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Parent could be another biospecimen or a research participant.", "rdfs:label": "HTANParentID", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "HTAN Parent ID", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:HTANParentDataFileID", "@type": "rdfs:Class", "rdfs:comment": "HTAN Data File Identifier indicating the file(s) from which these files were derived", "rdfs:label": "HTANParentDataFileID", "rdfs:subClassOf": [ { "@id": "bts:File" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "HTAN Parent Data File ID", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:ClinicalDataTier2", "@type": "rdfs:Class", "rdfs:comment": "Tier 2 Cancer Data", "rdfs:label": "ClinicalDataTier2", "rdfs:subClassOf": [ { "@id": "bts:Patient" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Clinical Data Tier 2", "sms:required": "sms:false", "sms:requiresDependency": [ { "@id": "bts:Component" }, { "@id": "bts:HTANParticipantID" }, { "@id": "bts:TimepointLabel" }, { "@id": "bts:StartDaysfromIndex" }, { "@id": "bts:StopDaysfromIndex" }, { "@id": "bts:SentinelLymphNodeCount" }, { "@id": "bts:SentinelNodePositiveAssessmentCount" }, { "@id": "bts:TumorExtranodalExtensionIndicator" }, { "@id": "bts:SatelliteMetastasisPresentIndicator" }, { "@id": "bts:OtherBiopsyResectionSite" }, { "@id": "bts:ExtentofTumorResection" }, { "@id": "bts:PriorSitesofRadiation" }, { "@id": "bts:Immunosuppression" }, { "@id": "bts:ConcomitantMedicationReceivedType" }, { "@id": "bts:FamilyMemberVitalStatusIndicator" }, { "@id": "bts:COVID19OccurrenceIndicator" }, { "@id": "bts:COVID19CurrentStatus" }, { "@id": "bts:COVID19PositiveLabTestIndicator" }, { "@id": "bts:COVID19AntibodyTesting" }, { "@id": "bts:COVID19ComplicationsSeverity" }, { "@id": "bts:COVID19CancerTreatmentFollowup" }, { "@id": "bts:Ecigvapeuse" }, { "@id": "bts:Ecigvape30dayusenum" }, { "@id": "bts:Ecigvapetimesperday" }, { "@id": "bts:Typeofsmokeexposurecumulativeyears" }, { "@id": "bts:Chewingtobaccodailyusecount" }, { "@id": "bts:Secondhandsmokeexposureyears" }, { "@id": "bts:KnownGeneticPredispositionMutation" }, { "@id": "bts:HereditaryCancerPredispositionSyndrome" }, { "@id": "bts:CancerAssociatedGeneMutations" }, { "@id": "bts:MutationalSignatures" }, { "@id": "bts:MismatchRepairSystemStatus" }, { "@id": "bts:LabTestsforMMRStatus" }, { "@id": "bts:ModeofCancerDetection" }, { "@id": "bts:EducationLevel" }, { "@id": "bts:CountryofBirth" }, { "@id": "bts:MedicallyUnderservedArea" }, { "@id": "bts:RuralvsUrban" }, { "@id": "bts:CancerIncidence" }, { "@id": "bts:CancerIncidenceLocation" } ], "sms:validationRules": [] }, { "@id": "bts:TimepointLabel", "@type": "rdfs:Class", "rdfs:comment": "Label to identify the time point at which the clinical data or biospecimen was obtained (e.g. Baseline, End of Treatment, Overall survival, Final). NO PHI/PII INFORMATION IS ALLOWED.", "rdfs:label": "TimepointLabel", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Timepoint Label", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:StartDaysfromIndex", "@type": "rdfs:Class", "rdfs:comment": "Number of days from the date of birth (index date) to the date of an event (e.g. exposure to environmental factor, treatment start, etc.). If not applicable please enter 'Not Applicable'", "rdfs:label": "StartDaysfromIndex", "rdfs:subClassOf": [ { "@id": "bts:Patient" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Start Days from Index", "sms:required": "sms:true", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:StopDaysfromIndex", "@type": "rdfs:Class", "rdfs:comment": "Number of days from the date of birth (index date) to the end date of the event (e.g. exposure to environmental factor, treatment start, etc.). Note: if the event occurs at a single time point, e.g. a diagnosis or a lab test, the values for this column is 'Not Applicable'", "rdfs:label": "StopDaysfromIndex", "rdfs:subClassOf": [ { "@id": "bts:Patient" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Stop Days from Index", "sms:required": "sms:false", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:SentinelLymphNodeCount", "@type": "rdfs:Class", "rdfs:comment": "Numeric count of sentinel lymph nodes.", "rdfs:label": "SentinelLymphNodeCount", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Sentinel Lymph Node Count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SentinelNodePositiveAssessmentCount", "@type": "rdfs:Class", "rdfs:comment": "The number or amount of metastatic neoplasms related to the confirmed presence of disease or specific microorganisms during examination of the first rounded mass of lymphatic tissue to which cancer is likely to spread from the primary tumor.", "rdfs:label": "SentinelNodePositiveAssessmentCount", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Sentinel Node Positive Assessment Count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:TumorExtranodalExtensionIndicator", "@type": "rdfs:Class", "rdfs:comment": "The indicator to determine extranodal involvement or extent of the disease.", "rdfs:label": "TumorExtranodalExtensionIndicator", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Absent" }, { "@id": "bts:Indeterminate" }, { "@id": "bts:NO" }, { "@id": "bts:YES" }, { "@id": "bts:Nosourcedocumentation" }, { "@id": "bts:Notapplicable" }, { "@id": "bts:Notsampledordissected" }, { "@id": "bts:Present" }, { "@id": "bts:Present-extensive" }, { "@id": "bts:Present-minimal" }, { "@id": "bts:UNKNOWN" }, { "@id": "bts:Unspecified" } ], "sms:displayName": "Tumor Extranodal Extension Indicator", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SatelliteMetastasisPresentIndicator", "@type": "rdfs:Class", "rdfs:comment": "A yes/no indicator to ask if intransit metastases or satellite lesions are present.", "rdfs:label": "SatelliteMetastasisPresentIndicator", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Satellite Metastasis Present Indicator", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:OtherBiopsyResectionSite", "@type": "rdfs:Class", "rdfs:comment": "A description of the location on or within the human body where the surgical biopsy/resection procedure was performed (Not covered under HTAN Clinical Data Tier 1)", "rdfs:label": "OtherBiopsyResectionSite", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Other Biopsy Resection Site", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ExtentofTumorResection", "@type": "rdfs:Class", "rdfs:comment": "The degree to which the lesion has been cut out, or resected.", "rdfs:label": "ExtentofTumorResection", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:GrossTotalResection" }, { "@id": "bts:OpenBiopsy" }, { "@id": "bts:SubtotalResection" }, { "@id": "bts:ExtensiveSubtotal" }, { "@id": "bts:Minor" }, { "@id": "bts:Optimaldebulking" }, { "@id": "bts:Other" }, { "@id": "bts:Partialdebulking" }, { "@id": "bts:Segmental" }, { "@id": "bts:Suboptimal" }, { "@id": "bts:Suboptimaldebulking" }, { "@id": "bts:NTR" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" }, { "@id": "bts:NotApplicable" } ], "sms:displayName": "Extent of Tumor Resection", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:PriorSitesofRadiation", "@type": "rdfs:Class", "rdfs:comment": "The anatomic location to which radiation treatment was administered to a patient prior to enrollment on a protocol.", "rdfs:label": "PriorSitesofRadiation", "rdfs:subClassOf": [ { "@id": "bts:Therapy" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Abdomentotal" }, { "@id": "bts:AbdominalWall" }, { "@id": "bts:Acetabulum" }, { "@id": "bts:Adenoid" }, { "@id": "bts:Adipose" }, { "@id": "bts:Adrenal" }, { "@id": "bts:AlveolarRidge" }, { "@id": "bts:AmnioticFluid" }, { "@id": "bts:AmpullaofVater" }, { "@id": "bts:AnalSphincter" }, { "@id": "bts:Ankle" }, { "@id": "bts:Anorectum" }, { "@id": "bts:AntecubitalFossa" }, { "@id": "bts:Antrum" }, { "@id": "bts:Anus" }, { "@id": "bts:Aorta" }, { "@id": "bts:AorticBody" }, { "@id": "bts:Appendix" }, { "@id": "bts:AqueousFluid" }, { "@id": "bts:Arm" }, { "@id": "bts:Artery" }, { "@id": "bts:AscendingColon" }, { "@id": "bts:AscendingColonHepaticFlexure" }, { "@id": "bts:Ascites" }, { "@id": "bts:AuditoryCanal" }, { "@id": "bts:AutonomicNervousSystem" }, { "@id": "bts:Axilla" }, { "@id": "bts:Back" }, { "@id": "bts:BileDuct" }, { "@id": "bts:Bladder" }, { "@id": "bts:Blood" }, { "@id": "bts:BloodVessel" }, { "@id": "bts:Bodytotal" }, { "@id": "bts:Bone" }, { "@id": "bts:BoneMarrow" }, { "@id": "bts:Bonenon-spine" }, { "@id": "bts:Bowel" }, { "@id": "bts:Brain" }, { "@id": "bts:BrainStem" }, { "@id": "bts:Breast" }, { "@id": "bts:BroadLigament" }, { "@id": "bts:Bronchiole" }, { "@id": "bts:Bronchus" }, { "@id": "bts:Brow" }, { "@id": "bts:BuccalCavity" }, { "@id": "bts:BuccalMucosa" }, { "@id": "bts:Buttock" }, { "@id": "bts:Calf" }, { "@id": "bts:Capillary" }, { "@id": "bts:Cardia" }, { "@id": "bts:Carina" }, { "@id": "bts:CarotidArtery" }, { "@id": "bts:CarotidBody" }, { "@id": "bts:Cartilage" }, { "@id": "bts:Cecum" }, { "@id": "bts:Cell-Line" }, { "@id": "bts:CentralNervousSystem" }, { "@id": "bts:Cerebellum" }, { "@id": "bts:CerebralCortex" }, { "@id": "bts:CerebrospinalFluid" }, { "@id": "bts:Cerebrum" }, { "@id": "bts:CervicalSpine" }, { "@id": "bts:Cervix" }, { "@id": "bts:Chest" }, { "@id": "bts:ChestWall" }, { "@id": "bts:Chin" }, { "@id": "bts:Clavicle" }, { "@id": "bts:Clitoris" }, { "@id": "bts:Colon" }, { "@id": "bts:ColonMucosaOnly" }, { "@id": "bts:CommonDuct" }, { "@id": "bts:Conjunctiva" }, { "@id": "bts:ConnectiveTissue" }, { "@id": "bts:Dermal" }, { "@id": "bts:DescendingColon" }, { "@id": "bts:Diaphragm" }, { "@id": "bts:DistantSite" }, { "@id": "bts:Duodenum" }, { "@id": "bts:Ear" }, { "@id": "bts:EarCanal" }, { "@id": "bts:EarPinna(External)" }, { "@id": "bts:Elbow" }, { "@id": "bts:EndocrineGland" }, { "@id": "bts:Epididymis" }, { "@id": "bts:EpiduralSpace" }, { "@id": "bts:Epitrochlear" }, { "@id": "bts:EsophagogastricJunction" }, { "@id": "bts:Esophagus" }, { "@id": "bts:EsophagusMucosaOnly" }, { "@id": "bts:Eye" }, { "@id": "bts:FallopianTube" }, { "@id": "bts:FemoralArtery" }, { "@id": "bts:FemoralVein" }, { "@id": "bts:Femur" }, { "@id": "bts:Fibroblasts" }, { "@id": "bts:Fibula" }, { "@id": "bts:Finger" }, { "@id": "bts:FloorofMouth" }, { "@id": "bts:Fluid" }, { "@id": "bts:Foot" }, { "@id": "bts:Forearm" }, { "@id": "bts:Forehead" }, { "@id": "bts:Foreskin" }, { "@id": "bts:FrontalCortex" }, { "@id": "bts:FrontalLobe" }, { "@id": "bts:FundusofStomach" }, { "@id": "bts:Gallbladder" }, { "@id": "bts:Ganglia" }, { "@id": "bts:GastroesophagealJunction" }, { "@id": "bts:GastrointestinalTract" }, { "@id": "bts:GastrointestinalIntestine" }, { "@id": "bts:GenitourinaryNOS" }, { "@id": "bts:Groin" }, { "@id": "bts:Gum" }, { "@id": "bts:Hand" }, { "@id": "bts:HardPalate" }, { "@id": "bts:HeadFaceOrNeckNos" }, { "@id": "bts:HeadandNeck" }, { "@id": "bts:Heart" }, { "@id": "bts:Hepatic" }, { "@id": "bts:HepaticDuct" }, { "@id": "bts:HepaticVein" }, { "@id": "bts:Hilar" }, { "@id": "bts:Hip" }, { "@id": "bts:Hippocampus" }, { "@id": "bts:Humerus" }, { "@id": "bts:Hypopharynx" }, { "@id": "bts:IleocecalValve" }, { "@id": "bts:Ileum" }, { "@id": "bts:Ilium" }, { "@id": "bts:IndexFinger" }, { "@id": "bts:Ischium" }, { "@id": "bts:IsletCells" }, { "@id": "bts:Jaw" }, { "@id": "bts:Jejunum" }, { "@id": "bts:Joint" }, { "@id": "bts:Kidney" }, { "@id": "bts:Knee" }, { "@id": "bts:LacrimalGland" }, { "@id": "bts:LargeBowel" }, { "@id": "bts:Laryngopharynx" }, { "@id": "bts:Larynx" }, { "@id": "bts:Leg" }, { "@id": "bts:Leptomeninges" }, { "@id": "bts:Ligament" }, { "@id": "bts:Lip" }, { "@id": "bts:Liver" }, { "@id": "bts:LumbarSpine" }, { "@id": "bts:Lung" }, { "@id": "bts:LymphNode" }, { "@id": "bts:LymphNode(s)Axilla" }, { "@id": "bts:LymphNode(s)Cervical" }, { "@id": "bts:LymphNode(s)Distant" }, { "@id": "bts:LymphNode(s)Epitrochlear" }, { "@id": "bts:LymphNode(s)Femoral" }, { "@id": "bts:LymphNode(s)Hilar" }, { "@id": "bts:LymphNode(s)Iliac-Common" }, { "@id": "bts:LymphNode(s)Iliac-External" }, { "@id": "bts:LymphNode(s)Inguinal" }, { "@id": "bts:LymphNode(s)InternalMammary" }, { "@id": "bts:LymphNode(s)Mammary" }, { "@id": "bts:LymphNode(s)Mediastinal" }, { "@id": "bts:LymphNode(s)Mesenteric" }, { "@id": "bts:LymphNode(s)Occipital" }, { "@id": "bts:LymphNode(s)Paraaortic" }, { "@id": "bts:LymphNode(s)Parotid" }, { "@id": "bts:LymphNode(s)Pelvic" }, { "@id": "bts:LymphNode(s)Popliteal" }, { "@id": "bts:LymphNode(s)Regional" }, { "@id": "bts:LymphNode(s)Retroperitoneal" }, { "@id": "bts:LymphNode(s)Scalene" }, { "@id": "bts:LymphNode(s)Splenic" }, { "@id": "bts:LymphNode(s)Subclavicular" }, { "@id": "bts:LymphNode(s)Submandibular" }, { "@id": "bts:LymphNode(s)Supraclavicular" }, { "@id": "bts:Mandible" }, { "@id": "bts:Mantle" }, { "@id": "bts:Maxilla" }, { "@id": "bts:MediastinalSoftTissue" }, { "@id": "bts:Mediastinum" }, { "@id": "bts:Mesentery" }, { "@id": "bts:Mesothelium" }, { "@id": "bts:MiddleFinger" }, { "@id": "bts:Mitochondria" }, { "@id": "bts:Muscle" }, { "@id": "bts:Nails" }, { "@id": "bts:NasalCavity" }, { "@id": "bts:NasalSoftTissue" }, { "@id": "bts:Nasopharynx" }, { "@id": "bts:Neck" }, { "@id": "bts:Nerve" }, { "@id": "bts:Nerve(s)Cranial" }, { "@id": "bts:OccipitalCortex" }, { "@id": "bts:OcularOrbits" }, { "@id": "bts:Omentum" }, { "@id": "bts:OralCavity" }, { "@id": "bts:OralCavityMucosaOnly" }, { "@id": "bts:Oropharynx" }, { "@id": "bts:Other" }, { "@id": "bts:Ovary" }, { "@id": "bts:Palate" }, { "@id": "bts:Pancreas" }, { "@id": "bts:Parametrium" }, { "@id": "bts:ParaspinalGanglion" }, { "@id": "bts:Parathyroid" }, { "@id": "bts:ParotidGland" }, { "@id": "bts:Patella" }, { "@id": "bts:Pelvis" }, { "@id": "bts:Penis" }, { "@id": "bts:Pericardium" }, { "@id": "bts:PeriorbitalSoftTissue" }, { "@id": 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"@id": "bts:Tibia" }, { "@id": "bts:Tongue" }, { "@id": "bts:Tonsil" }, { "@id": "bts:Tonsil(Pharyngeal)" }, { "@id": "bts:Trachea/MajorBronchi" }, { "@id": "bts:TransverseColon" }, { "@id": "bts:Trunk" }, { "@id": "bts:UmbilicalCord" }, { "@id": "bts:Unknown" }, { "@id": "bts:Ureter" }, { "@id": "bts:Urethra" }, { "@id": "bts:UrinaryTract" }, { "@id": "bts:Uterus" }, { "@id": "bts:Uvula" }, { "@id": "bts:Vagina" }, { "@id": "bts:VasDeferens" }, { "@id": "bts:Vein" }, { "@id": "bts:Venous" }, { "@id": "bts:Vertebra" }, { "@id": "bts:Vulva" }, { "@id": "bts:WhiteBloodCells" }, { "@id": "bts:Wrist" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Prior Sites of Radiation", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Immunosuppression", "@type": "rdfs:Class", "rdfs:comment": "The indicator that describes whether or not immunosuppressive therapy was administered.", "rdfs:label": "Immunosuppression", "rdfs:subClassOf": [ { "@id": "bts:Therapy" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:NotDone" } ], "sms:displayName": "Immunosuppression", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ConcomitantMedicationReceivedType", "@type": "rdfs:Class", "rdfs:comment": "An enumerated list of the type of concomitant medication received by the patient.", "rdfs:label": "ConcomitantMedicationReceivedType", "rdfs:subClassOf": [ { "@id": "bts:Therapy" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Anticoagulantagents" }, { "@id": "bts:Anticonvulsant" }, { "@id": "bts:Antifungal" }, { "@id": "bts:Antiplateletagents" }, { "@id": "bts:Antidepressants-ModerateCYP2D6inhibitors" }, { "@id": "bts:Antidepressants-StrongCYP2D6inhibitors" }, { "@id": "bts:Antidepressants-weakCYP2D2inhibitorsornon-inhibitors" }, { "@id": "bts:Anxiolyticsorsedatives" }, { "@id": "bts:Aspirin" }, { "@id": "bts:Bisphosphonatesfortreatment/preventionofboneloss" }, { "@id": "bts:Corticosteroid" }, { "@id": "bts:COX-2inhibitor" }, { "@id": "bts:Decadron" }, { "@id": "bts:Diabetes-Insulin" }, { "@id": "bts:Diabetes-Metformincontainingagents" }, { "@id": "bts:Growthfactor" }, { "@id": "bts:Intravaginalestrogenpreparations" }, { "@id": "bts:Lipid-loweringdrugs" }, { "@id": "bts:Non-prescriptionsupplementsformemory" }, { "@id": "bts:Non-prescriptionsupplementsforreliefofhotflashes" }, { "@id": "bts:Non-steroidalanti-inflammatoryagents" }, { "@id": "bts:Opioids" }, { "@id": "bts:Other" }, { "@id": "bts:Prescriptionmedicationsformemory" }, { "@id": "bts:Prescriptionmedicationsforreliefofhotflashes" }, { "@id": "bts:Prophylacticantiplatelettherapy" }, { "@id": "bts:Tricyclicantidepressants" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Concomitant Medication Received Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:FamilyMemberVitalStatusIndicator", "@type": "rdfs:Class", "rdfs:comment": "The response indicates whether the family member of the patient with a history of cancer is alive. (Extension to GDC attributes in Family History Tier 1)", "rdfs:label": "FamilyMemberVitalStatusIndicator", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:VitalStatusAlive" }, { "@id": "bts:VitalStatusDead" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Family Member Vital Status Indicator", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:COVID19OccurrenceIndicator", "@type": "rdfs:Class", "rdfs:comment": "The indicator that describes whether or not a COVID-19 infectious disorder occurred.", "rdfs:label": "COVID19OccurrenceIndicator", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:NotDone" } ], "sms:displayName": "COVID19 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describes whether or not there was a COVID-19 positive test result.", "rdfs:label": "COVID19PositiveLabTestIndicator", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:NotDone" } ], "sms:displayName": "COVID19 Positive Lab Test Indicator", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:COVID19AntibodyTesting", "@type": "rdfs:Class", "rdfs:comment": "Text term that demonstrates the test results of immunoglobulin M (IgM) and immunoglobulin G (IgG) antibodies to the SARS-CoV-2 virus in subject serum samples.", "rdfs:label": "COVID19AntibodyTesting", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:SARS-CoV-2IgMantibodypositive" }, { "@id": 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"bts:Unknown" } ], "sms:displayName": "COVID19 Complications Severity", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:COVID19CancerTreatmentFollowup", "@type": "rdfs:Class", "rdfs:comment": "Indicator that describes if cancer treatment was modified for the patient due to COVID-19 infectious disorder", "rdfs:label": "COVID19CancerTreatmentFollowup", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotApplicable" } ], "sms:displayName": "COVID19 Cancer Treatment Followup", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Ecigvapeuse", "@type": "rdfs:Class", "rdfs:comment": "Use of non-traditional cigarette nicotine delivery device (electronic cigarette, ENDS - electronic nicotine delivery system)", "rdfs:label": "Ecigvapeuse", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Current" }, { "@id": "bts:Former" }, { "@id": "bts:Never" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Ecig vape use", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Ecigvape30dayusenum", "@type": "rdfs:Class", "rdfs:comment": "Number of days e-cigarettes or vaping device was used in the last 30 days", "rdfs:label": "Ecigvape30dayusenum", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Ecig vape 30 day use num", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Ecigvapetimesperday", "@type": "rdfs:Class", "rdfs:comment": "e-cig frequency of use (times per day—one “time” consists of around 15 puffs or lasts around 10 minutes)", "rdfs:label": "Ecigvapetimesperday", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Ecig vape times per day", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Typeofsmokeexposurecumulativeyears", "@type": "rdfs:Class", "rdfs:comment": "The number of cumulative years of the patient's specific type of smoke exposure", "rdfs:label": "Typeofsmokeexposurecumulativeyears", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Type of smoke exposure cumulative years", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Chewingtobaccodailyusecount", "@type": "rdfs:Class", "rdfs:comment": "The quantity of daily use of tobacco, in the form of a plug, usually flavored, for chewing rather than smoking.", "rdfs:label": "Chewingtobaccodailyusecount", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Chewing tobacco daily use count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Secondhandsmokeexposureyears", "@type": "rdfs:Class", "rdfs:comment": "The number of cumulative years of the patient's exposure to second-hand cigarette smoke", "rdfs:label": "Secondhandsmokeexposureyears", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Second hand smoke exposure years", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:KnownGeneticPredispositionMutation", "@type": "rdfs:Class", "rdfs:comment": "A