Ascomycete Phenotype Ontology (APO)
type: Ontology
version IRI: apo.owl
contributor: Maria Costanzo
contributor: Suzi Aleksander
creator: www.yeastgenome.org
description: A structured controlled vocabulary for the phenotypes of Ascomycete fungi.
modified: 02:01:2021
license: http://creativecommons.org/licenses/by/4.0/
namespace-id-rule: * APO:$sequence(7,0000001,9999999)$
auto-generated-by: OBO-Edit 2.1
date: 02:02:2021 14:22
default-namespace: ascomycete_phenotype_ontology
has_obo_format_version: 1.2
comment: Filtered by Subset contains "SGD"; contact sgd-helpdesk@lists.stanford.edu
version info: 2026-01-12

definition
type: AnnotationProperty

term replaced by
type: AnnotationProperty

AspGD
type: AnnotationProperty
comment: APO terms in use at AspGD
sub property of: subset_property

CGD
type: AnnotationProperty
comment: APO terms in use at CGD
sub property of: subset_property

CryptoGD
type: AnnotationProperty
comment: APO terms in use at CryptoGD
sub property of: subset_property

SGD
type: AnnotationProperty
comment: APO terms in use at SGD
sub property of: subset_property

phenotypeslim cerevisiae
type: AnnotationProperty
comment: Phenotype Slim terms for S. cerevisiae
sub property of: subset_property

namespace-id-rule
type: AnnotationProperty

subset_property
type: AnnotationProperty

consider
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

in_subset
type: AnnotationProperty

qualifier
type: Class
definition: The direction of change in the mutant compared to wild type.
has_alternative_id: YPO:0000001
has_obo_namespace: qualifier
id: APO:0000001
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: qualifier
annotated property: definition
annotated target: The direction of change in the mutant compared to wild type.
database_cross_reference: SGD:curators

abnormal
type: Class
subclass of: qualifier
definition: The observed phenotype is detectably different from that in the wild type.
has_alternative_id: YPO:0000002
has_obo_namespace: qualifier
id: APO:0000002
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: abnormal
annotated property: definition
annotated target: The observed phenotype is detectably different from that in the wild type.
database_cross_reference: SGD:curators

decreased
type: Class
subclass of: abnormal
definition: The observed feature is decreased compared to that in the wild type (slower, weaker, lower, smaller, etc.).
has_alternative_id: YPO:0000003
has_obo_namespace: qualifier
id: APO:0000003
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: decreased
annotated property: definition
annotated target: The observed feature is decreased compared to that in the wild type (slower, weaker, lower, smaller, etc.).
database_cross_reference: SGD:curators

increased
type: Class
subclass of: abnormal
definition: The observed feature is increased compared to that in the wild type (faster, stronger, higher, larger, etc.).
has_alternative_id: YPO:0000004
has_obo_namespace: qualifier
id: APO:0000004
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: increased
annotated property: definition
annotated target: The observed feature is increased compared to that in the wild type (faster, stronger, higher, larger, etc.).
database_cross_reference: SGD:curators

absent
type: Class
subclass of: decreased
definition: The observed feature is not detectable in the mutant.
has_alternative_id: YPO:0000005
has_obo_namespace: qualifier
id: APO:0000005
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: absent
annotated property: definition
annotated target: The observed feature is not detectable in the mutant.
database_cross_reference: SGD:curators

mutant_type
type: Class
definition: A description of the effect of the mutation on the gene product function.
has_alternative_id: YPO:0000006
has_obo_namespace: mutant_type
id: APO:0000006
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mutant_type
annotated property: definition
annotated target: A description of the effect of the mutation on the gene product function.
database_cross_reference: SGD:curators

misexpression
type: Class
subclass of: mutant_type
definition: The mutation results in expression of the gene product at a developmental stage, in a cell type, or at a subcellular location different from that at which the wild-type gene is expressed.
has_alternative_id: YPO:0000007
has_obo_namespace: mutant_type
id: APO:0000007
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: misexpression
annotated property: definition
annotated target: The mutation results in expression of the gene product at a developmental stage, in a cell type, or at a subcellular location different from that at which the wild-type gene is expressed.
database_cross_reference: SGD:curators

overexpression
type: Class
subclass of: mutant_type
definition: The mutation causes expression of the otherwise normal gene product to higher levels than wild-type.
has_alternative_id: YPO:0000008
has_obo_namespace: mutant_type
id: APO:0000008
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: overexpression
annotated property: definition
annotated target: The mutation causes expression of the otherwise normal gene product to higher levels than wild-type.
database_cross_reference: SGD:curators

activation
type: Class
subclass of: mutant_type
definition: The mutation increases the normal activity of a gene product.
has_alternative_id: YPO:0000009
has_obo_namespace: mutant_type
id: APO:0000009
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: activation
annotated property: definition
annotated target: The mutation increases the normal activity of a gene product.
database_cross_reference: SGD:curators

gain of function
type: Class
subclass of: mutant_type
definition: The mutation confers a new activity on the gene product.
has_alternative_id: YPO:0000010
has_obo_namespace: mutant_type
id: APO:0000010
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: gain of function
annotated property: definition
annotated target: The mutation confers a new activity on the gene product.
database_cross_reference: SGD:curators

null mutant
type: Class
subclass of: mutant_type
definition: The mutation abolishes completely the function of the gene product.
has_alternative_id: YPO:0000011
has_exact_synonym: null
has_obo_namespace: mutant_type
has_related_synonym: loss of function
id: APO:0000011
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: null mutant
annotated property: definition
annotated target: The mutation abolishes completely the function of the gene product.
database_cross_reference: SGD:RSN

Axiom
annotated source: null mutant
annotated property: has_related_synonym
annotated target: loss of function
database_cross_reference: SGD:RSN

repressible
type: Class
subclass of: mutant_type
definition: The mutation leads to reduction of levels of the gene product, often through the use of a repressible promoter.
has_alternative_id: YPO:0000012
has_exact_synonym: depletion
has_obo_namespace: mutant_type
id: APO:0000012
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: repressible
annotated property: definition
annotated target: The mutation leads to reduction of levels of the gene product, often through the use of a repressible promoter.
database_cross_reference: SGD:RSN

Axiom
annotated source: repressible
annotated property: has_exact_synonym
annotated target: depletion
database_cross_reference: SGD:RSN

reduction of function
type: Class
subclass of: mutant_type
definition: The mutation reduces the activity of the gene product.
has_alternative_id: YPO:0000013
has_obo_namespace: mutant_type
id: APO:0000013
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: reduction of function
annotated property: definition
annotated target: The mutation reduces the activity of the gene product.
database_cross_reference: SGD:curators

conditional
type: Class
subclass of: mutant_type
definition: The activity of the gene product is normal under some conditions and altered under others.
has_alternative_id: YPO:0000014
has_obo_namespace: mutant_type
id: APO:0000014
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: conditional
annotated property: definition
annotated target: The activity of the gene product is normal under some conditions and altered under others.
database_cross_reference: SGD:curators

unspecified
type: Class
subclass of: mutant_type
definition: The mutation type is not specified in the reference.
has_alternative_id: YPO:0000015
has_obo_namespace: mutant_type
id: APO:0000015
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: unspecified
annotated property: definition
annotated target: The mutation type is not specified in the reference.
database_cross_reference: SGD:curators

not yet recorded
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
has_alternative_id: YPO:0000016
has_obo_namespace: mutant_type
id: APO:0000016
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because there was overlap with another term unspecified. The term unspecified will be used in cases where a more appropriate descriptor cannot be identified.
deprecated: true

Axiom
annotated source: not yet recorded
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

observable
type: Class
definition: Features of ascomycete fungal cells, cultures, or colonies that can be detected, observed, measured, or monitored.
has_alternative_id: YPO:0000017
has_obo_namespace: observable
id: APO:0000017
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: observable
annotated property: definition
annotated target: Features of ascomycete fungal cells, cultures, or colonies that can be detected, observed, measured, or monitored.
database_cross_reference: SGD:curators

experiment_type
type: Class
definition: A description of the experimental approach.
has_alternative_id: YPO:0000018
has_obo_namespace: experiment_type
id: APO:0000018
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: experiment_type
annotated property: definition
annotated target: A description of the experimental approach.
database_cross_reference: SGD:curators

systematic null mutation set
type: Class
definition: OBSOLETE. Robotic generation and analysis of large-scale, genome-wide knockout sets.
term replaced by: APO:0000011
term replaced by: APO:0000235
has_alternative_id: YPO:0000019
has_obo_namespace: experiment_type
id: APO:0000019
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete as it is a compound term containing information on the both the scope of the experiment as well as the mutant type.
deprecated: true

Axiom
annotated source: systematic null mutation set
annotated property: definition
annotated target: OBSOLETE. Robotic generation and analysis of large-scale, genome-wide knockout sets.
database_cross_reference: SGD:RSN

classical genetics
type: Class
subclass of: phenotype assays
definition: Phenotypic analysis of one or a few mutant strains in small-scale, focused experiments that do not require knowledge of the entire genome sequence.
has_alternative_id: YPO:0000020
has_obo_namespace: experiment_type
id: APO:0000020
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: classical genetics
annotated property: definition
annotated target: Phenotypic analysis of one or a few mutant strains in small-scale, focused experiments that do not require knowledge of the entire genome sequence.
database_cross_reference: SGD:curators

competitive growth
type: Class
subclass of: large-scale survey
definition: Quantitative data on survival of a mutant strain, obtained in large scale experiments where mutants are grown together with wild type or other mutants for many generations.
has_alternative_id: YPO:0000021
has_obo_namespace: experiment_type
id: APO:0000021
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: competitive growth
annotated property: definition
annotated target: Quantitative data on survival of a mutant strain, obtained in large scale experiments where mutants are grown together with wild type or other mutants for many generations.
database_cross_reference: SGD:curators

protein activity
type: Class
subclass of: metabolism and growth
definition: The enzymatic or other activity of a protein.
has_alternative_id: YPO:0000022
has_obo_namespace: observable
id: APO:0000022
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: protein activity
annotated property: definition
annotated target: The enzymatic or other activity of a protein.
database_cross_reference: SGD:curators

development
type: Class
subclass of: observable
definition: Developmental processes.
has_alternative_id: YPO:0000023
has_obo_namespace: observable
id: APO:0000023
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: development
annotated property: definition
annotated target: Developmental processes.
database_cross_reference: SGD:mcc

budding
type: Class
subclass of: development
definition: The formation of a bud, which develops into a daughter cell during asexual reproduction.
has_alternative_id: YPO:0000024
has_obo_namespace: observable
id: APO:0000024
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: budding
annotated property: definition
annotated target: The formation of a bud, which develops into a daughter cell during asexual reproduction.
database_cross_reference: SGD:mcc

axial budding pattern
type: Class
subclass of: budding pattern
definition: Localization of the newly emerging bud near the site of the previous bud.
has_alternative_id: YPO:0000025
has_obo_namespace: observable
has_related_synonym: haploid budding pattern
id: APO:0000025
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: axial budding pattern
annotated property: definition
annotated target: Localization of the newly emerging bud near the site of the previous bud.
database_cross_reference: SGD:RSN

Axiom
annotated source: axial budding pattern
annotated property: has_related_synonym
annotated target: haploid budding pattern
database_cross_reference: SGD:RSN

bipolar budding pattern
type: Class
subclass of: budding pattern
definition: Localization of the emerging bud at the cell pole opposite the previous bud site.
has_alternative_id: YPO:0000026
has_obo_namespace: observable
has_related_synonym: diploid budding pattern
id: APO:0000026
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: bipolar budding pattern
annotated property: definition
annotated target: Localization of the emerging bud at the cell pole opposite the previous bud site.
database_cross_reference: SGD:RSN

