{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Change up the version numbers appropriately in the line below to get the version of Netlogo you want to work with."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n",
      "                                 Dload  Upload   Total   Spent    Left  Speed\n",
      "100  191M  100  191M    0     0  40.9M      0  0:00:04  0:00:04 --:--:-- 40.9M\n"
     ]
    }
   ],
   "source": [
    "!curl http://ccl.northwestern.edu/netlogo/6.0.4/NetLogo-6.0.4-64.tgz > NetLogo.tgz\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Unzip the file:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "!tar -xzf NetLogo.tgz"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Having now unzipped Netlogo, we're going to rename it to remove the spaces in the directory name. Spaces can cause problems."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "!mv 'NetLogo 6.0.4' 'NetLogo6.0.4'"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Finally, we have a 'bash' script that we are going to be using in Step 2. The Step 2 notebook lets us use dropdown menus to configure the experiment we want to run. Then, when we hit the 'run experiment' button, the notebook will pass our settings to the `run-abm-script`. But first, we have to tell the machine that this *is* a script in the first place. We do that by changing its permissions."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "!chmod 755 run-abm-script"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Remember what we said above about spaces in directory names can cause troubles? There are lots of directories in NetLogo that have spaces in the name. We're going to search *everything* and replace the space with an underscore:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "!find . -depth -name '* *' \\\n",
    "| while IFS= read -r f ; do mv -i \"$f\" \"$(dirname \"$f\")/$(basename \"$f\"|tr ' ' _)\" ; done"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Now we're ready. Proceed to Step 2!"
   ]
  }
 ],
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