yes/no/unknown indicator to identify whether there is a known genetic predisposition mutation present in the patient.", "rdfs:label": "KnownGeneticPredispositionMutation", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Known Genetic Predisposition Mutation", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HereditaryCancerPredispositionSyndrome", "@type": "rdfs:Class", "rdfs:comment": "History of presence of inherited genetic predisposition syndrome that confers heightened susceptibility to cancer in the patient.", "rdfs:label": "HereditaryCancerPredispositionSyndrome", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Alpha-1antitrypsin" }, { "@id": "bts:Attenuatedfamilialadenomatouspolyposis" }, { "@id": "bts:BAP1mutantdisease" }, { "@id": "bts:Beckwith-Wiedemann" }, { "@id": "bts:Biliarydisorder" }, { "@id": "bts:Birt-Hogg-Dubesyndrome" }, { "@id": "bts:Carneycomplex" }, { "@id": "bts:Cirrhosisunknownetiology" }, { "@id": "bts:Constitutionalmismatchrepairdeficiency" }, { "@id": "bts:Familialadenomatouspolyposis" }, { "@id": "bts:Familialgastrointestinalstromaltumor" }, { 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"CancerAssociatedGeneMutations", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:APCmutation" }, { "@id": "bts:ALKmutation" }, { "@id": "bts:ARFmutation" }, { "@id": "bts:ATMmutation" }, { "@id": "bts:ATRXmutation" }, { "@id": "bts:ACVR1mutation" }, { "@id": "bts:BAP1mutation" }, { "@id": "bts:BMPR1Amutation" }, { "@id": "bts:BLMmutation" }, { "@id": "bts:BRCA1mutation" }, { "@id": "bts:BRCA1and2mutation" }, { "@id": "bts:BRCA2mutation" }, { "@id": "bts:BRAFmutation" }, { "@id": "bts:CDH1mutation" }, { "@id": "bts:CDKN2Amutation" }, { "@id": "bts:CDKN2Aandp14ARFmutation" }, { "@id": "bts:CHKmutation" }, { "@id": "bts:ETV6mutation" }, { "@id": "bts:EGFRmutation" }, { "@id": "bts:FHmutation" }, { "@id": "bts:FLCNmutation" }, { "@id": "bts:GREM1mutation" }, { "@id": "bts:HOXB13mutation" }, { "@id": "bts:H3K27Mmutation" }, { "@id": "bts:H3G34R/Vmutation" }, { "@id": "bts:IKZF1mutation" }, { "@id": "bts:KITmutation" }, { "@id": "bts:KRASmutation" }, { "@id": "bts:MAXmutation" }, { "@id": "bts:MEN1mutation" }, { "@id": "bts:METmutation" }, { "@id": "bts:MLH1mutation" }, { "@id": "bts:MSH2mutation" }, { "@id": "bts:MSH6mutation" }, { "@id": "bts:MUTYHmutation" }, { "@id": "bts:NF1mutation" }, { "@id": "bts:NF2mutation" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:NotReported" }, { "@id": "bts:P14ARFmutation" }, { "@id": "bts:PALB2mutation" }, { "@id": "bts:PAX5mutation" }, { "@id": "bts:PDGFRAmutation" }, { "@id": "bts:PHOX2Bmutation" }, { "@id": "bts:PMS2mutation" }, { "@id": "bts:PolDmutation" }, { "@id": "bts:PolEmutation" }, { "@id": "bts:POT1mutation" }, { "@id": "bts:PRKAR1Amutation" }, { "@id": "bts:PTCHmutation" }, { "@id": "bts:PTENmutation" }, { "@id": "bts:ROS1mutation" }, { "@id": "bts:RB1mutation" }, { "@id": "bts:RETmutation" }, { "@id": "bts:SDHAF2mutation" }, { "@id": "bts:SDHBmutation" }, { "@id": "bts:SDHCmutation" }, { "@id": "bts:SDHDmutation" }, { "@id": "bts:SETD2mutation" }, { "@id": "bts:SMAD4mutation" }, { "@id": "bts:SMARCA4mutation" }, { "@id": "bts:SMARCB1mutation" }, { "@id": "bts:STK11mutation" }, { "@id": "bts:TMEM127mutation" }, { "@id": "bts:TP53mutation" }, { "@id": "bts:TSC1mutation" }, { "@id": "bts:TSC2mutation" }, { "@id": "bts:Unknown" }, { "@id": "bts:VHLmutation" } ], "sms:displayName": "Cancer Associated Gene Mutations", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MutationalSignatures", "@type": "rdfs:Class", "rdfs:comment": "Mutational signatures identified in the patient, includes signatures linked to selected exogenous carcinogens, endogenous and enzymatic modification of DNA or defective DNA repair. Note: Include only outputs of tests that were completed clinically for the participant and only include data from a diagnostic array that was completed prior to research sequencing was done.", "rdfs:label": "MutationalSignatures", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:UVlightinducedmutations" }, { "@id": "bts:AlkylatingAgents(Temozolomide)inducedmutations" }, { "@id": "bts:Tobaccouseassociatedmutations" }, { "@id": "bts:Ageofcancerdiagnosis" }, { "@id": "bts:Transcriptionalstrandbias" }, { "@id": "bts:Microsatelliteinstability(additionsanddeletions)" }, { "@id": "bts:MethylatedCpGsequencesmutagenesis(deaminationof5-methyl-cytosine)" }, { "@id": "bts:ActivationInducedDeaminases(AID)associatedmutations" }, { "@id": "bts:APOBECenzymesassociatedmutations" }, { "@id": "bts:Alteredactivityoftheerror-pronepolymerasePOLε(POLE)" }, { "@id": "bts:Localizedsubstitutionhypermutation(kataegis)" }, { "@id": "bts:DNAMMRDeficiency" }, { "@id": "bts:Iggenehypermutation" }, { "@id": "bts:Signature1A" }, { "@id": "bts:Signature1B" }, { "@id": "bts:Signature2" }, { "@id": "bts:Signature3" }, { "@id": "bts:Signature4" }, { "@id": "bts:Signature5" }, { "@id": "bts:Signature6" }, { "@id": "bts:Signature7" }, { "@id": "bts:Signature8" }, { "@id": "bts:Signature9" }, { "@id": "bts:Signature10" }, { "@id": "bts:Signature11" }, { "@id": "bts:Signature12" }, { "@id": "bts:Signature13" }, { "@id": "bts:Signature14" }, { "@id": "bts:Signature15" }, { "@id": "bts:Signature16" }, { "@id": "bts:Signature17" }, { "@id": "bts:Signature18" }, { "@id": "bts:Signature19" }, { "@id": "bts:Signature20" }, { "@id": "bts:Signature21" }, { "@id": "bts:Other" }, { "@id": "bts:Datanotavailable" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:NotReported" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Mutational Signatures", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MismatchRepairSystemStatus", "@type": "rdfs:Class", "rdfs:comment": "The text that best describes the condition or state of MMR (mismatch repair system) in the patient", "rdfs:label": "MismatchRepairSystemStatus", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:MismatchrepairdeficiencyMMRD" }, { "@id": "bts:MismatchrepairproficiencyMMPP" }, { "@id": "bts:MicrosatelliteinstabilityhighMSIH" }, { "@id": "bts:MicrosatellitestableMSS" }, { "@id": "bts:Unknownorother" } ], "sms:displayName": "Mismatch Repair System Status", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LabTestsforMMRStatus", "@type": "rdfs:Class", "rdfs:comment": "Laboratory tests used to evaluate the status of mismatch repair pathways", "rdfs:label": "LabTestsforMMRStatus", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:IHCstainingformismatchrepairproteins" }, { "@id": "bts:PCRtoevaluatemicrosatelliteinstability" }, { "@id": "bts:MLH1 promotermethylationanalysis" }, { "@id": "bts:BRAF sequencing" }, { "@id": "bts:Other" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Lab Tests for MMR Status", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ModeofCancerDetection", "@type": "rdfs:Class", "rdfs:comment": "Text term used to describe the mode of cancer detection, like standard of care screening or random detection", "rdfs:label": "ModeofCancerDetection", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:StandardofCareScreening" }, { "@id": "bts:ClinicalExaminationofunrelatedcancersymptoms" }, { "@id": "bts:Incidentaloma" }, { "@id": "bts:IntervalCancer" }, { "@id": "bts:Datanotavailable" } ], "sms:displayName": "Mode of Cancer Detection", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:EducationLevel", "@type": "rdfs:Class", "rdfs:comment": "Highest level of education that the patient completed (direct patient-derived information)", "rdfs:label": "EducationLevel", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Bachelor'sdegree" }, { "@id": "bts:Doctoraldegreeorprofessionaldegree" }, { "@id": "bts:Gradeschool" }, { "@id": "bts:Graduateorprofessionaldegree" }, { "@id": "bts:Highschoolgraduate(includingequivalency)" }, { "@id": "bts:Master'sdegree" }, { "@id": "bts:Noformaleducation" }, { "@id": "bts:Nothighschoolgraduate" }, { "@id": "bts:Somecollegeorassociatedegree" }, { "@id": "bts:Datanotavailable" } ], "sms:displayName": "Education Level", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CountryofBirth", "@type": "rdfs:Class", "rdfs:comment": "Country where the patient was born.", "rdfs:label": "CountryofBirth", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Afghanistan" }, { "@id": "bts:Albania" }, { "@id": "bts:Algeria" }, { "@id": "bts:Andorra" }, { "@id": "bts:Angola" }, { "@id": "bts:Anguilla" }, { "@id": "bts:AntiguaandBarbuda" }, { "@id": "bts:Argentina" }, { "@id": "bts:Armenia" }, { "@id": "bts:Aruba" }, { "@id": "bts:Australia" }, { "@id": "bts:Austria" }, { "@id": "bts:Azerbaijan" }, { "@id": "bts:Bahamas" }, { "@id": "bts:Bahrain" }, { "@id": "bts:Bangladesh" }, { "@id": "bts:Barbados" }, { "@id": "bts:Belarus" }, { "@id": "bts:Belgium" }, { "@id": "bts:Belize" }, { "@id": "bts:Benin" }, { "@id": "bts:Bermuda" }, { "@id": "bts:Bhutan" }, { "@id": "bts:Bolivia" }, { "@id": "bts:BosniaandHerzegovina" }, { "@id": "bts:Botswana" }, { "@id": "bts:Brazil" }, { "@id": "bts:Brunei" }, { "@id": "bts:Bulgaria" }, { "@id": "bts:BurkinaFaso" }, { "@id": "bts:Burundi" }, { "@id": "bts:Cambodia" }, { "@id": "bts:Cameroon" }, { "@id": "bts:Canada" }, { "@id": "bts:CapeVerde" }, { "@id": "bts:CaymanIslands" }, { "@id": "bts:CentralAfricanRepublic" }, { "@id": "bts:Chad" }, { "@id": "bts:Chile" }, { "@id": "bts:China" }, { "@id": "bts:Colombia" }, { "@id": "bts:Comoros" }, { "@id": "bts:Congo" }, { "@id": "bts:CookIslands" }, { "@id": "bts:CostaRica" }, { "@id": "bts:Coted'Ivoire" }, { "@id": "bts:Croatia" }, { "@id": "bts:Cuba" }, { "@id": "bts:Curacao" }, { "@id": "bts:Cyprus" }, { "@id": "bts:CzechRepublic(Czechia)" }, { "@id": "bts:DemocraticRepublicoftheCongo" }, { "@id": "bts:Denmark" }, { "@id": "bts:Djibouti" }, { "@id": "bts:Dominica" }, { "@id": "bts:DominicanRepublic" }, { "@id": "bts:Ecuador" }, { "@id": "bts:Egypt" }, { "@id": "bts:ElSalvador" }, { "@id": "bts:EquatorialGuinea" }, { "@id": "bts:Eritrea" }, { "@id": "bts:Estonia" }, { "@id": "bts:Eswatini" }, { "@id": "bts:Ethiopia" }, { "@id": "bts:FalklandIslands(Malvinas)" }, { "@id": "bts:FaroeIslands" }, { "@id": "bts:FederatedStatesofMicronesia" }, { "@id": "bts:Fiji" }, { "@id": "bts:Finland" }, { "@id": "bts:France" }, { "@id": "bts:FrenchGuiana" }, { "@id": "bts:FrenchPolynesia" }, { "@id": "bts:Gabon" }, { "@id": "bts:Gambia" }, { "@id": "bts:Georgia" }, { "@id": "bts:Germany" }, { "@id": "bts:Ghana" }, { "@id": "bts:Gibraltar" }, { "@id": "bts:Greece" }, { "@id": "bts:Greenland" }, { "@id": "bts:Grenada" }, { "@id": "bts:Guadeloupe" }, { "@id": "bts:Guam" }, { "@id": "bts:Guatemala" }, { "@id": "bts:Guernsey" }, { "@id": "bts:Guinea" }, { "@id": "bts:Guinea-Bissau" }, { "@id": "bts:Guyana" }, { "@id": "bts:Haiti" }, { "@id": "bts:HolySee" }, { "@id": "bts:Honduras" }, { "@id": "bts:HongKong" }, { "@id": "bts:Hungary" }, { "@id": "bts:Iceland" }, { "@id": "bts:India" }, { "@id": "bts:Indonesia" }, { "@id": "bts:Iran" }, { "@id": "bts:Iraq" }, { "@id": "bts:Ireland" }, { "@id": "bts:IsleofMan" }, { "@id": "bts:Israel" }, { "@id": "bts:Italy" }, { "@id": "bts:Jamaica" }, { "@id": "bts:Japan" }, { "@id": "bts:Jersey" }, { "@id": "bts:Jordan" }, { "@id": "bts:Kazakhstan" }, { "@id": "bts:Kenya" }, { "@id": "bts:Kiribati" }, { "@id": "bts:Kosovo" }, { "@id": "bts:Kuwait" }, { "@id": "bts:Kyrgyzstan" }, { "@id": "bts:Laos" }, { "@id": "bts:Latvia" }, { "@id": "bts:Lebanon" }, { "@id": "bts:Lesotho" }, { "@id": "bts:Liberia" }, { "@id": "bts:Libya" }, { "@id": "bts:Liechtenstein" }, { "@id": "bts:Lithuania" }, { "@id": "bts:Luxembourg" }, { "@id": "bts:Macau" }, { "@id": "bts:Madagascar" }, { "@id": "bts:Malawi" }, { "@id": "bts:Malaysia" }, { "@id": "bts:Maldives" }, { "@id": "bts:Mali" }, { "@id": "bts:Malta" }, { "@id": "bts:MarshallIslands" }, { "@id": "bts:Martinique" }, { "@id": "bts:Mauritania" }, { "@id": "bts:Mauritius" }, { "@id": "bts:Mayotte" }, { "@id": "bts:Mexico" }, { "@id": "bts:Moldova" }, { "@id": "bts:Monaco" }, { "@id": "bts:Mongolia" }, { "@id": "bts:Montenegro" }, { "@id": "bts:Montserrat" }, { "@id": "bts:Morocco" }, { "@id": "bts:Mozambique" }, { "@id": "bts:Myanmar" }, { "@id": "bts:Namibia" }, { "@id": "bts:Nauru" }, { "@id": "bts:Nepal" }, { "@id": "bts:Netherlands" }, { "@id": "bts:NewCaledonia" }, { "@id": "bts:NewZealand" }, { "@id": "bts:Nicaragua" }, { "@id": "bts:Niger" }, { "@id": "bts:Nigeria" }, { "@id": "bts:Niue" }, { "@id": "bts:NorthKorea" }, { "@id": "bts:NorthMacedonia" }, { "@id": "bts:NorthernMarianaIslands" }, { "@id": "bts:Norway" }, { "@id": "bts:Oman" }, { "@id": "bts:Pakistan" }, { "@id": "bts:Palau" }, { "@id": "bts:Panama" }, { "@id": "bts:PapuaNewGuinea" }, { "@id": "bts:Paraguay" }, { "@id": "bts:Peru" }, { "@id": "bts:Philippines" }, { "@id": "bts:Poland" }, { "@id": "bts:Portugal" }, { "@id": "bts:PuertoRico" }, { "@id": "bts:Qatar" }, { "@id": "bts:Reunion" }, { "@id": "bts:Romania" }, { "@id": "bts:Russia" }, { "@id": "bts:Rwanda" }, { "@id": "bts:SaintHelenaAscensionandTristandaCunha" }, { "@id": "bts:SaintKittsandNevis" }, { "@id": "bts:SaintLucia" }, { "@id": "bts:SaintPierreandMiquelon" }, { "@id": "bts:SaintVincentandtheGrenadines" }, { "@id": "bts:Samoa" }, { "@id": "bts:SanMarino" }, { "@id": "bts:SaoTomeandPrincipe" }, { "@id": "bts:SaudiArabia" }, { "@id": "bts:Senegal" }, { "@id": "bts:Serbia" }, { "@id": "bts:Seychelles" }, { "@id": "bts:SierraLeone" }, { "@id": "bts:Singapore" }, { "@id": "bts:Slovakia" }, { "@id": "bts:Slovenia" }, { "@id": "bts:SolomonIslands" }, { "@id": "bts:Somalia" }, { "@id": "bts:SouthAfrica" }, { "@id": "bts:SouthKorea" }, { "@id": "bts:SouthSudan" }, { "@id": "bts:Spain" }, { "@id": "bts:SriLanka" }, { "@id": "bts:StateofPalestine" }, { "@id": "bts:Sudan" }, { "@id": "bts:Suriname" }, { "@id": "bts:Svalbard&JanMayenIslands" }, { "@id": "bts:Sweden" }, { "@id": "bts:Switzerland" }, { "@id": "bts:Syria" }, { "@id": "bts:Taiwan" }, { "@id": "bts:Tajikistan" }, { "@id": "bts:Tanzania" }, { "@id": "bts:Thailand" }, { "@id": "bts:Timor-Leste" }, { "@id": "bts:Togo" }, { "@id": "bts:Tokelau" }, { "@id": "bts:Tonga" }, { "@id": "bts:TrinidadandTobago" }, { "@id": "bts:Tunisia" }, { "@id": "bts:Turkey" }, { "@id": "bts:Turkmenistan" }, { "@id": "bts:Tuvalu" }, { "@id": "bts:Uganda" }, { "@id": "bts:Ukraine" }, { "@id": "bts:UnitedArabEmirates" }, { "@id": "bts:UnitedKingdom" }, { "@id": "bts:UnitedStates" }, { "@id": "bts:Uruguay" }, { "@id": "bts:Uzbekistan" }, { "@id": "bts:Vanuatu" }, { "@id": "bts:Venezuela" }, { "@id": "bts:Vietnam" }, { "@id": "bts:VirginIslandsBritish" }, { "@id": "bts:VirginIslandsU.S." }, { "@id": "bts:WallisandFutuna" }, { "@id": "bts:WesternSahara" }, { "@id": "bts:Yemen" }, { "@id": "bts:Zambia" }, { "@id": "bts:Zimbabwe" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Country of Birth", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MedicallyUnderservedArea", "@type": "rdfs:Class", "rdfs:comment": "Areas or populations designated by HRSA as having too few primary care providers, high infant mortality, high poverty or a high elderly population: Use patient zip code to find the county the patient lives in by going to https://www.unitedstateszipcodes.org/ - enter the zip code in the main text field and use the associated county on the right side of the result field. Go to data.hrsa.gov website and select \"Query Data\". Pick the Medically Underserved Areas/Populations (MUA/P) data source in the step 1 menu and select \"View Data\". Enter the name of the county (_______ county) in the first \"Service Area\" column, adding the state in the 5th column may help direct you to the data. If the designation type in the third column is \"medically underserved area\" enter \"Yes\" as the value. If the county generates a \"No data available in table\" enter \"No\" as the value. A value of \"Unknown\" indicates that sufficient data was not available to look up the value. If value is yes, complete the Medically_underserved_score data element.", "rdfs:label": "MedicallyUnderservedArea", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:MedicallyUnderservedArea-Yes" }, { "@id": "bts:MedicallyUnderservedArea-No" }, { "@id": "bts:MedicallyUnderservedArea-Unknown" } ], "sms:displayName": "Medically Underserved Area", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RuralvsUrban", "@type": "rdfs:Class", "rdfs:comment": "Density of population in the county of residence, based on census data (updated last on 4/28/20). Use patient zip code to find the county the patient lives in by going to https://www.unitedstateszipcodes.org/. Enter the zip code in the main text field and use the associated county on the right side of the result field. Go to https://www2.census.gov/programs-surveys/acs/data/covid_19/Data_Profiles_for_HHS/050-County_By_State/. Select the dp02_XX.csv file where XX = the two letter abbreviation for the appropriate state. On row 166 find the total population for the appropriate county. If the total population is <2,500 enter a value of \"Rural Population\"; if 2,500 - 50,000 enter a value of \"Urban Cluster\"; or if >50,000 enter \"Urban Population\"", "rdfs:label": "RuralvsUrban", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:UrbanPopulation(population>50000)" }, { "@id": "bts:UrbanCluster(population2500-50000)" }, { "@id": "bts:RuralPopulation(population<2500)" } ], "sms:displayName": "Rural vs Urban", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CancerIncidence", "@type": "rdfs:Class", "rdfs:comment": "Incidence of specific cancer type in a defined area (a number between 0 and 100). The rate of incident cases per population of 100,000 persons of a specific type of cancer as designated in the \"primary_diagnosis\" data element in the county where the patient resides, using the most recent 2013-2017 NCI Cancer Atlas derived data. Use patient zip code to find the county the patient lives in by going to https://www.unitedstateszipcodes.org/. Enter the zip code in the main text field and use the asociated county on the right side of the result field. On the https://gis.cancer.gov/canceratlas/tableview/ website, choose \"Incidence\" from the Topic dropdown menu, state of interest from the Area menu, \"All Races\" from the Race menu, and the cancer type (\"Both Sexes\" when possible) from the Statistic menu. Find the county of interest and enter the numeric Age-Adjusted Rate per 100,000 as the value.", "rdfs:label": "CancerIncidence", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Cancer Incidence", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CancerIncidenceLocation", "@type": "rdfs:Class", "rdfs:comment": "The county and state in which the patient lives and to which the cancer_incidence data correlates. Record as \"County, State\" as they appear in the incidence box from which the cancer_incidence data is obtained in the https://gis.cancer.gov/canceratlas/tableview/ website", "rdfs:label": "CancerIncidenceLocation", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Cancer Incidence Location", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SRRSClinicalDataTier2", "@type": "rdfs:Class", "rdfs:comment": "Cancer related clinical data specific to SRRS", "rdfs:label": "SRRSClinicalDataTier2", "rdfs:subClassOf": [ { "@id": "bts:Patient" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "SRRS Clinical Data Tier 2", "sms:required": "sms:false", "sms:requiresDependency": [ { "@id": "bts:Component" }, { "@id": "bts:HTANParticipantID" }, { "@id": "bts:TimepointLabel" }, { "@id": "bts:StartDaysfromIndex" }, { "@id": "bts:StopDaysfromIndex" }, { "@id": "bts:EducationLevel" }, { "@id": "bts:CountryofBirth" }, { "@id": "bts:MedicallyUnderservedArea" }, { "@id": "bts:RuralvsUrban" }, { "@id": "bts:CancerIncidence" }, { "@id": "bts:CancerIncidenceLocation" }, { "@id": "bts:Ethnicity" }, { "@id": "bts:Gender" }, { "@id": "bts:Race" }, { "@id": "bts:VitalStatus" }, { "@id": "bts:AgeatDiagnosis" }, { "@id": "bts:DaystoLastFollowup" }, { "@id": "bts:DaystoLastKnownDiseaseStatus" }, { "@id": "bts:DaystoRecurrence" }, { "@id": "bts:LastKnownDiseaseStatus" }, { "@id": "bts:Morphology" }, { "@id": "bts:PrimaryDiagnosis" }, { "@id": "bts:ProgressionorRecurrence" }, { "@id": "bts:SiteofResectionorBiopsy" }, { "@id": "bts:TissueorOrganofOrigin" }, { "@id": "bts:NCIAtlasCancerSite" }, { "@id": "bts:TumorGrade" }, { "@id": "bts:PackYearsSmoked" }, { "@id": "bts:YearsSmoked" }, { "@id": "bts:DaystoFollowUp" }, { "@id": "bts:GeneSymbol" }, { "@id": "bts:MolecularAnalysisMethod" }, { "@id": "bts:TestResult" }, { "@id": "bts:TreatmentType" }, { "@id": "bts:TumorLargestDimensionDiameter" } ], "sms:validationRules": [] }, { "@id": "bts:Ethnicity", "@type": "rdfs:Class", "rdfs:comment": "An individual's self-described social and cultural grouping, specifically whether an individual describes themselves as Hispanic or Latino. The provided values are based on the categories