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"#E04C29"], ["C.2.1", "#E04B29"], ["C.3", "#E04A29"], ["C.4", "#E04929"], ["C.11", "#E04828"], ["C.14", "#DF4728"], ["C.16", "#DF4628"], ["C.19", "#DF4428"], ["C.20", "#DF4328"], ["C.23", "#DF4227"], ["C.26", "#DF4127"], ["C.35", "#DF4027"], ["C.36", "#DE3F27"], ["C.36.1", "#DE3E27"], ["C.37", "#DE3C26"], ["D.5", "#DE3B26"], ["K.2", "#DE3A26"], ["L.3", "#DE3926"], ["N.4", "#DE3826"], ["N.5", "#DD3725"], ["N.9", "#DD3625"], ["P.1", "#DD3525"], ["P.1.1", "#DD3325"], ["P.1.2", "#DD3225"], ["P.2", "#DD3124"], ["P.3", "#DC3024"], ["R.1", "#DC2F24"], ["U.3", "#DC2E24"], ["V.1", "#DC2D24"], ["W.1", "#DC2B23"], ["W.2", "#DC2A23"], ["Y.1", "#DC2923"], ["Z.1", "#DB2823"]], "title": "Pango Lineage", "type": "categorical"}, {"key": "GISAID_clade", "title": "GISAID Clade", "type": "categorical"}, {"key": "region_exposure", "title": "Region of exposure", "type": "categorical"}], "description": "This phylogeny shows evolutionary relationships of SARS-CoV-2 viruses from the ongoing novel coronavirus COVID-19 pandemic.\n\nAll data we use were deposited in GISAID by scientists around the world.\nWe gratefully acknowledge the authors, originating and submitting laboratories of the genetic sequence and metadata made available through [GISAID](https://gisaid.org) on which this research is based. A full listing of all originating and submitting laboratories is available below. 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L766-, E767-, Q768-, P769-, E772I, A773G, V774W, E775Y, A776T, P777S, V779-, G780-, T781-, P782-, V783-, C784-, I785-, N786-, G787-, L788-, M789-, L790-, L791-, E792-, I793-, K794-, D795Y, T796*, E797R, K798A, C800V, A803-, P804-, N805-, M806-, M807-, V808H, N810Q, N811R, T812R, F813C, L815N, G818-, A819-, P820-, T821-, K822-, V823-, T824-, F825-, G826-, D827-, D828-, T829-, V830-, I831-, E832-, V833-, Q834-, G835*, Y836*, S838D, V839*, N840*, I841S, F843-, E844-, L845-, D846-, E847-, R848-, I849-, D850-, K851-, V852-, L853-, N854-, E855-, K856-, C857-, S858-, A859-, Y860-, T861-, V862-, E863-, L864-, G865*, T866*, N869-, E870-, F871-, A872-, C873-, V874-, V875-, A876-, D877-, A878-, V879-, I880H, L883-, Q884-, P885-, V886-, S887-, E888-, L889-, L890-, T891-, P892-, L893-, G894-, I895-, D896-, L897-, D898-, E899-, W900-, S901-, M902-, A903-, Y905G, Y906H, L907*, D909V, S911Y, E913L, K915F, A917P, H919-, M920-, Y921-, C922-, S923-, F924-, Y925-, P926-, P927-, D928-, E929-, D930-, E931-, E932-, E933-, G934-, D935-, C936-, E937-, E938-, E939-, E940-, F941-, E942-, P943-, S944-, T945-, Q946-, Y947-, E948-, Y949-, G950-, T951-, E952-, D953-, D954-, Y955-, Q956-, G957-, K958-, P959-, L960-, E961T, T965-, S966-, A967-, A968-, L969-, Q970-, P971-, E972-, E973-, E974-, Q975-, E976-, E977-, D978-, W979-, L980-, D981-, D982-, D983-, S984R, Q985R, Q986R, T987L, Q991S, G993N, S994Y, E995Y, D996S, Q998G, T999S, I1001S, Q1003-, T1004-, I1005-, V1006-, E1007-, V1008-, Q1009-, P1010-, Q1011-, L1012-, E1013-, M1014-, E1015-, L1016-, T1017-, P1018-, V1019-, V1020-, Q1021R, T1022D, I1023G, E1024T, V1025Y, N1026T, F1028C, G1030D, K1033F, L1034K, D1036Y, N1037*, V1038Q, Y1039C, N1042-, A1043-, D1044-, I1045-, V1046-, E1047-, E1048-, A1049-, K1050-, K1051-, V1052-, K1053-, P1054-, T1055-, V1056-, V1057-, V1058-, N1059G, A1060K, A1061T, V1063R, Y1064S, H1067*, G1069-, G1070-, V1071-, A1072-, G1073-, A1074-, L1075-, N1076-, K1077-, A1078-, T1079-, N1080-, N1081-, A1082-, M1083-, Q1084-, V1085-, E1086-, S1087-, D1088-, D1089-, I1091W, A1092T, N1094-, G1095-, P1096-, L1097-, K1098-, V1099-, G1100-, G1101-, S1102-, C1103-, V1104-, L1105*, H1108W, N1109*, A1111P, H1113-, C1114-, L1115-, H1116-, V1117-, V1118-, G1119-, P1120-, N1121-, V1122-, N1123-, K1124-, G1125-, E1126-, D1127C, I1128*, L1131*, S1133-, A1134-, Y1135-, E1136-, N1137-, F1138-, N1139-, Q1140-, H1141-, E1142-, V1143-, L1144-, L1145-, A1146-, P1147-, L1148F, L1149*, G1152R, I1153S, F1154S, G1155T, A1156C, D1157T, P1158I, H1160I, L1162C, V1164Y, V1166-, D1167-, T1168-, V1169-, V1968L, A1969I, D1971N, Y1972T, K1973T, Y1975-, T1976-, P1977-, S1978-, F1979-, K1980-, K1981-, G1982-, A1983-, K1984P, H1987R, P1989L, V1991-, W1992-, H1993-, V1994-, N1995-, N1996-, A1997-, T1998-, N1999-, K2000-, A2001-, T2002-, Y2003-, T2007-, W2008-, C2009-, I2010-, R2011-, C2012-, L2013-, W2014-, S2015-, T2016-, K2017-, P2018-, V2019-, E2020-, T2021-, S2022-, N2023-, S2024-, F2025-, D2026-, V2027Q, S2030I, E2031L, D2032P, Q2034-, G2035-, M2036-, D2037-, N2038-, L2039-, A2040-, C2041-, E2042-, D2043-, L2044-, V2047-, S2048-, E2049-, E2050-, V2051-, V2052-, E2053-, N2054-, P2055-, T2056-, I2057-, Q2058-, K2059-, D2060-, V2061-, L2062-, E2063-, C2064-, N2065Y, V2066R, T2069F, E2070L, V2071S, G2073Q, D2074Q, L2077-, K2078-, P2079-, A2080-, N2081-, N2082-, S2083-, L2084-, K2085-, I2086-, T2087-, E2088-, E2089-, G2091I, H2092*, T2093W, D2094L, A2097-, A2098-, Y2099-, V2100-, D2101-, N2102-, S2103-, S2104-, L2105*, K2108*, N2111L, E2112L, S2114M, R2115V, V2116*, G2118L, K2120-, T2121-, L2122-, A2123-, T2124-, H2125-, G2126-, L2127-, A2128-, A2129-, V2130-, N2131-, S2132-, V2133-, P2134-, W2135-, D2136-, T2137-, A2139L, N2140I, Y2141M, A2142L, K2143S, P2144L, N2147T, V2149G, S2151*, T2153-, T2154-, N2155-, I2156-, V2157-, T2158-, R2159-, C2160-, L2161-, N2162-, R2163-, V2164-, C2165-, T2166-, N2167-, Y2168-, M2169-, P2170-, Y2171-, F2172V, T2174V, L2176I, Q2178E, C2180K, T2181H, F2182L, T2183C, S2185L, T2186L, N2187*, S2188Q, K2191-, A2192-, S2193-, M2194-, P2195-, T2196-, T2197-, I2198-, A2199-, K2200-, N2201-, T2202-, V2203-, K2204-, S2205-, V2206-, G2207-, K2208-, F2209-, C2210L, E2212R, A2213V, F2215V, Y2217R, K2219H, S2220L, P2221I, N2222I, F2223*, K2225H, N2228-, I2229-, I2230-, I2231-, W2232-, L2236-, S2237-, V2238-, C2239-, L2240-, G2241-, S2242-, L2243-, I2244-, Y2245*, A2248C, A2249L, G2251T, M2254-, S2255-, N2256-, L2257-, G2258-, M2259-, P2260-, S2261-, Y2262-, C2263-, T2264-, G2265-, Y2266-, R2267-, E2268-, G2269-, Y2270-, L2271-, N2272-, S2273V, N2275L, S2303-, L2304-, E2305-, T2306-, I2307-, Q2308-, I2309-, T2310-, I2311-, S2312-, S2313-, F2314-, K2315-, W2316-, D2317-, L2318-, T2319-, A2320-, L2323-, V2324-, A2325-, E2326-, W2327-, F2328-, L2329-, A2330-, Y2331-, I2332-, L2333-, T2335W, R2336H, F2337I, Y2339F, V2340S, L2343F, A2344S, M2347L, L2349-, F2350-, F2351-, S2352-, Y2353-, F2354-, A2355-, V2356-, H2357-, F2358-, I2359-, S2360-, N2361-, S2362-, W2363-, L2364Y, M2365I, W2366L, I2368V, N2370W, V2372-, Q2373-, M2374-, A2375-, P2376-, I2377-, S2378-, A2379-, M2380-, V2381-, R2382-, M2383-, Y2384-, I2385-, F2386-, F2387-, A2388-, S2389-, F2390-, Y2391-, Y2392-, W2394I, K2395H, S2396Q, Y2397L, H2399*, V2400C, D2402-, G2403-, C2404-, N2405-, S2406-, S2407-, T2408-, C2409-, M2410-, M2411-, C2412-, Y2413-, K2414-, R2415-, N2416-, R2417-, A2418-, R2420N, C2423-, T2424-, T2425-, I