Axiom
annotated source: bipolar budding pattern
annotated property: has_related_synonym
annotated target: diploid budding pattern
database_cross_reference: SGD:RSN

filamentous growth
type: Class
subclass of: development
definition: Growth in a threadlike, filamentous shape.
has_alternative_id: YPO:0000027
has_obo_namespace: observable
id: APO:0000027
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: filamentous growth
annotated property: definition
annotated target: Growth in a threadlike, filamentous shape.
database_cross_reference: SGD:mcc

invasive growth
type: Class
subclass of: filamentous growth
definition: Penetration of cells into a solid substrate during filamentous growth.
has_alternative_id: YPO:0000028
has_obo_namespace: observable
id: APO:0000028
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: invasive growth
annotated property: definition
annotated target: Penetration of cells into a solid substrate during filamentous growth.
database_cross_reference: SGD:rsn

pseudohyphal growth
type: Class
subclass of: filamentous growth
definition: Growth in a pattern that occurs in conditions of nitrogen limitation and abundant fermentable carbon source. Cells become elongated, switch to a unipolar budding pattern, remain physically attached to each other, and invade the growth substrate.
has_alternative_id: YPO:0000029
has_obo_namespace: observable
id: APO:0000029
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: pseudohyphal growth
annotated property: definition
annotated target: Growth in a pattern that occurs in conditions of nitrogen limitation and abundant fermentable carbon source. Cells become elongated, switch to a unipolar budding pattern, remain physically attached to each other, and invade the growth substrate.
database_cross_reference: SGD:krc

lifespan
type: Class
subclass of: development
definition: The duration of the life of an individual organism.
has_alternative_id: YPO:0000030
has_obo_namespace: observable
id: APO:0000030
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: lifespan
annotated property: definition
annotated target: The duration of the life of an individual organism.
database_cross_reference: SGD:mcc

sexual cycle
type: Class
subclass of: development
definition: The process of sexual reproduction.
has_alternative_id: YPO:0000031
has_obo_namespace: observable
id: APO:0000031
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: sexual cycle
annotated property: definition
annotated target: The process of sexual reproduction.
database_cross_reference: SGD:mcc

mating response
type: Class
subclass of: sexual cycle
definition: The interaction between organisms leading to mating.
has_alternative_id: YPO:0000032
has_obo_namespace: observable
id: APO:0000032
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mating response
annotated property: definition
annotated target: The interaction between organisms leading to mating.
database_cross_reference: SGD:mcc

cell fusion
type: Class
subclass of: mating response
definition: The fusion of individual cells from each partner during mating.
has_alternative_id: YPO:0000033
has_obo_namespace: observable
id: APO:0000033
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell fusion
annotated property: definition
annotated target: The fusion of individual cells from each partner during mating.
database_cross_reference: SGD:mcc

mating efficiency
type: Class
subclass of: mating response
definition: The proportion of cells within a population that are able to mate.
has_alternative_id: YPO:0000034
has_obo_namespace: observable
id: APO:0000034
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mating efficiency
annotated property: definition
annotated target: The proportion of cells within a population that are able to mate.
database_cross_reference: SGD:mcc

nuclear fusion during mating
type: Class
subclass of: mating response
definition: The fusion of the nuclei of two mating cells.
has_alternative_id: YPO:0000035
has_exact_synonym: karyogamy
has_obo_namespace: observable
id: APO:0000035
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nuclear fusion during mating
annotated property: definition
annotated target: The fusion of the nuclei of two mating cells.
database_cross_reference: SGD:mcc

pheromone production
type: Class
subclass of: mating response
definition: The production of mating pheromones.
has_alternative_id: YPO:0000036
has_obo_namespace: observable
id: APO:0000036
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: pheromone production
annotated property: definition
annotated target: The production of mating pheromones.
database_cross_reference: SGD:mcc

pheromone sensitivity
type: Class
subclass of: mating response
definition: Sensitivity to mating pheromones produced by cells of the opposite mating type.
has_alternative_id: YPO:0000037
has_obo_namespace: observable
id: APO:0000037
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: pheromone sensitivity
annotated property: definition
annotated target: Sensitivity to mating pheromones produced by cells of the opposite mating type.
database_cross_reference: SGD:mcc

shmoo formation
type: Class
subclass of: mating response
definition: An alteration of morphology such that the cell has a mating projection, formed in response to mating pheromone by cells of Saccharomyces and other fungi with similar life cycles. Named after the Al Capp cartoon character, whose shape it resembles.
has_alternative_id: YPO:0000038
has_obo_namespace: observable
id: APO:0000038
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: shmoo formation
annotated property: definition
annotated target: An alteration of morphology such that the cell has a mating projection, formed in response to mating pheromone by cells of Saccharomyces and other fungi with similar life cycles. Named after the Al Capp cartoon character, whose shape it resembles.
database_cross_reference: SGD:mcc

meiosis
type: Class
subclass of: sexual cycle
definition: A specialized cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell.
has_alternative_id: YPO:0000039
has_obo_namespace: observable
id: APO:0000039
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: meiosis
annotated property: definition
annotated target: A specialized cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell.
database_cross_reference: GOC:dph

meiotic recombination
type: Class
subclass of: meiosis
definition: The exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes during meiosis.
has_alternative_id: YPO:0000040
has_obo_namespace: observable
id: APO:0000040
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: meiotic recombination
annotated property: definition
annotated target: The exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes during meiosis.
database_cross_reference: SGD:mcc

sporulation
type: Class
subclass of: sexual cycle
definition: The formation of ascospores, which are the products of meiosis.
has_alternative_id: YPO:0000041
has_obo_namespace: observable
id: APO:0000041
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: sporulation
annotated property: definition
annotated target: The formation of ascospores, which are the products of meiosis.
database_cross_reference: SGD:mcc

spore germination
type: Class
subclass of: sporulation
definition: The production of viable cells arising from sexual spores.
has_alternative_id: YPO:0000042
has_obo_namespace: observable
id: APO:0000042
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: spore germination
annotated property: definition
annotated target: The production of viable cells arising from sexual spores.
database_cross_reference: SGD:mcc

spore wall formation
type: Class
subclass of: sporulation
definition: The biogenesis of specialized cell walls around developing ascospores.
has_alternative_id: YPO:0000043
has_obo_namespace: observable
id: APO:0000043
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: spore wall formation
annotated property: definition
annotated target: The biogenesis of specialized cell walls around developing ascospores.
database_cross_reference: SGD:mcc

sporulation efficiency
type: Class
subclass of: sporulation
definition: The percentage of diploid cells in a population that undergo meiosis and form spores under sporulation-inducing conditions.
has_alternative_id: YPO:0000044
has_obo_namespace: observable
id: APO:0000044
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: sporulation efficiency
annotated property: definition
annotated target: The percentage of diploid cells in a population that undergo meiosis and form spores under sporulation-inducing conditions.
database_cross_reference: SGD:mcc

sterile
type: Class
subclass of: sexual cycle
definition: The sterile phenotype is the inability to mate with cells of the opposite mating type under conditions that normally promote mating.
has_alternative_id: YPO:0000045
has_obo_namespace: observable
id: APO:0000045
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: sterile
annotated property: definition
annotated target: The sterile phenotype is the inability to mate with cells of the opposite mating type under conditions that normally promote mating.
database_cross_reference: SGD:mcc

silencing
type: Class
subclass of: chromosome/plasmid maintenance
definition: Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
has_alternative_id: YPO:0000046
has_obo_namespace: observable
id: APO:0000046
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: silencing
annotated property: definition
annotated target: Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
database_cross_reference: GOC:mah

transposable element transposition
type: Class
subclass of: chromosome/plasmid maintenance
definition: Integration of a transposable element into new positions in the genome.
has_alternative_id: YPO:0000047
has_obo_namespace: observable
id: APO:0000047
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: transposable element transposition
annotated property: definition
annotated target: Integration of a transposable element into new positions in the genome.
database_cross_reference: SGD:mcc

virulence
type: Class
subclass of: interaction with host/environment
definition: The ability to cause disease in another organism.
has_alternative_id: YPO:0000048
has_obo_namespace: observable
id: APO:0000048
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: virulence
annotated property: definition
annotated target: The ability to cause disease in another organism.
database_cross_reference: SGD:mcc

morphology
type: Class
subclass of: observable
definition: The size or shape of subcellular structures, cells, or multicellular structures.
has_alternative_id: YPO:0000049
has_obo_namespace: observable
id: APO:0000049
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: morphology
annotated property: definition
annotated target: The size or shape of subcellular structures, cells, or multicellular structures.
database_cross_reference: SGD:mcc

cellular morphology
type: Class
subclass of: morphology
definition: The size or shape of cells.
has_alternative_id: YPO:0000050
has_obo_namespace: observable
id: APO:0000050
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: cellular morphology
annotated property: definition
annotated target: The size or shape of cells.
database_cross_reference: SGD:mcc

cell shape
type: Class
subclass of: cellular morphology
definition: The shape of the cell.
has_alternative_id: YPO:0000051
has_obo_namespace: observable
id: APO:0000051
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell shape
annotated property: definition
annotated target: The shape of the cell.
database_cross_reference: SGD:mcc

cell size
type: Class
subclass of: cellular morphology
definition: The size of the cell.
has_alternative_id: YPO:0000052
has_obo_namespace: observable
id: APO:0000052
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell size
annotated property: definition
annotated target: The size of the cell.
database_cross_reference: SGD:mcc

cell wall morphology
type: Class
subclass of: subcellular morphology
definition: The size, shape, or appearance of the cell wall.
has_alternative_id: YPO:0000053
has_obo_namespace: observable
id: APO:0000053
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell wall morphology
annotated property: definition
annotated target: The size, shape, or appearance of the cell wall.
database_cross_reference: SGD:mcc

cytoskeleton morphology
type: Class
subclass of: subcellular morphology
definition: The size, shape, or appearance of the cytoskeleton.
has_alternative_id: YPO:0000054
has_obo_namespace: observable
id: APO:0000054
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cytoskeleton morphology
annotated property: definition
annotated target: The size, shape, or appearance of the cytoskeleton.
database_cross_reference: SGD:mcc

mitochondrial morphology
type: Class
subclass of: subcellular morphology
definition: The size, shape, or appearance of the mitochondria.
has_alternative_id: YPO:0000055
has_obo_namespace: observable
id: APO:0000055
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mitochondrial morphology
annotated property: definition
annotated target: The size, shape, or appearance of the mitochondria.
database_cross_reference: SGD:mcc

bud neck morphology
type: Class
subclass of: cellular morphology
definition: The size or shape of the bud neck, which is the region where the bud joins the mother cell.
has_alternative_id: YPO:0000056
has_obo_namespace: observable
id: APO:0000056
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: bud neck morphology
annotated property: definition
annotated target: The size or shape of the bud neck, which is the region where the bud joins the mother cell.
database_cross_reference: SGD:mcc

nuclear morphology
type: Class
subclass of: endomembrane system morphology
definition: The size, shape, or appearance of the nucleus.
has_alternative_id: YPO:0000057
has_obo_namespace: observable
id: APO:0000057
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nuclear morphology
annotated property: definition
annotated target: The size, shape, or appearance of the nucleus.
database_cross_reference: SGD:mcc

peroxisomal morphology
type: Class
subclass of: endomembrane system morphology
definition: The size, shape, or appearance of the peroxisomes.
has_alternative_id: YPO:0000058
has_obo_namespace: observable
id: APO:0000058
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: peroxisomal morphology
annotated property: definition
annotated target: The size, shape, or appearance of the peroxisomes.
database_cross_reference: SGD:mcc

vacuolar morphology
type: Class
subclass of: endomembrane system morphology
definition: The size, shape, or appearance of the vacuole.
has_alternative_id: YPO:0000059
has_obo_namespace: observable
id: APO:0000059
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: vacuolar morphology
annotated property: definition
annotated target: The size, shape, or appearance of the vacuole.
database_cross_reference: SGD:mcc

colony appearance
type: Class
subclass of: culture appearance
definition: The appearance of colonies of cells growing on a solid substrate.
has_alternative_id: YPO:0000060
has_obo_namespace: observable
id: APO:0000060
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: colony appearance
annotated property: definition
annotated target: The appearance of colonies of cells growing on a solid substrate.
database_cross_reference: SGD:mcc

colony color
type: Class
subclass of: colony appearance
definition: The color of colonies of cells growing on a solid substrate.
has_alternative_id: YPO:0000061
has_obo_namespace: observable
id: APO:0000061
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: colony color
annotated property: definition
annotated target: The color of colonies of cells growing on a solid substrate.
database_cross_reference: SGD:mcc

colony shape
type: Class
subclass of: colony appearance
definition: The shape of colonies of cells growing on a solid substrate.
has_alternative_id: YPO:0000062
has_obo_namespace: observable
id: APO:0000062
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: colony shape
annotated property: definition
annotated target: The shape of colonies of cells growing on a solid substrate.
database_cross_reference: SGD:mcc

colony size
type: Class
subclass of: colony appearance
definition: The size of colonies of cells growing on a solid substrate.
has_alternative_id: YPO:0000063
has_obo_namespace: observable
id: APO:0000063
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: colony size
annotated property: definition
annotated target: The size of colonies of cells growing on a solid substrate.
database_cross_reference: SGD:mcc

liquid culture appearance
type: Class
subclass of: culture appearance
definition: The appearance of a liquid culture of cells.
has_alternative_id: YPO:0000064
has_obo_namespace: observable
id: APO:0000064
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: liquid culture appearance
annotated property: definition
annotated target: The appearance of a liquid culture of cells.
database_cross_reference: SGD:mcc

flocculation
type: Class
subclass of: liquid culture appearance
definition: Adhesion and aggregation of cells in liquid culture to produce clumps of cells.
has_alternative_id: YPO:0000065
has_obo_namespace: observable
id: APO:0000065
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: flocculation
annotated property: definition
annotated target: Adhesion and aggregation of cells in liquid culture to produce clumps of cells.
database_cross_reference: SGD:mcc

cellular processes
type: Class
subclass of: observable
definition: Processes occurring at the cellular level.
has_alternative_id: YPO:0000066
has_obo_namespace: observable
id: APO:0000066
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cellular processes
annotated property: definition
annotated target: Processes occurring at the cellular level.
database_cross_reference: AspGD:mcc

cell cycle arrest in G1 phase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000255
has_alternative_id: YPO:0000067
has_obo_namespace: observable
id: APO:0000067
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in G1 phase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest at G2 phase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000254
has_alternative_id: YPO:0000068
has_obo_namespace: observable
id: APO:0000068
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest at G2 phase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest at START
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000256
has_alternative_id: YPO:0000069
has_obo_namespace: observable
id: APO:0000069
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest at START
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000253
has_alternative_id: YPO:0000070
has_obo_namespace: observable
id: APO:0000070
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cytokinesis
type: Class
subclass of: mitotic cell cycle
definition: The division of the cytoplasm and the plasma membrane of a cell and its separation into two daughter cells.
has_alternative_id: YPO:0000071
has_obo_namespace: observable
id: APO:0000071
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cytokinesis
annotated property: definition
annotated target: The division of the cytoplasm and the plasma membrane of a cell and its separation into two daughter cells.
database_cross_reference: GOC:mtg_cell_cycle