defined by the U.S. Office of Management and Business and used by the U.S. Census Bureau.", "rdfs:label": "Ethnicity", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Hispanicorlatino" }, { "@id": "bts:Nothispanicorlatino" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" }, { "@id": "bts:Notallowedtocollect" } ], "sms:displayName": "Ethnicity", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:Gender", "@type": "rdfs:Class", "rdfs:comment": "Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. [Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.]", "rdfs:label": "Gender", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Female" }, { "@id": "bts:Male" }, { "@id": "bts:Unknown" }, { "@id": "bts:Unspecified" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Gender", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:Race", "@type": "rdfs:Class", "rdfs:comment": "An arbitrary classification of a taxonomic group that is a division of a species. It usually arises as a consequence of geographical isolation withina a species and is characterized by shared heredity, physical attributes and behavior, and in the case of humans, by common history, nationality, or geographic distribution.", "rdfs:label": "Race", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:White" }, { "@id": "bts:Americanindianoralaskanative" }, { "@id": "bts:Blackorafricanamerican" }, { "@id": "bts:Asian" }, { "@id": "bts:Nativehawaiianorotherpacificislander" }, { "@id": "bts:Other" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" }, { "@id": "bts:Notallowedtocollect" } ], "sms:displayName": "Race", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:VitalStatus", "@type": "rdfs:Class", "rdfs:comment": "The survival state of the person registered on the protocol.", "rdfs:label": "VitalStatus", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Alive" }, { "@id": "bts:Dead" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Vital Status", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:AgeatDiagnosis", "@type": "rdfs:Class", "rdfs:comment": "Age at the time of diagnosis expressed in number of days since birth.", "rdfs:label": "AgeatDiagnosis", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Age at Diagnosis", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:DaystoLastFollowup", "@type": "rdfs:Class", "rdfs:comment": "Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days. If not applicable please enter 'Not Applicable'", "rdfs:label": "DaystoLastFollowup", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Days to Last Follow up", "sms:required": "sms:true", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:DaystoLastKnownDiseaseStatus", "@type": "rdfs:Class", "rdfs:comment": "Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days. If not applicable please enter 'Not Applicable'", "rdfs:label": "DaystoLastKnownDiseaseStatus", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Days to Last Known Disease Status", "sms:required": "sms:true", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:DaystoRecurrence", "@type": "rdfs:Class", "rdfs:comment": "Number of days between the date used for index and the date the patient's disease recurred. If not applicable please enter 'Not Applicable'", "rdfs:label": "DaystoRecurrence", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Days to Recurrence", "sms:required": "sms:true", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:LastKnownDiseaseStatus", "@type": "rdfs:Class", "rdfs:comment": "Text term that describes the last known state or condition of an individual's neoplasm.", "rdfs:label": "LastKnownDiseaseStatus", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Distantmetrecurrence/progression" }, { "@id": "bts:Loco-regionalrecurrence/progression" }, { "@id": "bts:Biochemicalevidenceofdiseasewithoutstructuralcorrelate" }, { "@id": "bts:Tumorfree" }, { "@id": "bts:Unknowntumorstatus" }, { "@id": "bts:Withtumor" }, { "@id": "bts:NotReported" }, { "@id": "bts:NotAllowedToCollect" }, { "@id": "bts:NotApplicable" } ], "sms:displayName": "Last Known Disease Status", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:Morphology", "@type": "rdfs:Class", "rdfs:comment": "The third edition of the International Classification of Diseases for Oncology, published in 2000 used principally in tumor and cancer registries for coding the site (topography) and the histology (morphology) of neoplasms. The study of the structure of the cells and their arrangement to constitute tissues and, finally, the association among these to form organs. In pathology, the microscopic process of identifying normal and abnormal morphologic characteristics in tissues, by employing various cytochemical and immunocytochemical stains. 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If the test result was a numeric value see test_value. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. 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"bts:Immunotherapy(IncludingVaccines)" }, { "@id": "bts:IsolatedLimbPerfusion(ILP)" }, { "@id": "bts:OrganTransplantation" }, { "@id": "bts:Other" }, { "@id": "bts:PharmaceuticalTherapyNOS" }, { "@id": "bts:Pleurodesis" }, { "@id": "bts:Radiation2DConventional" }, { "@id": "bts:Radiation3DConformal" }, { "@id": "bts:RadiationCombination" }, { "@id": "bts:RadiationCyberknife" }, { "@id": "bts:RadiationExternalBeam" }, { "@id": "bts:RadiationImplants" }, { "@id": "bts:RadiationIntensity-ModulatedRadiotherapy" }, { "@id": "bts:RadiationInternal" }, { "@id": "bts:RadiationProtonBeam" }, { "@id": "bts:RadiationRadioisotope" }, { "@id": "bts:RadiationStereotactic/GammaKnife/SRS" }, { "@id": "bts:RadiationSystemic" }, { "@id": "bts:RadiationTherapyNOS" }, { "@id": "bts:RadioactiveIodineTherapy" }, { "@id": "bts:Radioembolization" }, { "@id": "bts:RadiosensitizingAgent" }, { "@id": "bts:StemCellTreatment" }, { "@id": "bts:StemCellTransplantationAutologous" }, { "@id": "bts:StemCellTransplantationDoubleAutologous" }, { "@id": "bts:StemCellTransplantationAllogeneic" }, { "@id": "bts:StemCellTransplantationNon-Myeloablative" }, { "@id": "bts:StemCellTransplantationSyngenic" }, { "@id": "bts:StemCellTransplantationHaploidentical" }, { "@id": "bts:StemCellTransplantationNOS" }, { "@id": "bts:StereotacticRadiosurgery" }, { "@id": "bts:SteroidTherapy" }, { "@id": "bts:Surgery" }, { "@id": "bts:TargetedMolecularTherapy" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Treatment Type", "sms:required": "sms:false", "sms:validationRules": [ "list like" ] }, { "@id": "bts:TumorLargestDimensionDiameter", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the maximum diameter or dimension of the primary tumor, measured in centimeters.", "rdfs:label": "TumorLargestDimensionDiameter", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Tumor Largest Dimension Diameter", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LungCancerTier3", "@type": "rdfs:Class", "rdfs:comment": "Lung cancer specific attributes in Clinical Data Tier 3", "rdfs:label": "LungCancerTier3", "rdfs:subClassOf": [ { "@id": "bts:Patient" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Lung Cancer Tier 3", "sms:required": "sms:false", "sms:requiresDependency": [ { "@id": "bts:Component" }, { "@id": "bts:HTANParticipantID" }, { "@id": "bts:TimepointLabel" }, { "@id": "bts:StartDaysfromIndex" }, { "@id": "bts:StopDaysfromIndex" }, { "@id": "bts:LungCancerDetectionMethodType" }, { "@id": "bts:LungCancerParticipantProcedureHistory" }, { "@id": "bts:LungAdjacentHistologyType" }, { "@id": "bts:LungTumorLocationAnatomicSite" }, { "@id": "bts:LungTumorLobeBronchialLocation" }, { "@id": "bts:CurrentLungCancerSymptoms" }, { "@id": "bts:LungTopography" }, { "@id": 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"rdfs:label": "LungCancerParticipantProcedureHistory", "rdfs:subClassOf": [ { "@id": "bts:LungCancerTier3" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:LobectomyBilateral" }, { "@id": "bts:LobectomyLeft" }, { "@id": "bts:LobectomyRight" }, { "@id": "bts:LungWedgeResectionBilateral" }, { "@id": "bts:LungWedgeResectionLeft" }, { "@id": "bts:LungWedgeResectionMultiple" }, { "@id": "bts:LungWedgeResectionRight" }, { "@id": "bts:PneumonectomyLeft" }, { "@id": "bts:PneumonectomyRight" }, { "@id": "bts:Endobronchialbiopsy" }, { "@id": "bts:Mediastinoscopy" }, { "@id": "bts:VATSSclerosis" }, { "@id": "bts:Brainresection" }, { "@id": "bts:Segmentectomy" }, { "@id": "bts:Unknown" }, { "@id": "bts:Other" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Lung Cancer Participant Procedure History", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LungAdjacentHistologyType", "@type": "rdfs:Class", "rdfs:comment": "The type of morphologic characteristics observed by microscope in the tissue next to a benign or malignant tissue growth", "rdfs:label": "LungAdjacentHistologyType", "rdfs:subClassOf": [ { "@id": "bts:LungCancerTier3" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Lungadenocarcinoma" }, { "@id": "bts:Adenosquamouscarcinoma" }, { "@id": "bts:Carcinoidtumorandlungatypicalcarcinoidtumor" }, { "@id": "bts:Lungadenocarcinomainsitu" }, { "@id": "bts:Largecelllungcarcinoma" }, { "@id": "bts:Largecellneuroendocrinecarcinoma" }, { "@id": "bts:Lunglymphoepithelioma-likecarcinoma" }, { "@id": "bts:Bronchioalveolarcarcinoma" }, { "@id": "bts:ThoracicNUTcarcinoma" }, { "@id": "bts:Sarcomatoidcarcinoma" }, { "@id": "bts:Smallcelllungcarcinoma" }, { "@id": "bts:Squamouscelllungcarcinoma" }, { "@id": "bts:Lungsquamouscellcarcinomainsitu" }, { "@id": "bts:Other" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Lung Adjacent Histology Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LungTumorLocationAnatomicSite", "@type": "rdfs:Class", "rdfs:comment": "Anatomic location of the tumor inside the lung", "rdfs:label": "LungTumorLocationAnatomicSite", "rdfs:subClassOf": [ { "@id": "bts:LungCancerTier3" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Maincarina" }, { "@id": "bts:Left" }, { "@id": "bts:Right" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Lung Tumor Location Anatomic Site", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LungTumorLobeBronchialLocation", "@type": "rdfs:Class", "rdfs:comment": "Anatomic lobe and bronchial location of the tumor inside the lung", "rdfs:label": "LungTumorLobeBronchialLocation", "rdfs:subClassOf": [ { "@id": "bts:LungCancerTier3" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Upperlobe" }, { "@id": "bts:Middlelobe" }, { "@id": "bts:Lowerlobe" }, { "@id": "bts:Stump" }, { "@id": "bts:Bronchus" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Lung Tumor Lobe Bronchial Location", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CurrentLungCancerSymptoms", "@type": "rdfs:Class", "rdfs:comment": "Reported lung cancer related symptoms person is currently experiencing", "rdfs:label": "CurrentLungCancerSymptoms", "rdfs:subClassOf": [ { "@id": "bts:LungCancerTier3" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Asbestosis" }, { "@id": "bts:Productivecough" }, { "@id": "bts:Non-productivecough" }, { "@id": "bts:Wheezing" }, { "@id": "bts:Rhonci" }, { "@id": "bts:Crackles" }, { "@id": "bts:Hemoptysis" }, { "@id": "bts:Dyspnea" }, { "@id": "bts:Unexplainedweightloss" }, { "@id": "bts:Unexplainedlossofenergy/fatigue" }, 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}, { "@id": "bts:RLNOS(Rightlungnototherwisespecified)" }, { "@id": "bts:RB1/2-Carinabetweenapicalandposteriorsegmentsrightupperlobe(CarinabetweenRB1orificeandRB2orifice)" }, { "@id": "bts:RB6A/B-CarinabetweenapicalandlateralsubsegmentssuperiorsegmentRLL" }, { "@id": "bts:RB6A/C-CarinabetweenapicalandmedialsubsegmentssuperiorsegmentRLL" }, { "@id": "bts:RB6B/C-CarinabetweenmedialandlateralsubsegmentssuperiorsegmentRLL" }, { "@id": "bts:RB7A/B-CarinabetweenmedialandlateralsubsegmentsmedialbasalsegmentRLL" }, { "@id": "bts:RB8/9-CarinabetweenanteriorandlateralsegmentsRLL(CarinabetweenRB8orificeandRB9orifice)" }, { "@id": "bts:RB8A/B-CarinabetweenmedialandlateralsubsegmentsanteriorsegmentRLL" }, { "@id": "bts:RB9/10-CarinabetweenlateralandposteriorsegmentsRLL" }, { "@id": "bts:RB9A/B-CarinabetweenmedialandlateralsubsegmentslateralsegmentRLL" }, { "@id": "bts:RB10A/B-CarinabetweenmedialandlateralsubsegmentsposteriorsegmentRLL" }, { "@id": "bts:RB10A/C-CarinabetweenmedialandapicalsubsegmentsposteriorsegmentRLL" }, { "@id": "bts:RB1A/B-CarinabetweenmedialandlateralsubsegmentsapicalsegmentRUL" }, { "@id": "bts:RB10B/C-CarinabetweenmedialandlateralsubsegmentsposteriorsegmentRLL" }, { "@id": "bts:RB6-CarinaofsuperiorsegmentRLL(CarinabetweenRB6orificeandlowerportionofRLLorifice)" }, { "@id": "bts:RB6orificeAirwaywallbetweenRB6andRB6A/B/Ccarinae" }, { "@id": "bts:BronchusIntermediusBronchus(airwaywall)betweenrightupperandrightmiddlelobes" }, { "@id": "bts:RB1/3-CarinabetweenapicalandanteriorsegmentsRUL(CarinabetweenRB1orificeandRB3orifice)" }, { "@id": "bts:RB2/3-CarinabetweenanteriorandposteriorsegmentsRUL(CarinabetweenRB2orificeandRB3orifice)" }, { "@id": "bts:RB2A/B-Carinabetweenthemedialandlateralsubsegmentsoftheposteriorsegment(RUL)" }, { "@id": "bts:RB3A/B-CarinabetweenthemedialandlateralsubsegmentsoftheanteriorsegmentRUL" }, { "@id": "bts:RB4/5-Carinabetweenthelateralandmedialsegmentsrightmiddlelobe(CarinabetweenRB4orificeandRB5orifice)" }, { "@id": "bts:RB4A/B-Carinabetweenthemedialandlateralsubsegmentsofthelateralsegmentoftherightmiddlelobe" }, { "@id": "bts:RB5A/B-Carinabetweenthemedialandlateralsubsegmentsofthemedialsegmentoftherightmiddlelobe" }, { "@id": "bts:RULCarinaebetweenRULorificeandbronchusintermedius" }, { "@id": "bts:RULorificeAirwaywallbetweenRULandRB1/RB2/RB3" }, { "@id": "bts:RB1orificeApicalsegment-rightupperlobe(airwaywallbetweenRB1andRB1A/Bcarinae)" }, { "@id": "bts:RB2orificePosteriorsegment-rightupperlobe(airwaywallbetweenRB2andRB2A/Bcarinae)" }, { "@id": "bts:RB3orificeAnteriorsegment-rightupperlobe(airwaywallbetweenRB3andRB3A/Bcarinae)" }, { "@id": "bts:RML-CarinabetweenRMLorificeandRLLorifice" }, { "@id": "bts:RMLorificeAirwaywallbetweenRMLandRB4/5" }, { "@id": "bts:RB4orificeLateralsegmentrightmiddlelobe(airwaywallbetweenRB4andRB4A/Bcarinae)" }, { "@id": 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"bts:Bahamas" }, { "@id": "bts:Bahrain" }, { "@id": "bts:Bangladesh" }, { "@id": "bts:Barbados" }, { "@id": "bts:Belarus" }, { "@id": "bts:Belgium" }, { "@id": "bts:Belize" }, { "@id": "bts:Benin" }, { "@id": "bts:Bermuda" }, { "@id": "bts:Bhutan" }, { "@id": "bts:Bolivia" }, { "@id": "bts:BosniaandHerzegovina" }, { "@id": "bts:Botswana" }, { "@id": "bts:Brazil" }, { "@id": "bts:Brunei" }, { "@id": "bts:Bulgaria" }, { "@id": "bts:BurkinaFaso" }, { "@id": "bts:Burundi" }, { "@id": "bts:Cambodia" }, { "@id": "bts:Cameroon" }, { "@id": "bts:Canada" }, { "@id": "bts:CapeVerde" }, { "@id": "bts:CaymanIslands" }, { "@id": "bts:CentralAfricanRepublic" }, { "@id": "bts:Chad" }, { "@id": "bts:Chile" }, { "@id": "bts:China" }, { "@id": "bts:Colombia" }, { "@id": "bts:Comoros" }, { "@id": "bts:Congo" }, { "@id": "bts:CookIslands" }, { "@id": "bts:CostaRica" }, { "@id": "bts:Coted'Ivoire" }, { "@id": "bts:Croatia" }, { "@id": "bts:Cuba" }, { "@id": "bts:Curacao" }, { "@id": "bts:Cyprus" }, { 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"@id": "bts:Guernsey" }, { "@id": "bts:Guinea" }, { "@id": "bts:Guinea-Bissau" }, { "@id": "bts:Guyana" }, { "@id": "bts:Haiti" }, { "@id": "bts:HolySee" }, { "@id": "bts:Honduras" }, { "@id": "bts:HongKong" }, { "@id": "bts:Hungary" }, { "@id": "bts:Iceland" }, { "@id": "bts:India" }, { "@id": "bts:Indonesia" }, { "@id": "bts:Iran" }, { "@id": "bts:Iraq" }, { "@id": "bts:Ireland" }, { "@id": "bts:IsleofMan" }, { "@id": "bts:Israel" }, { "@id": "bts:Italy" }, { "@id": "bts:Jamaica" }, { "@id": "bts:Japan" }, { "@id": "bts:Jersey" }, { "@id": "bts:Jordan" }, { "@id": "bts:Kazakhstan" }, { "@id": "bts:Kenya" }, { "@id": "bts:Kiribati" }, { "@id": "bts:Kosovo" }, { "@id": "bts:Kuwait" }, { "@id": "bts:Kyrgyzstan" }, { "@id": "bts:Laos" }, { "@id": "bts:Latvia" }, { "@id": "bts:Lebanon" }, { "@id": "bts:Lesotho" }, { "@id": "bts:Liberia" }, { "@id": "bts:Libya" }, { "@id": "bts:Liechtenstein" }, { "@id": "bts:Lithuania" }, { "@id": "bts:Luxembourg" }, { "@id": "bts:Macau" }, { "@id": "bts:Madagascar" }, { "@id": "bts:Malawi" }, { "@id": "bts:Malaysia" }, { "@id": "bts:Maldives" }, { "@id": "bts:Mali" }, { "@id": "bts:Malta" }, { "@id": "bts:MarshallIslands" }, { "@id": "bts:Martinique" }, { "@id": "bts:Mauritania" }, { "@id": "bts:Mauritius" }, { "@id": "bts:Mayotte" }, { "@id": "bts:Mexico" }, { "@id": "bts:Moldova" }, { "@id": "bts:Monaco" }, { "@id": "bts:Mongolia" }, { "@id": "bts:Montenegro" }, { "@id": "bts:Montserrat" }, { "@id": "bts:Morocco" }, { "@id": "bts:Mozambique" }, { "@id": "bts:Myanmar" }, { "@id": "bts:Namibia" }, { "@id": "bts:Nauru" }, { "@id": "bts:Nepal" }, { "@id": "bts:Netherlands" }, { "@id": "bts:NewCaledonia" }, { "@id": "bts:NewZealand" }, { "@id": "bts:Nicaragua" }, { "@id": "bts:Niger" }, { "@id": "bts:Nigeria" }, { "@id": "bts:Niue" }, { "@id": "bts:NorthKorea" }, { "@id": "bts:NorthMacedonia" }, { "@id": "bts:NorthernMarianaIslands" }, { "@id": "bts:Norway" }, { "@id": "bts:Oman" }, { "@id": "bts:Pakistan" }, { "@id": "bts:Palau" }, { "@id": "bts:Panama" }, { "@id": "bts:PapuaNewGuinea" }, { "@id": "bts:Paraguay" }, { "@id": "bts:Peru" }, { "@id": "bts:Philippines" }, { "@id": "bts:Poland" }, { "@id": "bts:Portugal" }, { "@id": "bts:PuertoRico" }, { "@id": "bts:Qatar" }, { "@id": "bts:Reunion" }, { "@id": "bts:Romania" }, { "@id": "bts:Russia" }, { "@id": "bts:Rwanda" }, { "@id": "bts:SaintHelenaAscensionandTristandaCunha" }, { "@id": "bts:SaintKittsandNevis" }, { "@id": "bts:SaintLucia" }, { "@id": "bts:SaintPierreandMiquelon" }, { "@id": "bts:SaintVincentandtheGrenadines" }, { "@id": "bts:Samoa" }, { "@id": "bts:SanMarino" }, { "@id": "bts:SaoTomeandPrincipe" }, { "@id": "bts:SaudiArabia" }, { "@id": "bts:Senegal" }, { "@id": "bts:Serbia" }, { "@id": "bts:Seychelles" }, { "@id": "bts:SierraLeone" }, { "@id": "bts:Singapore" }, { "@id": "bts:Slovakia" }, { "@id": "bts:Slovenia" }, { "@id": "bts:SolomonIslands" }, { "@id": "bts:Somalia" }, { "@id": "bts:SouthAfrica" }, { "@id": "bts:SouthKorea" }, { "@id": "bts:SouthSudan" }, { "@id": "bts:Spain" }, { "@id": "bts:SriLanka" }, { "@id": "bts:StateofPalestine" }, { "@id": "bts:Sudan" }, { "@id": "bts:Suriname" }, { "@id": "bts:Svalbard&JanMayenIslands" }, { "@id": "bts:Sweden" }, { "@id": "bts:Switzerland" }, { "@id": "bts:Syria" }, { "@id": "bts:Taiwan" }, { "@id": "bts:Tajikistan" }, { "@id": "bts:Tanzania" }, { "@id": "bts:Thailand" }, { "@id": "bts:Timor-Leste" }, { "@id": "bts:Togo" }, { "@id": "bts:Tokelau" }, { "@id": "bts:Tonga" }, { "@id": "bts:TrinidadandTobago" }, { "@id": "bts:Tunisia" }, { "@id": "bts:Turkey" }, { "@id": "bts:Turkmenistan" }, { "@id": "bts:Tuvalu" }, { "@id": "bts:Uganda" }, { "@id": "bts:Ukraine" }, { "@id": "bts:UnitedArabEmirates" }, { "@id": "bts:UnitedKingdom" }, { "@id": "bts:UnitedStates" }, { "@id": "bts:Uruguay" }, { "@id": "bts:Uzbekistan" }, { "@id": "bts:Vanuatu" }, { "@id": "bts:Venezuela" }, { "@id": "bts:Vietnam" }, { "@id": "bts:VirginIslandsBritish" }, { "@id": "bts:VirginIslandsU.S." }, { "@id": "bts:WallisandFutuna" }, { "@id": "bts:WesternSahara" }, { "@id": "bts:Yemen" }, { "@id": "bts:Zambia" }, { "@id": "bts:Zimbabwe" } ], "sms:displayName": "Country of Residence", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AgeIsObfuscated", "@type": "rdfs:Class", "rdfs:comment": "The age of the patient has been modified for compliance reasons. The actual age differs from what is reported. Other date intervals for this patient may also be modified.", "rdfs:label": "AgeIsObfuscated", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:True" }, { "@id": "bts:False" } ], "sms:displayName": "Age Is Obfuscated", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:YearOfBirth", "@type": "rdfs:Class", "rdfs:comment": "Numeric value to represent the calendar year in which an individual was born.", "rdfs:label": "YearOfBirth", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Year Of Birth", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:OccupationDurationYears", "@type": "rdfs:Class", "rdfs:comment": "The number of years a patient worked in a specific occupation.", "rdfs:label": "OccupationDurationYears", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Occupation Duration Years", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:PrematureAtBirth", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether the patient was premature (less than 37 weeks gestation) at birth.", "rdfs:label": "PrematureAtBirth", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Premature At Birth", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:WeeksGestationatBirth", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the