2426-, V2427-, N2428-, G2429-, V2430-, R2431-, R2432-, S2433-, F2434-, Y2435-, V2436-, Y2437-, A2438-, N2439-, G2440-, K2442P, G2443F, F2444M, C2445S, K2446M, N2449-, W2450-, N2451-, C2452-, V2453-, N2454-, C2455-, D2456-, T2457-, F2458-, C2459-, A2460-, G2461-, S2462-, T2463-, F2464-, I2465-, D2467V, E2468L, A2470V, R2471H, D2472L, Q2476-, F2477-, K2478-, R2479-, P2480-, I2481-, N2482-, P2483-, T2484K, S2487T, Y2489L, D2492-, S2493-, V2494-, T2495-, V2496-, K2497-, N2498-, G2499-, S2500-, I2501-, H2502-, Y2504K, F2505L, D2506V, A2508R, G2509L, Q2510M, Y2513*, E2514T, R2515T, H2516*, S2517E, S2519-, H2520-, F2521-, V2522-, N2523-, L2524-, D2525-, N2526-, L2527-, R2528-, A2529-, N2530-, N2531-, T2532-, K2533-, G2534-, S2535-, L2536-, P2537-, I2541-, V2542-, F2543-, D2544-, G2545-, K2546-, S2547-, K2548-, C2549-, E2550-, E2551-, S2552-, S2553-, A2554-, A2557L, S2558C, Y2560-, Y2561-, S2562-, Q2563N, M2565Y, Q2567Y, P2568*, L2571M, D2573-, Q2574-, A2575-, L2576-, V2577-, S2578-, D2579-, V2580-, G2581-, D2582-, S2583-, A2584-, E2585-, A2587I, K2589I, M2590R, D2592-, A2593-, Y2594-, V2595-, N2596-, T2597-, F2598-, S2599-, S2600-, T2601-, F2602-, N2603-, V2604-, P2605-, M2606-, E2607H, K2608Q, K2610L, V2613-, A2614-, T2615-, A2616-, E2617-, A2618-, E2619-, L2620-, A2621-, K2622-, N2623-, V2624-, S2625-, L2626-, D2627-, V2629Q, S2631-, T2632-, F2633-, I2634-, S2635-, A2636-, A2637-, R2638-, Q2639-, G2640-, F2641-, V2642-, D2643-, S2644-, D2645-, V2646-, E2647-, T2648G, D2650N, V2652L, E2653N, L2655*, S2658L, H2659A, Q2660I, S2661V, D2662V, E2664-, V2665-, G2667I, D2668C, C2670-, N2671-, N2672-, Y2673-, M2674-, L2675-, T2676-, Y2677-, N2678-, K2679-, V2680-, E2681-, N2682-, M2683-, T2684-, D2687-, L2688-, G2689-, A2690-, C2691-, I2692-, D2693-, C2694-, S2695-, A2696-, R2697-, H2698-, I2699-, N2700-, A2701-, Q2702-, V2703-, A2704-, K2705-, S2706-, H2707-, N2708V, A2710L, L2711M, I2712R, W2713R, N2714*, V2715Q, D2717V, F2718T, M2719T, S2720L, S2722Y, E2723V, Q2724V, R2726L, Q2728R, R2730-, S2731-, A2732-, A2733-, K2734-, K2735-, N2736-, N2737-, L2738-, P2739-, F2740-, K2741-, L2742-, T2743-, C2744-, A2745-, T2746-, Q2749*, V2750H, V2751L, N2752R, T2755-, T2756-, K2757-, I2758-, A2759-, L2760-, K2761-, G2762-, G2763-, K2764-, I2765-, V2766-, N2767-, N2768-, W2769-, L2770-, Q2772L, V2776L, T2777H, V2779*, F2780H, V2783-, A2784-, A2785-, I2786-, F2787-, Y2788-, L2789-, I2790-, T2791-, P2792-, V2793-, H2794-, V2795-, H2799S, T2800*, F2802-, S2803-, S2804-, E2805-, I2806-, I2807-, G2808-, Y2809-, K2810-, A2811-, I2812-, D2813-, G2814-, G2815-, V2816-, D2819Q, A2821L, S2822V, T2823L, D2824L, C2826-, F2827-, A2828-, N2829-, K2830-, H2831-, A2832-, D2833-, F2834-, D2835-, T2836-, W2837-, F2838-, S2839-, Q2840-, R2841N, G2842M, G2843L, S2844I, Y2845L, N2847H, D2848G, K2849L, C2851W, P2852V, I2854S, A2855C, A2856L, I2858-, T2859-, R2860-, E2861-, V2862-, G2863-, F2864-, V2865-, V2866-, P2867-, G2868-, L2869-, P2870-, G2871-, T2872-, I2873C, R2875V, T2877F, N2878C, G2879I, D2880S, F2881Y, H2883E, P2886V, R2887Q, V2888L, F2889V, S2890T, A2891S, G2893T, N2894H, I2895H, C2896Q, Y2897N, T2898L, P2899*, K2901T, I2903-, E2904-, Y2905-, T2906-, D2907-, F2908-, A2909-, T2910-, S2911-, A2912-, C2913-, V2914-, A2916-, A2917-, E2918-, C2919-, T2920-, I2921-, F2922-, K2923-, D2924-, A2925-, S2926-, G2927-, K2928-, P2929-, V2930-, P2931-, Y2932-, C2933-, Y2934-, D2935-, T2936-, N2937-, E2940L, G2941M, S2942K, A2