### A Pluto.jl notebook ###
# v0.19.47

using Markdown
using InteractiveUtils

# This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error).
macro bind(def, element)
    quote
        local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end
        local el = $(esc(element))
        global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el)
        el
    end
end

# ╔═╡ df91c300-e907-4ccc-a575-036dd58ba358
begin
	using CitableBase, CitableCorpus, CitableText
	using Orthography, LatinOrthography

	using CitableTeiReaders
	using EditionBuilders
	
	using StatsBase
	using OrderedCollections
	
	using PlotlyJS
	

	using VectorAlignments
	
	using PlutoUI
	md"""*Unhide this cell to see the Julia environment*."""
end

# ╔═╡ b05ca334-a115-4f68-a11c-3ed27c03f413
TableOfContents()

# ╔═╡ 83ad9ce8-2c9a-11ef-2e53-ad978a4e6f59
md"""# Token frequency in Latin texts of Complutensian Bible"""

# ╔═╡ fd278ecc-89ef-4ede-b07b-0bb18377c3ea
@bind reloadtext Button("Reload glosses")

# ╔═╡ 21d5f438-69b6-410f-9139-87a0f2024463
md"""## Frequency plots"""

# ╔═╡ 8e254baf-35a0-4793-ae3e-4660927ce77d
md"""*Minimum num. occurrences to include*" $(@bind freqthresh Slider(1:50, show_value = true))"""

# ╔═╡ 56d83662-2a9b-441d-bb17-fdba83fdc403
md"""## Alignments"""

# ╔═╡ 10ef7bfa-f614-41a9-ab9c-aeac04b08f89
md"""*Number of terms to show*: $(@bind alignmax Slider(5:5:100, show_value=true))"""

# ╔═╡ 40f2817a-1aa0-4ee4-9683-6dbfa7b77b2b


# ╔═╡ bbeab184-f035-41eb-acea-7ed98274091d
 html"""
<br/><br/><br/><br/><br/>
<br/><br/><br/><br/><br/>
<br/><br/><br/><br/><br/>
"""

# ╔═╡ 274fd19a-de33-4e82-a38d-a40c4f5a93e1
md"""> # Behind the scenes"""

# ╔═╡ 46f5b6dd-63bb-4901-b9c3-3662bf8972bf
md"""> ## Vocab"""

# ╔═╡ 507f303e-5a46-40ba-aa47-d6aaa8e88aaf
md"""> ## Plotting"""

# ╔═╡ 6a25a972-2cbb-44db-8d01-ceabd4b49d15

"""Plot values against keys of ordereddict d
with PlotlyJS
"""
function plotordereddict(d; thresh = freqthresh)
	xsraw = keys(d) |> collect
	ysraw = values(d) |> collect

	ys = filter(y -> y >= thresh, ysraw)
	max = length(ys)
	xs = xsraw[1:max]

	graphlayout = Layout(title = "n-gram frequencies")
	plotted = scatter(x = xs, y = ys)
	
end

# ╔═╡ 9bc243a0-3204-4f75-a659-296d91137d55
md"""> ## Corpus"""

# ╔═╡ b3088be4-8fa6-4891-a78f-4f72f1137369
repo = dirname(pwd()) |> dirname

# ╔═╡ 4c330499-1e06-4ddb-be3d-63b6a660d374
md"""### Septuagint glosses"""

# ╔═╡ 9c6841b2-c621-4217-8e34-0852be2c2e38
septlatinxml = joinpath(repo, "editions", "septuagint_latin_genesis.xml")

# ╔═╡ cdf9b572-4c3f-43f0-9029-d7f447f70e1e
septlatinxmlcorpus = begin
	reloadtext
	readcitable(septlatinxml, CtsUrn("urn:cts:compnov:bible.genesis.sept_latin:"), TEIDivAb, FileReader)
end

# ╔═╡ 18647286-2a52-4c87-aa52-3ea4454f6280
lxxbldr = normalizedbuilder(; versionid = "lxxlatinnormed")

# ╔═╡ 49956c62-5827-4a60-97c7-1992a8de156e
septlatin = edited(lxxbldr, septlatinxmlcorpus)

# ╔═╡ a85a8f05-ea12-4a1f-a4c4-e02ebe48a3f2
lxxtkns = tokenize(septlatin, latin23())

# ╔═╡ 79020b86-4f0f-44be-a975-2b94dcdc1a29
lxxlextkns = filter(t -> tokencategory(t) isa LexicalToken, lxxtkns)

# ╔═╡ 35115290-c72e-4f5c-a77a-0b1a537c89d3
lxxfreqs = countmap(map(t -> CitableCorpus.text(passage(t)), lxxlextkns)) |> OrderedDict

