definition: A material accumulation process during which a accumulation of snow and ice forms or increases in mass.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-04-24T18:59:45Z
has db xref: http://sweetontology.net/phenCryo/Accumulation

Axiom
annotated source: snow and ice accumulation process
annotated property: definition
annotated target: A material accumulation process during which a accumulation of snow and ice forms or increases in mass.
has db xref: https://orcid.org/0000-0003-4808-4736

mass of ice and snow
type: Class
equivalent class: Class
  intersection of: mass of compounded environmental materials
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      intersection of: water ice
      intersection of: snow
subclass of: ice mass
subclass of: Class
  intersection of: snow mass
  intersection of: Restriction
    on property: has part
    some values from: ice mass
subclass of: Restriction
  on property: formed as result of
  some values from: snow and ice accumulation process
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: water ice
    intersection of: snow
definition: A object which is composed primarily of water-based snow and ice.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-04-24T19:08:03Z
has db xref: http://sweetontology.net/phenCryo/Accumulation

formation of a solid aerosol from liquid material in an atmosphere
type: Class
equivalent class: Class
  intersection of: formation of a solid aerosol in an atmosphere
  intersection of: Restriction
    on property: has input
    some values from: liquid environmental material
  intersection of: Restriction
    on property: has output
    some values from: aerosolised solids
subclass of: formation of a solid aerosol in an atmosphere
subclass of: Restriction
  on property: has input
  some values from: liquid environmental material
definition: A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-05-30T21:07:51Z
has broad synonym: atmospheric formation of a solid aerosol
has broad synonym: formation of a solid aerosol in an atmosphere
has broad synonym: formation of a solid aerosol in the atmosphere
has exact synonym: formation of solid particles from liquid material in an atmosphere
in subset: envoAtmo

Axiom
annotated source: formation of a solid aerosol from liquid material in an atmosphere
annotated property: definition
annotated target: A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
has db xref: https://en.wikipedia.org/wiki/Particulates

gaseous part of an atmosphere
type: Class
equivalent class: Class
  intersection of: gaseous astronomical body part
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
subclass of: gaseous astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: atmosphere
definition: That part of an atmosphere which is composed of gaseous material.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-06-02T07:52:47Z
has db xref: S23C013

amorphous solid
type: Class
equivalent class: Class
  intersection of: solid environmental material
  intersection of: Restriction
    on property: has quality
    some values from: Class
      union of: PATO_0001332
      union of: PATO_0001412
subclass of: solid environmental material
subclass of: Restriction
  on property: has quality
  some values from: Class
    union of: PATO_0001332
    union of: PATO_0001412
definition: A solid material which does not have a regularly organised internal structure.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-06-02T11:07:47Z
has db xref: S23C014

atmospheric aerosol
type: Class
equivalent class: Class
  intersection of: aerosol
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
subclass of: aerosol
subclass of: Restriction
  on property: is part of
  some values from: atmosphere
definition: An aerosol that is suspended in an atmosphere.
creator: https://orcid.org/0000-0002-4366-3088
creation date: 2019-06-03T12:24:09Z
has db xref: S23C005

aerosol formation process
type: Class
equivalent class: Class
  intersection of: material transformation process
  intersection of: Restriction
    on property: has output
    some values from: aerosol
subclass of: material transformation process
subclass of: Restriction
  on property: has part
  some values from: aerosolised particle formation process
subclass of: Restriction
  on property: has output
  some values from: aerosol
definition: A material transformation process during which solid or liquid particles form and are suspended in a mass of air, thus creating an aerosol.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-06-24T13:43:29Z

fluid surface layer
type: Class
equivalent class: Class
  intersection of: surface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: gaseous environmental material
      union of: liquid environmental material
subclass of: surface layer
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: gaseous environmental material
    union of: liquid environmental material
definition: A surface layer which is composed primarily of some liquid or gas.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T08:28:42Z

fluid interface layer
type: Class
equivalent class: Class
  intersection of: interface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: gaseous environmental material
      union of: liquid environmental material
subclass of: interface layer
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: gaseous environmental material
    union of: liquid environmental material
definition: A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-07-22T17:29:44Z

Axiom
annotated source: fluid interface layer
annotated property: definition
annotated target: A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface.
has db xref: Interface

fluid layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: gaseous environmental material
      union of: liquid environmental material
subclass of: layer
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: gaseous environmental material
    union of: liquid environmental material
definition: A layer which is composed primarily of some fluid.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-07-22T17:35:08Z

fluid front
type: Class
subclass of: fluid interface layer
definition: A fluid interface which separates two fluid masses with differing properties.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-07-22T17:43:32Z

Axiom
annotated source: fluid front
annotated property: definition
annotated target: A fluid interface which separates two fluid masses with differing properties.
has db xref: Front
has db xref: home.rxml
has db xref: Weather front
has db xref: Front (oceanography)

gaseous front
type: Class
equivalent class: Class
  intersection of: fluid front
  intersection of: Restriction
    on property: composed primarily of
    some values from: gaseous environmental material
subclass of: fluid layer
subclass of: fluid front
subclass of: Restriction
  on property: composed primarily of
  some values from: gaseous environmental material
definition: A fluid front which is composed primarily of gaseous material and separates at least two gaseous masses.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-07-22T17:50:08Z

weather front
type: Class
equivalent class: Class
  intersection of: gaseous front
  intersection of: Restriction
    on property: is part of
    some values from: atmosphere
  intersection of: Restriction
    on property: composed primarily of
    some values from: air
subclass of: atmospheric layer
subclass of: gaseous front
subclass of: Restriction
  on property: composed primarily of
  some values from: air
subclass of: Restriction
  on property: causal agent in process
  some values from: atmospheric process
subclass of: Restriction
  on property: adjacent to
  min qualified cardinality: 2
  on class: air mass
definition: A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-07-22T17:57:21Z
has exact synonym: meteorological front
in subset: envoAtmo
comment: This class refers to Earth's weather fronts. Other forms, not composed of air, are present on other planets and can be created on request. Note: "Since the temperature distribution is the most important regulator of atmospheric density, a front almost invariably separates air masses of different temperature. Along with the basic density criterion and the common temperature criterion, many other features may distinguish a front, such as a pressure trough, a change in wind direction, a moisture discontinuity, and certain characteristic cloud and precipitation forms."

Axiom
annotated source: weather front
annotated property: definition
annotated target: A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
has db xref: Front
has db xref: Weather front

Axiom
annotated source: weather front
annotated property: comment
annotated target: This class refers to Earth's weather fronts. Other forms, not composed of air, are present on other planets and can be created on request. Note: "Since the temperature distribution is the most important regulator of atmospheric density, a front almost invariably separates air masses of different temperature. Along with the basic density criterion and the common temperature criterion, many other features may distinguish a front, such as a pressure trough, a change in wind direction, a moisture discontinuity, and certain characteristic cloud and precipitation forms."
has db xref: Front

air mass
type: Class
equivalent class: Class
  intersection of: mass of gas
  intersection of: Restriction
    on property: composed primarily of
    some values from: air
subclass of: mass of gas
subclass of: Restriction
  on property: composed primarily of
  some values from: air
definition: An object which is composed of a continuous mass of air.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T07:54:32Z
in subset: envoAtmo

gaseous surface layer
type: Class
equivalent class: Class
  intersection of: fluid surface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: gaseous environmental material
subclass of: fluid surface layer
subclass of: fluid interface layer
subclass of: fluid layer
subclass of: Restriction
  on property: composed primarily of
  some values from: gaseous environmental material
definition: A fluid surface layer which is composed primarily of some gaseous material.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T08:30:01Z

interface layer
type: Class
subclass of: layer
definition: A layer which separates two portions of environmental material which possess 1) differing compositions, 2) a discontinuity of some property, or 3) some derivative of some property in a direction normal to the interface.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T09:28:10Z

mass of environmental material
type: Class
equivalent class: Class
  intersection of: object
  intersection of: Restriction
    on property: composed primarily of
    some values from: environmental material
subclass of: object
subclass of: Restriction
  on property: composed primarily of
  some values from: environmental material
definition: An object which is composed primarily of an environmental material
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T09:38:29Z
comment: This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.

mass of solid material
type: Class
equivalent class: Class
  intersection of: mass of environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: solid environmental material
subclass of: mass of environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: solid environmental material
definition: An mass of environmental material which is composed primarily of a solid environmental material
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T09:41:27Z
comment: This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.

mass of fluid
type: Class
equivalent class: Class
  intersection of: mass of environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: gaseous environmental material
      union of: liquid environmental material
subclass of: mass of environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: gaseous environmental material
    union of: liquid environmental material
definition: An object which is composed primarily of a fluid.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T09:42:35Z
has exact synonym: fluid mass
comment: This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.

mass of gas
type: Class
equivalent class: Class
  intersection of: mass of fluid
  intersection of: Restriction
    on property: composed primarily of
    some values from: gaseous environmental material
subclass of: mass of fluid
subclass of: Restriction
  on property: composed primarily of
  some values from: gaseous environmental material
definition: An object which is composed primarily of a gas.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T09:44:01Z
has exact synonym: gaseous mass
comment: This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.

mass of liquid
type: Class
equivalent class: Class
  intersection of: mass of fluid
  intersection of: Restriction
    on property: composed primarily of
    some values from: liquid environmental material
subclass of: mass of fluid
subclass of: Restriction
  on property: composed primarily of
  some values from: liquid environmental material
definition: An object which is composed primarily of a liquid.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T09:45:03Z
has exact synonym: liquid mass
comment: This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.

mass of compounded environmental materials
type: Class
equivalent class: Class
  intersection of: mass of environmental material
  intersection of: Restriction
    on property: composed primarily of
    min qualified cardinality: 2
    on class: environmental material
subclass of: mass of environmental material
definition: An mass of environmental materials which has appreciable quantities of several individual materials, such that the removal of one would convert the mass into a different entity.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T09:47:10Z

polar front
type: Class
subclass of: weather front
definition: A weather front which separates air masses of tropical and polar origin.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T13:46:42Z
in subset: envoAtmo
in subset: envoPolar

Axiom
annotated source: polar front
annotated property: definition
annotated target: A weather front which separates air masses of tropical and polar origin.
has db xref: Polar front

tropical environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: has quality
    some values from: tropical
subclass of: environmental system
subclass of: Restriction
  on property: has quality
  some values from: tropical
definition: An environment which has a climate with continually high temperatures and with considerable precipitation, at least during part of the year.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T13:58:38Z

Axiom
annotated source: tropical environment
annotated property: definition
annotated target: An environment which has a climate with continually high temperatures and with considerable precipitation, at least during part of the year.
has db xref: Tropical climate

subtropical environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: has quality
    some values from: subtropical
subclass of: environmental system
subclass of: Restriction
  on property: has quality
  some values from: subtropical
definition: An environment which has a climate with warm temperatures and with meagre precipitation.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T14:50:35Z

Axiom
annotated source: subtropical environment
annotated property: definition
annotated target: An environment which has a climate with warm temperatures and with meagre precipitation.
has db xref: Tropical climate

polar environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: has quality
    some values from: polar
subclass of: environmental system
subclass of: Restriction
  on property: has quality
  some values from: polar
definition: An environment which is located in a part of an astronomical body subject to polar climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T14:53:26Z

Axiom
annotated source: polar environment
annotated property: definition
annotated target: An environment which is located in a part of an astronomical body subject to polar climatic conditions.
has db xref: Polar climate

subpolar environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: has quality
    some values from: subpolar
subclass of: environmental system
subclass of: Restriction
  on property: has quality
  some values from: subpolar
definition: An environment which is located in a part of an astronomical body subject to subpolar climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T16:37:32Z

Axiom
annotated source: subpolar environment
annotated property: definition
annotated target: An environment which is located in a part of an astronomical body subject to subpolar climatic conditions.
has db xref: Polar climate

temperate environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: has quality
    some values from: temperate
subclass of: environmental system
subclass of: Restriction
  on property: has quality
  some values from: temperate
definition: An environment which is located in a part of an astronomical body subject to temperate climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-08-20T16:41:52Z

Axiom
annotated source: temperate environment
annotated property: definition
annotated target: An environment which is located in a part of an astronomical body subject to temperate climatic conditions.
has db xref: Temperate climate

mass fluid flow
type: Class
subclass of: advective transport process
subclass of: Restriction
  on property: has participant
  some values from: fluid environmental material
definition: An advective transport process during which a fluid moves.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-09-05T05:47:26Z

straight-line wind
type: Class
subclass of: atmospheric wind
definition: A wind storm during which strong gusts of wind occur, transporting atmospheric gas in a linear fashion.
creator: https://orcid.org/0000-0002-3410-4655
creator: https://orcid.org/0000-0002-3884-3420
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-09-05T06:04:47Z
has exact synonym: hurricane of the prairie
has exact synonym: plough winds
has exact synonym: thundergust

Axiom
annotated source: straight-line wind
annotated property: definition
annotated target: A wind storm during which strong gusts of wind occur, transporting atmospheric gas in a linear fashion.
has db xref: Straight-line winds

structural collapse process
type: Class
subclass of: energy transfer process
definition: A process during which the ability of a material entity to maintain its internal organisation fails, resulting in deformation and a breakdown of that organisation.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-07T10:08:24Z
comment: This is a very general concept, and should likely be elevated to OBO Core rather than held in ENVO.