944-, Y2945-, E2946-, S2947-, L2948-, R2949-, P2950-, D2951-, T2952-, R2953-, V2955A, M2957-, D2958-, G2959-, S2960-, I2961-, I2962-, Q2963-, F2964-, P2965-, N2966-, T2967-, Y2968-, E2970T, G2971P, S2972T, V2973L, R2974K, T2977G, F2979-, D2980-, S2981-, E2982-, Y2983-, C2984-, R2985-, H2986-, G2987-, T2988-, C2989-, E2990-, R2991-, S2992-, E2993-, G2995L, C2997M, V2998I, S2999I, S3001-, G3002-, R3003-, W3004-, V3005-, L3006-, N3007-, N3008-, D3009-, Y3010-, Y3011-, R3012-, S3013-, L3014-, P3015-, G3016-, V3017-, F3018-, C3019-, G3020-, V3021-, A3023*, V3024F, T3028-, N3029-, M3030-, F3031-, T3032-, P3033-, L3034-, I3035-, Q3036-, P3037-, I3038-, G3039-, A3040-, L3041-, D3042-, I3043-, S3044-, A3045-, S3046-, I3047-, A3049L, G3050P, G3051T, V3053L, A3054*, I3055G, V3056L, V3057E, T3058E, C3059L, A3061-, Y3062-, Y3063-, F3064-, M3065-, R3066-, F3067-, R3068-, R3069-, A3070-, F3071-, G3072-, E3073-, Y3074-, S3075-, H3076-, V3077-, V3078-, A3079-, F3080V, L3083V, L3084M, F3085*, M3087H, S3088Q, V3091-, L3092-, C3093-, L3094-, T3095-, P3096-, V3097-, Y3098-, S3099-, F3100-, L3101-, P3102-, G3103-, V3104-, Y3105-, S3106-, V3107-, I3108-, Y3109H, L3110S, T3113V, Y3115I, T3117G, N3118W, D3119L, V3120C, F3122H, A3124-, H3125-, I3126-, Q3127-, W3128-, M3129-, V3130-, M3131-, F3132-, T3133-, P3134-, L3135-, V3136-, P3137-, F3138-, W3139-, I3140-, T3141-, I3142-, A3143-, Y3144-, I3145-, I3146*, C3147Y, I3148L, K3151-, H3152-, F3153-, Y3154-, W3155-, F3156-, F3157-, S3158-, N3159-, Y3160-, L3161-, K3162*, R3164D, N3168P, G3169L, S3171-, F3172-, S3173-, T3174-, F3175-, E3176-, E3177-, A3178-, A3179-, L3180-, C3181-, T3182-, F3183-, N3186K, E3188C, M3189Y, K3192-, L3193-, R3194-, S3195-, D3196-, V3197-, L3198-, L3199-, P3200-, L3201-, T3202-, Q3203-, Y3204-, N3205-, R3206-, Y3207-, L3208-, A3209-, Y3211R, K3213-, Y3214-, K3215-, Y3216-, F3217-, S3218-, G3219-, A3220-, M3221-, D3222-, T3223-, T3224-, S3225-, Y3226-, R3227-, E3228-, A3229-, A3230-, C3231-, C3232-, H3233-, A3237L, N3239V, D3240V, F3241I, N3243T, G3245V, S3246T, D3247Q, Y3250P, Q3251L, P3252S, T3255-, S3256-, I3257-, T3258-, S3259-, A3260-, V3261-, L3262-, Q3263-, S3264-, G3265-, F3266-, R3267-, K3268-, M3269-, A3270L, P3272H, G3274H, K3275L, E3277K, G3278L, C3279R, M3280V, Q3282L, T3284V, C3285Q, G3286L, T3287H, T3288L, L3290V, N3291F, W3294-, L3295-, D3296-, D3297-, V3298-, V3299-, Y3300-, C3301-, P3302-, R3303-, H3304M, V3305T, I3306*, C3307F, S3309V, E3310Q, N3314-, P3315-, N3316-, Y3317-, E3318-, D3319-, L3320T, R3323M, S3325I, N3326S, H3327W, N3328Y, F3329R, Q3332-, A3333-, G3334-, N3335-, V3336-, Q3337-, L3338-, R3339-, V3340-, I3341-, G3342-, H3343-, S3344-, Q3346F, C3348S, V3349G, K3351H, K3353-, V3354-, D3355-, T3356-, A3357-, N3358-, P3359-, K3360-, T3361-, P3362-, K3363-, Y3364-, K3365-, F3366-, V3367-, R3368-, I3369-, Q3370-, P3371-, G3372-, Q3373-, T3374S, F3375I, L3378-, A3379-, C3380-, Y3381-, N3382-, G3383-, S3384-, P3385-, S3386-, G3387-, V3388-, Y3389-, Q3390-, C3391-, A3392-, M3393-, R3394-, P3395-, N3396-, K3400-, G3401-, S3402-, F3403-, L3404-, N3405-, G3406-, C3408L, G3409L, S3410R, G3412L, N3414-, I3415-, D3416-, Y3417-, D3418-, C3419-, V3420-, S3421-, F3422-, C3423-, Y3424-, M3425-, H3426-, H3427-, M3428-, E3429-, L3430-, P3431-, T3432-, G3433-, H3435L, G3437Q, D3439L, E3441T, N3443K, F3444Q, Y3445H, G3446K, P3447Q, F3448L, D3450R, R3451T, T3453-, A3454-, Q3455-, A3456-, A3457-, G3458-, T3459-, D3460-, T3461