number of weeks starting from the approximate date of the biological mother's last menstrual period and ending with the birth of the patient.", "rdfs:label": "WeeksGestationatBirth", "rdfs:subClassOf": [ { "@id": "bts:Demographics" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Weeks Gestation at Birth", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RelativewithCancerHistory", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether any of the patient's relatives have a history of cancer.", "rdfs:label": "RelativewithCancerHistory", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes-CancerHistoryRelative" }, { "@id": "bts:None" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Relative with Cancer History", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SmokingExposure", "@type": "rdfs:Class", "rdfs:comment": "Indicate if individual has smoking exposure", "rdfs:label": "SmokingExposure", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes-SmokingExposure" }, { "@id": "bts:No-SmokingExposure" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Smoking Exposure", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:AlcoholExposure", "@type": "rdfs:Class", "rdfs:comment": "Indicate if individual has alcohol exposure", "rdfs:label": "AlcoholExposure", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes-AlcoholExposure" }, { "@id": "bts:No-AlcoholExposure" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Alcohol Exposure", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:AsbestosExposure", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether the patient was exposed to asbestos.", "rdfs:label": "AsbestosExposure", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Asbestos Exposure", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CoalDustExposure", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether a patient was exposed to fine powder derived by the crushing of coal.", "rdfs:label": "CoalDustExposure", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Coal Dust Exposure", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:EnvironmentalTobaccoSmokeExposure", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether a patient was exposed to smoke that is emitted from burning tobacco, including cigarettes, pipes, and cigars. This includes tobacco smoke exhaled by smokers.", "rdfs:label": "EnvironmentalTobaccoSmokeExposure", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Environmental Tobacco Smoke Exposure", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RadonExposure", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether the patient was exposed to radon.", "rdfs:label": "RadonExposure", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Radon Exposure", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RespirableCrystallineSilicaExposure", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether a patient was exposured to respirable crystalline silica, a widespread, naturally occurring, crystalline metal oxide that consists of different forms including quartz, cristobalite, tridymite, tripoli, ganister, chert and novaculite.", "rdfs:label": "RespirableCrystallineSilicaExposure", "rdfs:subClassOf": [ { "@id": "bts:Exposure" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Respirable Crystalline Silica Exposure", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AdverseEvent", "@type": "rdfs:Class", "rdfs:comment": "Text that represents the Common Terminology Criteria for Adverse Events low level term name for an adverse event.", "rdfs:label": "AdverseEvent", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:AbdominalDistension" }, { "@id": "bts:AbdominalInfection" }, { "@id": "bts:AbdominalPain" }, { "@id": "bts:AbdominalSoftTissueNecrosis" }, { "@id": "bts:AbducensNerveDisorder" }, { "@id": "bts:AccessoryNerveDisorder" }, { "@id": "bts:Acidosis" }, { "@id": "bts:AcousticNerveDisorderNOS" }, { "@id": "bts:ActivatedPartialThromboplastinTimeProlonged" }, { "@id": "bts:AcuteCoronarySyndrome" }, { "@id": "bts:AcuteKidneyInjury" }, { "@id": "bts:AdrenalInsufficiency" }, { "@id": "bts:AdultRespiratoryDistressSyndrome" }, { "@id": "bts:Agitation" }, { "@id": "bts:Akathisia" }, { "@id": "bts:AlanineAminotransferaseIncreased" }, { "@id": "bts:AlcoholIntolerance" }, { "@id": "bts:AlkalinePhosphataseIncreased" }, { "@id": "bts:Alkalosis" }, { "@id": "bts:AllergicReaction" }, { "@id": "bts:AllergicRhinitis" }, { "@id": "bts:Alopecia" }, { "@id": "bts:Amnesia" }, { "@id": "bts:AnalFistula" }, { "@id": "bts:AnalHemorrhage" }, { "@id": "bts:AnalMucositis" }, { "@id": "bts:AnalNecrosis" }, { "@id": "bts:AnalPain" }, { "@id": "bts:AnalStenosis" }, { "@id": "bts:AnalUlcer" }, { "@id": "bts:Anaphylaxis" }, { "@id": "bts:Anemia" }, { "@id": "bts:AnkleFracture" }, { "@id": "bts:AnorectalInfection" }, { "@id": "bts:Anorexia" }, { "@id": "bts:Anorgasmia" }, { "@id": "bts:Anxiety" }, { "@id": "bts:AorticInjury" }, { "@id": "bts:AorticValveDisease" }, { "@id": "bts:Aphonia" }, { "@id": "bts:Apnea" }, { "@id": "bts:Appendicitis" }, { "@id": "bts:AppendicitisPerforated" }, { "@id": "bts:Arachnoiditis" }, { "@id": "bts:ArterialInjury" }, { "@id": "bts:ArteritisInfective" }, { "@id": "bts:Arthralgia" }, { "@id": "bts:Arthritis" }, { "@id": "bts:Ascites" }, { "@id": "bts:AspartateAminotransferaseIncreased" }, { "@id": "bts:Aspiration" }, { "@id": "bts:Asystole" }, { "@id": "bts:Ataxia" }, { "@id": "bts:Atelectasis" }, { "@id": "bts:AtrialFibrillation" }, { "@id": "bts:AtrialFlutter" }, { "@id": "bts:AtrioventricularBlockComplete" }, { "@id": "bts:AtrioventricularBlockFirstDegree" }, { "@id": "bts:AutoimmuneDisorder" }, { "@id": "bts:AvascularNecrosis" }, { "@id": "bts:Azoospermia" }, { "@id": "bts:BackPain" }, { "@id": "bts:BileDuctStenosis" }, { "@id": "bts:BiliaryAnastomoticLeak" }, { "@id": "bts:BiliaryFistula" }, { "@id": "bts:BiliaryTractInfection" }, { "@id": "bts:BladderAnastomoticLeak" }, { "@id": "bts:BladderInfection" }, { "@id": "bts:BladderPerforation" }, { "@id": "bts:BladderSpasm" }, { "@id": "bts:Bloating" }, { "@id": "bts:BloodandLymphaticSystemDisordersOther" }, { "@id": "bts:BloodAntidiureticHormoneAbnormal" }, { "@id": "bts:BloodBilirubinIncreased" }, { "@id": "bts:BloodCorticotrophinDecreased" }, { "@id": "bts:BloodGonadotrophinAbnormal" }, { "@id": "bts:BloodProlactinAbnormal" }, { "@id": "bts:BlurredVision" }, { "@id": "bts:BodyOdor" }, { "@id": "bts:BoneInfection" }, { "@id": "bts:BoneMarrowHypocellular" }, { "@id": "bts:BonePain" }, { "@id": "bts:BrachialPlexopathy" }, { "@id": "bts:BreastAtrophy" }, { "@id": "bts:BreastInfection" }, { "@id": "bts:BreastPain" }, { "@id": "bts:BronchialFistula" }, { "@id": "bts:BronchialInfection" }, { "@id": "bts:BronchialObstruction" }, { "@id": "bts:BronchialStricture" }, { "@id": "bts:BronchopleuralFistula" }, { "@id": "bts:BronchopulmonaryHemorrhage" }, { "@id": "bts:Bronchospasm" }, { "@id": "bts:Bruising" }, { "@id": "bts:BullousDermatitis" }, { "@id": "bts:Burn" }, { "@id": "bts:ButtockPain" }, { "@id": "bts:CapillaryLeakSyndrome" }, { "@id": "bts:CarbonMonoxideDiffusingCapacityDecreased" }, { "@id": "bts:CardiacArrest" }, { "@id": "bts:CardiacDisordersOther" }, { "@id": "bts:CardiacTroponinIIncreased" }, { "@id": "bts:CardiacTroponinTIncreased" }, { "@id": "bts:Cataract" }, { "@id": "bts:CatheterRelatedInfection" }, { "@id": "bts:CD4LymphocytesDecreased" }, { "@id": "bts:CecalHemorrhage" }, { "@id": "bts:CecalInfection" }, { "@id": "bts:CentralNervousSystemNecrosis" }, { "@id": "bts:CerebrospinalFluidLeakage" }, { "@id": "bts:CervicitisInfection" }, { "@id": "bts:Cheilitis" }, { "@id": "bts:ChestPainCardiac" }, { "@id": "bts:ChestWallPain" }, { "@id": "bts:Chills" }, { "@id": "bts:Cholecystitis" }, { "@id": "bts:CholesterolHigh" }, { "@id": "bts:ChronicKidneyDisease" }, { "@id": "bts:Chylothorax" }, { "@id": "bts:CognitiveDisturbance" }, { "@id": "bts:Colitis" }, { "@id": "bts:ColonicFistula" }, { "@id": "bts:ColonicHemorrhage" }, { "@id": "bts:ColonicObstruction" }, { "@id": "bts:ColonicPerforation" }, { "@id": "bts:ColonicStenosis" }, { "@id": "bts:ColonicUlcer" }, { "@id": "bts:ConcentrationImpairment" }, { "@id": "bts:ConductionDisorder" }, { "@id": "bts:Confusion" }, { "@id": "bts:Congenital" }, { "@id": "bts:FamilialandGeneticDisordersOther" }, { "@id": "bts:Conjunctivitis" }, { "@id": "bts:ConjunctivitisInfective" }, { "@id": "bts:Constipation" }, { "@id": "bts:ConstrictivePericarditis" }, { "@id": "bts:CornealInfection" }, { "@id": "bts:CornealUlcer" }, { "@id": "bts:Cough" }, { "@id": "bts:CPKIncreased" }, { "@id": "bts:CranialNerveInfection" }, { "@id": "bts:CreatinineIncreased" }, { "@id": "bts:Cushingoid" }, { "@id": "bts:CystitisNoninfective" }, { "@id": "bts:CytokineReleaseSyndrome" }, { "@id": "bts:DeathNeonatal" }, { "@id": "bts:DeathNOS" }, { "@id": "bts:Dehydration" }, { "@id": "bts:DelayedOrgasm" }, { "@id": "bts:DelayedPuberty" }, { "@id": "bts:Delirium" }, { "@id": "bts:Delusions" }, { "@id": "bts:DentalCaries" }, { "@id": "bts:DepressedLevelofConsciousness" }, { "@id": "bts:Depression" }, { "@id": "bts:DermatitisRadiation" }, { "@id": "bts:DeviceRelatedInfection" }, { "@id": "bts:Diarrhea" }, { "@id": "bts:DisseminatedIntravascularCoagulation" }, { "@id": "bts:Dizziness" }, { "@id": "bts:DryEye" }, { "@id": "bts:DryMouth" }, { "@id": "bts:DrySkin" }, { "@id": "bts:DuodenalFistula" }, { "@id": "bts:DuodenalHemorrhage" }, { "@id": "bts:DuodenalInfection" }, { "@id": "bts:DuodenalObstruction" }, { "@id": "bts:DuodenalPerforation" }, { "@id": "bts:DuodenalStenosis" }, { "@id": "bts:DuodenalUlcer" }, { "@id": "bts:Dysarthria" }, { "@id": "bts:Dysesthesia" }, { "@id": "bts:Dysgeusia" }, { "@id": "bts:Dysmenorrhea" }, { "@id": "bts:Dyspareunia" }, { "@id": "bts:Dyspepsia" }, { "@id": "bts:Dysphagia" }, { "@id": "bts:Dysphasia" }, { "@id": "bts:Dyspnea" }, { "@id": "bts:EarandLabyrinthDisordersOther" }, { "@id": "bts:EarPain" }, { "@id": "bts:EdemaCerebral" }, { "@id": "bts:EdemaFace" }, { "@id": "bts:EdemaLimbs" }, { "@id": "bts:EdemaTrunk" }, { "@id": "bts:EjaculationDisorder" }, { "@id": "bts:EjectionFractionDecreased" }, { "@id": "bts:ElectrocardiogramQTCorrectedIntervalProlonged" }, { "@id": "bts:EncephalitisInfection" }, { "@id": "bts:EncephalomyelitisInfection" }, { "@id": "bts:Encephalopathy" }, { "@id": "bts:EndocarditisInfective" }, { "@id": "bts:EndocrineDisordersOther" }, { "@id": "bts:Endophthalmitis" }, { "@id": "bts:Enterocolitis" }, { "@id": "bts:EnterocolitisInfectious" }, { "@id": "bts:EnterovesicalFistula" }, { "@id": "bts:Epistaxis" }, { "@id": "bts:ErectileDysfunction" }, { "@id": "bts:ErythemaMultiforme" }, { "@id": "bts:Erythroderma" }, { "@id": "bts:EsophagealAnastomoticLeak" }, { "@id": "bts:EsophagealFistula" }, { "@id": "bts:EsophagealHemorrhage" }, { "@id": "bts:EsophagealInfection" }, { "@id": "bts:EsophagealNecrosis" }, { "@id": "bts:EsophagealObstruction" }, { "@id": "bts:EsophagealPain" }, { "@id": "bts:EsophagealPerforation" }, { "@id": "bts:EsophagealStenosis" }, { "@id": "bts:EsophagealUlcer" }, { "@id": "bts:EsophagealVaricesHemorrhage" }, { "@id": "bts:Esophagitis" }, { "@id": "bts:Euphoria" }, { "@id": "bts:Exostosis" }, { "@id": "bts:ExternalEarInflammation" }, { "@id": "bts:ExternalEarPain" }, { "@id": "bts:ExtraocularMuscleParesis" }, { "@id": "bts:ExtrapyramidalDisorder" }, { "@id": "bts:EyeDisordersOther" }, { "@id": "bts:EyeInfection" }, { "@id": "bts:EyePain" }, { "@id": "bts:EyelidFunctionDisorder" }, { "@id": "bts:FacialMuscleWeakness" }, { "@id": "bts:FacialNerveDisorder" }, { "@id": "bts:FacialPain" }, { "@id": "bts:Fall" }, { "@id": "bts:FallopianTubeAnastomoticLeak" }, { "@id": "bts:FallopianTubeObstruction" }, { "@id": "bts:FallopianTubePerforation" }, { "@id": "bts:FallopianTubeStenosis" }, { "@id": "bts:FatAtrophy" }, { "@id": "bts:Fatigue" }, { "@id": "bts:FebrileNeutropenia" }, { "@id": "bts:FecalIncontinence" }, { "@id": "bts:FemaleGenitalTractFistula" }, { "@id": "bts:FeminizationAcquired" }, { "@id": "bts:FetalDeath" }, { "@id": "bts:FetalGrowthRetardation" }, { "@id": "bts:Fever" }, { "@id": "bts:FibrinogenDecreased" }, { "@id": "bts:FibrosisDeepConnectiveTissue" }, { "@id": "bts:FlankPain" }, { "@id": "bts:FlashingLights" }, { "@id": "bts:Flatulence" }, { "@id": "bts:Floaters" }, { "@id": "bts:FluLikeSymptoms" }, { "@id": "bts:Flushing" }, { "@id": "bts:ForcedExpiratoryVolumeDecreased" }, { "@id": "bts:Fracture" }, { "@id": "bts:GaitDisturbance" }, { "@id": "bts:GallbladderFistula" }, { "@id": "bts:GallbladderInfection" }, { "@id": "bts:GallbladderNecrosis" }, { "@id": "bts:GallbladderObstruction" }, { "@id": "bts:GallbladderPain" }, { "@id": "bts:GallbladderPerforation" }, { "@id": "bts:GastricAnastomoticLeak" }, { "@id": "bts:GastricFistula" }, { "@id": "bts:GastricHemorrhage" }, { "@id": "bts:GastricNecrosis" }, { "@id": "bts:GastricPerforation" }, { "@id": "bts:GastricStenosis" }, { "@id": "bts:GastricUlcer" }, { "@id": "bts:Gastritis" }, { "@id": "bts:GastroesophagealRefluxDisease" }, { "@id": "bts:GastrointestinalAnastomoticLeak" }, { "@id": "bts:GastrointestinalDisordersOther" }, { "@id": "bts:GastrointestinalFistula" }, { "@id": "bts:GastrointestinalPain" }, { "@id": "bts:GastrointestinalStomaNecrosis" }, { "@id": "bts:Gastroparesis" }, { "@id": "bts:GeneralDisordersandAdministrationSiteConditionsOther" }, { "@id": "bts:GeneralizedMuscleWeakness" }, { "@id": "bts:GenitalEdema" }, { "@id": "bts:GGTIncreased" }, { "@id": "bts:GingivalPain" }, { "@id": "bts:Glaucoma" }, { "@id": "bts:GlossopharyngealNerveDisorder" }, { "@id": "bts:GlucoseIntolerance" }, { "@id": "bts:GrowthAccelerated" }, { "@id": "bts:GrowthHormoneAbnormal" }, { "@id": "bts:GrowthSuppression" }, { "@id": "bts:GumInfection" }, { "@id": "bts:Gynecomastia" }, { "@id": "bts:Hallucinations" }, { "@id": "bts:HaptoglobinDecreased" }, { "@id": "bts:HeadSoftTissueNecrosis" }, { "@id": "bts:Headache" }, { "@id": "bts:HearingImpaired" }, { "@id": "bts:HeartFailure" }, { "@id": "bts:Hematoma" }, { "@id": "bts:Hematosalpinx" }, { "@id": "bts:Hematuria" }, { "@id": "bts:HemoglobinIncreased" }, { "@id": "bts:Hemoglobinuria" }, { "@id": "bts:Hemolysis" }, { "@id": "bts:HemolyticUremicSyndrome" }, { "@id": "bts:HemorrhoidalHemorrhage" }, { "@id": "bts:Hemorrhoids" }, { "@id": "bts:HepaticFailure" }, { "@id": "bts:HepaticHemorrhage" }, { "@id": "bts:HepaticInfection" }, { "@id": "bts:HepaticNecrosis" }, { "@id": "bts:HepaticPain" }, { "@id": "bts:HepatitisViral" }, { "@id": "bts:HepatobiliaryDisordersOther" }, { "@id": "bts:Hiccups" }, { "@id": "bts:HipFracture" }, { "@id": "bts:Hirsutism" }, { "@id": "bts:Hoarseness" }, { "@id": "bts:HotFlashes" }, { "@id": "bts:Hydrocephalus" }, { "@id": "bts:Hypercalcemia" }, { "@id": "bts:Hyperglycemia" }, { "@id": "bts:Hyperhidrosis" }, { "@id": "bts:Hyperkalemia" }, { "@id": "bts:Hypermagnesemia" }, { "@id": "bts:Hypernatremia" }, { "@id": "bts:Hyperparathyroidism" }, { "@id": "bts:Hypersomnia" }, { "@id": "bts:Hypertension" }, { "@id": "bts:Hyperthyroidism" }, { "@id": "bts:Hypertrichosis" }, { "@id": "bts:Hypertriglyceridemia" }, { "@id": "bts:Hyperuricemia" }, { "@id": "bts:Hypoalbuminemia" }, { "@id": "bts:Hypocalcemia" }, { "@id": "bts:HypoglossalNerveDisorder" }, { "@id": "bts:Hypoglycemia" }, { "@id": "bts:Hypohidrosis" }, { "@id": "bts:Hypokalemia" }, { "@id": "bts:Hypomagnesemia" }, { "@id": "bts:Hyponatremia" }, { "@id": "bts:Hypoparathyroidism" }, { "@id": "bts:Hypophosphatemia" }, { "@id": "bts:Hypotension" }, { "@id": "bts:Hypothermia" }, { "@id": "bts:Hypothyroidism" }, { "@id": "bts:Hypoxia" }, { "@id": "bts:IlealFistula" }, { "@id": "bts:IlealHemorrhage" }, { "@id": "bts:IlealObstruction" }, { "@id": "bts:IlealPerforation" }, { "@id": "bts:IlealStenosis" }, { "@id": "bts:IlealUlcer" }, { "@id": "bts:Ileus" }, { "@id": "bts:ImmuneSystemDisordersOther" }, { "@id": "bts:InfectionsandInfestationsOther" }, { "@id": "bts:InfectiveMyositis" }, { "@id": "bts:InfusionRelatedReaction" }, { "@id": "bts:InfusionSiteExtravasation" }, { "@id": "bts:InjectionSiteReaction" }, { "@id": "bts:InjurytoCarotidArtery" }, { "@id": "bts:InjurytoInferiorVenaCava" }, { "@id": "bts:InjurytoJugularVein" }, { "@id": "bts:InjurytoSuperiorVenaCava" }, { "@id": "bts:Injury" }, { "@id": "bts:PoisoningandProceduralComplicationsOther" }, { "@id": "bts:INRIncreased" }, { "@id": "bts:Insomnia" }, { "@id": "bts:IntestinalStomaLeak" }, { "@id": "bts:IntestinalStomaObstruction" }, { "@id": "bts:IntestinalStomaSiteBleeding" }, { "@id": "bts:Intra-AbdominalHemorrhage" }, { "@id": "bts:IntracranialHemorrhage" }, { "@id": "bts:IntraoperativeArterialInjury" }, { "@id": "bts:IntraoperativeBreastInjury" }, { "@id": "bts:IntraoperativeCardiacInjury" }, { "@id": "bts:IntraoperativeEarInjury" }, { "@id": "bts:IntraoperativeEndocrineInjury" }, { "@id": "bts:IntraoperativeGastrointestinalInjury" }, { "@id": "bts:IntraoperativeHeadandNeckInjury" }, { "@id": "bts:IntraoperativeHemorrhage" }, { "@id": "bts:IntraoperativeHepatobiliaryInjury" }, { "@id": "bts:IntraoperativeMusculoskeletalInjury" }, { "@id": "bts:IntraoperativeNeurologicalInjury" }, { "@id": "bts:IntraoperativeOcularInjury" }, { "@id": "bts:IntraoperativeRenalInjury" }, { "@id": "bts:IntraoperativeReproductiveTractInjury" }, { "@id": "bts:IntraoperativeRespiratoryInjury" }, { "@id": "bts:IntraoperativeSkinInjury" }, { "@id": "bts:IntraoperativeSplenicInjury" }, { "@id": "bts:IntraoperativeUrinaryInjury" }, { "@id": "bts:IntraoperativeVenousInjury" }, { "@id": "bts:InvestigationsOther" }, { "@id": "bts:IronOverload" }, { "@id": "bts:IrregularMenstruation" }, { "@id": "bts:Irritability" }, { "@id": "bts:IschemiaCerebrovascular" }, { "@id": "bts:IVthNerveDisorder" }, { "@id": "bts:JejunalFistula" }, { "@id": "bts:JejunalHemorrhage" }, { "@id": "bts:JejunalObstruction" }, { "@id": "bts:JejunalPerforation" }, { "@id": "bts:JejunalStenosis" }, { "@id": "bts:JejunalUlcer" }, { "@id": "bts:JointEffusion" }, { "@id": "bts:JointInfection" }, { "@id": "bts:JointRangeofMotionDecreased" }, { "@id": "bts:JointRangeofMotionDecreasedCervicalSpine" }, { "@id": "bts:JointRangeofMotionDecreasedLumbarSpine" }, { "@id": "bts:Keratitis" }, { "@id": "bts:KidneyAnastomoticLeak" }, { "@id": "bts:KidneyInfection" }, { "@id": "bts:Kyphosis" }, { "@id": "bts:LactationDisorder" }, { "@id": "bts:LargeIntestinalAnastomoticLeak" }, { "@id": "bts:LaryngealEdema" }, { "@id": "bts:LaryngealFistula" }, { "@id": "bts:LaryngealHemorrhage" }, { "@id": "bts:LaryngealInflammation" }, { "@id": "bts:LaryngealMucositis" }, { "@id": "bts:LaryngealObstruction" }, { "@id": "bts:LaryngealStenosis" }, { "@id": "bts:Laryngitis" }, { "@id": "bts:LaryngopharyngealDysesthesia" }, { "@id": "bts:Laryngospasm" }, { "@id": "bts:LeftVentricularSystolicDysfunction" }, { "@id": "bts:Lethargy" }, { "@id": "bts:LeukemiaSecondarytoOncologyChemotherapy" }, { "@id": "bts:Leukocytosis" }, { "@id": "bts:Leukoencephalopathy" }, { "@id": "bts:LibidoDecreased" }, { "@id": "bts:LibidoIncreased" }, { "@id": "bts:LipInfection" }, { "@id": "bts:LipPain" }, { "@id": "bts:LipaseIncreased" }, { "@id": "bts:Lipohypertrophy" }, { "@id": "bts:LocalizedEdema" }, { "@id": "bts:Lordosis" }, { "@id": "bts:LowerGastrointestinalHemorrhage" }, { "@id": "bts:LungInfection" }, { "@id": "bts:LymphGlandInfection" }, { "@id": "bts:LymphLeakage" }, { "@id": "bts:LymphNodePain" }, { "@id": "bts:Lymphedema" }, { "@id": "bts:Lymphocele" }, { "@id": "bts:LymphocyteCountDecreased" }, { "@id": "bts:LymphocyteCountIncreased" }, { "@id": "bts:Malabsorption" }, { "@id": "bts:Malaise" }, { "@id": "bts:Mania" }, { "@id": "bts:MediastinalHemorrhage" }, { "@id": "bts:MediastinalInfection" }, { "@id": "bts:MemoryImpairment" }, { "@id": "bts:Meningismus" }, { "@id": "bts:Meningitis" }, { "@id": "bts:Menopause" }, { "@id": "bts:Menorrhagia" }, { "@id": "bts:MetabolismandNutritionDisordersOther" }, { "@id": "bts:MiddleEarInflammation" }, { "@id": "bts:MitralValveDisease" }, { "@id": "bts:Mobitz(Type)IIAtrioventricularBlock" }, { "@id": "bts:MobitzTypeI" }, { "@id": "bts:MovementsInvoluntary" }, { "@id": "bts:MucosalInfection" }, { "@id": "bts:MucositisOral" }, { "@id": "bts:Multi-OrganFailure" }, { "@id": "bts:MuscleWeaknessLeft-Sided" }, { "@id": "bts:MuscleWeaknessLowerLimb" }, { "@id": "bts:MuscleWeaknessRight-Sided" }, { "@id": "bts:MuscleWeaknessTrunk" }, { "@id": "bts:MuscleWeaknessUpperLimb" }, { "@id": "bts:MusculoskeletalandConnectiveTissueDisordersOther" }, { "@id": "bts:MusculoskeletalDeformity" }, { "@id": "bts:Myalgia" }, { "@id": "bts:Myelitis" }, { "@id": "bts:MyelodysplasticSyndrome" }, { "@id": "bts:MyocardialInfarction" }, { "@id": "bts:Myocarditis" }, { "@id": "bts:Myositis" }, { "@id": "bts:NailDiscoloration" }, { "@id": "bts:NailInfection" }, { "@id": "bts:NailLoss" }, { "@id": "bts:NailRidging" }, { "@id": "bts:NasalCongestion" }, { "@id": "bts:Nausea" }, { "@id": "bts:NeckEdema" }, { "@id": "bts:NeckPain" }, { "@id": "bts:NeckSoftTissueNecrosis" }, { "@id": "bts:NeoplasmsBenign" }, { "@id": "bts:MalignantandUnspecified(InclCystsandPolyps)Other" }, { "@id": "bts:NervousSystemDisordersOther" }, { "@id": "bts:Neuralgia" }, { "@id": "bts:NeutrophilCountDecreased" }, { "@id": "bts:NightBlindness" }, { "@id": "bts:NippleDeformity" }, { "@id": "bts:Non-CardiacChestPain" }, { "@id": "bts:Nystagmus" }, { "@id": "bts:Obesity" }, { "@id": "bts:ObstructionGastric" }, { "@id": "bts:OculomotorNerveDisorder" }, { "@id": "bts:OlfactoryNerveDisorder" }, { "@id": "bts:Oligospermia" }, { "@id": "bts:OpticNerveDisorder" }, { "@id": "bts:OralCavityFistula" }, { "@id": "bts:OralDysesthesia" }, { "@id": "bts:OralHemorrhage" }, { "@id": "bts:OralPain" }, { "@id": "bts:OsteonecrosisofJaw" }, { "@id": "bts:Osteoporosis" }, { "@id": "bts:OtitisExterna" }, { "@id": "bts:OtitisMedia" }, { "@id": "bts:OvarianHemorrhage" }, { "@id": "bts:OvarianInfection" }, { "@id": "bts:OvarianRupture" }, { "@id": "bts:OvulationPain" }, { "@id": "bts:Pain" }, { "@id": "bts:PaininExtremity" }, { "@id": "bts:PainofSkin" }, { "@id": "bts:Palmar-PlantarErythrodysesthesiaSyndrome" }, { "@id": "bts:Palpitations" }, { "@id": "bts:PancreasInfection" }, { "@id": "bts:PancreaticAnastomoticLeak" }, { "@id": "bts:PancreaticDuctStenosis" }, { "@id": "bts:PancreaticEnzymesDecreased" }, { "@id": "bts:PancreaticFistula" }, { "@id": "bts:PancreaticHemorrhage" }, { "@id": "bts:PancreaticNecrosis" }, { "@id": "bts:Pancreatitis" }, { "@id": "bts:Papilledema" }, { "@id": "bts:PapulopustularRash" }, { "@id": "bts:Paresthesia" }, { "@id": "bts:Paronychia" }, { "@id": "bts:ParoxysmalAtrialTachycardia" }, { "@id": "bts:PelvicFloorMuscleWeakness" }, { "@id": "bts:PelvicInfection" }, { "@id": "bts:PelvicPain" }, { "@id": "bts:PelvicSoftTissueNecrosis" }, { "@id": "bts:PenileInfection" }, { "@id": "bts:PenilePain" }, { "@id": "bts:PerforationBileDuct" }, { "@id": "bts:PericardialEffusion" }, { "@id": "bts:PericardialTamponade" }, { "@id": "bts:Pericarditis" }, { "@id": "bts:PerinealPain" }, { "@id": "bts:PeriodontalDisease" }, { "@id": "bts:PeriorbitalEdema" }, { "@id": "bts:PeriorbitalInfection" }, { "@id": "bts:PeripheralIschemia" }, { "@id": "bts:PeripheralMotorNeuropathy" }, { "@id": "bts:PeripheralNerveInfection" }, { "@id": "bts:PeripheralSensoryNeuropathy" }, { "@id": "bts:PeritonealInfection" }, { "@id": "bts:PeritonealNecrosis" }, { "@id": "bts:PersonalityChange" }, { "@id": "bts:PhantomPain" }, { "@id": "bts:PharyngealAnastomoticLeak" }, { "@id": "bts:PharyngealFistula" }, { "@id": "bts:PharyngealHemorrhage" }, { "@id": "bts:PharyngealMucositis" }, { "@id": "bts:PharyngealNecrosis" }, { "@id": "bts:PharyngealStenosis" }, { "@id": "bts:Pharyngitis" }, { "@id": "bts:PharyngolaryngealPain" }, { "@id": "bts:Phlebitis" }, { "@id": "bts:PhlebitisInfective" }, { "@id": "bts:Photophobia" }, { "@id": "bts:Photosensitivity" }, { "@id": "bts:PlateletCountDecreased" }, { "@id": "bts:PleuralEffusion" }, { "@id": "bts:PleuralHemorrhage" }, { "@id": "bts:PleuralInfection" }, { "@id": "bts:PleuriticPain" }, { "@id": "bts:Pneumonitis" }, { "@id": "bts:Pneumothorax" }, { "@id": "bts:PortalHypertension" }, { "@id": "bts:PortalVeinThrombosis" }, { "@id": "bts:PostnasalDrip" }, { "@id": "bts:PostoperativeHemorrhage" }, { "@id": "bts:PostoperativeThoracicProcedureComplication" }, { "@id": "bts:PrecociousPuberty" }, { "@id": "bts:Pregnancy" }, { "@id": 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measuring the amount of carbon monoxide detected in a patient's lungs.", "rdfs:label": "DLCORefPredictivePercent", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "DLCO Ref Predictive Percent", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ECOGPerformanceStatus", "@type": "rdfs:Class", "rdfs:comment": "The ECOG functional performance status of the patient/participant.", "rdfs:label": "ECOGPerformanceStatus", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:\"0\"" }, { "@id": "bts:\"1\"" }, { "@id": "bts:\"2\"" }, { "@id": "bts:\"3\"" }, { "@id": "bts:\"4\"" }, { "@id": "bts:\"5\"" }, { "@id": "bts:\"0.0\"" }, { "@id": "bts:\"1.0\"" }, { "@id": "bts:\"2.0\"" }, { "@id": "bts:\"3.0\"" }, { "@id": "bts:\"4.0\"" }, { "@id": "bts:\"5.0\"" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "ECOG Performance Status", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:FEV1FVCPostBronchPercent", "@type": "rdfs:Class", "rdfs:comment": "Percentage value to represent result of Forced Expiratory Volume in 1 second (FEV1) divided by the Forced Vital Capacity (FVC) post-bronchodilator.", "rdfs:label": "FEV1FVCPostBronchPercent", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "FEV1 FVC Post Bronch Percent", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:FEV1FVCPreBronchPercent", "@type": "rdfs:Class", "rdfs:comment": "Percentage value to represent result of Forced Expiratory Volume in 1 second (FEV1) divided by the Forced Vital Capacity (FVC) pre-bronchodilator.", "rdfs:label": "FEV1FVCPreBronchPercent", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "FEV 1 FVC Pre Bronch Percent", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:FEV1RefPostBronchPercent", "@type": "rdfs:Class", "rdfs:comment": "The percentage comparison to a normal value reference range of the volume of air that a patient can forcibly exhale from the lungs in one second post-bronchodilator.", "rdfs:label": "FEV1RefPostBronchPercent", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "FEV1 Ref Post Bronch Percent", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:FEV1RefPreBronchPercent", "@type": "rdfs:Class", "rdfs:comment": "The percentage comparison to a normal value reference range of the volume of air that a patient can forcibly exhale from the lungs in one second pre-bronchodilator.", "rdfs:label": "FEV1RefPreBronchPercent", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "FEV1 Ref Pre Bronch Percent", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Height", "@type": "rdfs:Class", "rdfs:comment": "The height of the patient in centimeters.", "rdfs:label": "Height", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Height", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HepatitisSustainedVirologicalResponse", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether the patient received treatment for a risk factor the patient had at the time of or prior to their diagnosis.", "rdfs:label": "HepatitisSustainedVirologicalResponse", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Hepatitis Sustained Virological Response", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HPVPositiveType", "@type": "rdfs:Class", "rdfs:comment": "Text classification to represent the strain or type of human papillomavirus identified in an individual.", "rdfs:label": "HPVPositiveType", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:\"16\"" }, { "@id": "bts:\"18\"" }, { "@id": "bts:\"26\"" }, { "@id": "bts:\"31\"" }, { "@id": "bts:\"33\"" }, { "@id": "bts:\"35\"" }, { "@id": "bts:\"39\"" }, { "@id": "bts:\"45\"" }, { "@id": "bts:\"51\"" }, { "@id": "bts:\"52\"" }, { "@id": "bts:\"53\"" }, { "@id": "bts:\"56\"" }, { "@id": "bts:\"58\"" }, { "@id": "bts:\"59\"" }, { "@id": "bts:\"63\"" }, { "@id": "bts:\"66\"" }, { "@id": "bts:\"68\"" }, { "@id": "bts:\"70\"" }, { "@id": "bts:\"73\"" }, { "@id": "bts:\"82\"" }, { "@id": "bts:Other" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "HPV Positive Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:KarnofskyPerformanceStatus", "@type": "rdfs:Class", "rdfs:comment": "Text term used to describe the classification used of the functional capabilities of a person.", "rdfs:label": "KarnofskyPerformanceStatus", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:\"0\"" }, { "@id": "bts:\"10\"" }, { "@id": "bts:\"20\"" }, { "@id": "bts:\"30\"" }, { "@id": "bts:\"40\"" }, { "@id": "bts:\"50\"" }, { "@id": "bts:\"60\"" }, { "@id": "bts:\"70\"" }, { "@id": "bts:\"80\"" }, { "@id": "bts:\"90\"" }, { "@id": "bts:\"100\"" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Karnofsky Performance Status", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MenopauseStatus", "@type": "rdfs:Class", "rdfs:comment": "Text term used to describe the patient's menopause status.", "rdfs:label": "MenopauseStatus", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Premenopausal" }, { "@id": "bts:Perimenopausal" }, { "@id": "bts:Postmenopausal" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Menopause Status", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:PancreatitisOnsetYear", "@type": "rdfs:Class", "rdfs:comment": "Date of onset of pancreatitis.", "rdfs:label": "PancreatitisOnsetYear", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Pancreatitis Onset Year", "sms:required": "sms:false", "sms:validationRules": [ "num" ] }, { "@id": "bts:RefluxTreatmentType", "@type": "rdfs:Class", "rdfs:comment": "Text term used to describe the types of treatment used to manage gastroesophageal reflux disease (GERD).", "rdfs:label": "RefluxTreatmentType", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Antacids" }, { "@id": "bts:H2Blockers" }, { "@id": "bts:MedicallyTreated" }, { "@id": "bts:NoTreatment" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:NotReported" }, { "@id": "bts:ProtonPumpInhibitors" }, { "@id": "bts:SurgicallyTreated" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Reflux Treatment Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RiskFactor", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe a risk factor the patient had at the time of or prior to their diagnosis.", "rdfs:label": "RiskFactor", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:AlcoholConsumption" }, { "@id": "bts:AlcoholicLiverDisease" }, { "@id": "bts:AllergyAnimalNOS" }, { "@id": "bts:AllergyAnt" }, { "@id": "bts:AllergyBee" }, { "@id": "bts:AllergyCat" }, { "@id": "bts:AllergyDairyorLactose" }, { "@id": "bts:AllergyDog" }, { "@id": "bts:AllergyEggs" }, { "@id": "bts:AllergyFoodNOS" }, { "@id": "bts:AllergyFruit" }, { "@id": "bts:AllergyMeat" }, { "@id": "bts:AllergyMoldorDust" }, { "@id": "bts:AllergyNuts" }, { "@id": "bts:AllergyProcessedFoods" }, { "@id": "bts:AllergySeafood" }, { "@id": "bts:AllergyWasp" }, { "@id": "bts:Alpha-1AntitrypsinDeficiency" }, { "@id": "bts:AutoimmuneAtrophicChronicGastritis" }, { "@id": "bts:Barrett'sEsophagus" }, { "@id": "bts:Beckwith-Wiedemann" }, { "@id": "bts:Behcet'sDisease" }, { "@id": "bts:Cancer" }, { "@id": "bts:Cholelithiasis" }, { "@id": "bts:ChronicHepatitis" }, { "@id": "bts:Cirrhosis" }, { "@id": "bts:ColonPolyps" }, { "@id": "bts:Commonvariableimmunedeficiency(CVID)" }, { "@id": "bts:Denys-DrashSyndrome" }, { "@id": "bts:DiabetesNOS" }, { "@id": "bts:DiabetesTypeI" }, { "@id": "bts:DiabetesTypeII" }, { "@id": "bts:Diet" }, { "@id": "bts:Diverticulitis" }, { "@id": "bts:Endometriosis" }, { "@id": "bts:Endosalpingiosis" }, { "@id": "bts:Eczema" }, { "@id": "bts:Epstein-BarrVirus" }, { "@id": "bts:FamilialAdenomatousPolyposis" }, { "@id": "bts:FanconiAnemia" }, { "@id": "bts:Fibrosis" }, { "@id": "bts:GastricPolyp(s)" }, { "@id": "bts:Gilbert'sSyndrome" }, { "@id": "bts:GorlinSyndrome" }, { "@id": "bts:Hashimoto'sThyroiditis" }, { "@id": "bts:HayFever" }, { "@id": "bts:Headache" }, { "@id": "bts:HelicobacterPylori-AssociatedGastritis" }, { "@id": "bts:HematologicDisorderNOS" }, { "@id": "bts:Hemihypertrophy" }, { "@id": "bts:Hemochromatosis" }, { "@id": "bts:HepaticEncephalopathy" }, { "@id": "bts:HepatitisBInfection" }, { "@id": "bts:HepatitisCInfection" }, { "@id": "bts:HepatitisNOS" }, { "@id": "bts:HighGradeDysplasia" }, { "@id": "bts:HIV" }, { "@id": "bts:HumanPapillomavirusInfection" }, { "@id": "bts:Hypospadias" }, { "@id": "bts:IntestinalMetaplasia" }, { "@id": "bts:IronOverload" }, { "@id": "bts:Li-FraumeniSyndrome" }, { "@id": "bts:LowGradeDysplasia" }, { "@id": "bts:LymphocyticThyroiditis" }, { "@id": "bts:LynchSyndrome" }, { "@id": "bts:MyastheniaGravis" }, { "@id": "bts:NonalcoholicFattyLiverDisease" }, { "@id": "bts:NonalcoholicSteatohepatitis" }, { "@id": "bts:Obesity" }, { "@id": "bts:OralContraceptives" }, { "@id": "bts:Pancreatitis" }, { "@id": "bts:ParasiticDiseaseofBiliaryTract" }, { "@id": "bts:PrimarySclerosingCholangitis" }, { "@id": "bts:RecurrentPyogenicCholangitis" }, { "@id": "bts:RefluxDisease" }, { "@id": "bts:RheumatoidArthritis" }, { "@id": "bts:Rubinstein-TaybiSyndrome" }, { "@id": "bts:Sarcoidosis" }, { "@id": "bts:Seizure" }, { "@id": "bts:SensoryChanges" }, { "@id": "bts:Seroustubalintraepithelialcarcinoma(STIC)" }, { "@id": "bts:Steatosis" }, { "@id": "bts:Tattoo" }, { "@id": "bts:ThyroidNodularHyperplasia" }, { "@id": "bts:TobaccoNOS" }, { "@id": "bts:TobaccoSmokeless" }, { "@id": "bts:TobaccoSmoking" }, { "@id": "bts:TurcotSyndrome" }, { "@id": "bts:UndescendedTestis" }, { "@id": "bts:VisionChanges" }, { "@id": "bts:WagrSyndrome" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Risk Factor", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RiskFactorTreatment", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether the patient received treatment for a risk factor the patient had at the time of or prior to their diagnosis.", "rdfs:label": "RiskFactorTreatment", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Risk Factor Treatment", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ViralHepatitisSerologies", "@type": "rdfs:Class", "rdfs:comment": "Text term that describes the kind of serological laboratory test used to determine the patient's hepatitus status.", "rdfs:label": "ViralHepatitisSerologies", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:HBVCoreAntibody" }, { "@id": "bts:HBVDNA" }, { "@id": "bts:HBVGenotype" }, { "@id": "bts:HBVSurfaceAntibody" }, { "@id": "bts:HCVGenotype" }, { "@id": "bts:HepatitisBSurfaceAntigen" }, { "@id": "bts:HepatitisCAntibody" }, { "@id": "bts:HepatitisCVirusRNA" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Viral Hepatitis Serologies", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Weight", "@type": "rdfs:Class", "rdfs:comment": "The weight of the patient measured in kilograms.", "rdfs:label": "Weight", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Weight", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AdverseEventGrade", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe a specific histone variants, which are proteins that substitute for the core canonical histones.", "rdfs:label": "AdverseEventGrade", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Grade1" }, { "@id": "bts:Grade2" }, { "@id": "bts:Grade3" }, { "@id": "bts:Grade4" }, { "@id": "bts:Grade5" } ], "sms:displayName": "Adverse Event Grade", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AIDSRiskFactors", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe a risk factor of the acquired immunodeficiency syndrome (AIDS) that the patient either had at time time of the study or experienced in the past.", "rdfs:label": "AIDSRiskFactors", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Candidiasis" }, { "@id": "bts:Coccidioidomycosis" }, { "@id": "bts:Cryptococcosis" }, { "@id": "bts:Cytomegalovirus" }, { "@id": "bts:Encephalopathy" }, { "@id": "bts:HerpesSimplexVirus" }, { "@id": "bts:Histoplasmosis" }, { "@id": "bts:Isosporiasis" }, { "@id": "bts:MycobacteriumaviumComplex" }, { "@id": "bts:Mycobacteriumtuberculosis" }, { "@id": "bts:Mycobacterium" }, { "@id": "bts:NOS" }, { "@id": "bts:Nocardiosis" }, { "@id": "bts:PneumocystisPneumonia" }, { "@id": "bts:Pneumonia" }, { "@id": "bts:ProgressiveMultifocalLeukoencephalopathy" }, { "@id": "bts:SalmonellaSepticemia" }, { "@id": "bts:Toxoplasmosis" }, { "@id": "bts:WastingSyndrome" } ], "sms:displayName": "AIDS Risk Factors", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BodySurfaceArea", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to represent the 2-dimensional extent of the body surface relating height to weight.", "rdfs:label": "BodySurfaceArea", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Body Surface Area", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CD4Count", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the outcome of the procedure to determine the amount of the CD4 expressing cells in a sample.", "rdfs:label": "CD4Count", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "CD4 Count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CDCHIVRiskFactors", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe a risk factor for human immunodeficiency virus, as described by the Center for Disease Control.", "rdfs:label": "CDCHIVRiskFactors", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Hemophiliac" }, { "@id": "bts:HeterosexualContact" }, { "@id": "bts:HomosexualContact" }, { "@id": "bts:IntravenousDrugUser" }, { "@id": "bts:None" }, { "@id": "bts:TransfusionRecipient" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "CDC HIV Risk Factors", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:DaystoImaging", "@type": "rdfs:Class", "rdfs:comment": "Number of days between the date used for index and the date the imaging or scan was performed on the patient. If not applicable please enter 'Not Applicable'", "rdfs:label": "DaystoImaging", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Days to Imaging", "sms:required": "sms:false", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:EvidenceofRecurrenceType", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the type of evidence used to determine whether the patient's disease recurred", "rdfs:label": "EvidenceofRecurrenceType", "rdfs:subClassOf": [ { "@id": "bts:FollowUp" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:BiopsywithHistologicConfirmation" }, { "@id": "bts:ConvincingImageSource" }, { "@id": "bts:PositiveBiomarkers" } ], "sms:displayName": "Evidence of Recurrence Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HAARTTreatmentIndicator", "@type": 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If both tumors were sequenced, both tumors would have synchronous malignancies.", "rdfs:label": "SynchronousMalignancy", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Synchronous Malignancy", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:TumorConfinedtoOrganofOrigin", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether the tumor is confined to the organ where it originated and did not spread to a proximal or distant location within the body.", "rdfs:label": "TumorConfinedtoOrganofOrigin", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Tumor Confined to Organ of Origin", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:TumorFocality", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe whether the patient's disease originated in a single location or multiple locations.", "rdfs:label": "TumorFocality", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Multifocal" }, { "@id": "bts:Unifocal" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Tumor Focality", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:GrossTumorWeight", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the gross pathologic tumor weight, measured in grams.", "rdfs:label": "GrossTumorWeight", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Gross Tumor Weight", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BreslowThickness", "@type": "rdfs:Class", "rdfs:comment": "The number that describes the distance, in millimeters, between the upper layer of the epidermis and the deepest point of tumor penetration.", "rdfs:label": "BreslowThickness", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Breslow Thickness", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:VascularInvasionPresent", "@type": "rdfs:Class", "rdfs:comment": "The yes/no indicator to ask if large vessel or venous invasion was detected by surgery or presence in a tumor specimen.", "rdfs:label": "VascularInvasionPresent", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes-VascularInvasionPresent" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" }, { "@id": "bts:NotAllowedToCollect" } ], "sms:displayName": "Vascular Invasion Present", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:VascularInvasionType", "@type": "rdfs:Class", "rdfs:comment": "Text term that represents the type of vascular tumor invasion.", "rdfs:label": "VascularInvasionType", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Extramural" }, { "@id": "bts:Intramural" }, { "@id": "bts:Macro" }, { "@id": "bts:Micro" }, { "@id": "bts:NoVascularInvasion" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Vascular Invasion Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AnaplasiaPresent", "@type": "rdfs:Class", "rdfs:comment": "Yes/no/unknown/Not Reported indicator used to describe whether anaplasia was present at the time of diagnosis.", "rdfs:label": "AnaplasiaPresent", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes-AnaplasiaPresent" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Anaplasia