Source Name	Characteristics[organism]	Characteristics[organism part]	Characteristics[age]	Characteristics[ancestry category]	Characteristics[developmental stage]	Characteristics[cell line]	Characteristics[cell type]	Characteristics[sex]	Characteristics[mass]	Characteristics[spiked compound]	Characteristics[spiked compound 2]	Characteristics[spiked compound 3]	Characteristics[spiked compound 4]	Characteristics[disease]	Characteristics[biological replicate]	Material Type	assay name	technology type	comment[data file]	comment[file uri]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[cleavage agent details]	comment[dissociation method]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	Factor Value[spiked compound]	Factor Value[spiked compound]	Factor Value[spiked compound]	Factor Value[spiked compound]
Sample 1	Dickeya chrysanthemi	whole plant	not available	not available	not available	not applicable	not available	not applicable	1	SP=Yeast;CT=protein;AC=P00924;QY=10	SP=BOVIN;CT=protein;AC=P02769;QY=1	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1	not available	1	cell	run 1	proteomic profiling by mass spectrometry	TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	1	1	TMT126	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35	NT=Methylthio;TA=C;MT=fixed;AC=UNIMOD:39	NT=TMT6plex;TA=K;MT=Fixed;AC=UNIMOD:737	NT=TMT6plex;PP=Any N-term;MT=Fixed;AC=UNIMOD:737	AC=MS:1001313;NT=Trypsin	NT=HCD;AC=PRIDE:0000590	not available	not available	SP=Yeast;CT=protein;AC=P00924;QY=10	SP=BOVIN;CT=protein;AC=P02769;QY=1	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1
Sample 2	Dickeya chrysanthemi	whole plant	not available	not available	not available	not applicable	not available	not applicable	1	SP=Yeast;CT=protein;AC=P00924;QY=5	SP=BOVIN;CT=protein;AC=P02769;QY=2.5	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1	not available	1	cell	run 1	proteomic profiling by mass spectrometry	TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	1	1	TMT127	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35	NT=Methylthio;TA=C;MT=fixed;AC=UNIMOD:39	NT=TMT6plex;TA=K;MT=Fixed;AC=UNIMOD:737	NT=TMT6plex;PP=Any N-term;MT=Fixed;AC=UNIMOD:737	AC=MS:1001313;NT=Trypsin	NT=HCD;AC=PRIDE:0000590	not available	not available	SP=Yeast;CT=protein;AC=P00924;QY=5	SP=BOVIN;CT=protein;AC=P02769;QY=2.5	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1
Sample 3	Dickeya chrysanthemi	whole plant	not available	not available	not available	not applicable	not available	not applicable	1	SP=Yeast;CT=protein;AC=P00924;QY=2.5	SP=BOVIN;CT=protein;AC=P02769;QY=5	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1	not available	1	cell	run 1	proteomic profiling by mass spectrometry	TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	1	1	TMT128	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35	NT=Methylthio;TA=C;MT=fixed;AC=UNIMOD:39	NT=TMT6plex;TA=K;MT=Fixed;AC=UNIMOD:737	NT=TMT6plex;PP=Any N-term;MT=Fixed;AC=UNIMOD:737	AC=MS:1001313;NT=Trypsin	NT=HCD;AC=PRIDE:0000590	not available	not available	SP=Yeast;CT=protein;AC=P00924;QY=2.5	SP=BOVIN;CT=protein;AC=P02769;QY=5	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1
Sample 4	Dickeya chrysanthemi	whole plant	not available	not available	not available	not applicable	not available	not applicable	1	SP=Yeast;CT=protein;AC=P00924;QY=1	SP=BOVIN;CT=protein;AC=P02769;QY=10	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1	not available	1	cell	run 1	proteomic profiling by mass spectrometry	TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	1	1	TMT129	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35	NT=Methylthio;TA=C;MT=fixed;AC=UNIMOD:39	NT=TMT6plex;TA=K;MT=Fixed;AC=UNIMOD:737	NT=TMT6plex;PP=Any N-term;MT=Fixed;AC=UNIMOD:737	AC=MS:1001313;NT=Trypsin	NT=HCD;AC=PRIDE:0000590	not available	not available	SP=Yeast;CT=protein;AC=P00924;QY=1	SP=BOVIN;CT=protein;AC=P02769;QY=10	SP=RABIT;CT=protein;AC=P00489;QY=2	SP=BOVIN;CT=protein;AC=P62894;QY=1
Sample 5	Dickeya chrysanthemi	whole plant	not available	not available	not available	not applicable	not available	not applicable	1	SP=Yeast;CT=protein;AC=P00924;QY=2.5	SP=BOVIN;CT=protein;AC=P02769;QY=5	SP=RABIT;CT=protein;AC=P00489;QY=1	SP=BOVIN;CT=protein;AC=P62894;QY=1	not available	1	cell	run 1	proteomic profiling by mass spectrometry	TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	1	1	TMT130	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35	NT=Methylthio;TA=C;MT=fixed;AC=UNIMOD:39	NT=TMT6plex;TA=K;MT=Fixed;AC=UNIMOD:737	NT=TMT6plex;PP=Any N-term;MT=Fixed;AC=UNIMOD:737	AC=MS:1001313;NT=Trypsin	NT=HCD;AC=PRIDE:0000590	not available	not available	SP=Yeast;CT=protein;AC=P00924;QY=2.5	SP=BOVIN;CT=protein;AC=P02769;QY=5	SP=RABIT;CT=protein;AC=P00489;QY=1	SP=BOVIN;CT=protein;AC=P62894;QY=1
Sample 6	Dickeya chrysanthemi	whole plant	not available	not available	not available	not applicable	not available	not applicable	1	SP=Yeast;CT=protein;AC=P00924;QY=10	SP=BOVIN;CT=protein;AC=P02769;QY=1	SP=RABIT;CT=protein;AC=P00489;QY=1	SP=BOVIN;CT=protein;AC=P62894;QY=2	not available	1	cell	run 1	proteomic profiling by mass spectrometry	TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.raw	1	1	TMT131	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Oxidation;MT=Variable;TA=M;AC=Unimod:35	NT=Methylthio;TA=C;MT=fixed;AC=UNIMOD:39	NT=TMT6plex;TA=K;MT=Fixed;AC=UNIMOD:737	NT=TMT6plex;PP=Any N-term;MT=Fixed;AC=UNIMOD:737	AC=MS:1001313;NT=Trypsin	NT=HCD;AC=PRIDE:0000590	not available	not available	SP=Yeast;CT=protein;AC=P00924;QY=10	SP=BOVIN;CT=protein;AC=P02769;QY=1	SP=RABIT;CT=protein;AC=P00489;QY=1	SP=BOVIN;CT=protein;AC=P62894;QY=2