group,replicate,barcode,input_file,genome,transcriptome MCF7,1,,MCF7_directcDNA_replicate1.fastq.gz,genome.fa,genes.gtf MCF7,2,,MCF7_directcDNA_replicate2.fastq.gz,genome.fa,genes.gtf MCF7,3,,MCF7_directRNA_replicate3.fastq.gz,genome.fa,genes.gtf K562,1,,K562_directcDNA_replicate1.fastq.gz,genome.fa,genes.gtf K562,2,,K562_directcDNA_replicate2.fastq.gz,genome.fa,genes.gtf K562,3,,K562_directRNA_replicate3.fastq.gz,genome.fa,genes.gtf