mitotic cell cycle
type: Class
subclass of: cellular processes
definition: A cycle of DNA replication and cell division via mitosis.
has_alternative_id: YPO:0000072
has_obo_namespace: observable
id: APO:0000072
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: mitotic cell cycle
annotated property: definition
annotated target: A cycle of DNA replication and cell division via mitosis.
database_cross_reference: SGD:mcc

intracellular transport
type: Class
subclass of: cellular processes
definition: Transport of substances within cells.
has_alternative_id: YPO:0000073
has_obo_namespace: observable
id: APO:0000073
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: intracellular transport
annotated property: definition
annotated target: Transport of substances within cells.
database_cross_reference: SGD:mcc

autophagy
type: Class
subclass of: intracellular transport
definition: The delivery and degradation of autophagy markers to the vacuole via the autophagic pathway.
has_alternative_id: YPO:0000074
has_obo_namespace: observable
id: APO:0000074
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: autophagy
annotated property: definition
annotated target: The delivery and degradation of autophagy markers to the vacuole via the autophagic pathway.
database_cross_reference: SGD:curators

endocytosis
type: Class
subclass of: intracellular transport
definition: The uptake and delivery of external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
has_alternative_id: YPO:0000075
has_obo_namespace: observable
id: APO:0000075
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: endocytosis
annotated property: definition
annotated target: The uptake and delivery of external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
database_cross_reference: SGD:curators

mitochondrial transport
type: Class
subclass of: protein transport
definition: Import of proteins into mitochondria.
has_alternative_id: YPO:0000076
has_obo_namespace: observable
id: APO:0000076
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mitochondrial transport
annotated property: definition
annotated target: Import of proteins into mitochondria.
database_cross_reference: SGD:mcc

nuclear transport
type: Class
subclass of: protein transport
definition: Transport of proteins or RNAs into or out of the nucleus.
has_alternative_id: YPO:0000077
has_obo_namespace: observable
id: APO:0000077
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nuclear transport
annotated property: definition
annotated target: Transport of proteins or RNAs into or out of the nucleus.
database_cross_reference: SGD:mcc

protein secretion
type: Class
subclass of: protein transport
definition: Transport of proteins out of the cell by fusion of a membrane-bounded vesicle containing the proteins by fusion of the vesicle with the plasma membrane.
has_alternative_id: YPO:0000078
has_obo_namespace: observable
has_related_synonym: exocytosis
id: APO:0000078
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: protein secretion
annotated property: definition
annotated target: Transport of proteins out of the cell by fusion of a membrane-bounded vesicle containing the proteins by fusion of the vesicle with the plasma membrane.
database_cross_reference: SGD:mcc

vacuolar transport
type: Class
subclass of: protein transport
definition: Transport of proteins into the vacuole.
has_alternative_id: YPO:0000079
has_obo_namespace: observable
id: APO:0000079
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: vacuolar transport
annotated property: definition
annotated target: Transport of proteins into the vacuole.
database_cross_reference: SGD:mcc

stress resistance
type: Class
subclass of: cellular processes
definition: The level of resistance to stress conditions.
has_alternative_id: YPO:0000080
has_exact_synonym: resistance to stress
has_obo_namespace: observable
id: APO:0000080
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: stress resistance
annotated property: definition
annotated target: The level of resistance to stress conditions.
database_cross_reference: SGD:mcc

killer toxin resistance
type: Class
subclass of: toxin resistance
definition: The level of resistance to killer toxin, which is encoded on double-stranded RNA viruses carried by some yeast strains.
has_alternative_id: YPO:0000081
has_exact_synonym: resistance to killer toxin
has_obo_namespace: observable
id: APO:0000081
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: killer toxin resistance
annotated property: definition
annotated target: The level of resistance to killer toxin, which is encoded on double-stranded RNA viruses carried by some yeast strains.
database_cross_reference: SGD:mcc

osmotic stress resistance
type: Class
subclass of: resistance to chemicals
definition: The level of resistance to high or low osmolarity.
has_alternative_id: YPO:0000082
has_exact_synonym: resistance to osmotic stress
has_obo_namespace: observable
id: APO:0000082
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: osmotic stress resistance
annotated property: definition
annotated target: The level of resistance to high or low osmolarity.
database_cross_reference: SGD:mcc

oxidative stress resistance
type: Class
subclass of: resistance to chemicals
definition: The level of resistance to oxidative stress.
has_alternative_id: YPO:0000083
has_exact_synonym: resistance to oxidative stress
has_obo_namespace: observable
id: APO:0000083
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: oxidative stress resistance
annotated property: definition
annotated target: The level of resistance to oxidative stress.
database_cross_reference: SGD:mcc

radiation resistance
type: Class
subclass of: stress resistance
definition: The level of resistance to radiation.
has_alternative_id: YPO:0000084
has_exact_synonym: resistance to radiation
has_obo_namespace: observable
id: APO:0000084
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: radiation resistance
annotated property: definition
annotated target: The level of resistance to radiation.
database_cross_reference: SGD:mcc

UV resistance
type: Class
subclass of: radiation resistance
definition: The level of resistance to ultraviolet radiation.
has_alternative_id: YPO:0000085
has_exact_synonym: resistance to UV
has_obo_namespace: observable
id: APO:0000085
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: UV resistance
annotated property: definition
annotated target: The level of resistance to ultraviolet radiation.
database_cross_reference: SGD:mcc

X ray resistance
type: Class
subclass of: ionizing radiation resistance
definition: The level of resistance to X ray exposure.
has_alternative_id: YPO:0000086
has_exact_synonym: resistance to X rays
has_obo_namespace: observable
id: APO:0000086
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: X ray resistance
annotated property: definition
annotated target: The level of resistance to X ray exposure.
database_cross_reference: SGD:mcc

resistance to chemicals
type: Class
subclass of: stress resistance
definition: The level of resistance to exposure to chemicals.
has_alternative_id: YPO:0000087
has_obo_namespace: observable
id: APO:0000087
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: resistance to chemicals
annotated property: definition
annotated target: The level of resistance to exposure to chemicals.
database_cross_reference: SGD:mcc

drug resistance
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
term replaced by: APO:0000087
has_alternative_id: YPO:0000088
has_obo_namespace: observable
id: APO:0000088
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete, as resistance to chemicals was deemed a better choice.
deprecated: true

Axiom
annotated source: drug resistance
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

budding index
type: Class
subclass of: budding
definition: The percentage or fraction of budded cells in a population.
has_alternative_id: YPO:0000089
has_obo_namespace: observable
id: APO:0000089
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: budding index
annotated property: definition
annotated target: The percentage or fraction of budded cells in a population.
database_cross_reference: SGD:curators

metal resistance
type: Class
subclass of: resistance to chemicals
definition: The level of resistance to a specific metal or metals.
has_alternative_id: YPO:0000090
has_exact_synonym: resistance to metal
has_obo_namespace: observable
id: APO:0000090
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: metal resistance
annotated property: definition
annotated target: The level of resistance to a specific metal or metals.
database_cross_reference: SGD:mcc

starvation resistance
type: Class
subclass of: stress resistance
definition: The level of resistance to starvation conditions.
has_alternative_id: YPO:0000091
has_exact_synonym: resistance to starvation
has_obo_namespace: observable
id: APO:0000091
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: starvation resistance
annotated property: definition
annotated target: The level of resistance to starvation conditions.
database_cross_reference: SGD:mcc

temperature sensitive growth
type: Class
subclass of: stress resistance
definition: Sensitivity to temperatures that are higher or lower than optimal growth temperature.
has_alternative_id: YPO:0000092
has_obo_namespace: observable
id: APO:0000092
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: temperature sensitive growth
annotated property: definition
annotated target: Sensitivity to temperatures that are higher or lower than optimal growth temperature.
database_cross_reference: SGD:mcc

thermotolerance
type: Class
subclass of: stress resistance
definition: The ability to survive a period of exposure to extremely high temperature (heat shock).
has_alternative_id: YPO:0000093
has_obo_namespace: observable
id: APO:0000093
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: thermotolerance
annotated property: definition
annotated target: The ability to survive a period of exposure to extremely high temperature (heat shock).
database_cross_reference: SGD:mcc

metabolism and growth
type: Class
subclass of: observable
definition: Processes relating to metabolism and growth.
has_alternative_id: YPO:0000094
has_obo_namespace: observable
id: APO:0000094
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: metabolism and growth
annotated property: definition
annotated target: Processes relating to metabolism and growth.
database_cross_reference: SGD:mcc

chemical compound accumulation
type: Class
subclass of: metabolism and growth
definition: The production and/or storage of a specified chemical compound.
has_alternative_id: YPO:0000095
has_obo_namespace: observable
id: APO:0000095
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: chemical compound accumulation
annotated property: definition
annotated target: The production and/or storage of a specified chemical compound.
database_cross_reference: SGD:curators

nutrient utilization
type: Class
subclass of: metabolism and growth
definition: The ability to utilize specified substances as nutrients.
has_alternative_id: YPO:0000096
has_obo_namespace: observable
id: APO:0000096
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nutrient utilization
annotated property: definition
annotated target: The ability to utilize specified substances as nutrients.
database_cross_reference: SGD:mcc

auxotrophy
type: Class
subclass of: nutrient utilization
definition: The inability of an organism to synthesize a specified organic compound required for its growth.
has_alternative_id: YPO:0000097
has_obo_namespace: observable
id: APO:0000097
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: auxotrophy
annotated property: definition
annotated target: The inability of an organism to synthesize a specified organic compound required for its growth.
database_cross_reference: SGD:mcc

utilization of carbon source
type: Class
subclass of: nutrient utilization
definition: The ability to utilize the specified compound as a carbon source.
has_alternative_id: YPO:0000098
has_obo_namespace: observable
id: APO:0000098
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: utilization of carbon source
annotated property: definition
annotated target: The ability to utilize the specified compound as a carbon source.
database_cross_reference: SGD:curators

utilization of nitrogen source
type: Class
subclass of: nutrient utilization
definition: The ability to utilize the specified compound as a source of nitrogen.
has_alternative_id: YPO:0000099
has_obo_namespace: observable
id: APO:0000099
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: utilization of nitrogen source
annotated property: definition
annotated target: The ability to utilize the specified compound as a source of nitrogen.
database_cross_reference: SGD:curators

nutrient uptake
type: Class
subclass of: nutrient utilization
definition: Uptake of nutrients into a cell.
has_alternative_id: YPO:0000100
has_obo_namespace: observable
id: APO:0000100
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nutrient uptake
annotated property: definition
annotated target: Uptake of nutrients into a cell.
database_cross_reference: SGD:mcc

fermentative metabolism
type: Class
subclass of: utilization of carbon source
definition: Growth with energy derived from fermentation; growth on a fermentable carbon source such as glucose.
has_alternative_id: YPO:0000101
has_obo_namespace: observable
has_related_synonym: fermentable carbon source utilization
id: APO:0000101
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: fermentative metabolism
annotated property: definition
annotated target: Growth with energy derived from fermentation; growth on a fermentable carbon source such as glucose.
database_cross_reference: SGD:RSN

Axiom
annotated source: fermentative metabolism
annotated property: has_related_synonym
annotated target: fermentable carbon source utilization
database_cross_reference: SGD:RSN

respiratory metabolism
type: Class
subclass of: utilization of carbon source
definition: Growth with energy derived from respiration; growth on a non-fermentable carbon source. Examples of non-fermentable carbon sources include glycerol, ethanol, and lactate.
has_alternative_id: YPO:0000102
has_obo_namespace: observable
has_related_synonym: non-fermentable carbon source utilization
id: APO:0000102
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: respiratory metabolism
annotated property: definition
annotated target: Growth with energy derived from respiration; growth on a non-fermentable carbon source. Examples of non-fermentable carbon sources include glycerol, ethanol, and lactate.
database_cross_reference: SGD:RSN

Axiom
annotated source: respiratory metabolism
annotated property: has_related_synonym
annotated target: non-fermentable carbon source utilization
database_cross_reference: SGD:RSN

respiratory growth rate
type: Class
definition: OBSOLETE.
consider: APO:0000309
has_alternative_id: YPO:0000103
has_obo_namespace: observable
id: APO:0000103
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD
deprecated: true

mitochondrial rho- mutation frequency
type: Class
subclass of: mitochondrial genome maintenance
definition: The frequency with rho- (rho minus) mutations occur, In this process, all of the mitochondrial genome except for a relatively short segment is lost. The retained segment is amplified and reiterated in a circular genome that is roughly the size of the wild-type genome.
has_alternative_id: YPO:0000104
has_obo_namespace: observable
id: APO:0000104
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mitochondrial rho- mutation frequency
annotated property: definition
annotated target: The frequency with rho- (rho minus) mutations occur, In this process, all of the mitochondrial genome except for a relatively short segment is lost. The retained segment is amplified and reiterated in a circular genome that is roughly the size of the wild-type genome.
database_cross_reference: SGD:mcc

mitochondrial genome maintenance
type: Class
subclass of: respiratory metabolism
definition: The maintenance of a stable and complete mitochondrial genome.
has_alternative_id: YPO:0000105
has_obo_namespace: observable
id: APO:0000105
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mitochondrial genome maintenance
annotated property: definition
annotated target: The maintenance of a stable and complete mitochondrial genome.
database_cross_reference: SGD:mcc

vegetative growth
type: Class
subclass of: metabolism and growth
definition: Growth under standard culture conditions (liquid or solid media).
has_alternative_id: YPO:0000106
has_obo_namespace: observable
id: APO:0000106
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: vegetative growth
annotated property: definition
annotated target: Growth under standard culture conditions (liquid or solid media).
database_cross_reference: SGD:curators

growth rate in exponential phase
type: Class
definition: OBSOLETE: Growth rate in liquid culture during the exponential phase.
consider: APO:0000310
has_alternative_id: YPO:0000107
has_obo_namespace: observable
id: APO:0000107
in_subset: AspGD
in_subset: SGD
deprecated: true