Axiom
annotated source: structural collapse process
annotated property: definition
annotated target: A process during which the ability of a material entity to maintain its internal organisation fails, resulting in deformation and a breakdown of that organisation.
has db xref: Structural failure

subsurface zone of an astronomical body
type: Class
subclass of: environmental zone
subclass of: astronomical body part
subclass of: Restriction
  on property: adjacent to
  some values from: Class
    complement of: Class
      union of: atmosphere
      union of: outer space
definition: An environmental zone which includes those regions of an astronomical body which are not exposed to its atmosphere or space.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-07T14:22:38Z

desert ecosystem
type: Class
subclass of: astronomical body part
subclass of: ecosystem
definition: An ecosystem in which the composition, structure, and function of resident ecological assemblages are primarily determined by a desert.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-17T08:21:08Z

part of a landmass
type: Class
equivalent class: Class
  intersection of: solid astronomical body part
  intersection of: Restriction
    on property: is part of
    some values from: planetary landmass
subclass of: solid astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: planetary landmass
definition: A solid astronomical body part which is part of the landmass of that body.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-17T08:27:17Z

landmass
type: Class
subclass of: land
definition: A large continuous area of land, either surrounded by sea or contiguous with another landmass.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-17T08:31:26Z

Axiom
annotated source: landmass
annotated property: definition
annotated target: A large continuous area of land, either surrounded by sea or contiguous with another landmass.
definition source: landmass

compound astronomical body part
type: Class
equivalent class: Class
  intersection of: astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: gaseous environmental material
      union of: solid environmental material
      union of: liquid environmental material
subclass of: astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: gaseous environmental material
    union of: solid environmental material
    union of: liquid environmental material
definition: A part of an astronomical body which is composed of a continuous medium bearing liquid, gaseous, and solid material in variable quantities.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-17T08:36:00Z

Axiom
annotated source: compound astronomical body part
annotated property: definition
annotated target: A part of an astronomical body which is composed of a continuous medium bearing liquid, gaseous, and solid material in variable quantities.
has db xref: https://en.wikipedia.org/wiki/Landform

land
type: Class
subclass of: solid astronomical body part
subclass of: solid surface layer
subclass of: surface of an astronomical body
definition: A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-21T10:42:26Z

Axiom
annotated source: land
annotated property: definition
annotated target: A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
has db xref: land

aquatic ecosystem
type: Class
subclass of: astronomical body part
subclass of: ecosystem
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-21T11:05:45Z

marine ecosystem
type: Class
subclass of: marine environment
subclass of: aquatic ecosystem
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-21T11:06:11Z

terrestrial ecosystem
type: Class
subclass of: astronomical body part
subclass of: environmental system determined by a quality
subclass of: ecosystem
definition: An ecosystem which primarily occurs on land.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-21T11:09:58Z

tropical broadleaf forest
type: Class
subclass of: broadleaf forest
subclass of: tropical forest
definition: A broadleaf forest which is subject to tropical climate conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-21T11:38:45Z

temperate broadleaf forest
type: Class
subclass of: broadleaf forest
subclass of: temperate forest
definition: A broadleaf forest which is subject to temperate climate conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-21T11:42:38Z

ecosystem process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: process has causal agent
    some values from: ecosystem
subclass of: environmental system process
subclass of: Restriction
  on property: process has causal agent
  some values from: ecosystem
definition: An environmental process either driven by or primarily impacting the parts or emergent properties of an ecosystem.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-21T11:52:55Z

temperate mixed forest
type: Class
equivalent class: Class
  intersection of: mixed forest
  intersection of: Restriction
    on property: has quality
    some values from: temperate
subclass of: mixed forest
subclass of: temperate forest
definition: A mixed forest which is subject to temperate climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T15:52:50Z

tropical mixed forest
type: Class
equivalent class: Class
  intersection of: mixed forest
  intersection of: Restriction
    on property: has quality
    some values from: tropical
subclass of: mixed forest
subclass of: tropical forest
definition: A mixed forest which is subject to tropical climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T16:02:01Z

tropical mixed forest biome
type: Class
equivalent class: Class
  intersection of: tropical mixed forest
  intersection of: Restriction
    on property: participates in
    some values from: climactic ecological succession
subclass of: mixed forest biome
subclass of: tropical mixed forest
subclass of: tropical biome
definition: A tropical mixed forest in which dominant ecological communities have reached their climax successional state.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T16:05:39Z
in subset: wwfBiome

tropical forest
type: Class
equivalent class: Class
  intersection of: forest ecosystem
  intersection of: Restriction
    on property: has quality
    some values from: tropical
subclass of: forest ecosystem
subclass of: tropical environment
definition: A forest ecosystem which is subject to tropical climate conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T16:43:20Z
comment: This class is primarily to be populated by inference.

subtropical forest
type: Class
equivalent class: Class
  intersection of: forest ecosystem
  intersection of: Restriction
    on property: has quality
    some values from: subtropical
subclass of: forest ecosystem
subclass of: subtropical environment
definition: A forest ecosystem which is subject to subtropical climate conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T16:45:16Z
comment: This class is primarily to be populated by inference.

temperate forest
type: Class
equivalent class: Class
  intersection of: forest ecosystem
  intersection of: Restriction
    on property: has quality
    some values from: temperate
subclass of: forest ecosystem
subclass of: temperate environment
definition: A forest ecosystem which is subject to temperate climate conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T16:46:49Z
comment: This class is primarily to be populated by inference.

tropical grassland
type: Class
equivalent class: Class
  intersection of: grassland ecosystem
  intersection of: Restriction
    on property: has quality
    some values from: tropical
subclass of: grassland ecosystem
subclass of: tropical environment
definition: A grassland ecosystem which is subject to tropical climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T16:58:09Z

subtropical grassland
type: Class
equivalent class: Class
  intersection of: grassland ecosystem
  intersection of: Restriction
    on property: has quality
    some values from: subtropical
subclass of: grassland ecosystem
subclass of: subtropical environment
definition: A grassland which is subject to subtropical climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T17:00:35Z

temperate grassland
type: Class
subclass of: grassland ecosystem
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-27T17:00:35Z

construction
type: Class
subclass of: material entity
definition: A material entity which has been assembled through the intentional, instinctual, or deliberately programmed efforts of an organism or machine.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-29T14:50:34Z

organic object
type: Class
equivalent class: Class
  intersection of: object
  intersection of: Restriction
    on property: formed as result of
    some values from: biological_process
  intersection of: Restriction
    on property: composed primarily of
    some values from: organic material
subclass of: mass of environmental material
subclass of: Restriction
  on property: formed as result of
  some values from: biological_process
subclass of: Restriction
  on property: composed primarily of
  some values from: organic material
definition: An object which is formed as a result of one or more biological processes and is composed primarily of organic material.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-10-29T15:02:58Z

ecological succession
type: Class
subclass of: ecosystem process
definition: An ecosystem process during which the species composition of an ecosystem gradually changes as species which are more adapted to the prevailing conditions in the ecosystem replace those which are less adapted.
creator: http://orcid.org/0000-0002-4366-3088
date: 2023-09-07T13:10:32Z

Axiom
annotated source: ecological succession
annotated property: definition
annotated target: An ecosystem process during which the species composition of an ecosystem gradually changes as species which are more adapted to the prevailing conditions in the ecosystem replace those which are less adapted.
has db xref: Ecological succession

climactic ecological succession
type: Class
subclass of: ecological succession
definition: An ecological succession process during which 1) organisms in ecological communities possess high adaptation to the conditions in the ecosystem, 2) participant communities largely fill available niches, 3) individual organisms are typically replaced by others of the same species, 4) a near equilibrium is maintained between gross primary production and total respiration and across biogeochemical cycles.
creator: http://orcid.org/0000-0002-4366-3088
date: 2023-09-07T13:35:09Z

Axiom
annotated source: climactic ecological succession
annotated property: definition
annotated target: An ecological succession process during which 1) organisms in ecological communities possess high adaptation to the conditions in the ecosystem, 2) participant communities largely fill available niches, 3) individual organisms are typically replaced by others of the same species, 4) a near equilibrium is maintained between gross primary production and total respiration and across biogeochemical cycles.
has db xref: Ecological succession

anthropised ecosystem
type: Class
equivalent class: Class
  intersection of: ecosystem
  intersection of: Restriction
    on property: formed as result of
    some values from: anthropisation
subclass of: anthropogenic environment
subclass of: ecosystem
definition: An ecosystem which is formed as a result of human activity or impact.
creator: http://orcid.org/0000-0002-4366-3088
date: 2023-09-07T16:56:05Z

human settlement
type: Class
subclass of: astronomical body part
subclass of: animal-associated environment
subclass of: environment associated with an animal part or small animal
subclass of: anthropised ecosystem
definition: An anthropised ecosystem which is determined by the presence of humans and their constructions.
creator: http://orcid.org/0000-0002-4366-3088
date: 2023-09-07T16:58:25Z

tropical biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: tropical
subclass of: biome
subclass of: tropical environment
definition: A biome which is subject to tropical climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-11-06T15:56:17Z

temperate biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: temperate
subclass of: biome
subclass of: temperate environment
definition: A biome which is subject to temperate climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-11-06T15:57:04Z

subtropical biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: subtropical
subclass of: biome
subclass of: subtropical environment
definition: A biome which is subject to subtropical climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-11-06T15:57:36Z

subpolar biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: subpolar
subclass of: biome
subclass of: subpolar environment
definition: A biome which is subject to subpolar climatic conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-11-06T15:58:56Z

alpine biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: alpine
subclass of: biome
subclass of: Restriction
  on property: has quality
  some values from: alpine
definition: A biome which is subject to alpine altitudinal conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-11-06T15:59:35Z

montane biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: montane
subclass of: biome
subclass of: Restriction
  on property: has quality
  some values from: montane
definition: A biome which is subject to montane altitudinal conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-11-06T16:00:33Z

arid biome
type: Class
equivalent class: Class
  intersection of: biome
  intersection of: Restriction
    on property: has quality
    some values from: arid
subclass of: biome
subclass of: Restriction
  on property: has quality
  some values from: arid
definition: A biome which is subject to arid environmental conditions.
creator: https://orcid.org/0000-0002-4366-3088
date: 2019-11-06T16:06:47Z

energy transfer process
type: Class
subclass of: environmental system process
definition: A process during which one entity loses energy to another entity.
creator: https://orcid.org/0000-0002-4366-3088
date: 2020-02-13T13:34:28Z

liquid accumulation process
type: Class
equivalent class: Class
  intersection of: material accumulation process
  intersection of: Restriction
    on property: has participant
    some values from: liquid environmental material
subclass of: material accumulation process
subclass of: Restriction
  on property: has participant
  some values from: liquid environmental material
definition: A material accumulation process during which the volume of liquid entity increases.
creator: https://orcid.org/0000-0002-4366-3088
date: 2020-05-18T14:39:20Z

wind gust
type: Class
subclass of: atmospheric wind
definition: An atmospheric wind which 1) has an increased rate relative to other winds in the same region and 2) is followed by a lull.
creator: https://orcid.org/0000-0002-4366-3088
date: 2020-05-19T21:47:51Z
has broad synonym: gust
comment: According to U.S. weather observing practice, gusts are reported when the peak wind speed reaches at least 16 knots and the variation in wind speed between the peaks and lulls is at least 9 knots. The duration of a gust is usually less than 20 seconds.

Axiom
annotated source: wind gust
annotated property: definition
annotated target: An atmospheric wind which 1) has an increased rate relative to other winds in the same region and 2) is followed by a lull.
has db xref: Gust
has db xref: Wind gust

Axiom
annotated source: wind gust
annotated property: comment
annotated target: According to U.S. weather observing practice, gusts are reported when the peak wind speed reaches at least 16 knots and the variation in wind speed between the peaks and lulls is at least 9 knots. The duration of a gust is usually less than 20 seconds.
has db xref: Gust

concentration of carbon dioxide in an atmosphere
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: carbon dioxide
      intersection of: Restriction
        on property: is part of
        some values from: atmosphere
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: carbon dioxide
    intersection of: Restriction
      on property: is part of
      some values from: atmosphere
definition: The concentration of carbon dioxide when measured in air that is part of an atmosphere.
creator: https://orcid.org/0000-0002-4366-3088
date: 2020-05-19T22:51:38Z
in subset: envoAtmo
in subset: envoNceas

surface landform
type: Class
subclass of: landform
definition: A landform which occurs on the surface of an astronomical body.
creator: https://orcid.org/0000-0002-4366-3088
date: 2021-05-15T09:16:23Z
has_related_synonym: geographic feature
comment: The usage of "surface" here aligns with that of planetary surface: in contact with the atmosphere or space. The extent of the "surface" can vary. For rocky planets like Earth, astrogeologists consider the crust as the surface.

landform
type: Class
subclass of: solid astronomical body part
definition: A solid astronomical body part which has been formed from and is composed primarily of the matter of that astronomical body.
creator: https://orcid.org/0000-0002-4366-3088
date: 2021-05-15T09:40:37Z
comment: Landforms may be natural or anthropogenic. This term has often has loose usage when referencing entities which are either subterranean or submerged below water bodies. In some cases, oceans themselves are considered landforms. Here, we have provided subclasses to resolve this ambiguity, but place oceans and other water bodies elsewhere.In later revisions, this hiearchy is likely to be reordered based on the formation processes of the entities within it.

Axiom
annotated source: landform
annotated property: definition
annotated target: A solid astronomical body part which has been formed from and is composed primarily of the matter of that astronomical body.
has db xref: Landform

water-holding capacity
type: Class
subclass of: disposition
subclass of: Restriction
  on property: characteristic of
  some values from: material entity
definition: A disposition of a material entity which is realised when it is saturated with liquid water.
creator: https://orcid.org/0000-0002-4366-3088

particle
type: Class
subclass of: mass of solid material
subclass of: Restriction
  on property: is part of
  some values from: particulate environmental material
subclass of: Restriction
  on property: surrounded by
  some values from: Class
    union of: gaseous environmental material
    union of: liquid environmental material
definition: A mass of solid material which is either 1) a minute fragment of a larger mass or 2) one of a collection of small masses composing an aggregate.
has_related_synonym: grain

Axiom
annotated source: particle
annotated property: definition
annotated target: A mass of solid material which is either 1) a minute fragment of a larger mass or 2) one of a collection of small masses composing an aggregate.
has db xref: particle

particle of clay
type: Class
subclass of: particle
subclass of: Class
  union of: Restriction
    on property: is part of
    some values from: clay
  union of: Restriction
    on property: derives from part of
    some values from: clay
definition: A particle which 1) is composed primarily of hydrous aluminium phyllosilicate minerals, in turn composed of aluminium and silicon ions bonded into tiny, thin plates by interconnecting oxygen and hydroxide ions, and 2) is or was part of a portion of clay.
has exact synonym: clay particle
comment: The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam.