# ╔═╡ b1147d34-02f4-4d0d-8d3d-2095224706ea
lxxsorted = sort(lxxfreqs; rev = true,  byvalue = true)

# ╔═╡ 55c471d6-6109-48f4-9d96-3335a759abfc
begin
	lxxlayout = Layout(title = "Septuagint glosses", height = 400, width = 600)
	Plot(plotordereddict(lxxsorted), lxxlayout)
end

# ╔═╡ d4e59085-5bb2-413a-9e26-4e016f699bb0
lxxvocab = keys(lxxsorted) |> collect

# ╔═╡ dff3748b-5a5e-4af9-81d0-bfaca39d0066
xsrc = keys(lxxsorted) |> collect

# ╔═╡ 113ca4a3-6dc8-476f-aca4-ff1c7d299405
plotordereddict(lxxsorted)

# ╔═╡ 263f3525-bb0e-4c95-ba52-3ed12ac503e6
md"""> ### Targum glosses"""

# ╔═╡ 6cdc559c-b62c-4540-ab47-d2b88ad18bae
targumlatinxml =  joinpath(repo, "editions", "targum_latin_genesis.xml")

# ╔═╡ 622ec8cd-69ad-4b82-9b0e-735daa9bf2f0
targbldr = normalizedbuilder(; versionid = "targumlatinnormed")

# ╔═╡ 62980cd7-925a-47ac-9c01-1bb11ef43cf5
targumlatinxmlcorpus = begin
	reloadtext
	readcitable(targumlatinxml, CtsUrn("urn:cts:compnov:bible.genesis.sept_latin:"), TEIDivAb, FileReader)
end

# ╔═╡ 04d141d6-7fc6-4b70-8a5c-610a573b53e4
targumlatin = edited(targbldr, targumlatinxmlcorpus)

# ╔═╡ 03d738c6-f2ff-43d1-b099-8a930c4412c0
targumtkns = tokenize(targumlatin, latin23())

# ╔═╡ 949b423f-9de5-4599-bca6-1b9d1f4eaa13
targumlextkns = filter(t -> tokencategory(t) isa LexicalToken, targumtkns)

# ╔═╡ 432dcc60-f33f-4596-96bd-8b91bb10726f
targumfreqs = countmap(map(t -> CitableCorpus.text(passage(t)), targumlextkns)) |> OrderedDict

# ╔═╡ 568d6e14-f97c-4dcb-9894-02fb046f92df
targumsorted = sort(targumfreqs; rev = true,  byvalue = true)

# ╔═╡ 61f9fb78-824c-4fe6-841b-6d69fe1b6003
begin
	targumlayout = Layout(title = "Targum glosses", height = 400, width = 600)
	Plot(plotordereddict(targumsorted), targumlayout)
end

# ╔═╡ a623f028-570c-48ab-a743-60e9e8309594
targvocab = keys(targumsorted) |> collect

# ╔═╡ 19b5c1c8-8eed-40ad-9869-7b23f822d959
md"""> ### Vulgate"""

# ╔═╡ f9e5aaa8-3311-4175-a47c-1af4b397f810
srcurl = "https://raw.githubusercontent.com/neelsmith/compnov/main/corpus/compnov.cex"

# ╔═╡ fdc92d2d-2877-4dac-b778-daeb1acd7d86
corpus = fromcex(srcurl, CitableTextCorpus, UrlReader)

# ╔═╡ cca90194-4474-4965-8946-406ded4ffdfe
vulgate = filter(corpus.passages) do psg
	versionid(psg.urn) == "vulgate"
end |> CitableTextCorpus

# ╔═╡ 2806ef34-7844-4f62-8db2-875a170bde32
vulgatetkns = tokenize(vulgate, latin24())

# ╔═╡ 761e232f-ceee-4236-8038-02032b44a0ee
vulgatelextkns = filter(t -> tokencategory(t) isa LexicalToken, vulgatetkns)

# ╔═╡ 6a761b48-4a30-4e7f-b51f-e4edf8763849
vulgatefreqs = countmap(map(t -> CitableCorpus.text(passage(t)), vulgatelextkns)) |> OrderedDict

# ╔═╡ 03d1b11d-498f-4be6-a375-c7700b536a75
vulgatesorted = sort(vulgatefreqs; rev = true,  byvalue = true)

# ╔═╡ 524e9be7-3fa0-4dcd-b48d-7065c04f83eb
begin
	vulgatelayout = Layout(title = "All of Vulgate", height = 400, width = 600)
	Plot(plotordereddict(vulgatesorted), vulgatelayout)
end