Present", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AnaplasiaPresentType", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the morphologic findings indicating the presence of a malignant cellular infiltrate characterized by the presence of large pleomorphic cells, necrosis, and high mitotic activity in a tissue sample.", "rdfs:label": "AnaplasiaPresentType", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Absent" }, { "@id": "bts:Diffuse" }, { "@id": "bts:Equivocal" }, { "@id": "bts:Focal" }, { "@id": "bts:Present" }, { "@id": "bts:Sclerosis" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Anaplasia Present Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Laterality", "@type": "rdfs:Class", "rdfs:comment": "For tumors in paired organs, designates the side on which the cancer originates.", "rdfs:label": "Laterality", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Bilateral" }, { "@id": "bts:Left" }, { "@id": "bts:Midline" }, { "@id": "bts:Right" }, { "@id": "bts:Unilateral" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Laterality", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:PerineuralInvasionPresent", "@type": "rdfs:Class", "rdfs:comment": "A yes/no indicator to ask if perineural invasion or infiltration of tumor or cancer is present.", "rdfs:label": "PerineuralInvasionPresent", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Perineural Invasion Present", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LymphaticInvasionPresent", "@type": "rdfs:Class", "rdfs:comment": "A yes/no indicator to ask if small or thin-walled vessel invasion is present, indicating lymphatic involvement", "rdfs:label": "LymphaticInvasionPresent", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Lymphatic Invasion Present", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LymphNodesPositive", "@type": "rdfs:Class", "rdfs:comment": "The number of lymph nodes involved with disease as determined by pathologic examination.", "rdfs:label": "LymphNodesPositive", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Lymph Nodes Positive", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LymphNodesTested", "@type": "rdfs:Class", "rdfs:comment": "The number of lymph nodes tested to determine whether lymph nodes were involved with disease as determined by a pathologic examination.", "rdfs:label": "LymphNodesTested", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Lymph Nodes Tested", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:PeritonealFluidCytologicalStatus", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the malignant status of the peritoneal fluid determined by cytologic testing.", "rdfs:label": "PeritonealFluidCytologicalStatus", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Atypical" }, { "@id": "bts:Malignant" }, { "@id": "bts:Non-Malignant" }, { "@id": "bts:Unsatisfactory" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Peritoneal Fluid Cytological Status", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ClassificationofTumor", "@type": "rdfs:Class", "rdfs:comment": "Text that describes the kind of disease present in the tumor specimen as related to a specific timepoint.", "rdfs:label": "ClassificationofTumor", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Primary" }, { "@id": "bts:Metastasis" }, { "@id": "bts:Recurrence" }, { "@id": "bts:Other" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" }, { "@id": "bts:NotAllowedToCollect" } ], "sms:displayName": "Classification of Tumor", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BestOverallResponse", "@type": "rdfs:Class", "rdfs:comment": "The best improvement achieved throughout the entire course of protocol treatment.", "rdfs:label": "BestOverallResponse", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:AJ-AdjuvantTherapy" }, { "@id": "bts:CPD-ClinicalProgression" }, { "@id": "bts:CR-CompleteResponse" }, { "@id": "bts:CRU-CompleteResponseUnconfirmed" }, { "@id": "bts:DU-DiseaseUnchanged" }, { "@id": "bts:IMR-Immunoresponse" }, { "@id": "bts:IPD-Immunoprogression" }, { "@id": "bts:MR-Minimal/MarginalResponse" }, { "@id": "bts:MX-MixedResponse" }, { "@id": "bts:Non-CR/Non-PD-Non-CR/Non-PD" }, { "@id": "bts:NPB-NoPalliativeBenefit" }, { "@id": "bts:NR-NoResponse" }, { "@id": "bts:PA-PalliativeTherapy" }, { "@id": "bts:PB-PalliativeBenefit" }, { "@id": "bts:PD-ProgressiveDisease" }, { "@id": "bts:PPD-Pseudoprogression" }, { "@id": "bts:PR-PartialResponse" }, { "@id": "bts:PSR-Pseudoresponse" }, { "@id": "bts:RD-ResponsiveDisease" }, { "@id": "bts:RP-Response" }, { "@id": "bts:RPD-RadiographicProgressiveDisease" }, { "@id": "bts:SCR-StringentCompleteResponse" }, { "@id": "bts:SD-StableDisease" }, { "@id": "bts:SPD-SurgicalProgression" }, { "@id": "bts:TE-TooEarly" }, { "@id": "bts:VGPR-VeryGoodPartialResponse" } ], "sms:displayName": "Best Overall Response", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MitoticCount", "@type": "rdfs:Class", "rdfs:comment": "The number of mitoses identified under the microscope in tumors. The method of counting varies, according to the specific tumor examined. Usually, the mitotic count is determined based on the number of mitoses per high power field (40X) or 10 high power fields.", "rdfs:label": "MitoticCount", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Mitotic Count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AJCCClinicalM", "@type": "rdfs:Class", "rdfs:comment": "Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.", "rdfs:label": "AJCCClinicalM", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:M0" }, { "@id": "bts:M1" }, { "@id": "bts:M1a" }, { "@id": "bts:M1b" }, { "@id": "bts:M1c" }, { "@id": "bts:MX" }, { "@id": "bts:CM0(i+)" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "AJCC Clinical M", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AJCCClinicalN", "@type": "rdfs:Class", "rdfs:comment": "Extent of the regional lymph node involvement for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.", "rdfs:label": "AJCCClinicalN", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:N0" }, { "@id": "bts:N0(i+)" }, { "@id": "bts:N0(i-)" }, { "@id": "bts:N0(mol+)" }, { "@id": "bts:N0(mol-)" }, { "@id": "bts:N1" }, { "@id": "bts:N1a" }, { "@id": "bts:N1b" }, { "@id": "bts:N1bI" }, { "@id": "bts:N1bII" }, { "@id": "bts:N1bIII" }, { "@id": "bts:N1bIV" }, { "@id": "bts:N1c" }, { "@id": "bts:N1mi" }, { "@id": "bts:N2" }, { "@id": "bts:N2a" }, { "@id": "bts:N2b" }, { "@id": "bts:N2c" }, { "@id": "bts:N3" }, { "@id": "bts:N3a" }, { "@id": "bts:N3b" }, { "@id": "bts:N3c" }, { "@id": "bts:N4" }, { "@id": "bts:NX" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "AJCC Clinical N", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AJCCClinicalStage", "@type": "rdfs:Class", "rdfs:comment": "Stage group determined from clinical information on the tumor (T), regional node (N) and metastases (M) and by grouping cases with similar prognosis for cancer.", "rdfs:label": "AJCCClinicalStage", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Stage0" }, { "@id": "bts:Stage0a" }, { "@id": "bts:Stage0is" }, { "@id": "bts:StageI" }, { "@id": "bts:StageIA" }, { "@id": "bts:StageIA1" }, { "@id": "bts:StageIA2" }, { "@id": "bts:StageIB" }, { "@id": "bts:StageIB1" }, { "@id": "bts:StageIB2" }, { "@id": "bts:StageIC" }, { "@id": "bts:StageII" }, { "@id": "bts:StageIIA" }, { "@id": "bts:StageIIA1" }, { "@id": "bts:StageIIA2" }, { "@id": "bts:StageIIB" }, { "@id": "bts:StageIIC" }, { "@id": "bts:StageIIC1" }, { "@id": "bts:StageIII" }, { "@id": "bts:StageIIIA" }, { "@id": "bts:StageIIIB" }, { "@id": "bts:StageIIIC" }, { "@id": "bts:StageIIIC1" }, { "@id": "bts:StageIIIC2" }, { "@id": "bts:StageIS" }, { "@id": "bts:StageIV" }, { "@id": "bts:StageIVA" }, { "@id": "bts:StageIVB" }, { "@id": "bts:StageIVC" }, { "@id": "bts:StageTis" }, { "@id": "bts:StageX" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "AJCC Clinical Stage", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AJCCClinicalT", "@type": "rdfs:Class", "rdfs:comment": "Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment.", "rdfs:label": "AJCCClinicalT", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:T0" }, { "@id": "bts:T1" }, { "@id": "bts:T1a" }, { "@id": "bts:T1a1" }, { "@id": "bts:T1a2" }, { "@id": "bts:T1b" }, { "@id": "bts:T1b1" }, { "@id": "bts:T1b2" }, { "@id": "bts:T1c" }, { "@id": "bts:T1mi" }, { "@id": "bts:T2" }, { "@id": "bts:T2a" }, { "@id": "bts:T2a1" }, { "@id": "bts:T2a2" }, { "@id": "bts:T2b" }, { "@id": "bts:T2c" }, { "@id": "bts:T2d" }, { "@id": "bts:T3" }, { "@id": "bts:T3a" }, { "@id": "bts:T3b" }, { "@id": "bts:T3c" }, { "@id": "bts:T3d" }, { "@id": "bts:T4" }, { "@id": "bts:T4a" }, { "@id": "bts:T4b" }, { "@id": "bts:T4c" }, { "@id": "bts:T4d" }, { "@id": "bts:T4e" }, { "@id": "bts:TX" }, { "@id": "bts:Ta" }, { "@id": "bts:Tis" }, { "@id": "bts:Tis(DCIS)" }, { "@id": "bts:Tis(LCIS)" }, { "@id": "bts:Tis(Paget's)" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "AJCC Clinical T", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AJCCPathologicM", "@type": "rdfs:Class", "rdfs:comment": "Code to represent the defined absence or presence of distant spread or metastases (M) to locations via vascular channels or lymphatics beyond the regional lymph nodes, using criteria established by the American Joint Committee on Cancer (AJCC).", "rdfs:label": "AJCCPathologicM", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:M0" }, { "@id": "bts:M1" }, { "@id": "bts:M1a" }, { "@id": "bts:M1b" }, { "@id": "bts:M1c" }, { "@id": "bts:MX" }, { "@id": "bts:CM0(i+)" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "AJCC Pathologic M", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AJCCPathologicN", "@type": "rdfs:Class", "rdfs:comment": "The codes that represent the stage of cancer based on the nodes present (N stage) according to criteria based on multiple editions of the AJCC's Cancer Staging Manual.", "rdfs:label": "AJCCPathologicN", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], 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"@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:OvarianCapsuleIntact" }, { "@id": "bts:OvarianCapsuleRuptured" }, { "@id": "bts:OvarianCapsuleFragmented" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Ovarian Specimen Status", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:OvarianSurfaceInvolvement", "@type": "rdfs:Class", "rdfs:comment": "The text term that describes whether the surface tissue (outer boundary) of the ovary shows evidence of involvement or presence of cancer.", "rdfs:label": "OvarianSurfaceInvolvement", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Absent" }, { "@id": "bts:Present" }, { "@id": "bts:Indeterminate" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Ovarian Surface Involvement", 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The primary and secondary Gleason pattern grades are combined to determine the patient's Gleason grade group, which is used to determine the aggresiveness of prostate cancer. Note that this grade describes the entire prostatectomy specimen and is not specific to the sample used for sequencing.", "rdfs:label": "PrimaryGleasonGrade", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Pattern1" }, { "@id": "bts:Pattern2" }, { "@id": "bts:Pattern3" }, { "@id": "bts:Pattern4" }, { "@id": "bts:Pattern5" } ], "sms:displayName": "Primary Gleason Grade", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SecondaryGleasonGrade", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the secondary Gleason score, which describes the pattern of cells making up the second largest area of the tumor. The primary and secondary Gleason pattern grades are combined to determine the patient's Gleason grade group, which is used to determine the aggresiveness of prostate cancer. Note that this grade describes the entire prostatectomy specimen and is not specific to the sample used for sequencing.", "rdfs:label": "SecondaryGleasonGrade", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Pattern1" }, { "@id": "bts:Pattern2" }, { "@id": "bts:Pattern3" }, { "@id": "bts:Pattern4" }, { "@id": "bts:Pattern5" } ], "sms:displayName": "Secondary Gleason Grade", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SupratentorialLocalization", "@type": "rdfs:Class", "rdfs:comment": "Text term to specify the location of the supratentorial tumor.", "rdfs:label": "SupratentorialLocalization", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:CerebralCortex" }, { "@id": "bts:DeepGray" }, { "@id": "bts:SpinalCord" }, { "@id": "bts:WhiteMatter" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Supratentorial Localization", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:TumorDepth", "@type": "rdfs:Class", "rdfs:comment": "Numeric value that represents the depth of tumor invasion, measured in millimeters (mm).", "rdfs:label": "TumorDepth", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Tumor Depth", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:WHOCNSGrade", "@type": "rdfs:Class", "rdfs:comment": "WHO CNS Grade", "rdfs:label": "WHOCNSGrade", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:GradeI" }, { "@id": "bts:GradeII" }, { "@id": "bts:GradeIII" }, { "@id": "bts:GradeIV" }, { "@id": "bts:GradeNotAssigned" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "WHO CNS Grade", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:WHONTEGrade", "@type": "rdfs:Class", "rdfs:comment": "WHO NTE Grade", "rdfs:label": "WHONTEGrade", "rdfs:subClassOf": [ { "@id": "bts:Diagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:G1" }, { "@id": "bts:G2" }, { "@id": "bts:G3" }, { "@id": "bts:GX" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "WHO NTE Grade", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:AAChange", "@type": "rdfs:Class", "rdfs:comment": "Alphanumeric value used to describe the amino acid change for a specific genetic variant. Example: R116Q. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "AAChange", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "AA Change", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Antigen", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe an antigen included in molecular testing. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "Antigen", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:BCL6" }, { "@id": "bts:CA-125" }, { "@id": "bts:CA19-9" }, { "@id": "bts:CCND1" }, { "@id": "bts:CD10" }, { "@id": "bts:CD117" }, { "@id": "bts:CD138" }, { "@id": "bts:CD14" }, { "@id": "bts:CD15" }, { "@id": "bts:CD19" }, { "@id": "bts:CD20" }, { "@id": "bts:CD22" }, { "@id": "bts:CD23" }, { "@id": "bts:CD25" }, { "@id": "bts:CD3" }, { "@id": "bts:CD30" }, { "@id": "bts:CD33" }, { "@id": "bts:CD34" }, { "@id": "bts:CD45" }, { "@id": "bts:CD5" }, { "@id": "bts:CD56" }, { "@id": "bts:CD7" }, { "@id": "bts:CD79A" }, { "@id": "bts:CEA" }, { "@id": "bts:HLA-DR" }, { "@id": "bts:Mesothelin" }, { "@id": "bts:NSE" }, { "@id": "bts:SquamousCellCarcinomaAntigen" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Antigen", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ClinicalBiospecimenType", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the biological material used for testing, diagnostic, treatment or research purposes. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "ClinicalBiospecimenType", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Blood" }, { "@id": "bts:BoneMarrow" }, { "@id": "bts:BuccalMucosa" }, { "@id": "bts:BuffyCoat" }, { "@id": "bts:CerebrospinalFluid" }, { "@id": "bts:ConnectiveTissue" }, { "@id": "bts:EmbryonicFluid" }, { "@id": "bts:EmbryonicTissue" }, { "@id": "bts:Feces" }, { "@id": "bts:Granulocyte" }, { "@id": "bts:MuscleTissue" }, { "@id": "bts:NerveTissue" }, { "@id": "bts:PeritonealFluid" }, { "@id": "bts:Plasma" }, { "@id": "bts:PleuralFluid" }, { "@id": "bts:Saliva" }, { "@id": "bts:Serum" }, { "@id": "bts:Skin" }, { "@id": "bts:SoftTissue" }, { "@id": "bts:TissueNOS" }, { "@id": "bts:UninvolvedTissueNOS" }, { "@id": "bts:Urine" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Clinical Biospecimen Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BloodTestNormalRangeUpper", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the upper limit of the normal range used to describe a healthy individual at the institution where the test was completed.", "rdfs:label": "BloodTestNormalRangeUpper", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Blood Test Normal Range Upper", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BloodTestNormalRangeLower", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the lower limit of the normal range used to describe a healthy individual at the institution where the test was completed.", "rdfs:label": "BloodTestNormalRangeLower", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Blood Test Normal Range Lower", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CellCount", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the number of cells used for molecular testing. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "CellCount", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Cell Count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Chromosome", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe a chromosome targeted or included in molecular testing. If a specific genetic variant is being reported, this property can be used to capture the chromosome where that variant is located. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "Chromosome", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Chr1" }, { "@id": "bts:Chr2" }, { "@id": "bts:Chr3" }, { "@id": "bts:Chr4" }, { "@id": "bts:Chr5" }, { "@id": "bts:Chr6" }, { "@id": "bts:Chr7" }, { "@id": "bts:Chr8" }, { "@id": "bts:Chr9" }, { "@id": "bts:Chr10" }, { "@id": "bts:Chr11" }, { "@id": "bts:Chr12" }, { "@id": "bts:Chr13" }, { "@id": "bts:Chr14" }, { "@id": "bts:Chr15" }, { "@id": "bts:Chr16" }, { "@id": "bts:Chr17" }, { "@id": "bts:Chr18" }, { "@id": "bts:Chr19" }, { "@id": "bts:Chr20" }, { "@id": "bts:Chr21" }, { "@id": "bts:Chr22" }, { "@id": "bts:Chr23" }, { "@id": "bts:ChrM" }, { "@id": "bts:ChrX" }, { "@id": "bts:ChrY" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Chromosome", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Clonality", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe whether a genomic variant is related by descent from a single progenitor cell. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "Clonality", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Clonal" }, { "@id": "bts:Non-clonal" } ], "sms:displayName": "Clonality", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CopyNumber", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the number of times a section of the genome is repeated or copied within an insertion, duplication or deletion variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "CopyNumber", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Copy Number", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Cytoband", "@type": "rdfs:Class", "rdfs:comment": "Alphanumeric value used to describe the cytoband or chromosomal location targeted or included in molecular analysis. If a specific genetic variant is being reported, this property can be used to capture the cytoband where the variant is located. Format: [chromosome][chromosome arm].[band+sub-bands]. Example: 17p13.1. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "Cytoband", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Cytoband", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Exon", "@type": "rdfs:Class", "rdfs:comment": "Exon number targeted or included in a molecular analysis. If a specific genetic variant is being reported, this property can be used to capture the exon where that variant is located. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "Exon", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Exon", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HistoneFamily", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the family, or classification of a group of basic proteins found in chromatin, called histones.", "rdfs:label": "HistoneFamily", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:H1" }, { "@id": "bts:H2A" }, { "@id": "bts:H2B" }, { "@id": "bts:H3" }, { "@id": "bts:H4" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Histone Family", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HistoneVariant", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe a specific histone variants, which are proteins that substitute for the core canonical histones.", "rdfs:label": "HistoneVariant", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:CENP-A" }, { "@id": "bts:H2A-Bbd" }, { "@id": "bts:H2A.X" }, { "@id": "bts:H2A.Z" }, { "@id": "bts:H2A.Z.1" }, { "@id": "bts:H2A.Z.2" }, { "@id": "bts:H2A.Z.2.2" }, { "@id": "bts:H3.1" }, { "@id": "bts:H3.2" }, { "@id": "bts:H3.3" }, { "@id": "bts:H3.5" }, { "@id": "bts:H3.X" }, { "@id": "bts:H3.Y" }, { "@id": "bts:H3t(H3.4)" }, { "@id": "bts:MH2A" }, { "@id": "bts:MH2A.1" }, { "@id": "bts:MH2A.2" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Histone Variant", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Intron", "@type": "rdfs:Class", "rdfs:comment": "Intron number targeted or included in molecular analysis. If a specific genetic variant is being reported, this property can be used to capture the intron where that variant is located.", "rdfs:label": "Intron", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Intron", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LaboratoryTest", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the medical testing used to diagnose, treat or further understand a patient's disease.", "rdfs:label": "LaboratoryTest", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:AbsoluteNeutrophil" }, { "@id": "bts:Albumin" }, { "@id": "bts:AlphaFetoprotein" }, { "@id": "bts:B-cellgenotyping" }, { "@id": "bts:Basophil" }, { "@id": "bts:Beta2Microglobulin" }, { "@id": "bts:BloodUreaNitrogen" }, { "@id": "bts:C-ReactiveProtein" }, { "@id": "bts:Calcium" }, { "@id": "bts:Cellularity" }, { "@id": "bts:CirculatingTumorCells" }, { "@id": "bts:Creatinine" }, { "@id": "bts:Eosinophil" }, { "@id": "bts:Epstein-BarrVirus" }, { "@id": "bts:Glucose" }, { "@id": "bts:Hematocrit" }, { "@id": "bts:Hemoglobin" }, { "@id": "bts:HPV-E6/E7" }, { "@id": "bts:HumanChorionicGonadotropin" }, { "@id": "bts:HumanPapillomavirus" }, { "@id": "bts:ImmunoglobulinA" }, { "@id": "bts:ImmunoglobulinG" }, { "@id": "bts:ImmunoglobulinM" }, { "@id": "bts:LactateDehydrogenase" }, { "@id": "bts:Leukocytes" }, { "@id": "bts:LuteinizingHormone" }, { "@id": "bts:Lymphoblasts" }, { "@id": "bts:Lymphocytes" }, { "@id": "bts:MProtein" }, { "@id": "bts:Metamyelocytes" }, { "@id": "bts:Myeloblasts" }, { "@id": "bts:Myelocytes" }, { "@id": "bts:NeutrophilBands" }, { "@id": "bts:Platelets" }, { "@id": "bts:Prolymphocytes" }, { "@id": "bts:Promonocytes" }, { "@id": "bts:Promyelocytes" }, { "@id": "bts:SegmentedNeutrophil" }, { "@id": "bts:SerumFreeImmunoglobulinLightChain" }, { "@id": "bts:Kappa" }, { "@id": "bts:Lambda" }, { "@id": "bts:NOS" }, { "@id": "bts:Testosterone" }, { "@id": "bts:TotalBilirubin" }, { "@id": "bts:TotalProtein" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Laboratory Test", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LociAbnormalCount", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the number of loci determined to be abnormal.", "rdfs:label": "LociAbnormalCount", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Loci Abnormal Count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LociCount", "@type": "rdfs:Class", "rdfs:comment": "Numeric value used to describe the number of loci tested.", "rdfs:label": "LociCount", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Loci Count", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Locus", "@type": "rdfs:Class", "rdfs:comment": "Alphanumeric value used to describe the locus of a specific genetic variant. Example: NM_001126114.", "rdfs:label": "Locus", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Locus", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MismatchRepairMutation", "@type": "rdfs:Class", "rdfs:comment": "The yes/no/unknown indicator used to describe whether the mutation included in molecular testing was known to have an affect on the mismatch repair process. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "MismatchRepairMutation", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Mismatch Repair Mutation", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MolecularConsequence", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the molecular consequence of genetic variation. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "MolecularConsequence", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:3PrimeUTRVariant" }, { "@id": "bts:5PrimeUTRVariant" }, { "@id": "bts:CodingSequenceVariant" }, { "@id": "bts:DownstreamGeneVariant" }, { "@id": "bts:FeatureElongation" }, { "@id": "bts:FeatureTruncation" }, { "@id": "bts:FrameshiftVariant" }, { "@id": "bts:IncompleteTerminalCodonVariant" }, { "@id": "bts:InframeDeletion" }, { "@id": "bts:InframeInsertion" }, { "@id": "bts:IntergenicVariant" }, { "@id": "bts:IntronVariant" }, { "@id": "bts:MaturemiRNAVariant" }, { "@id": "bts:MissenseVariant" }, { "@id": "bts:NMDTranscriptVariant" }, { "@id": "bts:Non-codingTranscriptExonVariant" }, { "@id": "bts:Non-codingTranscriptVariant" }, { "@id": "bts:ProteinAlteringVariant" }, { "@id": "bts:RegulatoryRegionAblation" }, { "@id": "bts:RegulatoryRegionAmplification" }, { "@id": "bts:RegulatoryRegionVariant" }, { "@id": "bts:SpliceAcceptorVariant" }, { "@id": "bts:SpliceDonorVariant" }, { "@id": "bts:SpliceRegionVariant" }, { "@id": "bts:StartLost" }, { "@id": "bts:StopGain" }, { "@id": "bts:StopLost" }, { "@id": "bts:StopRetainedVariant" }, { "@id": "bts:SynonymousVariant" }, { "@id": "bts:TFBindingSiteVariant" }, { "@id": "bts:TFBSAblation" }, { "@id": "bts:TFBSAmplification" }, { "@id": "bts:TranscriptAblation" }, { "@id": "bts:TranscriptAmplification" }, { "@id": "bts:UpstreamGeneVariant" } ], "sms:displayName": "Molecular Consequence", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Pathogenicity", "@type": "rdfs:Class", "rdfs:comment": "The text used to describe a variant's level of involvement in the cause of the patient's disease according to the standards outlined by the American College of Medical Genetics and Genomics (ACMG).", "rdfs:label": "Pathogenicity", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Benign" }, { "@id": "bts:LikelyBenign" }, { "@id": "bts:LikelyPathogenic" }, { "@id": "bts:Pathogenic" }, { "@id": "bts:UncertainSignificance" } ], "sms:displayName": "Pathogenicity", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Ploidy", "@type": "rdfs:Class", "rdfs:comment": "Text term used to describe the number of sets of homologous chromosomes.", "rdfs:label": "Ploidy", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Aneuploid" }, { "@id": "bts:Diploid" }, { "@id": "bts:Hyperdiploid" }, { "@id": "bts:Hypodiploid" }, { "@id": "bts:NearDiploid" }, { "@id": "bts:Tetraploid" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Ploidy", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SecondExon", "@type": "rdfs:Class", "rdfs:comment": "The second exon number involved in molecular variation. If a specific genetic variant is being reported, this property can be used to capture the second exon where that variant is located. This property is typically used for a translocation where two different locations are involved in the variation.", "rdfs:label": "SecondExon", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Second Exon", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SecondGeneSymbol", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe a secondary gene targeted or included in molecular analysis. For rearrangements, this is should represent the location of the variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "SecondGeneSymbol", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Second Gene Symbol", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SpecializedMolecularTest", "@type": "rdfs:Class", "rdfs:comment": "Text term used to describe a specific test that is not covered in the list of molecular analysis methods. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "SpecializedMolecularTest", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Specialized Molecular Test", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:TestAnalyteType", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the type of analyte used for molecular testing. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "TestAnalyteType", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:DNA" }, { "@id": "bts:MRNA" }, { "@id": "bts:MiRNA" }, { "@id": "bts:ProteinAnalyte" }, { "@id": "bts:TotalRNA" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Test Analyte Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:TestUnits", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the units of the test value for a molecular test. This property is used in conjunction with test_value. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "TestUnits", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Test Units", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:TestValue", "@type": "rdfs:Class", "rdfs:comment": "The text term or numeric value used to describe a specific result of a molecular test. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here", "rdfs:label": "TestValue", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Test Value", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Transcript", "@type": "rdfs:Class", "rdfs:comment": "Alphanumeric value used to describe the transcript of a specific genetic variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "Transcript", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Transcript", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:VariantOrigin", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the biological origin of a specific genetic variant. Note: This node is meant to capture molecular tests that were completed clinically for the participant and only includes data from diagnostic array that was completed prior to research sequencing was done. Do not include data related to research assay outputs here.", "rdfs:label": "VariantOrigin", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Germline" }, { "@id": "bts:Somatic" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Variant Origin", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:VariantType", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the type of genetic variation.", "rdfs:label": "VariantType", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Alleles" }, { "@id": "bts:Amplification" }, { "@id": "bts:Chrimerism" }, { "@id": "bts:Conversion" }, { "@id": "bts:Deletion" }, { "@id": "bts:Deletion-Insertion" }, { "@id": "bts:Duplication" }, { "@id": "bts:Extension" }, { "@id": "bts:Gain" }, { "@id": "bts:Hypermethylation" }, { "@id": "bts:Insertion" }, { "@id": "bts:Inversion" }, { "@id": "bts:Loss" }, { "@id": "bts:Methylation" }, { "@id": "bts:Mosaicism" }, { "@id": "bts:Other" }, { "@id": "bts:PartialMethylation" }, { "@id": "bts:Rearrangement" }, { "@id": "bts:RepeatedSequences" }, { "@id": "bts:Splice" }, { "@id": "bts:Substitution" }, { "@id": "bts:Translocation" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Variant Type", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Zygosity", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the zygosity of a specific genetic variant.", "rdfs:label": "Zygosity", "rdfs:subClassOf": [ { "@id": "bts:MolecularTest" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Heterozygous" }, { "@id": "bts:Hemizygous" }, { "@id": "bts:Homozygous" }, { "@id": "bts:Nullizygous" }, { "@id": "bts:Unknown" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Zygosity", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:SourceHTANBiospecimenID", "@type": "rdfs:Class", "rdfs:comment": "This is the HTAN ID that may have been assigned to the biospecimen at the site of biospecimen origin (e.g. BU).", "rdfs:label": "SourceHTANBiospecimenID", "rdfs:subClassOf": [ { "@id": "bts:Biosample" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Source HTAN Biospecimen ID", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CollectionDaysfromIndex", "@type": "rdfs:Class", "rdfs:comment": "Number of days from the research participant's index date that the biospecimen was obtained. If not applicable please enter 'Not Applicable'", "rdfs:label": "CollectionDaysfromIndex", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Collection Days from Index", "sms:required": "sms:true", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:AdjacentBiospecimenIDs", "@type": "rdfs:Class", "rdfs:comment": "List of HTAN Identifiers (separated by commas) of adjacent biospecimens cut from the same sample; for example HTA3_3000_3, HTA3_3000_4, ...", "rdfs:label": "AdjacentBiospecimenIDs", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Adjacent Biospecimen IDs", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BiospecimenType", "@type": "rdfs:Class", "rdfs:comment": "Biospecimen Type", "rdfs:label": "BiospecimenType", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:TissueBiospecimenType" }, { "@id": "bts:BloodBiospecimenType" }, { "@id": "bts:AnalyteBiospecimenType" }, { "@id": "bts:MouthRinseBiospecimenType" }, { "@id": "bts:StoolBiospecimenType" }, { "@id": "bts:UrineBiospecimenType" }, { "@id": "bts:AscitesBiospecimenType" }, { "@id": "bts:SputumBiospecimenType" }, { "@id": "bts:FluidsBiospecimenType" }, { "@id": "bts:BoneMarrowBiospecimenType" }, { "@id": "bts:CellsBiospecimenType" } ], "sms:displayName": "Biospecimen Type", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:AcquisitionMethodType", "@type": "rdfs:Class", "rdfs:comment": "Records the method of acquisition or source for the specimen under consideration.", "rdfs:label": "AcquisitionMethodType", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Autopsy" }, { "@id": "bts:Biopsy" }, { "@id": "bts:FineNeedleAspirate" }, { "@id": "bts:SurgicalResection" }, { "@id": "bts:PunchBiopsy" }, { "@id": "bts:ShaveBiopsy" }, { "@id": "bts:Excision" }, { "@id": "bts:Re-excision" }, { "@id": "bts:SentinelNodeBiopsy" }, { "@id": "bts:Lymphadenectomy-RegionalNodes" }, { "@id": "bts:OtherAcquisitionMethod" }, { "@id": "bts:Noninducedsputum" }, { "@id": "bts:Inducedsputum" }, { "@id": "bts:BAL(bronchialalveolarlavage)" }, { "@id": "bts:Cytobrush" }, { "@id": "bts:Blooddraw" }, { "@id": "bts:Fluidcollection" }, { "@id": "bts:Forcepsbiopsy" }, { "@id": "bts:Coreneedlebiopsy" }, { "@id": "bts:Endoscopicbiopsy" }, { "@id": "bts:Notspecified" } ], "sms:displayName": "Acquisition Method Type", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:FixativeType", "@type": "rdfs:Class", "rdfs:comment": "Text term to identify the type of fixative used to preserve a tissue specimen", "rdfs:label": "FixativeType", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Acetone" }, { "@id": "bts:Alcohol" }, { "@id": "bts:Formalin" }, { "@id": "bts:Glutaraldehyde" }, { "@id": "bts:OCTmedia" }, { "@id": "bts:RNAlater" }, { "@id": "bts:Saline" }, { "@id": "bts:95%Ethanol" }, { "@id": "bts:Dimidoester" }, { "@id": "bts:Carbodiimide" }, { "@id": "bts:Dimethylacetamide" }, { "@id": "bts:Para-benzoquinone" }, { "@id": "bts:PAXgenetissue" }, { "@id": "bts:TCLlysisbuffer" }, { "@id": "bts:NP40lysisbuffer" }, { "@id": "bts:Methacarn" }, { "@id": "bts:Cryo-store" }, { "@id": "bts:Carnoy'sFixative" }, { "@id": "bts:Polaxamer" }, { "@id": "bts:Other" }, { "@id": "bts:None" }, { "@id": "bts:Unknown" }, { "@id": "bts:Unfixed" } ], "sms:displayName": "Fixative Type", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:StorageMethod", "@type": "rdfs:Class", "rdfs:comment": "The method by which a biomaterial was stored after preservation or before another protocol was used.", "rdfs:label": "StorageMethod", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Ambienttemperature" }, { "@id": "bts:Cutslide" }, { "@id": "bts:Fresh" }, { "@id": "bts:Frozenat-20C" }, { "@id": "bts:Frozenat-70C" }, { "@id": "bts:Frozenat-80C" }, { "@id": "bts:Frozenat-150C" }, { "@id": "bts:Frozeninliquidnitrogen" }, { "@id": "bts:Frozeninvaporphase" }, { "@id": "bts:Paraffinblock" }, { "@id": "bts:RNAlaterat4C" }, { "@id": "bts:RNAlaterat25C" }, { "@id": "bts:RNAlaterat-20C" }, { "@id": "bts:Refrigeratedat4degrees" }, { "@id": "bts:Refrigeratedvacuumchamber" }, { "@id": "bts:4Cinvacuumchamber" }, { "@id": "bts:Desiccantat4C" }, { "@id": "bts:NotApplicable" }, { "@id": "bts:Unknown" } ], "sms:displayName": "Storage Method", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:ProcessingDaysfromIndex", "@type": "rdfs:Class", "rdfs:comment": "Number of days from the research participant's index date that the biospecimen was processed. If not applicable please enter 'Not Applicable'", "rdfs:label": "ProcessingDaysfromIndex", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Processing Days from Index", "sms:required": "sms:true", "sms:validationRules": [ "regex match \\d+$|Not\\sApplicable$|unknown$" ] }, { "@id": "bts:ProtocolLink", "@type": "rdfs:Class", "rdfs:comment": "Protocols.io ID or DOI link to a free/open protocol resource describing in detail the assay protocol (e.g. surface markers used in Smart-seq, dissociation duration, lot/batch numbers for key reagents such as primers, sequencing reagent kits, etc.) or the protocol by which the sample was obtained or generated.", "rdfs:label": "ProtocolLink", "rdfs:subClassOf": [ { "@id": "bts:InformationContentEntity" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Protocol Link", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:SiteDataSource", "@type": "rdfs:Class", "rdfs:comment": "Text to identify the data source for the specimen/sample from within the HTAN center, if applicable. Any identifier used within the center to identify data sources. No PHI/PII is allowed.", "rdfs:label": "SiteDataSource", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Site Data Source", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CollectionMedia", "@type": "rdfs:Class", "rdfs:comment": "Material Specimen is collected into post procedure", "rdfs:label": "CollectionMedia", "rdfs:subClassOf": [ { "@id": "bts:Biospecimen" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:DMEM" }, { "@id": "bts:DMEM+Serum" }, { "@id": "bts:RPMI" }, { "@id": "bts:RPMI+Serum" }, { "@id": "bts:PBS" }, { "@id": "bts:PBS+Serum" }, { "@id": "bts:None" } ], "sms:displayName": "Collection Media", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MountingMedium", "@type": "rdfs:Class", "rdfs:comment": "The solution in which the specimen is embedded, generally under a cover glass. 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See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", "rdfs:label": "WorkingDistanceUnit", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Cm" }, { "@id": "bts:Mm" }, { "@id": "bts:Μm" }, { "@id": "bts:Nm" }, { "@id": "bts:Å" } ], "sms:displayName": "WorkingDistanceUnit", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Immersion", "@type": "rdfs:Class", "rdfs:comment": "Immersion medium", "rdfs:label": "Immersion", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Air" }, { "@id": "bts:Oil" }, { "@id": "bts:Water" }, { "@id": "bts:Other" } ], "sms:displayName": "Immersion", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Pyramid", "@type": "rdfs:Class", "rdfs:comment": "Does data file contain pyramid of images", "rdfs:label": "Pyramid", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" } ], "sms:displayName": "Pyramid", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:Zstack", "@type": "rdfs:Class", "rdfs:comment": "Does data file contain a Z-stack of images", "rdfs:label": "Zstack", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" } ], "sms:displayName": "Zstack", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:Tseries", "@type": "rdfs:Class", "rdfs:comment": "Does data file contain a time-series of images", "rdfs:label": "Tseries", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No" } ], "sms:displayName": "Tseries", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:PassedQC", "@type": "rdfs:Class", "rdfs:comment": "Did all channels pass QC (if not add free text Comment)", "rdfs:label": "PassedQC", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Yes" }, { "@id": "bts:No-ChannelsQC" } ], "sms:displayName": "Passed QC", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:FOVnumber", "@type": "rdfs:Class", "rdfs:comment": "Index of FOV (as it pertains to its sequence order). Integer >= 1", "rdfs:label": "FOVnumber", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "FOV number", "sms:required": "sms:false", "sms:validationRules": [ "num" ] }, { "@id": "bts:FOVX", "@type": "rdfs:Class", "rdfs:comment": "Field of view X dimension. Floating point", "rdfs:label": "FOVX", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "FOVX", "sms:required": "sms:false", "sms:requiresDependency": [ { "@id": "bts:FOVXUnit" } ], "sms:validationRules": [ "num" ] }, { "@id": "bts:FOVXUnit", "@type": "rdfs:Class", "rdfs:comment": "Field of view X dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", "rdfs:label": "FOVXUnit", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Cm" }, { "@id": "bts:Mm" }, { "@id": "bts:Μm" }, { "@id": "bts:Nm" }, { "@id": "bts:Å" } ], "sms:displayName": "FOVXUnit", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:FOVY", "@type": "rdfs:Class", "rdfs:comment": "Field of view Y dimension. Floating point value", "rdfs:label": "FOVY", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "FOVY", "sms:required": "sms:false", "sms:requiresDependency": [ { "@id": "bts:FOVYUnit" } ], "sms:validationRules": [ "num" ] }, { "@id": "bts:FOVYUnit", "@type": "rdfs:Class", "rdfs:comment": "Field of view Y dimension units. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", "rdfs:label": "FOVYUnit", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Cm" }, { "@id": "bts:Mm" }, { "@id": "bts:Μm" }, { "@id": "bts:Nm" }, { "@id": "bts:Å" } ], "sms:displayName": "FOVYUnit", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:FrameAveraging", "@type": "rdfs:Class", "rdfs:comment": "Number of frames averaged together (if no averaging, set to 1). Integer >= 1", "rdfs:label": "FrameAveraging", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Frame Averaging", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ImageID", "@type": "rdfs:Class", "rdfs:comment": "Unique internal image identifier. eg \"Image:0\". (To be extracted from OME-XML)", "rdfs:label": "ImageID", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Image ID", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:DimensionOrder", "@type": "rdfs:Class", "rdfs:comment": "The order in which the individual planes of data are interleaved.", "rdfs:label": "DimensionOrder", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:XYZCT" }, { "@id": "bts:XYZTC" }, { "@id": "bts:XYCTZ" }, { "@id": "bts:XYCZT" }, { "@id": "bts:XYTZC" }, { "@id": "bts:ZYX" } ], "sms:displayName": "DimensionOrder", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:PhysicalSizeX", "@type": "rdfs:Class", "rdfs:comment": "Physical size (X-dimension) of a pixel. Units are set by PhysicalSizeXUnit. Floating point value > 0.", "rdfs:label": "PhysicalSizeX", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "PhysicalSizeX", "sms:required": "sms:true", "sms:requiresDependency": [ { "@id": "bts:PhysicalSizeXUnit" } ], "sms:validationRules": [] }, { "@id": "bts:PhysicalSizeXUnit", "@type": "rdfs:Class", "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", "rdfs:label": "PhysicalSizeXUnit", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Cm" }, { "@id": "bts:Mm" }, { "@id": "bts:Μm" }, { "@id": "bts:Nm" }, { "@id": "bts:Å" } ], "sms:displayName": "PhysicalSizeXUnit", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:PhysicalSizeY", "@type": "rdfs:Class", "rdfs:comment": "Physical size (Y-dimension) of a pixel. Units are set by PhysicalSizeYUnit. Floating point value > 0.", "rdfs:label": "PhysicalSizeY", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "PhysicalSizeY", "sms:required": "sms:true", "sms:requiresDependency": [ { "@id": "bts:PhysicalSizeYUnit" } ], "sms:validationRules": [] }, { "@id": "bts:PhysicalSizeYUnit", "@type": "rdfs:Class", "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", "rdfs:label": "PhysicalSizeYUnit", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Cm" }, { "@id": "bts:Mm" }, { "@id": "bts:Μm" }, { "@id": "bts:Nm" }, { "@id": "bts:Å" } ], "sms:displayName": "PhysicalSizeYUnit", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:PhysicalSizeZ", "@type": "rdfs:Class", "rdfs:comment": "Physical size (Z-dimension) of a pixel. Units are set by PhysicalSizeZUnit. Floating point value > 0.", "rdfs:label": "PhysicalSizeZ", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "PhysicalSizeZ", "sms:required": "sms:true", "sms:requiresDependency": [ { "@id": "bts:PhysicalSizeZUnit" } ], "sms:validationRules": [] }, { "@id": "bts:PhysicalSizeZUnit", "@type": "rdfs:Class", "rdfs:comment": "The units of the physical size of a pixel. See OME enumeration of allowed values for the UnitsLength attribute -- default: microns (um)", "rdfs:label": "PhysicalSizeZUnit", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Cm" }, { "@id": "bts:Mm" }, { "@id": "bts:Μm" }, { "@id": "bts:Nm" }, { "@id": "bts:Å" } ], "sms:displayName": "PhysicalSizeZUnit", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:PixelsBigEndian", "@type": "rdfs:Class", "rdfs:comment": "Boolean (True/False)", "rdfs:label": "PixelsBigEndian", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:True" }, { "@id": "bts:False" } ], "sms:displayName": "Pixels BigEndian", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:PlaneCount", "@type": "rdfs:Class", "rdfs:comment": "Number of Z-planes (not to be confused with downsampled \"pyramid\"). Integer >=1", "rdfs:label": "PlaneCount", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "PlaneCount", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:SizeC", "@type": "rdfs:Class", "rdfs:comment": "Number of channels. Integer >= 1", "rdfs:label": "SizeC", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "SizeC", "sms:required": "sms:true", "sms:validationRules": [ "int" ] }, { "@id": "bts:SizeT", "@type": "rdfs:Class", "rdfs:comment": "Number of time points. Integer >= 1", "rdfs:label": "SizeT", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "SizeT", "sms:required": "sms:true", "sms:validationRules": [ "int" ] }, { "@id": "bts:SizeX", "@type": "rdfs:Class", "rdfs:comment": "Size of image: X dimension (in pixels). Integer >= 1", "rdfs:label": "SizeX", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "SizeX", "sms:required": "sms:true", "sms:validationRules": [ "int" ] }, { "@id": "bts:SizeY", "@type": "rdfs:Class", "rdfs:comment": "Size of image: Y dimension (in pixels). Integer >= 1", "rdfs:label": "SizeY", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "SizeY", "sms:required": "sms:true", "sms:validationRules": [ "int" ] }, { "@id": "bts:SizeZ", "@type": "rdfs:Class", "rdfs:comment": "Size of image: Z dimension (in pixels). 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E.g. \"uint16\"", "rdfs:label": "PixelType", "rdfs:subClassOf": [ { "@id": "bts:Imaging" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Int8" }, { "@id": "bts:Int16" }, { "@id": "bts:Int32" }, { "@id": "bts:Uint8" }, { "@id": "bts:Uint16" }, { "@id": "bts:Uint32" }, { "@id": "bts:Float" }, { "@id": "bts:Double" }, { "@id": "bts:Bit" } ], "sms:displayName": "PixelType", "sms:required": "sms:true", "sms:validationRules": [] }, { "@id": "bts:MERFISHPositionsFile", "@type": "rdfs:Class", "rdfs:comment": "The positions file is an auxiliary MERFISH file that describes the location of bead positions in the assay.", "rdfs:label": "MERFISHPositionsFile", "rdfs:subClassOf": [ { "@id": "bts:Assay" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "MERFISH Positions File", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MERFISHCodebookFile", "@type": "rdfs:Class", "rdfs:comment": "The codebook is an auxiliary MERFISH file that describes how each grouping of bits is converted to a gene name.", "rdfs:label": "MERFISHCodebookFile", "rdfs:subClassOf": [ { "@id": "bts:Assay" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "MERFISH Codebook File", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ImagingLevel3Segmentation", "@type": "rdfs:Class", "rdfs:comment": "Object segmentations", "rdfs:label": "ImagingLevel3Segmentation", "rdfs:subClassOf": [ { "@id": "bts:Assay" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Imaging Level 3 Segmentation", "sms:required": "sms:false", "sms:requiresComponent": [ { "@id": "bts:ImagingLevel2" } ], "sms:requiresDependency": [ { "@id": "bts:Component" }, { "@id": "bts:Filename" }, { "@id": "bts:FileFormat" }, { "@id": "bts:HTANParentDataFileID" }, { "@id": "bts:HTANDataFileID" }, { "@id": "bts:ImagingSegmentationDataType" }, { "@id": 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"http://schema.biothings.io" }, "sms:displayName": "Number of Objects", "sms:required": "sms:true", "sms:validationRules": [ "int" ] }, { "@id": "bts:ImagingLevel3Image", "@type": "rdfs:Class", "rdfs:comment": "Quality controlled imaging data", "rdfs:label": "ImagingLevel3Image", "rdfs:subClassOf": [ { "@id": "bts:Assay" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Imaging Level 3 Image", "sms:required": "sms:false", "sms:requiresComponent": [ { "@id": "bts:ImagingLevel3Channels" }, { "@id": "bts:ImagingLevel2" } ], "sms:requiresDependency": [ { "@id": "bts:Component" }, { "@id": "bts:Filename" }, { "@id": "bts:FileFormat" }, { "@id": "bts:HTANParentBiospecimenID" }, { "@id": "bts:HTANParentDataFileID" }, { "@id": "bts:HTANParentChannelMetadataID" }, { "@id": "bts:HTANDataFileID" }, { "@id": "bts:ImagingAssayType" }, { "@id": "bts:ProtocolLink" }, { "@id": "bts:SoftwareandVersion" }, { "@id": "bts:Microscope" }, { "@id": "bts:Objective" }, { 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"sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Nothighschoolgraduate", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "Nothighschoolgraduate", "rdfs:subClassOf": [ { "@id": "bts:EducationLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Not high school graduate", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Somecollegeorassociatedegree", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "Somecollegeorassociatedegree", "rdfs:subClassOf": [ { "@id": "bts:EducationLevel" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Some college or associate degree", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Datanotavailable", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "Datanotavailable", "rdfs:subClassOf": [ { "@id": "bts:BreastCarcinomaDetectionMethodType" }, { "@id": "bts:InvasiveLobularBreastCarcinomaHistologicCategory" }, { "@id": "bts:BreastCancerGenomicTestPerformed" }, { "@id": "bts:MammaprintRiskGroup" }, { "@id": "bts:OncotypeRiskGroup" }, { "@id": "bts:MultifocalBreastCarcinomaPresentIndicator" }, { "@id": "bts:MulticentricBreastCarcinomaPresentIndicator" }, { "@id": "bts:OvarianCancerPlatinumStatus" }, { "@id": "bts:ModeofCancerDetection" }, { "@id": "bts:LungCancerDetectionMethodType" }, { "@id": "bts:PriorInvasiveBreastDisease" }, { "@id": "bts:BIRADSMammographyBreastDensityCategory" }, { "@id": "bts:OvarianCancerSurgicalOutcome" }, { "@id": "bts:ColorectalCancerDetectionMethodType" }, { "@id": "bts:BreastQuadrantSite" }, { "@id": "bts:BreastCancerAssessmentTests" }, { "@id": "bts:BreastImagingPerformedType" }, { "@id": "bts:EducationLevel" }, { "@id": "bts:OvarianCancerHistologicSubtype" }, { "@id": "bts:InvasiveDuctalBreastCarcinomaHistologicCategory" }, { "@id": "bts:MutationalSignatures" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Data not available", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ClinicalTier2", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "ClinicalTier2", "rdfs:subClassOf": [ { "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Clinical Tier 2", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MedicallyUnderservedArea-Yes", "@type": "rdfs:Class", "rdfs:comment": "Patient's zip code is in a medically underserved area", "rdfs:label": "MedicallyUnderservedArea-Yes", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" }, { "@id": "bts:MedicallyUnderservedArea" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Medically Underserved Area - Yes", "sms:required": "sms:false", "sms:requiresDependency": [ { "@id": "bts:MedicallyUnderservedScore" } ], "sms:validationRules": [] }, { "@id": "bts:MedicallyUnderservedArea-No", "@type": "rdfs:Class", "rdfs:comment": "Patient's zip code is not in a medically underserved area", "rdfs:label": "MedicallyUnderservedArea-No", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" }, { "@id": "bts:MedicallyUnderservedArea" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Medically Underserved Area - No", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MedicallyUnderservedArea-Unknown", "@type": "rdfs:Class", "rdfs:comment": "Insufficient data to look up the Medically Underserved Area value", "rdfs:label": "MedicallyUnderservedArea-Unknown", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" }, { "@id": "bts:MedicallyUnderservedArea" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Medically Underserved Area - Unknown", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:MedicallyUnderservedScore", "@type": "rdfs:Class", "rdfs:comment": "Index of Medical Underservice (IMU) score, a number between 0 and 100, where 0 represents completely underserved and 100 represents best served or least underserved. Use patient zip code to find the county the patient lives in by going to https://www.unitedstateszipcodes.org/. Enter the zip code in the main text field and use the asociated county on the right side of the result field. Go to data.hrsa.gov website and select Query Data. Pick the Medically Underserved Areas/Populations (MUA/P) data source in the step 1 menu and select View Data. Enter the name of the county (______ county) in the first \"Service Area\" column, adding the state in the 5th column may help direct you to the data. Enter the Index of Medical Underservice Score in the fourth column to one decimal place as the value.", "rdfs:label": "MedicallyUnderservedScore", "rdfs:subClassOf": [ { "@id": "bts:ClinicalTier2" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Medically Underserved Score", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:UrbanPopulation(population>50000)", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "UrbanPopulation(population>50000)", "rdfs:subClassOf": [ { "@id": "bts:RuralvsUrban" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Urban Population (population >50000)", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:UrbanCluster(population2500-50000)", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "UrbanCluster(population2500-50000)", "rdfs:subClassOf": [ { "@id": "bts:RuralvsUrban" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Urban Cluster (population 2500 - 50000)", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RuralPopulation(population<2500)", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "RuralPopulation(population<2500)", "rdfs:subClassOf": [ { "@id": "bts:RuralvsUrban" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Rural Population (population <2500)", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RelationshipGender", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the gender of the patient's relative with a history of cancer.", "rdfs:label": "RelationshipGender", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:Female" }, { "@id": "bts:Male" }, { "@id": "bts:Unknown" }, { "@id": "bts:Unspecified" }, { "@id": "bts:NotReported" } ], "sms:displayName": "Relationship Gender", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RelationshipAgeatDiagnosis", "@type": "rdfs:Class", "rdfs:comment": "The age (in years) when the patient's relative was first diagnosed.", "rdfs:label": "RelationshipAgeatDiagnosis", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Relationship Age at Diagnosis", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:RelationshipPrimaryDiagnosis", "@type": "rdfs:Class", "rdfs:comment": "The text term used to describe the malignant diagnosis of the patient's relative with a history of cancer.", "rdfs:label": "RelationshipPrimaryDiagnosis", "rdfs:subClassOf": [ { "@id": "bts:FamilyHistory" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "schema:rangeIncludes": [ { "@id": "bts:AdrenalGlandCancer" }, { "@id": "bts:BasalCellCancer" }, { "@id": "bts:BileDuctCancer" }, { "@id": "bts:BladderCancer" }, { "@id": "bts:BloodCancer" }, { "@id": "bts:BoneCancer" }, { "@id": "bts:BrainCancer" }, { "@id": "bts:BreastCancer" }, { "@id": "bts:Cancer" }, { "@id": "bts:CervicalCancer" }, { "@id": "bts:Chondrosarcoma" }, { "@id": "bts:CNSCancer" }, { "@id": "bts:ColorectalCancer" }, { "@id": "bts:EsophagealCancer" }, { "@id": "bts:EwingSarcoma" }, { "@id": "bts:GallbladderCancer" }, { "@id": "bts:GastricCancer" }, { "@id": "bts:Glioblastoma" }, { "@id": "bts:GynecologicCancer" }, { "@id": "bts:HeadandNeckCancer" }, { "@id": "bts:HematologicCancer" }, { "@id": "bts:KaposiSarcoma" }, { "@id": "bts:KidneyCancer" }, { "@id": "bts:LaryngealCancer" }, { "@id": "bts:Leukemia" }, { "@id": "bts:LiverCancer" }, { "@id": "bts:LungCancer" }, { "@id": "bts:LymphNodeCancer" }, { "@id": "bts:Lymphoma" }, { "@id": "bts:Melanoma" }, { "@id": "bts:Mesothelioma" }, { "@id": "bts:MultipleMyeloma" }, { "@id": "bts:Neuroblastoma" }, { "@id": 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"sms:validationRules": [] }, { "@id": "bts:BasalCellCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "BasalCellCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Basal Cell Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BileDuctCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "BileDuctCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Bile Duct Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BladderCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "BladderCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Bladder Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BloodCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "BloodCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Blood Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BoneCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "BoneCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Bone Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BrainCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "BrainCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Brain Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:BreastCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "BreastCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Breast Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Cancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "Cancer", "rdfs:subClassOf": [ { "@id": "bts:BreastBiopsyProcedureFindingType" }, { "@id": "bts:ColorectalPolypType" }, { "@id": "bts:RelationshipPrimaryDiagnosis" }, { "@id": "bts:Comorbidity" }, { "@id": "bts:RiskFactor" }, { "@id": "bts:PrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CervicalCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "CervicalCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Cervical Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Chondrosarcoma", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "Chondrosarcoma", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Chondrosarcoma", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:CNSCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "CNSCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "CNS Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:ColorectalCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "ColorectalCancer", "rdfs:subClassOf": [ { "@id": 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"rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Gallbladder Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:GastricCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "GastricCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Gastric Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Glioblastoma", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "Glioblastoma", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" }, { "@id": "bts:PrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Glioblastoma", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:GynecologicCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "GynecologicCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Gynecologic Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HeadandNeckCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "HeadandNeckCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Head and Neck Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:HematologicCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "HematologicCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Hematologic Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:KaposiSarcoma", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "KaposiSarcoma", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Kaposi Sarcoma", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:KidneyCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "KidneyCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Kidney Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:LaryngealCancer", "@type": "rdfs:Class", "rdfs:comment": "TBD", "rdfs:label": "LaryngealCancer", "rdfs:subClassOf": [ { "@id": "bts:RelationshipPrimaryDiagnosis" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, "sms:displayName": "Laryngeal Cancer", "sms:required": "sms:false", "sms:validationRules": [] }, { "@id": "bts:Leukemia", "@type": 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