Axiom
annotated source: growth rate in exponential phase
annotated property: definition
annotated target: OBSOLETE: Growth rate in liquid culture during the exponential phase.
database_cross_reference: SGD:curators

growth rate in post-diauxic phase
type: Class
definition: OBSOLETE: Growth rate in liquid culture during the post-diauxic phase.
consider: APO:0000311
has_alternative_id: YPO:0000108
has_obo_namespace: observable
id: APO:0000108
in_subset: AspGD
in_subset: SGD
deprecated: true

Axiom
annotated source: growth rate in post-diauxic phase
annotated property: definition
annotated target: OBSOLETE: Growth rate in liquid culture during the post-diauxic phase.
database_cross_reference: SGD:curators

survival rate in stationary phase
type: Class
subclass of: vegetative growth
definition: The rate of survival in liquid stationary phase cultures.
has_alternative_id: YPO:0000109
has_obo_namespace: observable
id: APO:0000109
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: survival rate in stationary phase
annotated property: definition
annotated target: The rate of survival in liquid stationary phase cultures.
database_cross_reference: SGD:curators

competitive fitness
type: Class
subclass of: fitness
definition: The ability of a mutant strain to grow or survive under conditions of direct competition with wild type or other mutants.
has_alternative_id: YPO:0000110
has_obo_namespace: observable
id: APO:0000110
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: competitive fitness
annotated property: definition
annotated target: The ability of a mutant strain to grow or survive under conditions of direct competition with wild type or other mutants.
database_cross_reference: SGD:curators

viability
type: Class
subclass of: fitness
definition: The proportion of cells in a sample that are viable, i.e. able to form colonies. Often measured by spotting aliquots of a dilution series on a plate.
has_alternative_id: YPO:0000111
has_obo_namespace: observable
id: APO:0000111
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: viability
annotated property: definition
annotated target: The proportion of cells in a sample that are viable, i.e. able to form colonies. Often measured by spotting aliquots of a dilution series on a plate.
database_cross_reference: SGD:curators

inviable
type: Class
subclass of: essentiality
definition: The inability to grow under standard growth conditions. For S. cerevisiae, this means that visible colonies are not formed from single cells on complete glucose medium (YPD) plates at 30 deg C under normal atmospheric conditions.
has_alternative_id: YPO:0000112
has_obo_namespace: observable
id: APO:0000112
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: inviable
annotated property: definition
annotated target: The inability to grow under standard growth conditions. For S. cerevisiae, this means that visible colonies are not formed from single cells on complete glucose medium (YPD) plates at 30 deg C under normal atmospheric conditions.
database_cross_reference: SGD:curators

viable
type: Class
subclass of: essentiality
definition: The ability to grow under standard growth conditions. For S. cerevisiae, this means that visible colonies are formed from single cells on complete glucose medium (YPD) plates at 30 deg C under normal atmospheric conditions.
has_alternative_id: YPO:0000113
has_obo_namespace: observable
id: APO:0000113
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: viable
annotated property: definition
annotated target: The ability to grow under standard growth conditions. For S. cerevisiae, this means that visible colonies are formed from single cells on complete glucose medium (YPD) plates at 30 deg C under normal atmospheric conditions.
database_cross_reference: SGD:curators

large-scale survey
type: Class
subclass of: phenotype assays
definition: Generation and analysis of genome-wide sets of mutants that typically utilizes robotic methods.
has_alternative_id: YPO:0000114
has_obo_namespace: experiment_type
id: APO:0000114
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: large-scale survey
annotated property: definition
annotated target: Generation and analysis of genome-wide sets of mutants that typically utilizes robotic methods.
database_cross_reference: SGD:curators

other method
type: Class
definition: OBSOLETE. This term defined as 'novel techniques' has been obsoleted as it was a remnant of the original mutant types that has not been used.
has_alternative_id: YPO:0000115
has_obo_namespace: experiment_type
id: APO:0000115
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it was a remnant of the original mutant types that has never been used. We will replace this using either a classical genetics or large-scale survey experiment type.
deprecated: true

Axiom
annotated source: other method
annotated property: definition
annotated target: OBSOLETE. This term defined as 'novel techniques' has been obsoleted as it was a remnant of the original mutant types that has not been used.
database_cross_reference: SGD:curators

other mutant type
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
has_alternative_id: YPO:0000116
has_obo_namespace: mutant_type
id: APO:0000116
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it does not fit within the new descriptor terminology. In cases where a specific descriptor term cannot be identified use the term unspecified.
deprecated: true

Axiom
annotated source: other mutant type
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

normal
type: Class
subclass of: qualifier
definition: The observed phenotype shows no detectable difference between the mutant and the wild type.
has_alternative_id: YPO:0000117
has_obo_namespace: qualifier
has_related_synonym: wild type
id: APO:0000117
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: normal
annotated property: definition
annotated target: The observed phenotype shows no detectable difference between the mutant and the wild type.
database_cross_reference: SGD:RSN

Axiom
annotated source: normal
annotated property: has_related_synonym
annotated target: wild type
database_cross_reference: SGD:RSN

nuclear position
type: Class
subclass of: organelle distribution
definition: The location of the nucleus or nuclei within a cell or between separating cells.
has_alternative_id: YPO:0000118
has_obo_namespace: observable
id: APO:0000118
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nuclear position
annotated property: definition
annotated target: The location of the nucleus or nuclei within a cell or between separating cells.
database_cross_reference: SGD:mcc

size of nucleus
type: Class
subclass of: nuclear morphology
definition: The size of the nucleus.
has_alternative_id: YPO:0000119
has_obo_namespace: observable
id: APO:0000119
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: size of nucleus
annotated property: definition
annotated target: The size of the nucleus.
database_cross_reference: SGD:mcc

actin cytoskeleton morphology
type: Class
subclass of: cytoskeleton morphology
definition: The size, shape, or appearance of the actin cytoskeleton.
has_alternative_id: YPO:0000120
has_obo_namespace: observable
id: APO:0000120
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: actin cytoskeleton morphology
annotated property: definition
annotated target: The size, shape, or appearance of the actin cytoskeleton.
database_cross_reference: SGD:mcc

bud direction
type: Class
definition: OBSOLETE: This term was not defined before being obsoleted.
has_alternative_id: YPO:0000121
has_obo_namespace: observable
id: APO:0000121
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
deprecated: true

cell cycle arrest in M phase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000258
has_alternative_id: YPO:0000122
has_obo_namespace: observable
id: APO:0000122
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in M phase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

recovery from pheromone-induced cell cycle arrest
type: Class
subclass of: pheromone sensitivity
definition: Resumption of the cell cycle after the arrest that occurs in response to the presence of mating pheromones from cells of the opposite mating type.
has_alternative_id: YPO:0000123
has_obo_namespace: observable
id: APO:0000123
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: recovery from pheromone-induced cell cycle arrest
annotated property: definition
annotated target: Resumption of the cell cycle after the arrest that occurs in response to the presence of mating pheromones from cells of the opposite mating type.
database_cross_reference: SGD:mcc

pheromone-induced cell cycle arrest
type: Class
subclass of: pheromone sensitivity
definition: Arrest of the cell cycle that occurs in response to the presence of mating pheromones from cells of the opposite mating type.
has_alternative_id: YPO:0000124
has_obo_namespace: observable
id: APO:0000124
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: pheromone-induced cell cycle arrest
annotated property: definition
annotated target: Arrest of the cell cycle that occurs in response to the presence of mating pheromones from cells of the opposite mating type.
database_cross_reference: SGD:mcc

utilization of phosphorus source
type: Class
subclass of: nutrient utilization
definition: The ability to utilize the specified compound as a source of phosphorus.
has_alternative_id: YPO:0000125
has_obo_namespace: observable
id: APO:0000125
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: utilization of phosphorus source
annotated property: definition
annotated target: The ability to utilize the specified compound as a source of phosphorus.
database_cross_reference: SGD:curators

nuclear import
type: Class
subclass of: nuclear transport
definition: Transport of proteins or RNAs into or out of the nucleus.
has_alternative_id: YPO:0000126
has_obo_namespace: observable
id: APO:0000126
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nuclear import
annotated property: definition
annotated target: Transport of proteins or RNAs into or out of the nucleus.
database_cross_reference: SGD:mcc

nuclear export
type: Class
subclass of: nuclear transport
definition: Export of proteins or RNAs from the nucleus.
has_alternative_id: YPO:0000127
has_obo_namespace: observable
id: APO:0000127
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nuclear export
annotated property: definition
annotated target: Export of proteins or RNAs from the nucleus.
database_cross_reference: SGD:mcc

peroxisomal transport
type: Class
subclass of: protein transport
definition: Import of proteins into peroxisomes.
has_alternative_id: YPO:0000128
has_obo_namespace: observable
id: APO:0000128
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: peroxisomal transport
annotated property: definition
annotated target: Import of proteins into peroxisomes.
database_cross_reference: SGD:mcc

protein transport
type: Class
subclass of: intracellular transport
definition: Delivery of proteins to specific locations.
has_alternative_id: YPO:0000129
has_obo_namespace: observable
has_related_synonym: protein localization
has_related_synonym: protein targeting
id: APO:0000129
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: protein transport
annotated property: definition
annotated target: Delivery of proteins to specific locations.
database_cross_reference: SGD:RSN

Axiom
annotated source: protein transport
annotated property: has_related_synonym
annotated target: protein localization
database_cross_reference: SGD:RSN

Axiom
annotated source: protein transport
annotated property: has_related_synonym
annotated target: protein targeting
database_cross_reference: SGD:RSN

small molecule transport
type: Class
subclass of: intracellular transport
definition: Transport of small molecules into, out of, or within the cell.
has_alternative_id: YPO:0000130
has_obo_namespace: observable
id: APO:0000130
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: small molecule transport
annotated property: definition
annotated target: Transport of small molecules into, out of, or within the cell.
database_cross_reference: SGD:mcc

protein/peptide modification
type: Class
subclass of: metabolism and growth
definition: The covalent modification of a specified protein.
has_alternative_id: YPO:0000131
has_obo_namespace: observable
id: APO:0000131
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: protein/peptide modification
annotated property: definition
annotated target: The covalent modification of a specified protein.
database_cross_reference: SGD:curators

RNA localization
type: Class
subclass of: intracellular transport
definition: Localization of specific RNAs within the cell.
has_alternative_id: YPO:0000132
has_obo_namespace: observable
id: APO:0000132
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: RNA localization
annotated property: definition
annotated target: Localization of specific RNAs within the cell.
database_cross_reference: SGD:mcc

cell cycle arrest in metaphase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000264
has_alternative_id: YPO:0000133
has_obo_namespace: observable
id: APO:0000133
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in metaphase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest at the metaphase - anaphase transition
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000259
has_alternative_id: YPO:0000134
has_obo_namespace: observable
id: APO:0000134
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest at the metaphase - anaphase transition
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest in anaphase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000260
has_alternative_id: YPO:0000135
has_obo_namespace: observable
id: APO:0000135
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in anaphase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest in early anaphase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000261
has_alternative_id: YPO:0000136
has_obo_namespace: observable
id: APO:0000136
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in early anaphase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest in mid anaphase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000262
has_alternative_id: YPO:0000137
has_obo_namespace: observable
id: APO:0000137
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in mid anaphase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: RSN:SGD

cell cycle arrest in late anaphase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000263
has_alternative_id: YPO:0000138
has_obo_namespace: observable
id: APO:0000138
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in late anaphase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest in telophase
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000265
has_alternative_id: YPO:0000139
has_obo_namespace: observable
id: APO:0000139
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in telophase
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

cell cycle arrest in G0 (stationary phase)
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
consider: APO:0000250
consider: APO:0000267
consider: APO:0000268
has_alternative_id: YPO:0000140
has_obo_namespace: observable
id: APO:0000140
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in G0 (stationary phase)
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

critical cell size at START (G1 cell-size checkpoint)
type: Class
subclass of: cell size
definition: The cell volume (or size) which must be attained before cells can pass through START, a checkpoint which operates in G1, and commit to a full round of cell division.
has_alternative_id: YPO:0000141
has_obo_namespace: observable
id: APO:0000141
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: critical cell size at START (G1 cell-size checkpoint)
annotated property: definition
annotated target: The cell volume (or size) which must be attained before cells can pass through START, a checkpoint which operates in G1, and commit to a full round of cell division.
database_cross_reference: SGD:RSN

critical cell size at G2/M (cryptic G2/M cell size checkpoint)
type: Class
subclass of: cell size
definition: The cell volume (or size) which must be attained before cells can pass from G2 into M phase and commit to the completion of mitosis. This normally cryptic checkpoint negatively regulates passage from G2 into M phase.
has_alternative_id: YPO:0000142
has_obo_namespace: observable
id: APO:0000142
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: critical cell size at G2/M (cryptic G2/M cell size checkpoint)
annotated property: definition
annotated target: The cell volume (or size) which must be attained before cells can pass from G2 into M phase and commit to the completion of mitosis. This normally cryptic checkpoint negatively regulates passage from G2 into M phase.
database_cross_reference: SGD:RSN

chromosome/plasmid maintenance
type: Class
subclass of: cellular processes
definition: The stable maintenance of chromosomes or plasmids.
has_alternative_id: YPO:0000143
has_obo_namespace: observable
id: APO:0000143
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: chromosome/plasmid maintenance
annotated property: definition
annotated target: The stable maintenance of chromosomes or plasmids.
database_cross_reference: SGD:mcc

telomere length
type: Class
subclass of: chromosome/plasmid maintenance
definition: The average length of telomeres.
has_alternative_id: YPO:0000144
has_obo_namespace: observable
id: APO:0000144
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: telomere length
annotated property: definition
annotated target: The average length of telomeres.
database_cross_reference: SGD:curators

oxidative phosphorylation
type: Class
subclass of: respiratory metabolism
definition: The oxidation of nutrients to generate ATP, performed by enzymes of the mitochondrial inner membrane.
has_alternative_id: YPO:0000145
has_obo_namespace: observable
has_related_synonym: respiration
id: APO:0000145
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: oxidative phosphorylation
annotated property: definition
annotated target: The oxidation of nutrients to generate ATP, performed by enzymes of the mitochondrial inner membrane.
database_cross_reference: SGD:mcc