Axiom
annotated source: particle of clay
annotated property: definition
annotated target: A particle which 1) is composed primarily of hydrous aluminium phyllosilicate minerals, in turn composed of aluminium and silicon ions bonded into tiny, thin plates by interconnecting oxygen and hydroxide ions, and 2) is or was part of a portion of clay.
has db xref: Properties

Axiom
annotated source: particle of clay
annotated property: comment
annotated target: The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam.
has db xref: Properties

convective transport process
type: Class
equivalent class: Class
  intersection of: material transport process
  intersection of: Restriction
    on property: bearer of
    some values from: convective
subclass of: material transport process
subclass of: Restriction
  on property: bearer of
  some values from: convective
definition: A material transport process which arises spontaneously due to physical heterogeneities in a portion of a material and forces which act throughout its volume.
comment: Most commonly, convective flows are generated by heterogeneities in density or the effects of gravity. When the cause of the convection is unspecified, convection due to the effects of thermal expansion and buoyancy can be assumed. Convection frequently occurs in fluids, but may also take place in soft solids or mixtures where particles can flow.

Axiom
annotated source: convective transport process
annotated property: definition
annotated target: A material transport process which arises spontaneously due to physical heterogeneities in a portion of a material and forces which act throughout its volume.
has db xref: Convection

Axiom
annotated source: convective transport process
annotated property: comment
annotated target: Most commonly, convective flows are generated by heterogeneities in density or the effects of gravity. When the cause of the convection is unspecified, convection due to the effects of thermal expansion and buoyancy can be assumed. Convection frequently occurs in fluids, but may also take place in soft solids or mixtures where particles can flow.
has db xref: Convection

convective
type: Class
subclass of: PATO_0002062
definition: A physical quality of a process which is characteristic of processes that transport material within a volume due to the combined effects of material property heterogeneity and body forces across that volume.
creator: https://orcid.org/0000-0002-4366-3088

Axiom
annotated source: convective
annotated property: definition
annotated target: A physical quality of a process which is characteristic of processes that transport material within a volume due to the combined effects of material property heterogeneity and body forces across that volume.
has db xref: Convection

advective
type: Class
subclass of: PATO_0002062
definition: A physical quality of a process which is characteristic of process that transport material without, themselves, changing the qualities of those materials or the processes that are unfolding within them.
creator: https://orcid.org/0000-0002-4366-3088

Axiom
annotated source: advective
annotated property: definition
annotated target: A physical quality of a process which is characteristic of process that transport material without, themselves, changing the qualities of those materials or the processes that are unfolding within them.
has db xref: Advection

material diffusion process
type: Class
subclass of: material transport process
definition: A material transport process during which material moves from a region of higher concentration to a region of lower concentration.
has broad synonym: diffusion
comment: Diffusion is also applied to the movement of energy, thus the more specific label. This class will be repositioned (but with the core of its definition intact) if we include other forms of diffusion in ENVO.

Axiom
annotated source: material diffusion process
annotated property: definition
annotated target: A material transport process during which material moves from a region of higher concentration to a region of lower concentration.
has db xref: Diffusion

coal
type: Class
subclass of: sedimentary rock
subclass of: Restriction
  on property: has quality
  some values from: PATO_0015022
subclass of: Restriction
  on property: has role
  some values from: fossil fuel
definition: A combustible black or brownish-black sedimentary rock usually occurring in rock strata in layers or veins called coal beds or coal seams.
creator: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: coal
annotated property: definition
annotated target: A combustible black or brownish-black sedimentary rock usually occurring in rock strata in layers or veins called coal beds or coal seams.
has db xref: Coal

iron mine
type: Class
equivalent class: Class
  intersection of: mine
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: material extraction process
      intersection of: Restriction
        on property: has output
        some values from: iron ore
subclass of: mine
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: material extraction process
    intersection of: Restriction
      on property: has output
      some values from: iron ore
creator: https://orcid.org/0000-0002-6601-2165

uranium mine
type: Class
equivalent class: Class
  intersection of: mine
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: material extraction process
      intersection of: Restriction
        on property: has output
        some values from: uranium ore
subclass of: mine
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: material extraction process
    intersection of: Restriction
      on property: has output
      some values from: uranium ore
creator: https://orcid.org/0000-0002-6601-2165
has db xref: Uranium mining

ore
type: Class
subclass of: rock
definition: a type of rock that contains sufficient minerals with important elements including metals that can be economically extracted from the rock.
creator: https://orcid.org/0000-0002-6601-2165
has db xref: Ore

uranium ore
type: Class
equivalent class: Class
  intersection of: ore
  intersection of: Restriction
    on property: has part
    some values from: uranium molecular entity
subclass of: ore
subclass of: Restriction
  on property: has part
  some values from: uranium molecular entity
definition: Ore which contains uranium.
creator: https://orcid.org/0000-0002-6601-2165
comment: The primary uranium ore mineral is uraninite

iron ore
type: Class
equivalent class: Class
  intersection of: ore
  intersection of: Restriction
    on property: has part
    some values from: iron molecular entity
subclass of: ore
subclass of: Restriction
  on property: has part
  some values from: iron molecular entity
creator: https://orcid.org/0000-0002-6601-2165

gold ore
type: Class
equivalent class: Class
  intersection of: ore
  intersection of: Restriction
    on property: has part
    some values from: gold molecular entity
subclass of: ore
subclass of: Restriction
  on property: has part
  some values from: gold molecular entity
creator: https://orcid.org/0000-0002-6601-2165

platinum ore
type: Class
equivalent class: Class
  intersection of: ore
  intersection of: Restriction
    on property: has part
    some values from: platinum molecular entity
subclass of: ore
subclass of: Restriction
  on property: has part
  some values from: platinum molecular entity
creator: https://orcid.org/0000-0002-6601-2165

coal dust
type: Class
equivalent class: Class
  intersection of: dust
  intersection of: Restriction
    on property: derives from
    some values from: coal
subclass of: dust
subclass of: Restriction
  on property: derives from
  some values from: coal
definition: Dust which is derived from coal.
creator: https://orcid.org/0000-0002-6601-2165

mineral dust
type: Class
equivalent class: Class
  intersection of: dust
  intersection of: Restriction
    on property: derives from
    some values from: mineral material
subclass of: dust
subclass of: mineral material
subclass of: Restriction
  on property: derives from
  some values from: mineral material
definition: Dust which is derived from mineral material.
creator: https://orcid.org/0000-0002-6601-2165

metallic dust
type: Class
equivalent class: Class
  intersection of: dust
  intersection of: Restriction
    on property: derives from
    some values from: metallic material
subclass of: dust
subclass of: Restriction
  on property: derives from
  some values from: metallic material
subclass of: Restriction
  on property: composed primarily of
  some values from: metallic material
definition: Dust which is composed primarily of some metallic material.
creator: https://orcid.org/0000-0002-6601-2165

cement dust
type: Class
equivalent class: Class
  intersection of: dust
  intersection of: Restriction
    on property: derives from
    some values from: masonry cement
subclass of: dust
subclass of: Restriction
  on property: derives from
  some values from: masonry cement
creator: https://orcid.org/0000-0002-6601-2165

clay dust
type: Class
equivalent class: Class
  intersection of: dust
  intersection of: Restriction
    on property: derives from
    some values from: clay
subclass of: dust
subclass of: Restriction
  on property: derives from
  some values from: clay
definition: Dust which is derived from clay material.
creator: https://orcid.org/0000-0002-6601-2165

dust from plant parts
type: Class
equivalent class: Class
  intersection of: dust
  intersection of: Restriction
    on property: derives from
    some values from: PO_0025131
subclass of: dust
subclass of: Restriction
  on property: derives from
  some values from: PO_0025131
creator: https://orcid.org/0000-0002-6601-2165

open-pit mine
type: Class
subclass of: mine
definition: A surface mine that utilizes a technique of extracting rock or minerals from the earth by their removal from an open pit or borrow.
creator: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: open-pit mine
annotated property: definition
annotated target: A surface mine that utilizes a technique of extracting rock or minerals from the earth by their removal from an open pit or borrow.
has db xref: Open-pit mining

nuclear reactor
type: Class
subclass of: human construction
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: realizes
      some values from: nuclear energy
definition: A human construction which is used to initiate and control a fission nuclear chain reaction or nuclear fusion reactions.
creator: https://orcid.org/0000-0002-6601-2165

Axiom
annotated source: nuclear reactor
annotated property: definition
annotated target: A human construction which is used to initiate and control a fission nuclear chain reaction or nuclear fusion reactions.
has db xref: https://en.wikipedia.org/wiki/Nuclear_reactor

nuclear power reactor
type: Class
subclass of: nuclear reactor
definition: A nuclear reactor which is used as a source of power.
creator: https://orcid.org/0000-0002-6601-2165
has exact synonym: power reactor

Axiom
annotated source: nuclear power reactor
annotated property: definition
annotated target: A nuclear reactor which is used as a source of power.
has db xref: https://en.wikipedia.org/wiki/Nuclear_reactor

fluid environmental material
type: Class
equivalent class: Class
  intersection of: environmental material
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: gaseous environmental material
      union of: plasma
      union of: liquid environmental material
subclass of: environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: gaseous environmental material
    union of: plasma
    union of: liquid environmental material
definition: An environmental material which is unable to resist shear forces and continuously deforms when subject to them.
has narrow synonym: fluid

Axiom
annotated source: fluid environmental material
annotated property: definition
annotated target: An environmental material which is unable to resist shear forces and continuously deforms when subject to them.
has db xref: Fluid
has db xref: https://github.com/EnvironmentOntology/envo/issues/940

environmental system process
type: Class
equivalent class: Class
  intersection of: process
  intersection of: Restriction
    on property: has participant
    some values from: Class
      union of: environmental material
      union of: environmental system
      union of: astronomical body
      union of: astronomical object
      union of: astronomical body part
subclass of: process
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: environmental material
    union of: environmental system
    union of: astronomical body
    union of: astronomical object
    union of: astronomical body part
definition: A process in which includes the components of an environmental system as participants.
comment: This is a convenience class for organisation and should not be used for annotation.

desertification
type: Class
equivalent class: Class
  intersection of: land degradation
  intersection of: Restriction
    on property: has output
    some values from: desert area
subclass of: land degradation
subclass of: Restriction
  on property: has input
  some values from: Class
    complement of: Class
      union of: desert area
      union of: desert biome
subclass of: Restriction
  on property: has output
  some values from: desert area
definition: A type of land degradation in which terrestrial ecosystem becomes increasingly dry, typically losing its bodies of water as well as vegetation and wildlife.

Axiom
annotated source: desertification
annotated property: definition
annotated target: A type of land degradation in which terrestrial ecosystem becomes increasingly dry, typically losing its bodies of water as well as vegetation and wildlife.
has db xref: Desertification

flooding
type: Class
subclass of: water flow process
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: material accumulation process
    intersection of: Restriction
      on property: has participant
      some values from: liquid water
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: material transport process
    intersection of: Restriction
      on property: has participant
      some values from: liquid water
subclass of: Restriction
  on property: has participant
  some values from: water body
subclass of: Restriction
  on property: has participant
  some values from: planetary landmass
definition: A general and temporary condition of partial or complete inundation of normally dry land areas from the overflow of inland and/or tidal waters, and/or the unusual and rapid accumulation or runoff of surface waters from any source. A great flow along a watercourse or a flow causing inundation of lands not normally covered by water.
in subset: environmental_hazards

Axiom
annotated source: flooding
annotated property: definition
annotated target: A general and temporary condition of partial or complete inundation of normally dry land areas from the overflow of inland and/or tidal waters, and/or the unusual and rapid accumulation or runoff of surface waters from any source. A great flow along a watercourse or a flow causing inundation of lands not normally covered by water.
has db xref: GEMET: http://www.eionet.europa.eu/gemet/concept/3301

atmospheric process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: occurs in
    some values from: atmosphere
subclass of: environmental system process
subclass of: Restriction
  on property: occurs in
  some values from: atmosphere
definition: A process which occurs within an atmosphere.
comment: This class will be populated by inference and is primarily organisational.

land degradation
type: Class
subclass of: ecosystem process
subclass of: Restriction
  on property: is part of
  some values from: land consumption process
subclass of: Restriction
  on property: has participant
  some values from: terrestrial biome
subclass of: Restriction
  on property: has participant
  some values from: planetary landmass
definition: A process which diminishes the functioning of an ecosystem located on land.
editor note: An SDGIO request. Likely to be refined and revised.
comment: This could include, for example, reducing soil health, pollinator activity, or an ecosystem's ability to sequester carbon.

Axiom
annotated source: land degradation
annotated property: definition
annotated target: A process which diminishes the functioning of an ecosystem located on land.
has db xref: http://www.who.int/globalchange/ecosystems/desert/en/
has db xref: https://en.wikipedia.org/wiki/Land_degradation

afforestation
type: Class
subclass of: planned revegetation
subclass of: Restriction
  on property: has input
  some values from: Class
    complement of: Class
      union of: forest biome
      union of: forest ecosystem
subclass of: Restriction
  on property: has output
  some values from: Class
    union of: forest biome
    union of: forest ecosystem
definition: Establishment of a new forest by seeding or planting of nonforested land.
comment: Prior to afforestation, the land cover of a region must not include forests.