-, T3462-, I3463-, T3464-, V3465-, N3466-, V3467-, L3468-, A3469-, W3470L, Y3472Q, A3473L, A3474M, V3475F, I3476*, N3477L, D3479C, R3480T, W3481L, F3482L, N3484*, R3485M, F3486E, T3488S, L3490-, N3491-, D3492-, F3493-, N3494-, L3495-, V3496-, A3497-, M3498-, K3499-, Y3500-, N3501-, Y3502-, E3503-, P3504-, L3505-, T3506-, Q3507-, D3508-, H3509-, V3510-, D3511-, G3514L, P3515K, S3517E, A3518L, Q3519P, T3520F, G3521*, A3523C, D3526H, M3527*, C3528K, A3529N, S3530Y, L3531C, E3533-, L3534-, L3535-, Q3536-, N3537-, G3538-, M3539-, N3540-, G3541-, R3542-, T3543-, I3544-, L3545-, G3546-, S3547-, A3548M, E3551-, D3552-, E3553-, F3554-, T3555-, P3556-, F3557-, D3558-, V3559-, V3560-, R3561-, Q3562-, C3563-, S3564-, G3565-, V3566-, T3567-, F3568-, A3571R, K3573-, R3574-, T3575-, I3576-, K3577-, G3578-, T3579-, H3580-, H3581-, W3582-, L3583-, L3584H, L3585T, I3587G, L3588C, T3589Y, L3591Q, L3592F, V3593*, Q3596L, S3597N, T3598G, Q3599L, W3600C, L3602F, F3605Y, Y3607-, E3608-, N3609-, A3610-, F3611-, L3612-, P3613-, F3614-, A3615-, M3616-, G3617-, I3618-, I3619-, A3620-, M3621-, S3622-, A3623-, A3625S, M3626V, M3627C, V3629-, K3630-, H3631-, K3632-, H3633-, A3634-, F3635-, L3636-, L3638Y, F3639L, L3644-, A3645-, T3646-, V3647-, A3648-, Y3649-, F3650-, N3651-, M3652-, V3653-, Y3654-, M3655-, P3656-, A3657-, S3658-, W3659-, V3660-, M3661-, R3662-, M3664W, T3665I, D3668I, M3669L, D3671C, T3672L, S3673V, G3676-, F3677-, K3678-, L3679-, K3680-, D3681-, C3682-, V3683-, M3684-, Y3685-, A3686-, S3687*, A3688K, V3689T, I3693-, L3694-, M3695-, T3696-, A3697-, R3698-, T3699-, V3700-, Y3701-, D3702-, D3703-, G3704-, A3705-, R3706-, R3707-, V3708-, W3709-, T3710C, L3711M, N3713M, T3716M, V3718*, Y3719I, V3721P, Y3722F, Y3723P, G3724C, N3725G, A3726L, D3728-, Q3729-, A3730-, I3731*, M3733L, W3734L, A3735L, I3737T, I3738T, S3739Q, T3741*, S3742L, N3743Q, Y3744L, G3746C, V3747F, V3748W, T3749P, T3750E, M3752L, R3756-, G3757-, I3758-, V3759-, F3760-, M3761-, C3762-, V3763-, E3764-, Y3765-, C3766-, P3767-, I3768-, F3769-, F3770-, I3771-, T3772-, G3773-, N3774-, T3775-, Q3777F, C3778S, I3779S, M3780*, Y3783I, C3784H, G3787A, Y3788S, C3790V, T3791Y, C3792S, Y3793I, F3794A, G3795T, F3797D, C3798*, N3801-, R3802-, Y3803-, F3804-, R3805-, L3806-, T3807-, L3808-, G3809-, V3810-, Y3811-, D3812-, Y3813-, L3814-, V3815-, S3816-, T3817-, Q3818-, E3819V, R3821D, M3823S, N3824H, S3825P, Q3826R, G3827I, L3828A, L3829*, P3830M, K3832S, I3835-, D3836-, A3837-, F3838-, K3839T, I3842C, K3843W, L3844V, G3846-, V3847-, G3848-, G3849-, K3850-, P3851-, C3852-, I3853-, K3854-, T3857N, V3858L, Q3859V, S3863-, D3864-, V3865-, K3866-, C3867-, T3868-, S3869-, V3870-, V3871-, L3872-, L3873*, V3875A, L3876H, Q3878G, R3880N, E3882S, S3884-, S3885-, K3886-, L3887-, W3888-, A3889-, Q3890-, C3891-, V3892-, Q3893-, L3894-, H3895-, N3896-, D3897-, I3898-, L3899-, L3900-, A3901-, K3902-, D3903-, T3904Y, E3906M, A3907T, E3909S, K3910*, M3911L, V3912K, S3913I, S3916R, L3919*, S3920T, M3921*, Q3922T, G3923S, A3924F, D3926-, I3927-, N3928-, L3930K, E3932-, E3933-, M3934-, L3935-, D3936-, N3937-, R3938W, A3939T, L3941G, A3943P, I3944Y, A3945K, S3946L, E3947*, F3948P, S3949Q, P3952-, S3953-, Y3954-, A3955V, A3956P, A3958H, T3959H, A3960M, E3962-, A3963-, Y3964-, E3965-, Q3966-, A3967-, V3968-, A3969-, N3970-, G3971-, D3972-, S3973-, E3974-, V3976I, K3979L, L3980F, K3981L, N3985T, A3987-, K3988-, S3989-, E3990-, F3991-, D3992-, R3993-, D3994-, A3995