Axiom
annotated source: oxidative phosphorylation
annotated property: has_related_synonym
annotated target: respiration
database_cross_reference: SGD:RSN

systematic repressible mutation set
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
term replaced by: APO:0000012
term replaced by: APO:0000235
has_alternative_id: YPO:0000146
has_obo_namespace: experiment_type
id: APO:0000146
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD
comment: This term was made obsolete as it is a compound term containing information on both the scope of the experiment as well as the repressible nature of the mutant_type.
deprecated: true

Axiom
annotated source: systematic repressible mutation set
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

heat sensitivity
type: Class
subclass of: temperature sensitive growth
definition: Sensitivity to temperatures that are higher than optimal growth temperature.
has_alternative_id: YPO:0000147
has_obo_namespace: observable
has_related_synonym: temperature sensitivity
id: APO:0000147
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: heat sensitivity
annotated property: definition
annotated target: Sensitivity to temperatures that are higher than optimal growth temperature.
database_cross_reference: SGD:mcc

Axiom
annotated source: heat sensitivity
annotated property: has_related_synonym
annotated target: temperature sensitivity
database_cross_reference: SGD:RSN

cold sensitivity
type: Class
subclass of: temperature sensitive growth
definition: Sensitivity to temperatures that are lower than optimal growth temperature.
has_alternative_id: YPO:0000148
has_obo_namespace: observable
id: APO:0000148
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cold sensitivity
annotated property: definition
annotated target: Sensitivity to temperatures that are lower than optimal growth temperature.
database_cross_reference: SGD:mcc

protein/peptide accumulation
type: Class
subclass of: metabolism and growth
definition: Abundance of a specified peptide/protein; production to a certain level.
has_alternative_id: YPO:0000149
has_obo_namespace: observable
has_related_synonym: protein/peptide abundance
id: APO:0000149
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: protein/peptide accumulation
annotated property: definition
annotated target: Abundance of a specified peptide/protein; production to a certain level.
database_cross_reference: SGD:RSN

Axiom
annotated source: protein/peptide accumulation
annotated property: has_related_synonym
annotated target: protein/peptide abundance
database_cross_reference: SGD:RSN

null homozygous diploid
type: Class
definition: OBSOLETE. Mutation abolishes function of both alleles of the gene in a diploid strain.
term replaced by: APO:0000011
has_alternative_id: YPO:0000150
has_obo_namespace: mutant_type
id: APO:0000150
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it is a compound term, with plody related information captured through the experiment_type and null captured as a mutant_type.
deprecated: true

Axiom
annotated source: null homozygous diploid
annotated property: definition
annotated target: OBSOLETE. Mutation abolishes function of both alleles of the gene in a diploid strain.
database_cross_reference: SGD:RSN

null heterozygous diploid
type: Class
definition: OBSOLETE. Mutation abolishes function of one allele of the gene in a diploid strain.
term replaced by: APO:0000011
has_alternative_id: YPO:0000151
has_obo_namespace: mutant_type
id: APO:0000151
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it is a compound term, with plody related information captured through the experiment_type and null captured as a mutant_type.
deprecated: true

Axiom
annotated source: null heterozygous diploid
annotated property: definition
annotated target: OBSOLETE. Mutation abolishes function of one allele of the gene in a diploid strain.
database_cross_reference: SGD:RSN

haploinsufficient
type: Class
subclass of: fitness
definition: The heterozygous diploid displays a decreased growth rate relative to a diploid that is homozygous wild type at that locus.
has_alternative_id: YPO:0000152
has_obo_namespace: observable
id: APO:0000152
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: haploinsufficient
annotated property: definition
annotated target: The heterozygous diploid displays a decreased growth rate relative to a diploid that is homozygous wild type at that locus.
database_cross_reference: SGD:curators

petite
type: Class
subclass of: respiratory metabolism
definition: The formation of smaller than wild-type colonies on fermentable carbon sources (e.g., glucose), due to a respiratory defect. The respiratory defect could result from mutation or loss of the mitochondrial genome, or from a nuclear mutation affecting respiration. The fermentation of glucose produces ethanol, which is metabolized by the respiratory pathway in wild-type cells and contributes to colony size; respiratory-deficient mutants are unable to utilize this ethanol.
has_alternative_id: YPO:0000153
has_obo_namespace: observable
id: APO:0000153
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: petite
annotated property: definition
annotated target: The formation of smaller than wild-type colonies on fermentable carbon sources (e.g., glucose), due to a respiratory defect. The respiratory defect could result from mutation or loss of the mitochondrial genome, or from a nuclear mutation affecting respiration. The fermentation of glucose produces ethanol, which is metabolized by the respiratory pathway in wild-type cells and contributes to colony size; respiratory-deficient mutants are unable to utilize this ethanol.
database_cross_reference: PMID:9301019
database_cross_reference: SGD:mcc

petite-negative
type: Class
subclass of: respiratory metabolism
definition: The petite-negative phenotype arises from mutation in a nuclear gene that is not essential in an otherwise wild-type strain with an intact mitochondrial genome, but becomes essential in strains lacking the mitochondrial genome, referred to as rho- or rho0. Petite-negative strains cannot grow on fermentable carbon sources (e.g., glucose) in the absence of an intact mitochondrial genome. This phenotype is often assayed as the inability grow in the presence of ethidium bromide, which causes the loss of the mitochondrial genome.
has_alternative_id: YPO:0000154
has_obo_namespace: observable
id: APO:0000154
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: petite-negative
annotated property: definition
annotated target: The petite-negative phenotype arises from mutation in a nuclear gene that is not essential in an otherwise wild-type strain with an intact mitochondrial genome, but becomes essential in strains lacking the mitochondrial genome, referred to as rho- or rho0. Petite-negative strains cannot grow on fermentable carbon sources (e.g., glucose) in the absence of an intact mitochondrial genome. This phenotype is often assayed as the inability grow in the presence of ethidium bromide, which causes the loss of the mitochondrial genome.
database_cross_reference: PMID:16267274
database_cross_reference: SGD:mcc

apoptosis
type: Class
subclass of: cell death
definition: An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process.
has_alternative_id: YPO:0000155
has_obo_namespace: observable
id: APO:0000155
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: apoptosis
annotated property: definition
annotated target: An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process.
database_cross_reference: PMID:15556039
database_cross_reference: PMID:18452540
database_cross_reference: PMID:18500447
database_cross_reference: PMID:18782613
database_cross_reference: PMID:19416362
database_cross_reference: SGD:mcc

fermentative growth rate
type: Class
definition: OBSOLETE: The rate of growth in the presence of a fermentable carbon source.
consider: APO:0000308
has_alternative_id: YPO:0000156
has_obo_namespace: observable
id: APO:0000156
in_subset: AspGD
in_subset: SGD
deprecated: true

Axiom
annotated source: fermentative growth rate
annotated property: definition
annotated target: OBSOLETE: The rate of growth in the presence of a fermentable carbon source.
database_cross_reference: SGD:curators

utilization of iron source
type: Class
subclass of: nutrient utilization
definition: The ability to utilize the specified compound as a source of iron.
has_alternative_id: YPO:0000157
has_obo_namespace: observable
id: APO:0000157
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: utilization of iron source
annotated property: definition
annotated target: The ability to utilize the specified compound as a source of iron.
database_cross_reference: SGD:curators

culture appearance
type: Class
subclass of: morphology
definition: The appearance of a population of cells.
has_alternative_id: YPO:0000158
has_obo_namespace: observable
id: APO:0000158
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: culture appearance
annotated property: definition
annotated target: The appearance of a population of cells.
database_cross_reference: SGD:mcc

biofilm formation
type: Class
subclass of: culture appearance
definition: The ability to form a layer on solid surfaces with or without other microorganisms.
has_alternative_id: YPO:0000159
has_obo_namespace: observable
id: APO:0000159
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: biofilm formation
annotated property: definition
annotated target: The ability to form a layer on solid surfaces with or without other microorganisms.
database_cross_reference: SGD:curators

hyphal growth
type: Class
subclass of: filamentous growth
has_alternative_id: YPO:0000160
has_obo_namespace: observable
id: APO:0000160
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

multiple
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
has_alternative_id: YPO:0000161
has_obo_namespace: mutant_type
id: APO:0000161
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it was a remnant of the original mutant types that does not fit within the new descriptor choices.
deprecated: true

Axiom
annotated source: multiple
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

Affinity Capture-MS
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000162
has_obo_namespace: experiment_type
id: APO:0000162
in_subset: SGD

Affinity Capture-RNA
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000163
has_obo_namespace: experiment_type
id: APO:0000163
in_subset: SGD

interactions
type: Class
subclass of: experiment_type
has_alternative_id: YPO:0000164
has_obo_namespace: experiment_type
id: APO:0000164
in_subset: SGD

Affinity Capture-Western
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000165
has_obo_namespace: experiment_type
id: APO:0000165
in_subset: SGD

Biochemical Activity
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000166
has_obo_namespace: experiment_type
id: APO:0000166
in_subset: SGD

Co-crystal Structure
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000167
has_obo_namespace: experiment_type
id: APO:0000167
in_subset: SGD

Co-fractionation
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000168
has_obo_namespace: experiment_type
id: APO:0000168
in_subset: SGD

Co-localization
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000169
has_obo_namespace: experiment_type
id: APO:0000169
in_subset: SGD

Co-purification
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000170
has_obo_namespace: experiment_type
id: APO:0000170
in_subset: SGD

Dosage Growth Defect
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000171
has_obo_namespace: experiment_type
id: APO:0000171
in_subset: SGD

Dosage Lethality
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000172
has_obo_namespace: experiment_type
id: APO:0000172
in_subset: SGD

Dosage Rescue
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000173
has_obo_namespace: experiment_type
id: APO:0000173
in_subset: SGD

Epistatic MiniArray Profile
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000174
has_obo_namespace: experiment_type
id: APO:0000174
in_subset: SGD

FRET
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000175
has_obo_namespace: experiment_type
id: APO:0000175
in_subset: SGD

Far Western
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000176
has_obo_namespace: experiment_type
id: APO:0000176
in_subset: SGD

Phenotypic Enhancement
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000177
has_obo_namespace: experiment_type
id: APO:0000177
in_subset: SGD

Phenotypic Suppression
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000178
has_obo_namespace: experiment_type
id: APO:0000178
in_subset: SGD

Protein-RNA
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000179
has_obo_namespace: experiment_type
id: APO:0000179
in_subset: SGD

Protein-peptide
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000180
has_obo_namespace: experiment_type
id: APO:0000180
in_subset: SGD

Reconstituted Complex
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000181
has_obo_namespace: experiment_type
id: APO:0000181
in_subset: SGD

Synthetic Growth Defect
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000182
has_obo_namespace: experiment_type
id: APO:0000182
in_subset: SGD

Synthetic Lethality
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000183
has_obo_namespace: experiment_type
id: APO:0000183
in_subset: SGD

Synthetic Rescue
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000184
has_obo_namespace: experiment_type
id: APO:0000184
in_subset: SGD

Two-hybrid
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000185
has_obo_namespace: experiment_type
id: APO:0000185
in_subset: SGD

genetic interactions
type: Class
subclass of: interactions
has_alternative_id: YPO:0000186
has_obo_namespace: experiment_type
id: APO:0000186
in_subset: SGD

physical interactions
type: Class
subclass of: interactions
has_alternative_id: YPO:0000187
has_obo_namespace: experiment_type
id: APO:0000187
in_subset: SGD

Affinity Chromatography
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000188
has_obo_namespace: experiment_type
id: APO:0000188
in_subset: SGD

Affinity Precipitation
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000189
has_obo_namespace: experiment_type
id: APO:0000189
in_subset: SGD

Biochemical Assay
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000190
has_obo_namespace: experiment_type
id: APO:0000190
in_subset: SGD