Axiom
annotated source: afforestation
annotated property: definition
annotated target: Establishment of a new forest by seeding or planting of nonforested land.
has db xref: GEMET:http://www.eionet.europa.eu/gemet/concept/167

deforestation
type: Class
subclass of: ecosystem process
subclass of: Restriction
  on property: has input
  some values from: Class
    union of: forested area
    union of: forest biome
subclass of: Restriction
  on property: has output
  some values from: Class
    complement of: Class
      union of: forested area
      union of: forest biome
definition: An ecosystem process during which the flora and fauna belonging to a forest are removed or destroyed.
has broad synonym: clearance
has broad synonym: clearing

Axiom
annotated source: deforestation
annotated property: definition
annotated target: An ecosystem process during which the flora and fauna belonging to a forest are removed or destroyed.
has db xref: http://www.eionet.europa.eu/gemet/en/concept/2036

forest process
type: Class
equivalent class: Class
  intersection of: ecosystem process
  intersection of: Restriction
    on property: has participant
    some values from: forested area
subclass of: ecosystem process
subclass of: Restriction
  on property: has participant
  some values from: forested area
comment: To be populated through inference. Do not use for annotation.

forest area expansion
type: Class
equivalent class: Class
  intersection of: ecosystem process
  intersection of: Restriction
    on property: results in expansion of
    some values from: forested area
subclass of: ecosystem process
subclass of: Restriction
  on property: has part
  some values from: afforestation
subclass of: Restriction
  on property: results in expansion of
  some values from: forested area

anthropogenic modulatory intervention process
type: Class
equivalent class: Class
  intersection of: OBI_0000011
  intersection of: Restriction
    on property: regulates (processual)
    some values from: environmental system process
  intersection of: Restriction
    on property: process has causal agent
    some values from: NCBITaxon 9606
subclass of: OBI_0000011
subclass of: Restriction
  on property: regulates (processual)
  some values from: environmental system process
subclass of: Restriction
  on property: process has causal agent
  some values from: NCBITaxon 9606
definition: A process during which humans apply technology to alter the magnitude, duration, rate, or impact of an environmental process.
comment: Relabel the obo foundry unique label to be generic process

anthropogenic environmental process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: process has causal agent
    some values from: NCBITaxon 9606
subclass of: environmental system process
subclass of: Restriction
  on property: process has causal agent
  some values from: NCBITaxon 9606
definition: An environmental process which is driven by the action of humans.

planetary erosion
type: Class
subclass of: erosion
definition: An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
in subset: envoPolar

Axiom
annotated source: planetary erosion
annotated property: definition
annotated target: An action of exogenic processes (such as water flow or wind) which remove environmental material from one part of a planet's crust, transporting it to another location where it is deposited.
has db xref: https://en.wikipedia.org/wiki/Erosion

hydrological process
type: Class
equivalent class: Class
  intersection of: environmental system process
  intersection of: Restriction
    on property: has participant
    some values from: Class
      union of: liquid water
      union of: water vapour
      union of: water ice
subclass of: environmental system process
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: water
    union of: water vapour
    union of: water ice
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: liquid water
    union of: water vapour
    union of: water ice
definition: An environmental process which has water - in any of its states - as a participant.
comment: This classes asserted subclasses will be moved away as it should be an inferred class.

planned revegetation
type: Class
subclass of: active ecosystem management process
subclass of: Restriction
  on property: has output
  some values from: vegetated area
definition: A planned process during which human agents establish plant communities in ecosystems which have previously been, partially or wholly, stripped of existing plant communities.

environmental pollution
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has increased levels of
      some values from: Class
        intersection of: chemical entity
        intersection of: Restriction
definition: An environmental system process that results in the introduction of contaminants into an environment.
has exact synonym: pollution
in subset: environmental_hazards
comment: Pollutants may be material or immaterial (e.g. heat energy)

Axiom
annotated source: environmental pollution
annotated property: definition
annotated target: An environmental system process that results in the introduction of contaminants into an environment.
has db xref: Pollution

air pollution
type: Class
equivalent class: Class
  intersection of: environmental pollution
  intersection of: Restriction
    on property: occurs in
    some values from: air
subclass of: environmental pollution
subclass of: Restriction
  on property: occurs in
  some values from: air
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: environmental system
    intersection of: Restriction
      on property: has part
      some values from: air
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: environmental system
    intersection of: Restriction
      on property: has part
      some values from: contaminated air
definition: A pollution process during which particulates or other contaminants are released into a portion of air.
in subset: environmental_hazards
in subset: envoPolar

soil pollution
type: Class
equivalent class: Class
  intersection of: environmental pollution
  intersection of: Restriction
    on property: occurs in
    some values from: soil
subclass of: environmental pollution
subclass of: Restriction
  on property: occurs in
  some values from: soil
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: environmental system
    intersection of: Restriction
      on property: has part
      some values from: soil
subclass of: Restriction
  on property: has output
  some values from: contaminated soil
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: environmental system
    intersection of: Restriction
      on property: has part
      some values from: contaminated soil
definition: A pollution process during which contaminants are released into soil.
in subset: environmental_hazards
in subset: envoPolar

Axiom
annotated source: soil pollution
annotated property: definition
annotated target: A pollution process during which contaminants are released into soil.
has db xref: Soil pollution

water pollution
type: Class
equivalent class: Class
  intersection of: environmental pollution
  intersection of: Class
    union of: water body
    union of: Restriction
      on property: occurs in
      some values from: liquid water
subclass of: environmental pollution
subclass of: Restriction
  on property: has input
  some values from: Class
    intersection of: environmental system
    intersection of: Restriction
      on property: has part
      some values from: liquid water
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: environmental system
    intersection of: Restriction
      on property: has part
      some values from: contaminated water
definition: A pollution process during which contaminants are released into water.
in subset: environmental_hazards
in subset: envoPolar

environmental monitoring
type: Class
subclass of: OBI_0000011
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: environmental material
    union of: environmental system
    union of: astronomical body part
subclass of: Restriction
  on property: process has causal agent
  some values from: NCBITaxon 9606
definition: An process in which environmental parameters and variables are continually assayed.
has broad synonym: monitoring

pollution control
type: Class
equivalent class: Class
  intersection of: anthropogenic modulatory intervention process
  intersection of: Restriction
    on property: regulates (processual)
    some values from: environmental pollution
subclass of: anthropogenic modulatory intervention process
subclass of: Restriction
  on property: regulates (processual)
  some values from: environmental pollution
definition: A planned process during which the amount of pollutants released into an environmental system is regulated.
has narrow synonym: pollution prevention

pollution monitoring
type: Class
equivalent class: Class
  intersection of: environmental monitoring
  intersection of: Restriction
    on property: causally downstream of or within
    some values from: environmental pollution
subclass of: environmental monitoring
subclass of: Restriction
  on property: causally downstream of or within
  some values from: environmental pollution
definition: A monitoring process that assays the level of environmental pollutants to determine the presence of effect of environmental pollution.
in subset: envoPolar

compaction process
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: has output
  some values from: compacted soil
definition: A physical process during which atoms, molecules, or other consituents of a material entity are forced closer together.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar

Axiom
annotated source: compaction process
annotated property: definition
annotated target: A physical process during which atoms, molecules, or other consituents of a material entity are forced closer together.
has db xref: https://en.wikipedia.org/wiki/Compaction

material accumulation process
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: during which ends
  some values from: Class
    union of: material transport process
    union of: material transformation process
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001563
definition: A process during which the mass of one or more materials, present within a given site, increases.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar
comment: Experimental class for structural purposes not recommended for annotation. A material accumulation process ends a material transport process.

material transport process
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: has output
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0002181
definition: A process during which material is displaced from its original location and transported either to a new location or back to the original location.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar
comment: Experimental class for structural purposes not recommended for annotation.

geographic basin
type: Class
subclass of: depressed landform
subclass of: Restriction
  on property: overlaps
  some values from: planetary crust
definition: A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
editor note: The general semantics of depression and geographic basin are still to be worked out see https://github.com/EnvironmentOntology/envo/issues/486
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar

Axiom
annotated source: geographic basin
annotated property: definition
annotated target: A depression which is part of a planetary crust, is of geographic scale, and is partially or completely enclosed.
has db xref: https://en.wikipedia.org/wiki/Basin

soot
type: Class
subclass of: particulate environmental material
subclass of: Restriction
  on property: composed primarily of
  some values from: organic molecular entity
definition: Particulate environmental material which is composed primarily of carbon particles formed through the incomplete combustion of hydrocarbons.
editor note: Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar

Axiom
annotated source: soot
annotated property: definition
annotated target: Particulate environmental material which is composed primarily of carbon particles formed through the incomplete combustion of hydrocarbons.
has db xref: https://en.wikipedia.org/wiki/Soot

marine sediment
type: Class
equivalent class: Class
  union of: Class
    intersection of: sediment
    intersection of: Restriction
      on property: overlaps
      some values from: marine water body
  union of: Class
    intersection of: sediment
    intersection of: Restriction
      on property: adjacent to
      some values from: marine water body
subclass of: sediment
subclass of: Restriction
  on property: adjacent to
  some values from: marine water body
subclass of: Restriction
  on property: output of
  some values from: sedimentation in a water body
definition: Sediment which has been transported through the marine water column, settling on the seafloor.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
has exact synonym: marine sediments
in subset: envoPolar
comment: Particles of marine sediment are primarily generated by 1) processes in terrestrial systems and transported to the marine realm by the action of rivers or aeolian processes (amongst other routes) , 2) marine organisms, 3) chemical processes in seawater, or 4) cosmogeneous input.

Axiom
annotated source: marine sediment
annotated property: definition
annotated target: Sediment which has been transported through the marine water column, settling on the seafloor.
has db xref: https://en.wikipedia.org/wiki/Pelagic_sediment#_note-8

sedimentation in a water body
type: Class
subclass of: material accumulation process
subclass of: Restriction
  on property: has part
  some values from: precipitation process
subclass of: Restriction
  on property: occurs in
  some values from: water body
subclass of: Restriction
  on property: has participant
  some values from: particulate environmental material
subclass of: Restriction
  on property: ends
  some values from: material transport process
definition: A material accumulation process during which solid particles are pulled through a water body by gravitation or centrifugal force and which ends when they settle on a solid surface.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar

material transformation process
type: Class
subclass of: environmental system process
subclass of: Restriction
  on property: has input
  some values from: environmental material
subclass of: Restriction
  on property: has output
  some values from: environmental material
definition: A process during which a portion of some environmental material is converted into a different material or a collection of materials.
editor note: A different material transformation process class (or similarly named class) pertaining to the conversion of a specific chemical into another belongs in CHEBI and or REX ontologies.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar
comment: Experimental class for structural purposes not recommended for annotation. A material transformation process only refers to ENVO:environmental material classes (e.g. bulk and typically impure substances), rather than transformations converting a specific chemical into another.

desublimation of water vapour into ice
type: Class
subclass of: desublimation process
subclass of: hydrological process
subclass of: Restriction
  on property: has input
  some values from: liquid water
definition: A desublimation process during which water vapour is frozen into water ice.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar

cryoform
type: Class
equivalent class: Class
  intersection of: solid astronomical body part
  intersection of: Restriction
    on property: composed primarily of
    some values from: Class
      union of: permafrost
      union of: water ice
      union of: snow
subclass of: solid astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    union of: permafrost
    union of: water ice
    union of: snow
definition: A solid astronomical body part which is primarily composed of a continuous mass of snow and/or ice.
editor note: Place holder class. Also the axiom should be changed to something along the lines of 'primairly composed of’ some ‘environmental material’ and ‘has quality’ frozen once PATO:frozen is imported.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
in subset: envoPolar

snow mass
type: Class
equivalent class: Class
  intersection of: mass of compounded environmental materials
  intersection of: Restriction
    on property: composed primarily of
    some values from: snow
subclass of: mass of compounded environmental materials
subclass of: Restriction
  on property: formed as result of
  some values from: snow accumulation process
subclass of: Restriction
  on property: composed primarily of
  some values from: snow
definition: A mass of snow.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
has broad synonym: accumulation of snow
has broad synonym: snow accumulation
has db xref: http://sweetontology.net/phenCryo/Accumulation
in subset: envoPolar

acid rainfall
type: Class
subclass of: water-based rainfall
subclass of: water flow process
subclass of: Restriction
  on property: has participant
  some values from: acidic water
definition: A water-based rainfall process during which water droplets with increased acidity fall towards a planetary surface.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
term editor: https://orcid.org/0000-0002-3884-3420
has broad synonym: acid rain
comment: On Earth, the acidity of raindrops is typically increased through interactions of water molecules with sulfur dioxide or nitrogen oxide, released into the atmosphere by natural or anthropogenic processes.

Axiom
annotated source: acid rainfall
annotated property: definition
annotated target: A water-based rainfall process during which water droplets with increased acidity fall towards a planetary surface.
has db xref: https://en.wikipedia.org/wiki/Acid_rain

acidic water-based rain
type: Class
subclass of: water-based rain
subclass of: Restriction
  on property: participates in
  some values from: acid rainfall
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001429
definition: Water-based rain which has increased acidity.
term editor: https://orcid.org/0000-0002-4366-3088
term editor: http://orcid.org/0000-0002-3410-4655
term editor: https://orcid.org/0000-0002-3884-3420
has exact synonym: acid rain
comment: On Earth, the acidity of raindrops is typically increased through interactions of water molecules with sulfur dioxide or nitrogen oxide, released into the atmosphere by natural or anthropogenic processes.

