Protein identifier	Contig id	Start	Stop	Strand	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description	Hierarchy node
NA	contig01	1	984	+	blaTEMp_G162T	Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM	core	AMR	POINT	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	POINTN	984	1176	83.67	99.80	984	NZ_CP095603.1:148777-149952	blaTEM promoter region	NA	NA	NA
blaTEM-156	contig01	101	961	+	blaTEM-156	class A beta-lactamase TEM-156	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_061158039.1	class A beta-lactamase TEM-156	NF000531.2	TEM family class A beta-lactamase	blaTEM-156
blaPDC-114_blast	contig02	1	1191	+	blaPDC	PDC family class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTP	397	397	100.00	99.75	397	WP_061189306.1	class C beta-lactamase PDC-114	NF000422.6	PDC family class C beta-lactamase	blaPDC
blaOXA-436_partial	contig03	101	802	+	blaOXA	OXA-48 family class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	233	265	87.92	100.00	233	WP_058842180.1	OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-436	NF012161.0	class D beta-lactamase	blaOXA-48_fam
vanG	contig04	101	1147	+	vanG	D-alanine--D-serine ligase VanG	core	AMR	AMR	GLYCOPEPTIDE	VANCOMYCIN	EXACTP	349	349	100.00	100.00	349	WP_063856695.1	D-alanine--D-serine ligase VanG	NF000091.3	D-alanine--D-serine ligase VanG	vanG
NA	contig04	1261	2391	+	blaEC	BlaEC family class C beta-lactamase	plus	AMR	AMR	BETA-LACTAM	BETA-LACTAM	BLASTX	377	377	100.00	98.14	377	WP_063610930.1	extended-spectrum class C beta-lactamase EC-15	NA	NA	blaEC
NA	contig08	1	700	+	blaTEMp_G162T	Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM	core	AMR	POINT	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	POINTN	700	1176	59.52	99.71	700	NZ_CP095603.1:148777-149952	blaTEM promoter region	NA	NA	NA
NA	contig08	101	700	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIAL_CONTIG_ENDX	200	286	69.93	100.00	200	WP_061158039.1	class A beta-lactamase TEM-156	NA	NA	blaTEM
aph3pp-Ib_partial_5p_neg	contig09	1	675	-	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	PARTIAL_CONTIG_ENDP	225	267	81.27	100.00	217	WP_001082319.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NF032896.1	APH(3'') family aminoglycoside O-phosphotransferase	aph(3'')-Ib
sul2_partial_3p_neg	contig09	715	1377	-	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	PARTIAL_CONTIG_ENDP	221	271	81.55	100.00	221	WP_001043265.1	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	sul2
NA	contig10	486	1307	+	blaOXA	OXA-9 family oxacillin-hydrolyzing class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	274	274	100.00	99.64	274	WP_000722315.1	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	blaOXA-9_fam
NA	contig11	1	984	+	blaTEMp_G162T	Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM	core	AMR	POINT	BETA-LACTAM	AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID	POINTN	984	1176	83.67	96.04	984	NZ_CP095603.1:148777-149952	blaTEM promoter region	NA	NA	NA
blaTEM-internal_stop	contig11	113	547	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	144	286	50.35	97.22	144	WP_000027057.1	broad-spectrum class A beta-lactamase TEM-1	NA	NA	blaTEM
qacR-curated_blast	contig12	71	637	+	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	188	188	100.00	99.47	188	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA	qacR
emrD3-suppressed-in-vibrio	contig13	1	1137	+	emrD3	multidrug efflux MFS transporter EmrD-3	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTP	379	379	100.00	100.00	379	ABQ18953.1	multidrug efflux MFS transporter EmrD-3	NA	NA	emrD3
NA	contig14	1	1089	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA	pmrB
pmrB_C84R	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTP	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA	pmrB
NA	contig15	1	2905	+	23S_A2058T	Escherichia azithromycin/erythromycin/telithromycin resistant 23S	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	2905	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA	NA
NA	contig16	1	720	+	nfsA_K141STOP	Escherichia nitrofurantoin resistant NfsA	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA	nfsA
NA	contig16	1	720	+	nfsA_R15C	Escherichia nitrofurantoin resistant NfsA	core	AMR	POINT	NITROFURAN	NITROFURANTOIN	POINTX	240	240	100.00	99.17	240	WP_089631889.1	nitroreductase NfsA	NA	NA	nfsA
NA	contig17	1	247	+	ampC_T-14TGT	Escherichia cephalosporin resistant ampC	core	AMR	POINT	BETA-LACTAM	CEPHALOSPORIN	POINTN	247	245	100.00	99.19	247	NZ_CP041538.1:1149245-1149489	ampC/blaEC promoter region	NA	NA	NA
nimIJ_hmm	contigX	1	501	+	nimIJ	NimIJ family 5-nitroimidazole reductase	core	AMR	AMR	NITROIMIDAZOLE	NITROIMIDAZOLE	HMM	166	165	98.18	76.54	162	WP_005812825.1	NimIJ family 5-nitroimidazole reductase	NF000262.1	NimIJ family 5-nitroimidazole reductase	nimIJ