Purified Complex
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000191
has_obo_namespace: experiment_type
id: APO:0000191
in_subset: SGD

phenotype assays
type: Class
subclass of: experiment_type
has_alternative_id: YPO:0000192
has_obo_namespace: experiment_type
id: APO:0000192
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

resistance to enzymatic treatment
type: Class
subclass of: stress resistance
definition: The level of resistance to treatment with enzymes.
has_alternative_id: YPO:0000193
has_obo_namespace: observable
id: APO:0000193
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: resistance to enzymatic treatment
annotated property: definition
annotated target: The level of resistance to treatment with enzymes.
database_cross_reference: SGD:curators

ionizing radiation resistance
type: Class
subclass of: radiation resistance
definition: The level of resistance to ionizing radiation.
has_alternative_id: YPO:0000194
has_exact_synonym: resistance to ionizing radiation
has_obo_namespace: observable
id: APO:0000194
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: ionizing radiation resistance
annotated property: definition
annotated target: The level of resistance to ionizing radiation.
database_cross_reference: SGD:mcc

gamma ray resistance
type: Class
subclass of: ionizing radiation resistance
definition: The level of resistance to gamma radiation.
has_alternative_id: YPO:0000195
has_exact_synonym: resistance to gamma rays
has_obo_namespace: observable
id: APO:0000195
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: gamma ray resistance
annotated property: definition
annotated target: The level of resistance to gamma radiation.
database_cross_reference: SGD:mcc

mating type switching
type: Class
subclass of: sexual cycle
definition: Conversion of a cell of one mating type to a different mating type.
has_alternative_id: YPO:0000196
has_obo_namespace: observable
id: APO:0000196
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mating type switching
annotated property: definition
annotated target: Conversion of a cell of one mating type to a different mating type.
database_cross_reference: SGD:mcc

colony sectoring
type: Class
subclass of: colony appearance
definition: Formation of wedge-shaped sectors, with a different color or appearance, in colonies of cells growing on a solid substrate.
has_alternative_id: YPO:0000197
has_obo_namespace: observable
id: APO:0000197
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: colony sectoring
annotated property: definition
annotated target: Formation of wedge-shaped sectors, with a different color or appearance, in colonies of cells growing on a solid substrate.
database_cross_reference: SGD:mcc

mutation frequency
type: Class
subclass of: chromosome/plasmid maintenance
definition: The frequency with which mutations occur.
has_alternative_id: YPO:0000198
has_obo_namespace: observable
id: APO:0000198
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mutation frequency
annotated property: definition
annotated target: The frequency with which mutations occur.
database_cross_reference: SGD:mcc

chitin deposition
type: Class
subclass of: cell wall morphology
definition: The pattern of chitin deposition in the cell wall.
has_alternative_id: YPO:0000199
has_obo_namespace: observable
id: APO:0000199
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: chitin deposition
annotated property: definition
annotated target: The pattern of chitin deposition in the cell wall.
database_cross_reference: SGD:mcc

budding pattern
type: Class
subclass of: budding
definition: The pattern with which buds emerge from a mother cell.
has_alternative_id: YPO:0000200
has_obo_namespace: observable
id: APO:0000200
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: budding pattern
annotated property: definition
annotated target: The pattern with which buds emerge from a mother cell.
database_cross_reference: SGD:mcc

acid pH resistance
type: Class
subclass of: resistance to chemicals
definition: The level of resistance to acidic pH.
has_alternative_id: YPO:0000201
has_exact_synonym: resistance to acid pH
has_obo_namespace: observable
id: APO:0000201
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: acid pH resistance
annotated property: definition
annotated target: The level of resistance to acidic pH.
database_cross_reference: SGD:mcc

alkaline pH resistance
type: Class
subclass of: resistance to chemicals
definition: The level of resistance to alkaline pH.
has_alternative_id: YPO:0000202
has_exact_synonym: resistance to alkaline pH
has_obo_namespace: observable
id: APO:0000202
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: alkaline pH resistance
annotated property: definition
annotated target: The level of resistance to alkaline pH.
database_cross_reference: SGD:mcc

hypoosmotic stress resistance
type: Class
subclass of: osmotic stress resistance
definition: The level of resistance to low osmolarity.
has_alternative_id: YPO:0000203
has_exact_synonym: resistance to hypoosmotic stress
has_obo_namespace: observable
id: APO:0000203
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: hypoosmotic stress resistance
annotated property: definition
annotated target: The level of resistance to low osmolarity.
database_cross_reference: SGD:mcc

hyperosmotic stress resistance
type: Class
subclass of: osmotic stress resistance
definition: The level of resistance to high osmolarity.
has_alternative_id: YPO:0000204
has_exact_synonym: resistance to hyperosmotic stress
has_obo_namespace: observable
id: APO:0000204
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: hyperosmotic stress resistance
annotated property: definition
annotated target: The level of resistance to high osmolarity.
database_cross_reference: SGD:mcc

ionic stress resistance
type: Class
subclass of: resistance to chemicals
definition: The level of resistance to ionic stress.
has_alternative_id: YPO:0000205
has_exact_synonym: resistance to ionic stress
has_obo_namespace: observable
id: APO:0000205
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: ionic stress resistance
annotated property: definition
annotated target: The level of resistance to ionic stress.
database_cross_reference: SGD:mcc

heterozygous diploid
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
has_alternative_id: YPO:0000206
has_obo_namespace: mutant_type
id: APO:0000206
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because all ploidy related terms will be integrated into experiment_type terms.
deprecated: true

Axiom
annotated source: heterozygous diploid
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

homozygous diploid
type: Class
definition: OBSOLETE. This term was not defined before being made obsolete.
has_alternative_id: YPO:0000207
has_obo_namespace: mutant_type
id: APO:0000207
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because all ploidy related terms will be integrated into experiment_type terms.
deprecated: true

Axiom
annotated source: homozygous diploid
annotated property: definition
annotated target: OBSOLETE. This term was not defined before being made obsolete.
database_cross_reference: SGD:RSN

chromosome segregation
type: Class
subclass of: chromosome/plasmid maintenance
definition: The physical separation of chromosomes and their distribution to two or more sets during mitosis or meiosis.
has_alternative_id: YPO:0000208
has_obo_namespace: observable
id: APO:0000208
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: chromosome segregation
annotated property: definition
annotated target: The physical separation of chromosomes and their distribution to two or more sets during mitosis or meiosis.
database_cross_reference: SGD:mcc

protein/peptide distribution
type: Class
subclass of: metabolism and growth
definition: The location(s) where the specified protein is found within the cell.
has_alternative_id: YPO:0000209
has_obo_namespace: observable
id: APO:0000209
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: protein/peptide distribution
annotated property: definition
annotated target: The location(s) where the specified protein is found within the cell.
database_cross_reference: SGD:mcc

anaerobic metabolism
type: Class
subclass of: metabolism and growth
definition: Metabolism during growth in the absence of oxygen.
has_alternative_id: YPO:0000210
has_obo_namespace: observable
id: APO:0000210
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: anaerobic metabolism
annotated property: definition
annotated target: Metabolism during growth in the absence of oxygen.
database_cross_reference: SGD:curators

anaerobic growth rate
type: Class
definition: OBSOLETE: The rate of growth in the absence of oxygen.
consider: APO:0000307
has_alternative_id: YPO:0000211
has_obo_namespace: observable
id: APO:0000211
in_subset: AspGD
in_subset: SGD
deprecated: true

Axiom
annotated source: anaerobic growth rate
annotated property: definition
annotated target: OBSOLETE: The rate of growth in the absence of oxygen.
database_cross_reference: SGD:curators

bud morphology
type: Class
subclass of: cellular morphology
definition: The size or shape of the bud.
has_alternative_id: YPO:0000212
has_obo_namespace: observable
id: APO:0000212
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: bud morphology
annotated property: definition
annotated target: The size or shape of the bud.
database_cross_reference: SGD:curators

spindle morphology
type: Class
subclass of: cytoskeleton morphology
definition: The size, shape, or appearance of the mitotic or meiotic spindle.
has_alternative_id: YPO:0000213
has_obo_namespace: observable
id: APO:0000213
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: spindle morphology
annotated property: definition
annotated target: The size, shape, or appearance of the mitotic or meiotic spindle.
database_cross_reference: SGD:mcc

position of spindle pole body
type: Class
subclass of: spindle morphology
definition: The position of the mitotic or meiotic spindle pole body.
has_alternative_id: YPO:0000214
has_obo_namespace: observable
id: APO:0000214
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: position of spindle pole body
annotated property: definition
annotated target: The position of the mitotic or meiotic spindle pole body.
database_cross_reference: SGD:mcc

toxin resistance
type: Class
subclass of: stress resistance
definition: The level of resistance to toxins, poisonous compounds that are produced by cells or organisms.
has_alternative_id: YPO:0000215
has_exact_synonym: resistance to toxin
has_obo_namespace: observable
id: APO:0000215
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: toxin resistance
annotated property: definition
annotated target: The level of resistance to toxins, poisonous compounds that are produced by cells or organisms.
database_cross_reference: SGD:mcc

fitness
type: Class
subclass of: observable
definition: The ability of an organism to reproduce and to produce viable progeny.
has_alternative_id: YPO:0000216
has_obo_namespace: observable
id: APO:0000216
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
comment: This is a top-level term that is not to be used for curation.

Axiom
annotated source: fitness
annotated property: definition
annotated target: The ability of an organism to reproduce and to produce viable progeny.
database_cross_reference: SGD:curators

essentiality
type: Class
subclass of: observable
definition: The essentiality of a gene for survival under standard conditions for growth of that organism.
has_alternative_id: YPO:0000217
has_obo_namespace: observable
id: APO:0000217
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
comment: This is a top-level term, not to be used for curation.

Axiom
annotated source: essentiality
annotated property: definition
annotated target: The essentiality of a gene for survival under standard conditions for growth of that organism.
database_cross_reference: SGD:curators

redox state
type: Class
subclass of: metabolism and growth
definition: The balance of oxidized and reduced molecules in the cell. Respiration and various environmental factors cause formation of reactive oxygen species which can oxidize and damage cellular components.
has_alternative_id: YPO:0000218
has_obo_namespace: observable
id: APO:0000218
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: redox state
annotated property: definition
annotated target: The balance of oxidized and reduced molecules in the cell. Respiration and various environmental factors cause formation of reactive oxygen species which can oxidize and damage cellular components.
database_cross_reference: SGD:mcc

utilization of sulfur source
type: Class
subclass of: nutrient utilization
definition: The ability to utilize the specified compound as a source of sulfur.
has_alternative_id: YPO:0000219
has_obo_namespace: observable
id: APO:0000219
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: utilization of sulfur source
annotated property: definition
annotated target: The ability to utilize the specified compound as a source of sulfur.
database_cross_reference: SGD:mcc

necrotic cell death
type: Class
subclass of: cell death
definition: A form of cell death that is distinct from apoptosis. Cells undergoing necrotic cell death undergo overall destruction. They can be distinguished from apoptotic cells because they lose membrane integrity, which only happens late in apoptosis (positive propidium iodide staining), and do not externalize phosphatidylserine (measured by annexin V staining) as do apoptotic cells.
has_alternative_id: YPO:0000220
has_obo_namespace: observable
id: APO:0000220
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: necrotic cell death
annotated property: definition
annotated target: A form of cell death that is distinct from apoptosis. Cells undergoing necrotic cell death undergo overall destruction. They can be distinguished from apoptotic cells because they lose membrane integrity, which only happens late in apoptosis (positive propidium iodide staining), and do not externalize phosphatidylserine (measured by annexin V staining) as do apoptotic cells.
database_cross_reference: PMID:11535781
database_cross_reference: PMID:18656474
database_cross_reference: PMID:18782613
database_cross_reference: SGD:mcc

septum formation
type: Class
subclass of: cell wall morphology
definition: Formation of a septum between dividing cells.
has_alternative_id: YPO:0000221
has_obo_namespace: observable
id: APO:0000221
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: septum formation
annotated property: definition
annotated target: Formation of a septum between dividing cells.
database_cross_reference: SGD:mcc

chemical compound excretion
type: Class
subclass of: metabolism and growth
definition: The excretion from the cell of a specified chemical compound.
has_alternative_id: YPO:0000222
has_obo_namespace: observable
id: APO:0000222
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: chemical compound excretion
annotated property: definition
annotated target: The excretion from the cell of a specified chemical compound.
database_cross_reference: SGD:mcc

mating projection morphology
type: Class
subclass of: cellular morphology
definition: The outward appearance or shape of the mating projection.
has_alternative_id: YPO:0000223
has_obo_namespace: observable
id: APO:0000223
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mating projection morphology
annotated property: definition
annotated target: The outward appearance or shape of the mating projection.
database_cross_reference: SGD:RSN