Axiom
annotated source: acidic water-based rain
annotated property: definition
annotated target: Water-based rain which has increased acidity.
has db xref: https://en.wikipedia.org/wiki/Acid_rain

cryosphere
type: Class
subclass of: astronomical body part
subclass of: Restriction
  on property: composed primarily of
  some values from: Class
    intersection of: environmental material
    intersection of: Restriction
      on property: has quality
      some values from: PATO_0001985
definition: An astronomical body part which is composed primarily of environmental materials in their frozen form.
editor note: For the moment the definition links to liquid water but in the future we might need to link to other materials for other planets, e.g., Mars. Need to make this planet agnostic. Might want to not have the definition link to years as some astronomical body parts might not be in systems with years. Note that in a strict sense, rocks are also frozen but in a practical sense we use terms like "solidified". This maybe something to revist if we add more astrogelogical content.
created by: https://orcid.org/0000-0002-0337-8610
created by: https://orcid.org/0000-0002-2282-7215
created by: https://orcid.org/0000-0002-2908-3327
created by: https://orcid.org/0000-0002-3410-4655
created by: https://orcid.org/0000-0002-4366-3088
created by: https://orcid.org/0000-0003-0632-7576
created by: https://orcid.org/0000-0003-4808-4736
creation date: 2021-04-14T18:57:18.275Z
has db xref: Cryosphere
in subset: envoCryo
in subset: envoPolar
comment: The term generally refers to the portions of the Earth where water is in solid form, including snow cover, floating ice, glaciers, ice caps, ice sheets, seasonally frozen ground and perennially frozen ground (permafrost). The Cryosphere may be divided into the cryoatmosphere, the cryohydrosphere (snow cover, glaciers, and river, lake and sea Ice) and the cryolithosphere (perennially and seasonally cryotic ground, rock glacier). Some definitions consider the cryosphere to include any area of Earth which is sufficiently cold for pure water to freeze for at least a part of each year. It should be noted that "Some authorities exclude the earth's atmosphere from the Earth's Cryosphere; others restrict the term Cryosphere to the regions of the earth's crust where Permafrost exists." Definitions of Cryosphere come from several glossaries including: - PhysicalGeography.net http://physicalgeography.net/ - van Everdingen, Robert, ed., 2005 (1998 revised May 2005). Multi-language glossary of permafrost and related ground-ice terms. Boulder, CO: National Snow and Ice Data Center/World Data Center for Glaciology. [https://globalcryospherewatch.org/reference/glossary_docs/Glossary_of_Permafrost_and_Ground-Ice_IPA_2005.pdf] - American Meteorological Society, 2015. Glossary of Meteorology [online], Available at: http://glossary.ametsoc.org/wiki/Main_Page. [Accessed 27/01/2017]. - EU Climate-ADAPT (The European Climate Adaptation Platform), no date, Glossary, Available from: http://climate-adapt.eea.europa.eu/glossary - IPCC, 2014: Annex II: Glossary [Agard, J., Schipper, E. L. F., (ed.)]. In: Climate Change 2014: Impacts, Adaptation, and Vulnerability. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Birkmann, J., Campos, M., Dubeux, C., Nojiri, Y., Olsson, L., Osman-Elasha, B., Pelling, M., Prather, M. J., Rivera-Ferre M. G., Ruppel, O. C., Sallenger, A., Smith, K. R., St. Clair, A. L.,]. Cambridge University Press, …

Axiom
annotated source: cryosphere
annotated property: definition
annotated target: An astronomical body part which is composed primarily of environmental materials in their frozen form.
has db xref: https://orcid.org/0000-0003-4808-4736

Axiom
annotated source: cryosphere
annotated property: comment
annotated target: The term generally refers to the portions of the Earth where water is in solid form, including snow cover, floating ice, glaciers, ice caps, ice sheets, seasonally frozen ground and perennially frozen ground (permafrost). The Cryosphere may be divided into the cryoatmosphere, the cryohydrosphere (snow cover, glaciers, and river, lake and sea Ice) and the cryolithosphere (perennially and seasonally cryotic ground, rock glacier). Some definitions consider the cryosphere to include any area of Earth which is sufficiently cold for pure water to freeze for at least a part of each year. It should be noted that "Some authorities exclude the earth's atmosphere from the Earth's Cryosphere; others restrict the term Cryosphere to the regions of the earth's crust where Permafrost exists." Definitions of Cryosphere come from several glossaries including: - PhysicalGeography.net http://physicalgeography.net/ - van Everdingen, Robert, ed., 2005 (1998 revised May 2005). Multi-language glossary of permafrost and related ground-ice terms. Boulder, CO: National Snow and Ice Data Center/World Data Center for Glaciology. [https://globalcryospherewatch.org/reference/glossary_docs/Glossary_of_Permafrost_and_Ground-Ice_IPA_2005.pdf] - American Meteorological Society, 2015. Glossary of Meteorology [online], Available at: http://glossary.ametsoc.org/wiki/Main_Page. [Accessed 27/01/2017]. - EU Climate-ADAPT (The European Climate Adaptation Platform), no date, Glossary, Available from: http://climate-adapt.eea.europa.eu/glossary - IPCC, 2014: Annex II: Glossary [Agard, J., Schipper, E. L. F., (ed.)]. In: Climate Change 2014: Impacts, Adaptation, and Vulnerability. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change [Birkmann, J., Campos, M., Dubeux, C., Nojiri, Y., Olsson, L., Osman-Elasha, B., Pelling, M., Prather, M. J., Rivera-Ferre M. G., Ruppel, O. C., Sallenger, A., Smith, K. R., St. Clair, A. L.,]. Cambridge University Press, …
has db xref: https://orcid.org/0000-0003-4808-4736

healthcare facility
type: Class
subclass of: human construction
definition: A human construction in which healthcare is provided.
created by: https://orcid.org/0000-0002-9578-0788
creation date: 2021-03-15T04:00:01.750Z
has exact synonym: health facility
has exact synonym: medical facility

Axiom
annotated source: healthcare facility
annotated property: definition
annotated target: A human construction in which healthcare is provided.
has db xref: Health facility

radioactive material
type: Class
subclass of: environmental material
definition: Any material containing unstable atoms that emit ionizing radiation as it decays.
creator: https://orcid.org/0000-0002-7463-6306
date: 2020-08-03T18:32:42Z

Axiom
annotated source: radioactive material
annotated property: definition
annotated target: Any material containing unstable atoms that emit ionizing radiation as it decays.
has db xref: https://www.ehs.iastate.edu/research/radiation/radioactive-materials

snow crystal
type: Class
subclass of: water ice crystal
definition: A water ice crystal which is constituted by water molecules aligned in a hexagonal array.
creator: 0000-0002-2996-719X
has broad synonym: snowflake

Axiom
annotated source: snow crystal
annotated property: definition
annotated target: A water ice crystal which is constituted by water molecules aligned in a hexagonal array.
has db xref: science.html
has db xref: fact-snow-crystal.htm
has db xref: how-do-snowflakes-form-science-behind-snow

Axiom
annotated source: snow crystal
annotated property: hasBroadSynonym
annotated target: snowflake
comment: Snow crystals and snowflakes are often noted as synonyms, however, the term "snowflake" is generally used more loosely. Some sites mention that snow crystals refer to individual crystals of ice, while the term "snowflake" can refer both to an individual crystal of ice and to a bundle of snow crystals. Please see here [https://github.com/EnvironmentOntology/envo/issues/998#issuecomment-685649444]

chemically contaminated sediment
type: Class
equivalent class: Class
  intersection of: sediment
  intersection of: Restriction
    on property: has increased levels of
    some values from: Class
      intersection of: chemical entity
      intersection of: Restriction
        on property: has role
        some values from: environmental contaminant
subclass of: chemically enriched sediment
subclass of: Restriction
  on property: has increased levels of
  some values from: Class
    intersection of: chemical entity
    intersection of: Restriction
      on property: has role
      some values from: environmental contaminant
definition: Sediment which contains some chemical contaminant.
editor note: See https://github.com/EnvironmentOntology/envo/issues/1102 for a possible design pattern. Uses undesirability standard, compared to polluted river's ecological impact standard. What is the relation to ENVO:00002114 'chemically enriched sediment'? Does 'element' in the definition refer to something found in the periosic table (like selenium) or the member of some set, aka an entity?
created by: https://orcid.org/0000-0002-6670-9157
creation date: 2021-04-05T16:38:47.162Z

Axiom
annotated source: chemically contaminated sediment
annotated property: definition
annotated target: Sediment which contains some chemical contaminant.
has db xref: Contamination

pipeline network
type: Class
subclass of: human construction
subclass of: Restriction
  on property: capable of
  some values from: material transport process
definition: A human construction which is used to transport a material which is primarily composed of liquid or gas through a system of pipes.
editor note: Getting an example of use could be helpful. Are some environmental samples collected from the outside of a pipe or its fittings? Or taken from inside the pipe? Removing "transport" from the label may make the labels of sublasses more readable. However, "pipeline" alone could mean several unrelated things, like software pipelines. https://www.eia.gov/energyexplained/natural-gas/natural-gas-pipelines.php uses the term "pipeline network". ALSO could this be a transport feature? Xref https://github.com/EnvironmentOntology/envo/issues/1111.
created by: https://orcid.org/0000-0002-6670-9157
creation date: 2021-04-05T16:38:47.162Z
comment: Pipeline networks typically materials either from 1) a production area to a market area for consumption, 2) a production area to an area for waste disposal.

Axiom
annotated source: pipeline network
annotated property: definition
annotated target: A human construction which is used to transport a material which is primarily composed of liquid or gas through a system of pipes.
has db xref: Pipeline transport

tailings pond
type: Class
subclass of: human construction
subclass of: Restriction
  on property: composed primarily of
  some values from: mine tailing
definition: A human construction which is used as a storage area for mining tailings.
editor note: not placing under 'pond' class becasue contents may not be primarily be composed of water. consider revising 'pond' semantics
created by: https://orcid.org/0000-0002-6670-9157
creation date: 2021-04-05T16:38:47.162Z

Axiom
annotated source: tailings pond
annotated property: definition
annotated target: A human construction which is used as a storage area for mining tailings.
has db xref: Tailings dams and ponds

concentration of carbon dioxide in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: carbon dioxide
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: concentration of organic molecular entity in soil
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: carbon dioxide
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of carbon dioxide when measured in soil.
creator: https://orcid.org/0000-0003-1264-1166
date: 2019-03-14T21:13:30Z
in subset: envoNceas

concentration of carbon dioxide in air
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: carbon dioxide
      intersection of: Restriction
        on property: is part of
        some values from: air
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: carbon dioxide
    intersection of: Restriction
      on property: is part of
      some values from: air
definition: The concentration of carbon dioxide when measured in air.
creator: https://orcid.org/0000-0003-1264-1166
date: 2019-03-14T21:24:04Z
in subset: envoNceas

concentration of carbon dioxide in seawater
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: carbon dioxide
      intersection of: Restriction
        on property: is part of
        some values from: sea water
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: carbon dioxide
    intersection of: Restriction
      on property: is part of
      some values from: sea water
definition: The concentration of carbon dioxide when measured in seawater.
creator: https://orcid.org/0000-0003-1264-1166
date: 2019-03-14T21:35:30Z
in subset: envoNceas

soil organic matter
type: Class
subclass of: organic material
subclass of: astronomical body part
subclass of: Restriction
  on property: is part of
  some values from: soil
definition: Organic material in soil, which consists of plant and animal residues at various stages of decomposition, cells and tissues of soil organisms, and substances synthesized by soil organisms.
creator: https://orcid.org/0000-0003-1264-1166
date: 2019-04-05T00:53:06Z
in subset: envoNceas

Axiom
annotated source: soil organic matter
annotated property: definition
annotated target: Organic material in soil, which consists of plant and animal residues at various stages of decomposition, cells and tissues of soil organisms, and substances synthesized by soil organisms.
has db xref: https://en.wikipedia.org/wiki/Soil_organic_matter

soil surface layer
type: Class
equivalent class: Class
  intersection of: solid surface layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: soil
subclass of: solid astronomical body part
subclass of: solid surface layer
subclass of: surface of an astronomical body
subclass of: soil layer
subclass of: Restriction
  on property: is part of
  some values from: pedosphere
definition: A surface layer which is composed primarily of soil.
creator: https://orcid.org/0000-0003-1264-1166
date: 2019-04-12T17:35:13Z
in subset: envoNceas

compacted soil
type: Class
equivalent class: Class
  intersection of: soil
  intersection of: Restriction
    on property: has quality
    some values from: PATO_0001485
subclass of: soil
subclass of: Restriction
  on property: has quality
  some values from: PATO_0001485
definition: A soil which has a high bulk density and/or a low porosity. A compacted soil has a reduced rate of both water infiltration and drainage
creator: https://orcid.org/0000-0001-6284-4821
creator: https://orcid.org/0000-0002-8461-9745

Axiom
annotated source: compacted soil
annotated property: definition
annotated target: A soil which has a high bulk density and/or a low porosity. A compacted soil has a reduced rate of both water infiltration and drainage
comment: soil-compaction

soil layer
type: Class
equivalent class: Class
  intersection of: layer
  intersection of: Restriction
    on property: composed primarily of
    some values from: soil
subclass of: layer
subclass of: Restriction
  on property: composed primarily of
  some values from: soil
definition: A layer that is composed primarily of soil.
creator: https://orcid.org/0000-0002-8461-9745

soil texture
type: Class
equivalent class: Class
  intersection of: PATO_0000150
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: PATO_0000150
subclass of: Restriction
  on property: characteristic of
  some values from: soil
definition: Texture which inheres in soil.
creator: http://orcid.org/0000-0002-2627-0696
date: 2021-12-26T21:49:12Z

water-holding capacity of soil
type: Class
subclass of: water-holding capacity
subclass of: Restriction
  on property: characteristic of
  some values from: soil
definition: Water-holding capacity which inheres in some soil.
creator: http://orcid.org/0000-0002-8461-9745
creator: https://orcid.org/0000-0001-6284-4821
has exact synonym: soil water-holding capacity