-, A3996-, K4000W, E4002I, M4004-, A4005-, D4006-, Q4007-, A4008-, M4009-, T4010-, Q4011L, M4012*, Y4013P, Q4015C, A4016I, R4017N, S4018R, E4019L, K4021L, A4023-, K4024-, V4025-, T4026-, S4027-, A4028-, M4029-, Q4030-, L4033H, F4034S, M4036-, L4037-, R4038-, K4039-, L4040-, D4041-, N4042-, D4043-, A4044-, L4045-, N4046-, N4047-, I4048-, I4049-, N4050-, N4051-, A4052-, R4053-, D4054-, G4055-, C4056-, V4057-, P4058T, I4061-, I4062-, P4063-, L4064-, T4065-, T4066-, A4067-, A4068-, K4069-, L4070-, M4071-, V4072-, V4073-, I4074-, P4075-, D4076*, Y4077W, N4078L, T4079S, K4081Q, N4082Q; ORF1b: A1428V, W1429G, R1430E, A1432-, V1433-, F1434-, I1435-, S1436-, P1437-, Y1438-, N1439-, S1440-, Q1441-, N1442-, A1443-, V1444Y, A1445Q, S1446L, I1448L, G1450-, L1451-, P1452-, T1453-, Q1454-, T1455-, V1456-, D1457-, S1458-, S1459-, Q1460-, G1461-, S1462-, E1463-, Y1464-, D1465-, Y1466-, V1467-, F1469L, T1470K, T1472L, E1474-, T1475-, A1476-, H1477-, S1478-, C1479-, N1480-, V1481-, N1482-, R1483-, F1484-, N1485L, A1487M, I1488*, R1490F, K1492*, V1493C, G1494L, L1496E, C1497T, I1498F, S1500-, D1501-, R1502-, D1503-, L1504-, Y1505-, D1506-, K1507-, L1508-, Q1509-, F1510-, E1514Q, I1515V, P1516L, R1517K, R1518F, N1519H, A1521G, T1522M, L1523W, A1525-, E1526-, N1527-, V1528-, T1529-, G1530-, F1532Y, C1535S, S1536L, V1538Y, T1540L, G1541H, L1542R, P1544-, T1545-, Q1546-, A1547-, P1548-, T1549L, L1551T, D1554L, F1557L, T1559V, E1560Y, G1561V, C1563-, V1564-, D1565-, I1566-, P1567-, G1568-, I1569-, P1570-, K1571-, D1572-, M1573-, R1576K, R1577*, L1578I, S1580K, M1581L, G1583-, F1584-, K1585-, M1586-, N1587-, Y1588-, Q1589-, V1590-, N1591-, G1592-, Y1593-, P1594-, N1595-, M1596-, F1597-, I1598-, T1599-, R1600-, E1601-, E1602-, I1604-, R1605-, H1606-, V1607-, R1608-, A1609-, W1610-, I1611-, G1612-, F1613-, D1614-, V1615-, E1616-, G1617-, C1618-, H1619-, A1620-, T1621-, R1622S, E1623M, A1624S, V1625R, T1627V, N1628M, P1630F, L1633-, G1634-, F1635-, S1636-, T1637-, G1638-, V1639-, N1640-, L1641-, V1642-, A1643-, V1644-, P1645-, T1646-, G1647-, Y1648-, D1650L, P1652L, N1654-, T1655-, D1656-, F1657-, S1658-, R1659-, V1660-, S1661-, A1662-, K1663-, P1664-, P1665-, P1666-, G1667-, D1668-, Q1669-, F1670-, K1671-, I1674-, P1675-, L1676-, M1677-, Y1678-, K1679-, G1680-, L1681-, P1682-, W1683-, N1684-, V1685-, V1686-, R1687-, I1688-, K1689-, I1690-, V1691-, Q1692G, L1694I, D1696L, L1698E, K1699S, N1700Y, D1703-, R1704-, V1705-, V1706-, F1707-, V1708-, L1709-, W1710-, A1711-, H1712-, G1713-, F1714-, E1715-, L1716-, T1717-, S1718-, M1719-, K1720-, F1722V, V1723Y, K1724V, G1726-, P1727-, E1728-, R1729-, T1730-, C1731-, C1732-, L1733-, C1734-, D1735-, R1736-, R1737-, A1738-, T1739-, C1740-, F1741-, S1742-, T1743-, A1744-, S1745-, T1747-, Y1748-, A1749-, C1750-, W1751-, H1752-, H1753-, S1754-, I1755-, G1756-, F1757-, D1758-, Y1759-, V1760-, Y1761-, N1762-, P1763-, F1764-, M1765-, I1766-, Q1769-, Q1770-, W1771-, G1772-, F1773-, T1774-, G1775-, N1776-, L1777-, Q1778-, S1779-, N1780-, H1781-, D1782-, L1783-, Y1784-, C1785L, H1788T, G1789Y, N1790K, H1792L, V1793G, A1794V, D1797-, A1798-, I1799-, M1800-, T1801-, R1802-, C1803-, L1804-, A1805-, V1806-, H1807-, E1808-, C1809-, F1810-, V1811-, K1812P, W1816Y, T1817*, E1819S, P1821-, I1822-, I1823-, G1824-, D1825-, E1826-, L1827-, K1828-, I1829-, A1831*, A1832S, R1834-, K1835-, V1836-, Q1837-, H1838-, M1839-, V1840-, V1841-, K1842-, A1843-, A1844-, L1845-, L1846-, A1847-, D1848