RNA accumulation
type: Class
subclass of: metabolism and growth
definition: Abundance of a specified RNA or class of RNAs.
has_alternative_id: YPO:0000224
has_obo_namespace: observable
id: APO:0000224
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: RNA accumulation
annotated property: definition
annotated target: Abundance of a specified RNA or class of RNAs.
database_cross_reference: SGD:RSN

mitotic recombination
type: Class
subclass of: mitotic cell cycle
subclass of: chromosome/plasmid maintenance
definition: Measures of the rate of recombination or total recombination observed during the mitotic cell cycle.
has_alternative_id: YPO:0000225
has_obo_namespace: observable
id: APO:0000225
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mitotic recombination
annotated property: definition
annotated target: Measures of the rate of recombination or total recombination observed during the mitotic cell cycle.
database_cross_reference: SGD:RSN

subcellular morphology
type: Class
subclass of: cellular morphology
definition: The size, shape, or appearance of subcellular organelles or structures.
has_alternative_id: YPO:0000226
has_obo_namespace: observable
id: APO:0000226
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: subcellular morphology
annotated property: definition
annotated target: The size, shape, or appearance of subcellular organelles or structures.
database_cross_reference: SGD:RSN

cell cycle arrest in S phase
type: Class
definition: OBSOLETE. Arrest of cells in the S phase of the cell cycle, the phase in which DNA replication occurs.
consider: APO:0000250
consider: APO:0000266
has_alternative_id: YPO:0000227
has_obo_namespace: observable
id: APO:0000227
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest in S phase
annotated property: definition
annotated target: OBSOLETE. Arrest of cells in the S phase of the cell cycle, the phase in which DNA replication occurs.
database_cross_reference: SGD:RSN

dominant negative
type: Class
subclass of: mutant_type
definition: The mutation results in a gene product that interferes with the function of the normal, wild-type gene product.
has_alternative_id: YPO:0000228
has_obo_namespace: mutant_type
id: APO:0000228
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: dominant negative
annotated property: definition
annotated target: The mutation results in a gene product that interferes with the function of the normal, wild-type gene product.
database_cross_reference: SGD:RSN

homozygous diploid
type: Class
subclass of: classical genetics
definition: Classical genetics experiments carried out in a diploid background, where both alleles of the gene being described are identical.
has_alternative_id: YPO:0000229
has_obo_namespace: experiment_type
id: APO:0000229
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: homozygous diploid
annotated property: definition
annotated target: Classical genetics experiments carried out in a diploid background, where both alleles of the gene being described are identical.
database_cross_reference: SGD:RSN

heterozygous diploid
type: Class
subclass of: classical genetics
definition: Classical genetics experiments carried out in a diploid background, where alleles of the gene being described are not identical.
has_alternative_id: YPO:0000230
has_obo_namespace: experiment_type
id: APO:0000230
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: heterozygous diploid
annotated property: definition
annotated target: Classical genetics experiments carried out in a diploid background, where alleles of the gene being described are not identical.
database_cross_reference: SGD:RSN

homozygous diploid, large-scale survey
type: Class
subclass of: large-scale survey
definition: Any large-scale survey where the experiments are carried out in a homozygous diploid background.
has_alternative_id: YPO:0000231
has_obo_namespace: experiment_type
id: APO:0000231
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: homozygous diploid, large-scale survey
annotated property: definition
annotated target: Any large-scale survey where the experiments are carried out in a homozygous diploid background.
database_cross_reference: SGD:RSN

heterozygous diploid, large-scale survey
type: Class
subclass of: large-scale survey
definition: Any large-scale survey where the experiments carried our are in a heterozygous diploid background.
has_alternative_id: YPO:0000232
has_obo_namespace: experiment_type
id: APO:0000232
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: heterozygous diploid, large-scale survey
annotated property: definition
annotated target: Any large-scale survey where the experiments carried our are in a heterozygous diploid background.
database_cross_reference: SGD:RSN

homozygous diploid, competitive growth
type: Class
subclass of: competitive growth
definition: Any competitive growth experiment carried out in a homozygous diploid background.
has_alternative_id: YPO:0000233
has_obo_namespace: experiment_type
id: APO:0000233
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: homozygous diploid, competitive growth
annotated property: definition
annotated target: Any competitive growth experiment carried out in a homozygous diploid background.
database_cross_reference: SGD:RSN

heterozygous diploid, competitive growth
type: Class
subclass of: competitive growth
definition: Any competitive growth experiment carried out in a heterozygous diploid background.
has_alternative_id: YPO:0000234
has_obo_namespace: experiment_type
id: APO:0000234
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: heterozygous diploid, competitive growth
annotated property: definition
annotated target: Any competitive growth experiment carried out in a heterozygous diploid background.
database_cross_reference: SGD:RSN

systematic mutation set
type: Class
subclass of: large-scale survey
definition: Robotic generation and analysis of large-scale, genome-wide haploid knockout sets.
has_alternative_id: YPO:0000235
has_obo_namespace: experiment_type
id: APO:0000235
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: systematic mutation set
annotated property: definition
annotated target: Robotic generation and analysis of large-scale, genome-wide haploid knockout sets.
database_cross_reference: SGD:RSN

homozygous diploid, systematic mutation set
type: Class
subclass of: systematic mutation set
definition: Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in a homozygous diploid background.
has_alternative_id: YPO:0000236
has_obo_namespace: experiment_type
id: APO:0000236
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: homozygous diploid, systematic mutation set
annotated property: definition
annotated target: Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in a homozygous diploid background.
database_cross_reference: SGD:RSN

heterozygous diploid, systematic mutation set
type: Class
subclass of: systematic mutation set
definition: Robotic generation and analysis of large-scale, genome-wide mutation sets carried out in a heterozygous diploid.
has_alternative_id: YPO:0000237
has_obo_namespace: experiment_type
id: APO:0000237
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: heterozygous diploid, systematic mutation set
annotated property: definition
annotated target: Robotic generation and analysis of large-scale, genome-wide mutation sets carried out in a heterozygous diploid.
database_cross_reference: SGD:RSN

cell cycle arrest at the G2/M phase transition
type: Class
definition: OBSOLETE. Arrest of cells at the transition between the G2 and M phases of the mitotic cell cycle.
consider: APO:0000250
consider: APO:0000257
has_alternative_id: YPO:0000238
has_obo_namespace: observable
id: APO:0000238
in_subset: AspGD
in_subset: SGD
comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier.
deprecated: true

Axiom
annotated source: cell cycle arrest at the G2/M phase transition
annotated property: definition
annotated target: OBSOLETE. Arrest of cells at the transition between the G2 and M phases of the mitotic cell cycle.
database_cross_reference: SGD:RSN

pexophagy
type: Class
subclass of: autophagy
definition: A form of autophagy selective for peroxisomes that occurs in response to starvation, damage or as a homeostatic mechanism to regulate the levels of this organelle. Pexophagy can be further subdivided into micropexophagy, the engulfment of a cluster of peroxisomes at the vacuole surface and macropexophagy, the sequestration of individual peroxisomes by a double-membrane vesicle, followed by fusion with the vacuole.
has_alternative_id: YPO:0000239
has_obo_namespace: observable
id: APO:0000239
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: pexophagy
annotated property: definition
annotated target: A form of autophagy selective for peroxisomes that occurs in response to starvation, damage or as a homeostatic mechanism to regulate the levels of this organelle. Pexophagy can be further subdivided into micropexophagy, the engulfment of a cluster of peroxisomes at the vacuole surface and macropexophagy, the sequestration of individual peroxisomes by a double-membrane vesicle, followed by fusion with the vacuole.
database_cross_reference: SGD:RSN

mitophagy
type: Class
subclass of: autophagy
definition: A form of autophagy selective for mitochondria that occurs in response to starvation, damage or during a shift in environmental conditions. The process can be further subdivided into micromitophagy, the engulfment of a cluster of mitochondria at the vacuole surface, and macromitophagy, the sequestration of individual mitochondria by a double-membrane vesicle, followed by fusion with the vacuole.
has_alternative_id: YPO:0000240
has_obo_namespace: observable
id: APO:0000240
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mitophagy
annotated property: definition
annotated target: A form of autophagy selective for mitochondria that occurs in response to starvation, damage or during a shift in environmental conditions. The process can be further subdivided into micromitophagy, the engulfment of a cluster of mitochondria at the vacuole surface, and macromitophagy, the sequestration of individual mitochondria by a double-membrane vesicle, followed by fusion with the vacuole.
database_cross_reference: SGD:RSN

freeze-thaw resistance
type: Class
subclass of: stress resistance
definition: The level of resistance to one or more cycles of freezing and thawing.
has_alternative_id: YPO:0000241
has_exact_synonym: resistance to freeze-thaw treatment
has_obo_namespace: observable
id: APO:0000241
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: freeze-thaw resistance
annotated property: definition
annotated target: The level of resistance to one or more cycles of freezing and thawing.
database_cross_reference: SGD:RSN

lipid particle morphology
type: Class
subclass of: subcellular morphology
definition: The size, shape, or appearance of lipid particles or droplets, subcellular structures consisting of a hydrophobic core of neutral lipids (triacylglycerol and steryl esters), surrounded by a phospholipid monolayer with a small quantity of embedded proteins including enzymes involved in lipid biosynthesis. Lipid particles function as a storage compartment for lipid components.
has_alternative_id: YPO:0000242
has_exact_synonym: lipid body
has_exact_synonym: lipid droplet
has_obo_namespace: observable
id: APO:0000242
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: lipid particle morphology
annotated property: definition
annotated target: The size, shape, or appearance of lipid particles or droplets, subcellular structures consisting of a hydrophobic core of neutral lipids (triacylglycerol and steryl esters), surrounded by a phospholipid monolayer with a small quantity of embedded proteins including enzymes involved in lipid biosynthesis. Lipid particles function as a storage compartment for lipid components.
database_cross_reference: SGD:RSN

Axiom
annotated source: lipid particle morphology
annotated property: has_exact_synonym
annotated target: lipid body
database_cross_reference: SGD:RSN

Axiom
annotated source: lipid particle morphology
annotated property: has_exact_synonym
annotated target: lipid droplet
database_cross_reference: SGD:RSN

Golgi morphology
type: Class
subclass of: endomembrane system morphology
definition: The size, shape or appearance of the Golgi apparatus or its parts.
has_alternative_id: YPO:0000243
has_obo_namespace: observable
id: APO:0000243
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: Golgi morphology
annotated property: definition
annotated target: The size, shape or appearance of the Golgi apparatus or its parts.
database_cross_reference: SGD:RSN

PCA
type: Class
subclass of: physical interactions
has_alternative_id: YPO:0000244
database_cross_reference: BioGRID:curators
has_obo_namespace: experiment_type
id: APO:0000244
in_subset: SGD

decreased rate
type: Class
subclass of: abnormal
definition: Observed feature is decreased with respect to time compared to that in the wild type (slower).
has_alternative_id: curators
has_exact_synonym: slower
has_obo_namespace: qualifier
id: APO:0000245
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: decreased rate
annotated property: definition
annotated target: Observed feature is decreased with respect to time compared to that in the wild type (slower).
database_cross_reference: SGD:RSN

Axiom
annotated source: decreased rate
annotated property: has_exact_synonym
annotated target: slower
database_cross_reference: SGD:RSN

increased rate
type: Class
subclass of: abnormal
definition: Observed feature is increased with respect to time compared to that in the wild type (faster, accelerated).
has_alternative_id: YPO:0000246
has_exact_synonym: faster
has_obo_namespace: qualifier
has_related_synonym: accelerated
id: APO:0000246
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: increased rate
annotated property: definition
annotated target: Observed feature is increased with respect to time compared to that in the wild type (faster, accelerated).
database_cross_reference: SGD:RSN

Axiom
annotated source: increased rate
annotated property: has_exact_synonym
annotated target: faster
database_cross_reference: SGD:RSN

Axiom
annotated source: increased rate
annotated property: has_related_synonym
annotated target: accelerated
database_cross_reference: SGD:RSN

decreased duration
type: Class
subclass of: abnormal
definition: Observed feature occurs over a decreased period of time relative to wild type.
has_alternative_id: YPO:0000247
has_exact_synonym: decreased length
has_obo_namespace: qualifier
id: APO:0000247
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: decreased duration
annotated property: definition
annotated target: Observed feature occurs over a decreased period of time relative to wild type.
database_cross_reference: SGD:RSN

Axiom
annotated source: decreased duration
annotated property: has_exact_synonym
annotated target: decreased length
database_cross_reference: SGD:RSN

increased duration
type: Class
subclass of: abnormal
definition: Observed feature occurs over an increased period of time relative to wild type.
has_alternative_id: YPO:0000248
has_exact_synonym: increased length
has_obo_namespace: qualifier
id: APO:0000248
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: increased duration
annotated property: definition
annotated target: Observed feature occurs over an increased period of time relative to wild type.
database_cross_reference: SGD:RSN

Axiom
annotated source: increased duration
annotated property: has_exact_synonym
annotated target: increased length
database_cross_reference: SGD:RSN

delayed
type: Class
subclass of: abnormal
definition: Observed feature occurs after being postponed for a period of time relative to wild type.
has_alternative_id: YPO:0000249
has_exact_synonym: postponed
has_obo_namespace: qualifier
id: APO:0000249
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: delayed
annotated property: definition
annotated target: Observed feature occurs after being postponed for a period of time relative to wild type.
database_cross_reference: SGD:RSN