Axiom
annotated source: water-holding capacity of soil
annotated property: definition
annotated target: Water-holding capacity which inheres in some soil.
has db xref: why is soil water holding capacity important

concentration of clay in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: clay
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: clay
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of a clay when measured in soil.
has exact synonym: soil clay concentration

concentration of slit in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: silt
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: silt
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of a slit when measured in soil.
has exact synonym: soil slit concentration

concentration of sand in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: sand
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: sand
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of a sand when measured in soil.
has exact synonym: soil sand concentration

concentration of liquid water in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: liquid water
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: liquid water
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of a liquid water when measured in soil.
has exact synonym: soil liquid water concentration
has exact synonym: soil moisture content
has exact synonym: soil water content

concentration of salt in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: salt
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: salt
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of a salt when measured in soil.
has exact synonym: soil salt concentration

concentration of soil organic matter in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: soil organic matter
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: soil organic matter
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of a soil organic matter when measured in soil.
has exact synonym: soil soil organic matter concentration

temperature of environmental material
type: Class
equivalent class: Class
  intersection of: PATO_0000146
  intersection of: Restriction
    on property: characteristic of
    some values from: environmental material
subclass of: PATO_0000146
subclass of: Restriction
  on property: characteristic of
  some values from: environmental material
definition: The temperature of some environmental material.
has exact synonym: environmental material temperature

temperature of air
type: Class
equivalent class: Class
  intersection of: PATO_0000146
  intersection of: Restriction
    on property: characteristic of
    some values from: air
subclass of: temperature of environmental material
subclass of: Restriction
  on property: characteristic of
  some values from: air
definition: The temperature of some air.
has exact synonym: air temperature

environmental system process quality
type: Class
equivalent class: Class
  intersection of: PATO_0001236
  intersection of: Restriction
    on property: characteristic of
    some values from: environmental system process
subclass of: PATO_0001236
subclass of: Restriction
  on property: characteristic of
  some values from: environmental system process
definition: The quality of a environmental system process.
has exact synonym: quality of environmental system process

porosity of soil
type: Class
equivalent class: Class
  intersection of: PATO_0000973
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: structure of soil
subclass of: PATO_0000973
definition: The porosity of some soil.
has exact synonym: soil porosity

composition of soil
type: Class
equivalent class: Class
  intersection of: PATO_0000025
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: structure of soil
subclass of: PATO_0000025
definition: The composition of some soil.
has exact synonym: soil composition

structure of soil
type: Class
equivalent class: Class
  intersection of: PATO_0000141
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: PATO_0000141
subclass of: Restriction
  on property: characteristic of
  some values from: soil
definition: The structure of some soil.
has exact synonym: soil structure

acidity of soil
type: Class
equivalent class: Class
  intersection of: PATO_0001842
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: PATO_0001842
subclass of: Restriction
  on property: characteristic of
  some values from: soil
definition: The acidity of some soil.
has exact synonym: soil acidity
has_related_synonym: soil pH

temperature of soil
type: Class
equivalent class: Class
  intersection of: PATO_0000146
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: temperature of environmental material
subclass of: Restriction
  on property: characteristic of
  some values from: soil
definition: The temperature of some soil.
has exact synonym: soil temperature

wetness of soil
type: Class
equivalent class: Class
  intersection of: PATO_0001822
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: PATO_0001822
subclass of: Restriction
  on property: characteristic of
  some values from: soil
definition: The wetness of some soil.
has exact synonym: soil wetness

temperature of water
type: Class
equivalent class: Class
  intersection of: PATO_0000146
  intersection of: Restriction
    on property: characteristic of
    some values from: liquid water
subclass of: temperature of environmental material
subclass of: Restriction
  on property: characteristic of
  some values from: liquid water
definition: The temperature of some water.
has exact synonym: water temperature

humidity of soil
type: Class
equivalent class: Class
  intersection of: PATO_0015009
  intersection of: Restriction
    on property: characteristic of
    some values from: soil
subclass of: PATO_0015009
subclass of: Restriction
  on property: characteristic of
  some values from: soil
definition: The humidity of some soil.
has exact synonym: soil humidity

composition of water
type: Class
equivalent class: Class
  intersection of: PATO_0000025
  intersection of: Restriction
    on property: characteristic of
    some values from: liquid water
subclass of: PATO_0000025
subclass of: Restriction
  on property: characteristic of
  some values from: liquid water
definition: The composition of some water.
has exact synonym: water composition

porosity of snow
type: Class
equivalent class: Class
  intersection of: PATO_0000973
  intersection of: Restriction
    on property: characteristic of
    some values from: snow
subclass of: PATO_0000973
subclass of: Restriction
  on property: characteristic of
  some values from: snow
definition: The porosity of some snow.
has exact synonym: snow porosity

porosity of water ice
type: Class
equivalent class: Class
  intersection of: PATO_0000973
  intersection of: Restriction
    on property: characteristic of
    some values from: water ice
subclass of: PATO_0000973
subclass of: Restriction
  on property: characteristic of
  some values from: water ice
definition: The porosity of some water ice.
has exact synonym: water ice porosity

anthropogenic generation of energy
type: Class
equivalent class: Class
  intersection of: anthropogenic environmental process
  intersection of: Restriction
    on property: generates
    some values from: energy
subclass of: anthropogenic environmental process
subclass of: Restriction
  on property: generates
  some values from: energy
definition: The generation of energy for use by humans
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:02:04Z

generation of energy from coal
type: Class
equivalent class: Class
  intersection of: anthropogenic generation of energy
  intersection of: Restriction
    on property: has input
    some values from: coal
subclass of: anthropogenic generation of energy
subclass of: Restriction
  on property: has input
  some values from: coal
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:04:34Z

energy
type: Class
subclass of: disposition
definition: A disposition which is realized during the execution of work, the emission of heat, or the possession of mass.
creator: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:22:18Z
comment: Consider replacing with PATO class; note that PATO class is not a disposition. This should likely go into OBO Core and also have a physicist look at it.

potential energy
type: Class
subclass of: energy
definition: Energy possessed by an object because of its position relative to other objects, stresses within itself, its electric charge, or other factors.
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:24:50Z

kinetic energy
type: Class
subclass of: energy
definition: Energy which is realised through motion.
creator: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:25:57Z

mixed potential and kinetic energy
type: Class
equivalent class: Class
  intersection of: energy
  intersection of: Restriction
    on property: has part
    some values from: potential energy
  intersection of: Restriction
    on property: has part
    some values from: kinetic energy
subclass of: energy
subclass of: Restriction
  on property: has part
  some values from: potential energy
subclass of: Restriction
  on property: has part
  some values from: kinetic energy
definition: Energy which is the sum of 1) kinetic energy and 2) potential energy.
Contributor: https://orcid.org/0000-0002-4366-3088
creator: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:26:08Z

nuclear energy
type: Class
subclass of: potential energy
definition: potential energy that binds nucleons to form the atomic nucleus (and nuclear reactions).
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:28:07Z

radiant energy
type: Class
subclass of: potential energy
subclass of: Restriction
  on property: realized in
  some values from: electromagnetic radiation
definition: Potential energy which is stored in the fields of propagated by electromagnetic radiation.
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:29:21Z

thermal energy
type: Class
subclass of: kinetic energy
definition: Kinetic energy which is realised through the microscopic motion of particles.
Contributor: https://orcid.org/0000-0002-4366-3088
creator: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:30:20Z
comment: A form of disordered mechanical energy.

geothermal energy
type: Class
subclass of: thermal energy
definition: Thermal energy which propagates through a solid (typically rocky) astronomical body.
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:47:30Z
comment: Often, this term is used specifically for thermal energy spreading from heat sources (e.g. magma chambers, the planetary core) within the Earth. However, it is also used for extraterrestrial bodies.

stellar radiation energy
type: Class
subclass of: radiant energy
Contributor: https://orcid.org/0000-0002-4366-3088
creator: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T20:48:18Z

fossil fuel power plant
type: Class
equivalent class: Class
  intersection of: power plant
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: has input
        some values from: Class
subclass of: power plant
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: has input
      some values from: Class
        intersection of: environmental material
        intersection of: Restriction
definition: A power station which burns a fossil fuel such as coal, natural gas, or petroleum to produce electricity.
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T21:00:37Z

coal power plant
type: Class
equivalent class: Class
  intersection of: power plant
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: has input
        some values from: coal
subclass of: fossil fuel power plant
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: has input
      some values from: coal
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T21:01:16Z

solar power station
type: Class
equivalent class: Class
  intersection of: power plant
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: realizes
        some values from: stellar radiation energy
subclass of: power plant
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: realizes
      some values from: stellar radiation energy
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T21:14:06Z

ocean thermal power station
type: Class
equivalent class: Class
  intersection of: power plant
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: realizes
        some values from: thermal energy
      intersection of: Restriction
        on property: has input
        some values from: sea water
subclass of: power plant
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: realizes
      some values from: thermal energy
    intersection of: Restriction
      on property: has input
      some values from: sea water
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T21:15:52Z
has exact synonym: OTEC power plant
has exact synonym: OTEC power station

tidal power plant
type: Class
equivalent class: Class
  intersection of: power plant
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: anthropogenic generation of energy
      intersection of: Restriction
        on property: has part
        some values from: tidal flow process
      intersection of: Restriction
        on property: realizes
        some values from: kinetic energy
subclass of: power plant
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: anthropogenic generation of energy
    intersection of: Restriction
      on property: has part
      some values from: tidal flow process
    intersection of: Restriction
      on property: realizes
      some values from: kinetic energy
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-11-03T21:21:48Z

anatomical entity environment
type: Class
equivalent class: Class
  intersection of: environmental system
  intersection of: Restriction
    on property: determined by part of
    some values from: UBERON_0001062
subclass of: environmental system
subclass of: Restriction
  on property: is part of
  some values from: environmental system determined by an organism
subclass of: Restriction
  on property: determined by part of
  some values from: UBERON_0001062
definition: An environment which is determined by an anatomical entity.

integumental system environment
type: Class
equivalent class: Class
  intersection of: anatomical entity environment
  intersection of: Restriction
    on property: determined by part of
    some values from: UBERON_0002416
subclass of: anatomical entity environment
subclass of: Restriction
  on property: determined by part of
  some values from: UBERON_0002416

concentration of dioxygen in liquid water
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: dioxygen
      intersection of: Restriction
        on property: is part of
        some values from: liquid water
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: dioxygen
    intersection of: Restriction
      on property: is part of
      some values from: liquid water
definition: The concentration of dioxygen when measured in liquid water.
has exact synonym: liquid water dioxygen concentration

acidity of water
type: Class
equivalent class: Class
  intersection of: PATO_0001842
  intersection of: Restriction
    on property: characteristic of
    some values from: liquid water
subclass of: PATO_0001842
subclass of: Restriction
  on property: characteristic of
  some values from: liquid water
definition: The acidity of some water.
has exact synonym: water acidity

concentration of dioxygen in sea water
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: dioxygen
      intersection of: Restriction
        on property: is part of
        some values from: sea water
subclass of: concentration of dioxygen in liquid water
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: dioxygen
    intersection of: Restriction
      on property: is part of
      some values from: sea water
definition: The concentration of dioxygen when measured in sea water.
has exact synonym: sea water dioxygen concentration

concentration of oxygen in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: dioxygen
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: dioxygen
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of oxygen when measured in soil.
has exact synonym: soil oxygen concentration

concentration of iron molecular entity in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: iron molecular entity
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: iron molecular entity
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of iron molecular entity when measured in soil.
has exact synonym: soil iron molecular entity concentration

concentration of sodium molecular entity in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: sodium molecular entity
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: sodium molecular entity
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of sodium molecular entity when measured in soil.
has exact synonym: soil sodium molecular entity concentration

concentration of organic molecular entity in soil
type: Class
equivalent class: Class
  intersection of: PATO_0000033
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: organic molecular entity
      intersection of: Restriction
        on property: is part of
        some values from: soil
subclass of: PATO_0000033
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: organic molecular entity
    intersection of: Restriction
      on property: is part of
      some values from: soil
definition: The concentration of organic molecular entity when measured in soil.
has exact synonym: soil organic molecular entity concentration

exposure stressor
type: Class
subclass of: material entity
subclass of: Restriction
  on property: interacts with
  some values from: exposure_receptor
subclass of: Restriction
  on property: interacts_with_an_exposure_receptor_via
  some values from: exposure event
definition: An agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure_receptor during an exposure event.
creation date: 2010-09-21T02:43:50Z
has OBO namespace: exposure_stressor
id: ExO:0000000

Axiom
annotated source: exposure stressor
annotated property: definition
annotated target: An agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure_receptor during an exposure event.
has db xref: CTD:curators

exposure_receptor
type: Class
subclass of: material entity
subclass of: Restriction
  on property: interacts with
  some values from: exposure stressor
definition: An entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during an exposure event.
created by: cmattin
creation date: 2010-09-21T02:45:36Z
has exact synonym: exposure recipient
has exact synonym: exposure target
has OBO namespace: exposure_receptor
id: ExO:0000001

Axiom
annotated source: exposure_receptor
annotated property: definition
annotated target: An entity (e.g., a human, human population, or a human organ) that interacts with an exposure stressor during an exposure event.
has db xref: CTD:curators

exposure event
type: Class
subclass of: process
subclass of: Restriction
  on property: has part
  some values from: exposure stressor
subclass of: Restriction
  on property: has part
  some values from: exposure_receptor
subclass of: Restriction
  on property: interacts_with_an_exposure_receptor_via
  some values from: exposure stressor
subclass of: Restriction
  on property: interacts_with_an_exposure stressor_via
  some values from: exposure_receptor
definition: An interaction between an exposure stressor and an exposure_receptor.
created by: cmattin
creation date: 2010-09-21T02:47:00Z
has OBO namespace: exposure_event
id: ExO:0000002

Axiom
annotated source: exposure event
annotated property: definition
annotated target: An interaction between an exposure stressor and an exposure_receptor.
has db xref: CTD:curators

ecosphere
type: Class
subclass of: exposure_receptor
definition: The earth, all of the organisms living on it, and all of the environmental factors, which act on the organisms. The volume of area where biological matter can exist, slightly above, on or below ground level.
created by: cmattin
creation date: 2011-01-10T09:26:27Z
has OBO namespace: exposure_receptor
id: ExO:0000030

Axiom
annotated source: ecosphere
annotated property: definition
annotated target: The earth, all of the organisms living on it, and all of the environmental factors, which act on the organisms. The volume of area where biological matter can exist, slightly above, on or below ground level.
has db xref: XCTD:curators

biosphere
type: Class
subclass of: Restriction
  on property: is part of
  some values from: ecosphere
definition: MERGED DEFINITION:\nTARGET DEFINITION: An exposure_receptor that is the global ecological system integrating all living beings and their relationships, including their interaction with the elements of the lithosphere, hydrosphere and atmosphere.\n--------------------\nSOURCE DEFINITION: An exposure_receptor that is the part of the environment that is made or modified by humans for use in human activities and human habitats.
created by: cmattin
creation date: 2011-01-10T09:27:26Z
has alternative id: ExO:0000032
has exact synonym: anthrosphere
has OBO namespace: exposure_receptor
id: ExO:0000031

Axiom
annotated source: biosphere
annotated property: definition
annotated target: MERGED DEFINITION:\nTARGET DEFINITION: An exposure_receptor that is the global ecological system integrating all living beings and their relationships, including their interaction with the elements of the lithosphere, hydrosphere and atmosphere.\n--------------------\nSOURCE DEFINITION: An exposure_receptor that is the part of the environment that is made or modified by humans for use in human activities and human habitats.
has db xref: GOC:hjd

human population
type: Class
subclass of: exposure_receptor
subclass of: Restriction
  on property: is part of
  some values from: biosphere
definition: An exposure_receptor that is a group of Homo sapiens inhabiting a given area.
created by: cmattin
creation date: 2011-01-10T09:28:02Z
has OBO namespace: exposure_receptor
id: ExO:0000033