-, K1849-, F1850-, P1851-, V1852-, L1853-, H1854-, D1855-, G1857-, N1858-, P1859-, K1860-, A1861-, I1862-, K1863-, C1864-, V1865-, P1866-, Q1867-, A1868-, D1869-, V1870-, E1871-, W1872-, K1873-, F1874-, Y1875-, D1876-, A1877-, Q1878S, P1879*, D1882L, K1883*, A1884N, Y1885R, K1886R, E1888-, E1889I, Y1892-, S1893-, Y1894-, A1895-, T1896-, H1897-, S1898-, D1899-, K1900-, F1901-, T1902-, D1903-, G1904-, V1905L, F1908E, W1909L, N1910Q, N1912-, V1913-, D1914-, R1915-, Y1916-, P1917-, A1918-, N1919R, S1920*, V1922S, R1924*, D1926I, T1927*, R1928P, V1929*, S1931A, N1932W, N1934-, L1935-, P1936-, G1937-, C1938-, D1939-, G1940-, G1941-, S1942-, L1943-, Y1944-, V1945-, N1946-, K1947-, H1948-, A1949-, F1950P, P1953S, A1954F, F1955*, D1956*, S1958T, A1959I, V1961L, N1962L, K1964*, L1966-, P1967-, F1968-, F1969-, Y1970-, Y1971-, S1972-, D1973-, S1974-, P1975-, C1976-, E1977-, S1978-, H1979-, G1980-, K1981S, Q1982M, V1983*, D1986C, I1987Y, D1988V, V1990N, P1991T, K1993Q, S1994F, A1995R, T1996W, I1998*, R2000S, N2002*, L2003*, G2004V, G2005Q, A2006I, C2008S, H2010-, H2011-, A2012-, N2013-, E2014-, Y2015-, R2016-, L2017-, Y2018-, L2019-, D2020-, A2021-, Y2022-, N2023-, M2024-, M2025-, I2026-, S2027-, A2028-, G2029-, F2030-, S2031C, W2033L, Y2035G, K2036L, F2038-, D2039-, T2040-, Y2041-, N2042-, L2043-, W2044-, N2045-, F2047I, T2048*, R2049Y, Q2051*, S2052P, N2055-, V2056-, A2057-, F2058-, N2059-, V2060-, V2061-, N2062-, K2063-, G2064-, H2065-, F2066-, D2067-, G2068-, Q2069-, Q2070-, G2071-, E2072-, V2073-, P2074-, V2075-, S2076-, I2077L, I2078*, N2079W, N2080T, V2082-, Y2083-, T2084-, K2085-, V2086-, D2087-, G2088-, V2089-, D2090-, V2091-, E2092-, L2093-, F2094-, E2095-, N2096-, K2097-, T2098-, T2099-, L2100-, P2101-, V2102-, N2103I, F2106Q, E2107H, L2108*, W2109T, A2110S, K2111T, N2113-, I2114-, K2115-, P2116-, V2117-, P2118-, E2119-, V2120-, K2121-, I2122-, L2123-, N2124-, N2125-, L2126-, G2127-, V2128-, D2129-, I2130-, A2131G, A2132E, V2135D, I2136L, W2137G, D2138L, Y2139Q, D2142-, A2143-, P2144-, A2145-, H2146-, I2147-, S2148-, T2149-, I2150-, G2151-, V2152-, M2155S, D2157Y, A2159*, K2160N, K2161D, P2162L, T2163C, E2164T, I2166H, A2168-, P2169-, L2170-, T2171-, V2172-, F2173-, F2174-, D2175-, G2176-, R2177-, V2178-, D2179-, G2180-, Q2181-, V2182-, D2183-, N2187-, A2188-, R2189-, N2190-, G2191-, V2192-, T2195I, E2196C, G2197R, V2199-, K2200-, G2201-, L2202-, Q2203-, P2204-, S2205-, V2206-, G2207-, P2208-, K2209-, A2211T, L2213K, G2215-, V2216-, T2217-, L2218-, I2219-, G2220-, E2221-, A2222-, V2223-, K2224-, T2225-, Q2226-, F2227-, N2228-, Y2229-, Y2230-, K2231-, K2232-, V2233-, D2234-, G2235-, V2236T, Q2239L, P2241*, T2243R, Y2244I, F2245*, S2248E, R2249S, L2251G, Q2252N, E2253*, K2255L, P2256R, R2257I, Q2259Y, M2260G, E2261*, D2263-, F2264-, L2265-, E2266-, L2267-, A2268H, M2269*, D2270T, E2271V, F2272*, E2274R, Y2276L, K2277C, E2279R, G2280T, A2282-, F2283-, E2284-, H2285-, I2286-, V2287-, Y2288-, G2289-, D2290-, F2291-, S2292-, H2293-, S2294-, Q2295R, G2297S, G2298*, L2299T, H2300F, L2301*, L2302G, G2304T, L2305F, A2306*, K2307I, F2309R, K2310F, E2311Y, P2313-, F2314-, E2315-, L2316-, E2317-, D2318-, F2319-, I2320-, P2321-, M2322-, D2323-, S2324-, T2325-, V2326-, K2327-, N2328-, T2332-, D2333-, A2334-, Q2335-, T2336-, G2337-, S2338-, S2339-, K2340-, C2341*, S2344-, V2345-, I2346-, D2347-, L2348-, L2349-, L2350-, D2351-, D2352V, V2354P, E2355R, I2356F, K2358C, D2361-, L2362-, S2363-, V2364-, V2365-, S2366-, K2367-, V2368-, V2369-, K2370-, V2371M; ORF3a: I20-, K21-, D22-, A23-, T24-, P25-, S26-, D27-, F28-, V29S, A31D, A33D, I35-, P36-, I37-, Q38-, A39-, G44R, W45M, L46A, I47Y, V48C, G49W, V50R, A51C, L52T, L53S, A54C, V55C, H57S, S177-, P178-, I179-, S180-, E181-, H182-, D183-, Y184-, Q185-, I186N, G188N, Y189L, T190E, E191*, W193-, E194-, S195-, G196-, V197-, K198-, D199-, C200-, V201-, V202-, L203-, H204-, S205-, Y206-, F207-, S209V, D210L, Q213T, L214V, Y215T, T217L, L219T, S220I, D222-, T223-, G224-, V225-, E226-, H227-, V228-, T229-, F230-, F231-, I232-, Y233-, N234-, K235-, I236-, V237-, D238-, E239-, E241N, E242S, V244-, Q245-, I246-, H247-, T248-, I249-, D250-, G251-, S252-, S253-, G254-, V255-, V256-, P258S, V259S, M260N, *261E; ORF8: S54X, *122X"}, "mutations": {"N": ["D377-", "E378M", "T379K", "Q380S", "A381S", "P383T", "Q384A"], "ORF1a": ["P19R", "P309-", "N310-", "E311-", "C312-", "N313-", "L317A", "S318F", "T319Q", "M321-", "K322-", "C323-", "D324-", "H325-", "C326-", "G327-", "E328-", "T329-", "W331*", "Q332S", "T333V", "G334I", "D335I", "F336V", "T340-", "C341-", "E342-", "F343-", "C344-", "G345-", "T346-", "E347-", "T350-", "K351-", "E352-", "G353-", "A354-", "T355-", "T356-", "C357-", "G358-", "Y359-", "L360-", "P361-", "Q362-", "N363-", "A364-", "I368-", "Y369-", "C370-", "P371-", "A372-", "C373*", "H374D", "N375L", "E377I", "G379L", "E381-", "H382-", "S383-", "L384-", "A385-", "E386-", "Y387-", "H388-", "N389-", "E390-", "S391-", "G392-", "L393-", "K394N", "R398-", "K399-", "G400-", "G401-", "R402-", "T403-", "I404-", "A405-", "F406-", "G407-", "G408E", "C409A", "F411C", "Y413-", "V414-", "G415-", "C416-", "H417-", "N418-", "K419-", "C420-", "A421L", "Y422M", "W423L", "P425A", "R426I", "A427T", "A429V", "N430P", "C433L", "N434A", "H435L", "G437*", "G440-", "E441-", "G442-", "S443-", "E444-", "G445-", "L446T", "N447I", "D448Q", "N449V", "Q455-", "K456-", "E457-", "K458-", "V459-", "N460-", "I461-", "N462-", "I463-", "V464-", "G465-", "D466L", "F467V", "K468T", "E471L", "E472M", "I473K", "A474R", "I475S", "I476P", "A478-", "S479-", "F480-", "S481-", "A482-", "S483-", "T484-", "S485-", "A486-", "V488K", "E489H", "T490S", "V491N", "G493L", "D495-", "Y496-", "K497-", "A498-", "F499-", "K500-", "Q501-", "I502-", "V503-", "E504-", "S505-", "C506-", "G507-", "F509L", "V511L", "T512Q", "G514E", "A516L", "G519-", "A520-", "W521-", "N522-", "I523-", "G524-", "E525-", "Q526-", "K527-", "S528-", "I529-", "L530-", "S531V", "A535D", "F536Q", "A537F", "E539P", "A541-", "R542-", "V543-", "V544-", "R545-", "S546-", "I547-", "F548-", "S549-", "R550-", "T551-", "L552-", "E553-", "T554-", "A555-", "Q556-", "N557-", "S558-", "V559-", "R560-", "V561-", "Q563L", "A565-", "A566L", "I567L", "T568K", "D571H", "G572S", "S574H", "Q575*", "Y576D", "R579-", "L580-", "I581-", "D582-", "A583-", "M585L", "F586*", "T587C", "D589H", "A591-", "T592-", "N593-", "N594-", "L595-", "V596-", "V597-", "M598-", "A599-", "Y600-", "G603L", "G604Q", "Q607*", "Q611-", "W612-", "L613-", "T614-", "N615-", "I616-", "F617-", "G618-", "T619-", "V620-", "Y621-", "E622-", "K623-", "L624-", "K625-", "P626-", "V627-", "L628-", "D629L", "W630A", "E632F", "E633M", "K636L", "G638T", "E640G", "F641K", "R643-", "D644-", "G645-", "W646-", "E647-", "I648-", "V649-", "K650-", "F651-", "I652-", "S653-", "T654-", "C655-", "A656-", "C657-", "E658-", "I659-", 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