# ╔═╡ dfbca1a4-d664-4fe5-a4de-95baaac09cf8
vulgvocab = keys(vulgatesorted) |> collect

# ╔═╡ a724a105-b8cf-48bb-9731-3fe0559155fc
md"""Genesis only:"""

# ╔═╡ a7c3bd9a-7176-44eb-8405-b1d73eb39565
genesislex = filter(t -> workid(urn(t)) == "genesis", vulgatelextkns)

# ╔═╡ c062e00a-3bbf-48bb-9402-c6fa84232ca0
genesisfreqs = countmap(map(t -> CitableCorpus.text(passage(t)), vulgatelextkns)) |> OrderedDict


# ╔═╡ 5a428845-aa9f-427b-8c9f-d714a2026690
genesissorted = sort(genesisfreqs; rev = true,  byvalue = true)

# ╔═╡ 8123218d-253b-4a66-9802-7e6529ef6d0c
begin
	genesislayout = Layout(title = "Vulgate: Genesis", height = 400, width = 600)
	Plot(plotordereddict(genesissorted), genesislayout)
end

# ╔═╡ fc72955d-cc6f-4fdc-a301-52fff41d5d15
genesisvocab = keys(genesissorted) |> collect

# ╔═╡ 33c8b731-868b-4478-8b6d-f79b7a261f42
featurem = featurematrix(lxxvocab[1:alignmax], targvocab[1:alignmax], genesisvocab[1:alignmax], vulgvocab[1:alignmax])

# ╔═╡ 082ee54d-c434-42bc-9a2e-4c475c39d31f
rows = featurem[1:alignmax,:]

# ╔═╡ b554a80e-f698-489c-9675-003afbdbdeec
function tablify(m, titles)
	mdlines = ["| " * join(titles, " | ") * " |",
		repeat("| ---  ", length(titles)) * " |"
	]
	for r in eachrow(rows)
		push!(mdlines, "| " * join(r, " | ") * " |")
	end
	
	join(mdlines, "\n")
end

# ╔═╡ da364f80-c734-45d8-af80-2eb597d36d95
tablify(rows, ["LXX", "Targum", "Genesis", "Vulgate"]) |> Markdown.parse

# ╔═╡ c34c6cf3-3272-47fb-8515-f048addf982e


# ╔═╡ 00000000-0000-0000-0000-000000000001
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deps = ["LinearAlgebra"]
git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.7.0"

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git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.34.3"

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uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
version = "7.2.1+1"

[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
version = "1.0.3"

[[deps.TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.1"

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git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.11.1"

[[deps.Tar]]
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version = "1.10.0"

[[deps.TensorCore]]
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version = "0.1.1"

[[deps.Test]]
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uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[deps.TestSetExtensions]]
deps = ["DeepDiffs", "Distributed", "Test"]
git-tree-sha1 = "3a2919a78b04c29a1a57b05e1618e473162b15d0"
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version = "2.0.0"

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version = "0.10.9"
weakdeps = ["Random", "Test"]

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    TestExt = ["Test", "Random"]

[[deps.Tricks]]
git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f"
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git-tree-sha1 = "84fd7dadde577e01eb4323b7e7b9cb51c62c60d4"
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version = "1.4.6"

[[deps.URIs]]
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uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.5.1"

[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

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git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b"
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version = "1.0.2"

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git-tree-sha1 = "749e1c027969c6cd421c7762bfe764fcfb55f8f7"
uuid = "137e0234-31ad-43b7-8b27-b236525e28e1"
version = "0.3.0"

[[deps.WeakRefStrings]]
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git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23"
uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
version = "1.4.2"

[[deps.WebIO]]
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git-tree-sha1 = "0eef0765186f7452e52236fa42ca8c9b3c11c6e3"
uuid = "0f1e0344-ec1d-5b48-a673-e5cf874b6c29"
version = "0.8.21"

[[deps.WebSockets]]
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git-tree-sha1 = "4162e95e05e79922e44b9952ccbc262832e4ad07"
uuid = "104b5d7c-a370-577a-8038-80a2059c5097"
version = "1.6.0"

[[deps.Widgets]]
deps = ["Colors", "Dates", "Observables", "OrderedCollections"]
git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a"
uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62"
version = "0.6.6"

[[deps.WorkerUtilities]]
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uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60"
version = "1.6.1"

[[deps.XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "52ff2af32e591541550bd753c0da8b9bc92bb9d9"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.12.7+0"

[[deps.Zlib_jll]]
deps = ["Libdl"]
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.13+1"

[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.11.0+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.52.0+1"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"
"""

# ╔═╡ Cell order:
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