Axiom
annotated source: human population
annotated property: definition
annotated target: An exposure_receptor that is a group of Homo sapiens inhabiting a given area.
has db xref: CTD:curators

health status
type: Class
subclass of: human attribute
definition: The condition of an organism in all aspects (e.g., functional or metabolic efficiency).
created by: cmattin
creation date: 2011-01-10T09:29:51Z
has OBO namespace: human_attribute
id: ExO:0000038

Axiom
annotated source: health status
annotated property: definition
annotated target: The condition of an organism in all aspects (e.g., functional or metabolic efficiency).
has db xref: CTD:curators

human individual
type: Class
subclass of: exposure_receptor
subclass of: Restriction
  on property: is part of
  some values from: human population
definition: Being or characteristic of a single thing or person.
created by: cmattin
creation date: 2011-01-10T09:30:56Z
has OBO namespace: exposure_receptor
id: ExO:0000042

Axiom
annotated source: human individual
annotated property: definition
annotated target: Being or characteristic of a single thing or person.
has db xref: CTD:curators

human attribute
type: Class
subclass of: human population
subclass of: human individual
subclass of: Restriction
  on property: is part of
  some values from: human individual
definition: An attribute describing some aspect of an individual or human population.
created by: cmattin
creation date: 2011-01-10T09:30:27Z
has OBO namespace: human_attribute
id: ExO:0000089

Axiom
annotated source: human attribute
annotated property: definition
annotated target: An attribute describing some aspect of an individual or human population.
has db xref: CTD:curators

age
type: Class
subclass of: influencing factor
definition: How long something or someone has existed; elapsed time since birth.
created by: cgrondin
creation date: 2017-04-06T03:47:29Z
has db xref: https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf
has OBO namespace: human_attribute
has_related_synonym: aged
has_related_synonym: chronological age
has_related_synonym: postnatal age
id: ExO:0000102

influencing factor
type: Class
subclass of: health status
definition: Other conditions with the power to have an effect on health status.
created by: cgrondin
creation date: 2017-04-06T03:47:29Z
has db xref: https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf
has OBO namespace: health_status
has_related_synonym: Influence
id: ExO:0000103

sex
type: Class
subclass of: influencing factor
definition: The assemblage of physical properties or qualities by which male is distinguished from female; the physical difference between male and female; the distinguishing peculiarity of male or female.
created by: cgrondin
creation date: 2017-04-06T03:47:29Z
has db xref: https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf
has OBO namespace: human_attribute
has_related_synonym: gender
id: ExO:0000110

genomic feature
type: Class
equivalent class: Class
  intersection of: SO_0000110
  intersection of: Restriction
    on property: has_location
    some values from: genomic feature location
subclass of: genomic entity
subclass of: SO_0000110
subclass of: Restriction
  on property: is part of
  some values from: SO_0001026
subclass of: Restriction
  on property: has_sequence
  some values from: genomic sequence
subclass of: Restriction
  on property: has_location
  some values from: genomic feature location
definition: A sequence feature (continuous extent of biological sequence) that is of genomic origin (i.e. carries sequence from the genome of a cell or organism)
editor note: This class was created largely as a modeling convenience to support organizing data for schema definitions. We may consider obsoleting it if it ends up causing confusion or complicating classification of terms in the ontology.
comment: 1. A feature being 'of genomic origin' here means only that its sequence has been located to the genome of some organism by alignment with some reference genome. This is because the sequence was originally identified in, or artificially created to replicate, sequence from an organism's genome. 2. The location of a genomic feature is defined by start and end coordinates based on alignment with a reference genome. Genomic features can span any size from a complete chromosome, to a chromosomal band or region, to a gene, to a single base pair or even junction between base pairs (this would be a sequence feature with an extent of zero). 3. As sequence features, instances of genomic features are identified by both their inherent *sequence* and their *position* in a genome - as determined by an alignment with some reference sequence. Accordingly, the 'ATG' start codon in the coding DNA sequence of the human AKT gene and the 'ATG' start codon in the human SHH gene represent two distinct genomic features despite having he same sequence, in virtue of their different positions in the genome.

sequence feature set
type: Class
subclass of: sequence feature or set
subclass of: Restriction
  on property: has member
  some values from: SO_0000110
subclass of: Restriction
  on property: has_member_count
  some values from: int
example of usage: 1. The set of all alleles at a particular location in a genome (a 'single locus complement') - e.g. {APOE-epsilon2 / APOE-epsilon4} at the APOE locus 2. The set of all alleles that comprise a haplotype - e.g. the SNPs {rs7412-T, rs429358-T} in the APOEɛ2 allele. 3. The set of all chromosomes in a genome - e.g. {human Chr1, 2, 3, . . . 22, X, Y}
definition: A set of sequence features.
comment: 'Sets' are used to represent entities that are typically collections of more than one member. But we allow for sets that contain 0 members (an 'empty' set) or 1 member (a 'singleton' or 'unit' set), consistent with the concept of 'mathematical sets'. Sets may also include duplicates (i.e. contain more than one member representing the same feature). The notion of a 'complement' is a special case of a set, where the members necessarily comprise an exhaustive collection of all objects that make up some well-defined set. It is useful for defining many biologically-relevant sets of sequence features. For example, a 'haplotype' is the set of all genetically-linked alleles on a single chromosomal strand at a defined location - e.g. the SNP alleles {rs7412-C, rs429358-C} comprise the haplotype defining the APOEɛ4 gene allele [1]. And a 'single locus complement' is the set of all alleles at a specified location in a particular genome - e.g. the APOEɛ4 and APOEɛ4 gene alleles ([1], [2]) that make up the 'Gs270' APOE genotype [3]. [1] https://www.snpedia.com/index.php/APOE-%CE%B54 [2] https://www.snpedia.com/index.php/APOE-%CE%B52 [3] https://www.snpedia.com/index.php/Gs270

genomic feature set
type: Class
subclass of: sequence feature set
subclass of: genomic entity
subclass of: Restriction
  on property: has member
  some values from: genomic feature
definition: A set of genomic features (i.e. sequence features that are of genomic origin).
editor note: In some cases there may be zero or only one member of such a complement, which is why this class is not defened to necessarily have some 'genomic feature' as a member.
alternative term: genomic locus complement
comment: A genomic feature is any located sequence feature in the genome, from a single nucleotide to a gene into an entire chromosome. 'Sets' are used to represent entities that are typically collections of more than one member - e.g. the set of chromosomes that make up the human genome. But we allow for sets that contain 0 members (an 'empty' set) or 1 member (a 'singleton' or 'unit' set), consistent with the concept of 'mathematical sets'. For example, a 'single locus complement' at an X-linked locus in a XY male will consist of only one allele, as there is only one X-chromosome in the genome. Note also that sets may contain duplicates (i.e. more than one member representing the same feature). For example, a homozygous 'single locus complement' is a set comprised of two of the same feature. The notion of a 'genomic feature set' differs from that of a 'genomic sequence set' in that we are counting how many copies of the same *sequence feature* exist in a genome, as opposed to how many of the same *sequence*. 'Genomic feature sets are useful for representing things like 'single locus complements', where members are sequence features whose identity is dependent on their location. By contrast, 'genomic sequence sets' are useful for describing things like 'copy number complements', which are concerned only with how many copies of a sequence exist in a genome, regardless of the location where these reside.

sequence feature or set
type: Class
equivalent class: Class
  union of: sequence feature or set
  union of: SO_0000110
subclass of: generically dependent continuant
definition: A sequence feature or a set of such features.
alternative term: sequence feature or collection
comment: GENO defines three levels of sequence-related artifacts, which are distinguished by their identity criteria. 1. 'Biological sequence' identity is dependent only on the ordering of units that comprise the sequence. 2. 'Sequence feature' identity is dependent on its sequence and the genomic position if the sequence (aligns with definition of 'sequence feature' in the Sequence Ontology). 3. 'Qualified sequence feature' identity is additionally dependent on some aspect of the physical context of the genetic material bearing the feature, extrinsic to its sequence and its genomic position. For example, its being targeted by gene knockdown reagents, its being transgenically expressed in a foreign cell from a recombinant expression construct, its having been epigenetically modified in a way that alters its expression level or pattern, or its being located in a specific cellular or anatomical location.

biological sequence
type: Class
subclass of: biological sequence or set
subclass of: Restriction
disjoint with: sequence feature location
disjoint with: SO_0000110
definition: A linear ordering of units representing monomers of a biological macromolecule (e.g. nucleotides in DNA and RNA, amino acids in polypeptides).
editor note: GENO defines three levels of sequence-related artifacts, which are distinguished by their identity criteria. 1. 'Biological sequence' identity is dependent only on the ordering of units that comprise the sequence. 2. 'Sequence feature' identity is dependent on its sequence and the genomic location of the sequence (this is consistent with the definition of 'sequence feature' in the Sequence Ontology). 3. 'Qualified sequence feature' identity is additionally dependent on some aspect of the physical context of the genetic material in which the feature is concretized. This third criteria is extrinsic to its sequence and its genomic location. For example, the feature's physical concretization being targeted by a gene knockdown reagent in a cell (e.g. the zebrafish Shha gene as targeted by the morpholino 'Shha-MO1'), or its being transiently expressed from a recombinant expression construct (e.g. the human SHH gene as expressed in a mouse Shh knock-out cell line), or its having been epigenetically modified in a way that alters its expression level or pattern (e.g. the human SHH gene with a specific methylation pattern).
alternative term: biomacromolecular sequence
alternative term: state
has db xref: VMC:State
comment: 'Sequences' differ from 'sequence features' in that instances are distinguished only by their inherent ordering of units, and not by any positional aspect related to alignment with some reference sequence. Accordingly, the 'ATG' translational start codon of the human AKT gene is the same *sequence* as the 'ATG' start codon of the human SHH gene, but these represent two distinct *sequence features* in virtue of their different positions in the genome.

Axiom
annotated source: biological sequence
annotated property: subClassOf
annotated target: Restriction
is_identity_criteria: true

Axiom
annotated source: biological sequence
annotated property: alternative term
annotated target: state
editor note: In the VMC model, the notion of a GENO:biological sequence is called the 'state' of an allele.

qualified sequence feature or collection
type: Class
subclass of: generically dependent continuant
definition: A sequence feature (or collection of features) whose identity is dependent on the context or state of its material bearer (in addition to its sequence an position). This context/state describes factors external to its inherent sequence and position that can influences its expression, such as being targeted by gene-knockdown reagents, or an epigenetic modification.

qualified genomic feature
type: Class
subclass of: genomic entity
subclass of: qualified sequence feature
subclass of: Restriction
example of usage: Consider wild-type zebrafish shha gene in the context of being targeted by morpholino MO-1 vs morpholino MO-2 in separate experiments. These shha genes share identical sequence and position, but represent distinct instances of a 'qualified sequence feature' because of their different external contexts. This is important because these qualified features could have distinct phenotypes associated with them (just as two different sequence variants (alleles) of the same gene can have potentially different associated phenotypes).
definition: A qualified sequence feature that carries sequence derived from the genome of a cell or organism.

Axiom
annotated source: qualified genomic feature
annotated property: subClassOf
annotated target: Restriction
is_identity_criteria: true
comment: This axiom is an initial attempt to formalize the identity criteria of an extrinnsic context that separates qualified sequence features from sequence features (i.e. the context of its material bearer). As we further develop our efforts here this will get refined and more precise.

Axiom
annotated source: qualified genomic feature
annotated property: subClassOf
annotated target: Restriction
is_identity_criteria: true
comment: Formalizes one identity criteria of the sequence feature component of a qualified sequence feature (which itself is identified by its sequence and its genomic position).

qualified genomic feature set
type: Class
subclass of: genomic entity
subclass of: qualified sequence feature set
subclass of: Restriction
  on property: has_sequence_feature
  some values from: genomic feature set
subclass of: Restriction
  on property: has member
  some values from: qualified genomic feature
definition: A set of qualified sequence features that carry genomic sequence.
editor note: Because there are cases there may be zero or only one member of such a set, this class is not asserted to necessarily have some 'qualified genomic feature' as a member.
comment: A 'complement' refers to an exhaustive collection of all objects that make up some well-defined set. This notion is useful for defining biologically-relevant sets of sequence features. For example, a haplotype is defined as the set of all genetically-linked alleles on a single chromosomal strand at a defined location - e.g. the SNP alleles {rs7412-C, rs429358-C} comprise the haplotype defining the APOEɛ4 gene allele. A complements may contain 0, 1, or more than one members. For example, the complement of alleles at a defined locus across homologous chromosomes in an individual's genome will consist of two members for autosomal locations, and one member for non-homologous locations on the X and Y chromosome.

sequence feature location
type: Class
subclass of: generically dependent continuant
disjoint with: SO_0000110
definition: The location of a sequence feature as defined by its start and end position on some reference coordinate system.
comment: 1. A sequence feature location is defined by its begin and end coordinates on a reference sequence, but it is not identified by a particular sequence that may reside there. The same location, as defined on a particular reference, may be occupied by different sequences in the genome of organism 1 vs that of organism 2 (e.g. if a SNV exists within this location in only one of the organisms). 2. The notion of a sequence feature location in the realm of biological sequences is analogous to a BFO:spatiotemporal region in the realm of physical entities. A spatiotemporal region can be 'occupied by' physical objects, while a genomic location is 'occupied by' sequence features. Just as a spatiotemporal region is distinct from an object that occupies it, so too a genomic location is distinct from a sequence feature that occupies it. As a more concrete example, consider the distinction between a street address and the building that occupies it as analogous to the relationship between a genomic locus and the sequence feature that resides there.

genomic entity
type: Class
equivalent class: Class
  union of: genomic feature
  union of: Restriction
    on property: has part
    some values from: genomic feature
  union of: Restriction
    on property: has_sequence_feature
    some values from: Class
      union of: genomic feature
      union of: genomic feature set
  union of: Restriction
    on property: denotes
    some values from: Class
      union of: genomic feature
      union of: genomic feature set
      union of: qualified genomic feature set
subclass of: generically dependent continuant
subclass of: Restriction
  on property: in taxon
  some values from: OBI_0100026
GENO_0000905: true
definition: An generically dependent continuant that carries biological sequence that is part of or derived from a genome.
editor note: An abstract/organizational class to support data modeling, that includes genomic features, genomic feature complements, qualified genomic features and their complements, as well as genotypes that denote such entities.

genomic feature location
type: Class
subclass of: sequence feature location
definition: The location of a sequence feature in a genome, defined by its start and end position on some reference genomic coordinate system
editor note: In GENO, the notion of a Genomic Location (aka Genomic Locus) plays the same role as that of a FALDO:Region in the design pattern for describing the location of a feature of interest. We define this specific GENO class because the ontological nature of FALDO:Region class is not clear in the context of the BFO and SO-based GENO model. We will work to resolve these questions and ideally converge these concepts in the future. We don't link a Genomic Location to a specific reference sequence because in the FALDO model (which GENO adopts with the exception of swapping GENO:Genomic Locus for FALDO:Region), allows the start and end positions of a region to be defined on separate reference sequences. So while a given Location is conceptually associated with a single reference, in practice it can be pragmatic to define start and stop on different references sequences.
editor note: In practice, GENO advocates describing biology at the level of genomic features - i.e. define specific terms for genes as genomic features, and not duplicate representation of the loci where each gene resides. So we might define a class representing the human Shh gene as a 'genomic feature', but not parallel this with a 'human Shh gene locus' class. The utility of the 'genomic locus' class in the ontology is primarily to be clear about the distinction, but we would only use it in modeling data if absolutely needed. For example, we would define an 'HLA gene block' as a subclass of 'genomic feature', and assert that HLA-A, HLA-B, and HLA-C genes are part/subsequences of this HLA gene block (as opposed to modeling this as an 'HLA locus' and asserting that the HLA-A, HLA-B, and HLA-C genes occupy this locus).
alternative term: genomic location
alternative term: genomic locus
has db xref: VMC:Location
comment: 1. A genomic location (aka locus) is defined by its begin and end coordinates on a reference genome, independent of a particular sequence that may reside there. In GENO, we say that a genomic location is occupied_by a 'sequence feature' - where the identity of this feature depends on both it sequence, and its location in the genome (i.e. the locus it occupies). For example, the 'ATG' sequence beginning the ORF of the human SHH gene shares the *same sequence* as the 'ATG' beginning the ORF of the human AKT gene. But these are *distinct sequence features* because they occupy different genomic locations. 2. A given genomic location (e.g. the human SHH gene locus) may be occupied by different alleles (e.g. different alleles of the SHH gene). Within the genome of a single diploid organism, there is potential for two alleles to exist at such a locus (i.e. two different versions of the SHH gene). And across genomes of all members of a species, many more alleles of the SHH gene may exist and occupy this same locus. 3. The notion of a genomic location in the realm of biological sequences is analogous to a BFO:spatiotemporal region in the realm of physical entities. A spatiotemporal region can be occupied_by physical objects, while a genomic location is occupied_by sequence features. Just as a spatiotemporal region is distinct from an object that occupies it, so too a genomic locus is distinct from a sequence feature that occupies it. As a more concrete example, consider the distinction between a street address and the building that occupies it as analogous to the relationship between a genomic location and the feature that resides there.

organismal entity
type: Class
equivalent class: Class
  union of: OBI_0100026
  union of: Restriction
    on property: derives from
    some values from: OBI_0100026
  union of: Restriction
    on property: has member
    some values from: OBI_0100026
subclass of: material entity
GENO_0000905: true
IAO_0000114: GENO_0000484
definition: A material entity that is an organism, derived from an organism, or composed of organisms (e.g. a cell line, biosample, tissue culture, population, etc).
editor note: useful organizational term to collect entities that have genomes/genotypes.

qualified sequence feature
type: Class
subclass of: qualified sequence feature or collection
example of usage: Consider wild-type zebrafish shha gene in the context of being targeted by morpholino MO-1 vs morpholino MO-2 in separate experiments. These shha genes share identical sequence and position, but represent distinct instances of a 'qualified sequence feature' because of their different external contexts. This is important because these qualified features could have distinct phenotypes associated with them (just as two different sequence variants (alleles) of the same gene can have potentially different associated phenotypes).
definition: A sequence feature whose identity is additionally dependent on the context or state of the material sequence molecule in which the feature is concretized. This context/state describes factors external to the feature's intrinsic sequence and position that can influences its expression, such as being targeted by gene-knockdown reagents, or an epigenetic modification.
comment: GENO defines three levels of sequence-related artifacts, which are distinguished by their identity criteria. 1. 'Biological sequence' identity is dependent only on the ordering of units that comprise the sequence. 2. 'Sequence feature' identity is dependent on its sequence and the genomic location of the sequence (this is consistent with the definition of 'sequence feature' in the Sequence Ontology). 3. 'Qualified sequence feature' identity is additionally dependent on some aspect of the physical state or context of the genetic material in which the feature is concretized. This third criteria is extrinsic to its sequence and its genomic location. For example, the feature's physical concretization being targeted by a gene knockdown reagent in a cell (e.g. the zebrafish Shha gene as targeted by the morpholino 'Shha-MO1'), or its being transiently expressed from a recombinant expression construct (e.g. the human SHH gene as expressed in a mouse Shh knock-out cell line), or its having been epigenetically modified in a way that alters its expression level or pattern (e.g. the human SHH gene with a specific methylation pattern).
comment: Modeling sequence entities at this 'qualified' level is useful for distinguishing cases where features with identical sequence and position as separate instances - based on their material bearers being found in different contexts. For example, consider a situation where the zebrafish shha gene (a sequence feature) is targeted in two experimental groups of fish by two different morpholinos, and phenotypes are assessed for each. We want to be able to represent two 'variants' of the shha gene in this scenario as separate 'qualified sequence feature' instances so we can capture data about the phenotypes resulting from each - just as we would separately represent to different sequence variants (alleles) of the shha gene at the sequence feature level so that we can track their associated phenotypes.

qualified sequence feature set
type: Class
subclass of: qualified sequence feature or collection
subclass of: Restriction
  on property: has part
  some values from: qualified sequence feature
subclass of: Restriction
  on property: has_sequence_feature
  some values from: sequence feature set
definition: A set of qualified seqeunce features.
comment: 'Sets' are used to represent entities that are typically collections of more than one member. But we allow for sets that contain 0 members (an 'empty' set) or 1 member (a 'singleton' or 'unit' set), consistent with the concept of 'matehmatical sets'.

biological sequence or set
type: Class
subclass of: generically dependent continuant
definition: A biolocical sequence, or set of such sequences.
alternative term: biological sequence or collection

genomic sequence
type: Class
equivalent class: Restriction
  on property: is_sequence_of
  some values from: genomic feature
subclass of: biological sequence
subclass of: Restriction
  on property: is_sequence_of
  some values from: genomic feature
definition: A biological sequence that is of genomic origin (i.e. carries sequence from the genome of a cell or organism).
comment: A sequence being 'of genomic origin' here means only that it has been located to the genome of some organism by alignment with some reference genomic sequence. This is because the sequence was originally identified in, or artificially created to replicate, sequence from an organism's genome.

molecular_function
type: Class
subclass of: process
disjoint with: biological_process
definition: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
IAO_0000589: molecular process
has exact synonym: molecular function
id: GO:0003674
comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
comment: This is the same as GO molecular function
label: gene product or complex activity

Axiom
annotated source: molecular_function
annotated property: definition
annotated target: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
has db xref: GOC:pdt

catalytic activity
type: Class
subclass of: molecular_function

nucleobase-containing compound metabolic process
type: Class
subclass of: GO_0044238
subclass of: GO_1901360
definition: Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
has alternative id: GO:0055134
has exact synonym: cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
has exact synonym: cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism
has exact synonym: nucleobase, nucleoside, nucleotide and nucleic acid metabolism
has OBO namespace: biological_process
has_related_synonym: nucleobase, nucleoside and nucleotide metabolic process
has_related_synonym: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
id: GO:0006139
in subset: goslim pir
in subset: goslim plant

Axiom
annotated source: nucleobase-containing compound metabolic process
annotated property: definition
annotated target: Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
has db xref: GOC:ai

Axiom
annotated source: nucleobase-containing compound metabolic process
annotated property: has_related_synonym
annotated target: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
has db xref: GOC:dph
has db xref: GOC:tb

DNA metabolic process
type: Class
subclass of: GO_0090304
definition: Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
has alternative id: GO:0055132
has exact synonym: DNA metabolism
has exact synonym: cellular DNA metabolism
has OBO namespace: biological_process
id: GO:0006259
in subset: goslim agr
in subset: goslim candida
in subset: goslim chembl
in subset: goslim flybase ribbon
in subset: goslim metagenomics
in subset: goslim pir
in subset: goslim plant
in subset: goslim plant ribbon
in subset: goslim prokaryote ribbon

Axiom
annotated source: DNA metabolic process
annotated property: definition
annotated target: Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
has db xref: ISBN:0198506732

DNA repair
type: Class
subclass of: DNA metabolic process
subclass of: DNA damage response
definition: The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
has db xref: Wikipedia:DNA_repair
has OBO namespace: biological_process
id: GO:0006281
in subset: goslim drosophila
in subset: goslim euk cellular processes ribbon
in subset: goslim generic
in subset: goslim pir
in subset: goslim pombe
in subset: goslim prokaryote
in subset: goslim yeast

Axiom
annotated source: DNA repair
annotated property: definition
annotated target: The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
has db xref: PMID:11563486

response to stress
type: Class
subclass of: GO_0050896
definition: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
has OBO namespace: biological_process
has_related_synonym: response to abiotic stress
has_related_synonym: response to biotic stress
id: GO:0006950
in subset: goslim candida
in subset: goslim chembl
in subset: goslim drosophila
in subset: goslim metagenomics
in subset: goslim plant
in subset: goslim plant ribbon
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Axiom
annotated source: response to stress
annotated property: definition
annotated target: Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
has db xref: GOC:mah

DNA damage response
type: Class
subclass of: GO_0033554
definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
IAO_0000233: https://github.com/geneontology/go-ontology/issues/24775
has alternative id: GO:0034984
has broad synonym: response to DNA damage stimulus
has exact synonym: cellular DNA damage response
has exact synonym: cellular response to DNA damage stimulus
has exact synonym: response to genotoxic stress
has OBO namespace: biological_process
id: GO:0006974
in subset: goslim yeast

Axiom
annotated source: DNA damage response
annotated property: definition
annotated target: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
has db xref: GOC:go_curators

biological_process
type: Class
subclass of: process
disjoint with: OBI_0000011
definition: A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
definition: A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
definition: A process that emerges from two or more causally-connected macromolecular activities and has evolved to achieve a biological objective.
IAO_0000233: https://github.com/geneontology/go-ontology/issues/24968
created by: jl
creation date: 2012-09-19T15:05:24Z
has alternative id: GO:0000004
has alternative id: GO:0007582
has alternative id: GO:0044699
has db xref: Wikipedia:Biological_process
has exact synonym: biological process
has exact synonym: physiological process
has OBO namespace: biological_process
has_related_synonym: single organism process
has_related_synonym: single-organism process
id: GO:0008150
in subset: goslim candida
in subset: goslim chembl
in subset: goslim metagenomics
in subset: goslim pir
in subset: goslim plant
in subset: goslim pombe
in subset: goslim yeast
comment: A biological process is an evolved process
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
label: biological process

Axiom
annotated source: biological_process
annotated property: definition
annotated target: A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
has db xref: GOC:pdt

metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
IAO_0000233: https://github.com/geneontology/go-ontology/issues/26424
created by: jl
creation date: 2012-10-17T15:46:40Z
has alternative id: GO:0044236
has alternative id: GO:0044710
has db xref: Wikipedia:Metabolism
has exact synonym: metabolism
has narrow synonym: metabolic process resulting in cell growth
has narrow synonym: metabolism resulting in cell growth
has narrow synonym: multicellular organism metabolic process
has OBO namespace: biological_process
has_related_synonym: single-organism metabolic process
id: GO:0008152
in subset: gocheck do not annotate
in subset: goslim chembl
in subset: goslim euk cellular processes ribbon
in subset: goslim metagenomics
in subset: goslim pir
in subset: goslim plant
in subset: goslim prokaryote ribbon
comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.

Axiom
annotated source: metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
has db xref: GOC:go_curators
has db xref: ISBN:0198547684

cellular process
type: Class
subclass of: biological_process
definition: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
created by: jl
creation date: 2012-12-11T16:56:55Z
has alternative id: GO:0008151
has alternative id: GO:0044763
has alternative id: GO:0050875
has exact synonym: cell physiology
has exact synonym: cellular physiological process
has narrow synonym: cell growth and/or maintenance
has OBO namespace: biological_process
has_related_synonym: single-organism cellular process
id: GO:0009987
in subset: gocheck do not annotate
in subset: goslim plant
comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.

Axiom
annotated source: cellular process
annotated property: definition
annotated target: Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
has db xref: GOC:go_curators
has db xref: GOC:isa_complete

kinase activity
type: Class
subclass of: GO_0016772
subclass of: Restriction
  on property: is kinase activity
  has self: true
definition: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
has db xref: Reactome:R-HSA-6788855
has db xref: Reactome:R-HSA-6788867
has exact synonym: phosphokinase activity
id: GO:0016301
comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.

Axiom
annotated source: kinase activity
annotated property: definition
annotated target: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
has db xref: ISBN:0198506732

FN3KRP phosphorylates PsiAm, RibAm
type: Axiom
annotated source: kinase activity
annotated property: hasDbXref
annotated target: Reactome:R-HSA-6788855

FN3K phosphorylates ketosamines
type: Axiom
annotated source: kinase activity
annotated property: hasDbXref
annotated target: Reactome:R-HSA-6788867

transferase activity
type: Class
subclass of: catalytic activity