Axiom
annotated source: delayed
annotated property: has_exact_synonym
annotated target: postponed
database_cross_reference: SGD:RSN

arrested
type: Class
subclass of: abnormal
definition: Observed feature does not occur in a given time period relative to wild type.
has_alternative_id: YPO:0000250
has_obo_namespace: qualifier
id: APO:0000250
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: arrested
annotated property: definition
annotated target: Observed feature does not occur in a given time period relative to wild type.
database_cross_reference: SGD:RSN

premature
type: Class
subclass of: abnormal
definition: Observed feature occurs too soon, existing before the proper or usual time compared to wild type.
has_alternative_id: YPO:0000251
has_obo_namespace: qualifier
id: APO:0000251
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: premature
annotated property: definition
annotated target: Observed feature occurs too soon, existing before the proper or usual time compared to wild type.
database_cross_reference: SGD:RSN

normal rate
type: Class
subclass of: normal
definition: Observed feature occurs at the same time relative to wild type.
has_alternative_id: YPO:0000252
has_obo_namespace: qualifier
id: APO:0000252
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: normal rate
annotated property: definition
annotated target: Observed feature occurs at the same time relative to wild type.
database_cross_reference: SGD:RSN

cell cycle progression
type: Class
subclass of: mitotic cell cycle
definition: Progression of cells through the mitotic cell cycle.
has_alternative_id: YPO:0000253
has_obo_namespace: observable
id: APO:0000253
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression
annotated property: definition
annotated target: Progression of cells through the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in G2 phase
type: Class
subclass of: cell cycle progression
definition: Progression of cells through the G2 phase or second gap phase of the mitotic cell cycle, the interval between the completion of DNA synthesis and the beginning of mitosis.
has_alternative_id: YPO:0000254
has_obo_namespace: observable
id: APO:0000254
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in G2 phase
annotated property: definition
annotated target: Progression of cells through the G2 phase or second gap phase of the mitotic cell cycle, the interval between the completion of DNA synthesis and the beginning of mitosis.
database_cross_reference: SGD:RSN

cell cycle progression in G1 phase
type: Class
subclass of: cell cycle progression
definition: Progression of cells through the G1 or first gap phase of the mitotic cell cycle, the interval between the completion of mitosis and the beginning of DNA synthesis.
has_alternative_id: YPO:0000255
has_obo_namespace: observable
id: APO:0000255
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in G1 phase
annotated property: definition
annotated target: Progression of cells through the G1 or first gap phase of the mitotic cell cycle, the interval between the completion of mitosis and the beginning of DNA synthesis.
database_cross_reference: SGD:RSN

cell cycle passage through START
type: Class
subclass of: cell cycle progression in G1 phase
definition: Passage of cells through cell cycle control point or checkpoint located late in the G1 phase of the mitotic cell cycle just prior to S phase entry; passage through START results in commits cells to progression through the entire cell cycle.
has_alternative_id: YPO:0000256
has_exact_synonym: G1 checkpoint
has_obo_namespace: observable
id: APO:0000256
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle passage through START
annotated property: definition
annotated target: Passage of cells through cell cycle control point or checkpoint located late in the G1 phase of the mitotic cell cycle just prior to S phase entry; passage through START results in commits cells to progression through the entire cell cycle.
database_cross_reference: SGD:RSN

Axiom
annotated source: cell cycle passage through START
annotated property: has_exact_synonym
annotated target: G1 checkpoint
database_cross_reference: SGD:RSN

cell cycle progression through the G2/M phase transition
type: Class
subclass of: cell cycle progression
definition: Progression of cells from G2 phase to M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000257
has_obo_namespace: observable
id: APO:0000257
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression through the G2/M phase transition
annotated property: definition
annotated target: Progression of cells from G2 phase to M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in M phase
type: Class
subclass of: cell cycle progression
definition: Progression of cells through the M phase of the mitotic cell cycle, the phase in which mitosis occurs.
has_alternative_id: YPO:0000258
has_obo_namespace: observable
id: APO:0000258
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in M phase
annotated property: definition
annotated target: Progression of cells through the M phase of the mitotic cell cycle, the phase in which mitosis occurs.
database_cross_reference: SGD:RSN

cell cycle passage through the metaphase-anaphase transition
type: Class
subclass of: cell cycle progression in M phase
definition: Progression of cells from metaphase to anaphase during M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000259
has_obo_namespace: observable
id: APO:0000259
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle passage through the metaphase-anaphase transition
annotated property: definition
annotated target: Progression of cells from metaphase to anaphase during M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in anaphase
type: Class
subclass of: cell cycle progression in M phase
definition: Progression of cells through anaphase during M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000260
has_obo_namespace: observable
id: APO:0000260
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in anaphase
annotated property: definition
annotated target: Progression of cells through anaphase during M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in early anaphase
type: Class
subclass of: cell cycle progression in anaphase
definition: Progression of cells through early anaphase during M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000261
has_obo_namespace: observable
id: APO:0000261
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in early anaphase
annotated property: definition
annotated target: Progression of cells through early anaphase during M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in mid anaphase
type: Class
subclass of: cell cycle progression in anaphase
definition: Progression of cells through mid anaphase during M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000262
has_obo_namespace: observable
id: APO:0000262
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in mid anaphase
annotated property: definition
annotated target: Progression of cells through mid anaphase during M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in late anaphase
type: Class
subclass of: cell cycle progression in anaphase
definition: Progression of cells through late anaphase during M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000263
has_obo_namespace: observable
id: APO:0000263
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in late anaphase
annotated property: definition
annotated target: Progression of cells through late anaphase during M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in metaphase
type: Class
subclass of: cell cycle progression in M phase
definition: Progression of cells through metaphase during M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000264
has_obo_namespace: observable
id: APO:0000264
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in metaphase
annotated property: definition
annotated target: Progression of cells through metaphase during M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in telophase
type: Class
subclass of: cell cycle progression in M phase
definition: Progression of cells through telophase, the last of the stages of mitosis during M phase of the mitotic cell cycle.
has_alternative_id: YPO:0000265
has_obo_namespace: observable
id: APO:0000265
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in telophase
annotated property: definition
annotated target: Progression of cells through telophase, the last of the stages of mitosis during M phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression in S phase
type: Class
subclass of: cell cycle progression
definition: Progression of cells through S phase, the part of the mitotic cell cycle where DNA synthesis occurs.
has_alternative_id: YPO:0000266
has_obo_namespace: observable
id: APO:0000266
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression in S phase
annotated property: definition
annotated target: Progression of cells through S phase, the part of the mitotic cell cycle where DNA synthesis occurs.
database_cross_reference: SGD:RSN

entry into G0 (stationary phase)
type: Class
subclass of: mitotic cell cycle
definition: Entry of cells into the G0 or stationary phase of the mitotic cell cycle, where they enter a quiescent state.
has_alternative_id: YPO:0000267
has_obo_namespace: observable
id: APO:0000267
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: entry into G0 (stationary phase)
annotated property: definition
annotated target: Entry of cells into the G0 or stationary phase of the mitotic cell cycle, where they enter a quiescent state.
database_cross_reference: SGD:RSN

exit from G0 (stationary phase)
type: Class
subclass of: mitotic cell cycle
definition: Exit of cells from the G0 or stationary phase of the mitotic cell cycle, where they move from a quiescent state to one where growth and division resumes in the G1 phase of the mitotic cell cycle.
has_alternative_id: YPO:0000268
has_obo_namespace: observable
id: APO:0000268
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: exit from G0 (stationary phase)
annotated property: definition
annotated target: Exit of cells from the G0 or stationary phase of the mitotic cell cycle, where they move from a quiescent state to one where growth and division resumes in the G1 phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

cell cycle progression through the G1/S phase transition
type: Class
subclass of: cell cycle progression
definition: Progression of cells from G1 phase to S phase of the mitotic cell cycle.
has_alternative_id: YPO:0000269
has_obo_namespace: observable
id: APO:0000269
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: cell cycle progression through the G1/S phase transition
annotated property: definition
annotated target: Progression of cells from G1 phase to S phase of the mitotic cell cycle.
database_cross_reference: SGD:RSN

endoplasmic reticulum morphology
type: Class
subclass of: endomembrane system morphology
definition: The size, shape, or appearance of the endoplasmic reticulum (ER) or its parts.
has_alternative_id: YPO:0000270
has_obo_namespace: observable
id: APO:0000270
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: endoplasmic reticulum morphology
annotated property: definition
annotated target: The size, shape, or appearance of the endoplasmic reticulum (ER) or its parts.
database_cross_reference: SGD:RSN

RNA modification
type: Class
subclass of: metabolism and growth
definition: Covalent modification of a specified RNA; type of modification specified.
has_alternative_id: YPO:0000271
has_obo_namespace: observable
id: APO:0000271
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: RNA modification
annotated property: definition
annotated target: Covalent modification of a specified RNA; type of modification specified.
database_cross_reference: SGD:RSN

Synthetic Haploinsufficiency
type: Class
subclass of: genetic interactions
has_alternative_id: YPO:0000272
database_cross_reference: BioGRID:curators
has_obo_namespace: experiment_type
id: APO:0000272
in_subset: SGD

nucleolar morphology
type: Class
subclass of: nuclear morphology
definition: The size, shape, or appearance of the nucleolus or its parts.
has_alternative_id: curators
has_obo_namespace: observable
id: APO:0000273
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nucleolar morphology
annotated property: definition
annotated target: The size, shape, or appearance of the nucleolus or its parts.
database_cross_reference: SGD:RSN

prion state
type: Class
subclass of: cellular processes
definition: The presence or absence of prions.
has_alternative_id: YPO:0000274
has_obo_namespace: observable
id: APO:0000274
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: prion state
annotated property: definition
annotated target: The presence or absence of prions.
database_cross_reference: SGD:RSN

prion inheritance
type: Class
subclass of: prion state
definition: The transmission of prions from a mother cell to a daughter cell during budding.
has_alternative_id: YPO:0000275
has_obo_namespace: observable
id: APO:0000275
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: prion inheritance
annotated property: definition
annotated target: The transmission of prions from a mother cell to a daughter cell during budding.
database_cross_reference: SGD:RSN

prion formation
type: Class
subclass of: prion state
definition: The conversion from the state of being prion-free to the state of having prions.
has_alternative_id: YPO:0000276
has_exact_synonym: prion acquisition
has_obo_namespace: observable
id: APO:0000276
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: prion formation
annotated property: definition
annotated target: The conversion from the state of being prion-free to the state of having prions.
database_cross_reference: SGD:RSN

prion loss
type: Class
subclass of: prion state
definition: The conversion from the state of having prions to the state of being prion-free.
has_alternative_id: YPO:0000277
has_obo_namespace: observable
has_related_synonym: prion curing
id: APO:0000277
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: prion loss
annotated property: definition
annotated target: The conversion from the state of having prions to the state of being prion-free.
database_cross_reference: SGD:RSN

normal duration
type: Class
subclass of: normal
definition: Observed feature does not change with respect to time compared to that in the wild type.
has_alternative_id: YPO:0000278
has_obo_namespace: qualifier
id: APO:0000278
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: normal duration
annotated property: definition
annotated target: Observed feature does not change with respect to time compared to that in the wild type.
database_cross_reference: SGD:RSN

haploid, classical genetics
type: Class
subclass of: classical genetics
definition: Any classical genetics experiment carried out in a haploid background.
has_obo_namespace: experiment_type
id: APO:0000279
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: haploid, classical genetics
annotated property: definition
annotated target: Any classical genetics experiment carried out in a haploid background.
database_cross_reference: AspGD:mcc

haploid, competitive growth
type: Class
subclass of: competitive growth
definition: Any competitive growth experiment carried out in a haploid background.
has_obo_namespace: experiment_type
id: APO:0000280
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: haploid, competitive growth
annotated property: definition
annotated target: Any competitive growth experiment carried out in a haploid background.
database_cross_reference: AspGD:mcc

haploid, large-scale survey
type: Class
subclass of: large-scale survey
definition: Any large-scale survey experiment carried out in a haploid background.
has_obo_namespace: experiment_type
id: APO:0000281
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: haploid, large-scale survey
annotated property: definition
annotated target: Any large-scale survey experiment carried out in a haploid background.
database_cross_reference: AspGD:mcc

aneuploid, classical genetics
type: Class
subclass of: classical genetics
definition: Any classical genetics experiment carried out in an aneuploid background, where the strain carries more or fewer copies than normal of a large chromosomal region, or of one or more entire chromosomes.
has_obo_namespace: experiment_type
id: APO:0000282
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: aneuploid, classical genetics
annotated property: definition
annotated target: Any classical genetics experiment carried out in an aneuploid background, where the strain carries more or fewer copies than normal of a large chromosomal region, or of one or more entire chromosomes.
database_cross_reference: AspGD:mcc

aneuploid, large-scale survey
type: Class
subclass of: large-scale survey
definition: Any large-scale survey experiment carried out in an aneuploid background.
has_obo_namespace: experiment_type
id: APO:0000283
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: aneuploid, large-scale survey
annotated property: definition
annotated target: Any large-scale survey experiment carried out in an aneuploid background.
database_cross_reference: AspGD:mcc

aneuploid, competitive growth
type: Class
subclass of: competitive growth
definition: Any competitive growth experiment carried out in an aneuploid background.
has_obo_namespace: experiment_type
id: APO:0000284
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: aneuploid, competitive growth
annotated property: definition
annotated target: Any competitive growth experiment carried out in an aneuploid background.
database_cross_reference: AspGD:mcc

haploid, systematic mutation set
type: Class
subclass of: systematic mutation set
definition: Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in a haploid background.
has_obo_namespace: experiment_type
id: APO:0000285
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: haploid, systematic mutation set
annotated property: definition
annotated target: Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in a haploid background.
database_cross_reference: AspGD:mcc

aneuploid, systematic mutation set
type: Class
subclass of: systematic mutation set
definition: Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in an aneuploid background.
has_obo_namespace: experiment_type
id: APO:0000286
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: aneuploid, systematic mutation set
annotated property: definition
annotated target: Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in an aneuploid background.
database_cross_reference: AspGD:mcc

interaction with host/environment
type: Class
subclass of: observable
definition: Processes relating to interaction with the environment or with a host organism.
has_obo_namespace: observable
id: APO:0000287
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: interaction with host/environment
annotated property: definition
annotated target: Processes relating to interaction with the environment or with a host organism.
database_cross_reference: AspGD:mcc

adhesion
type: Class
subclass of: interaction with host/environment
definition: Adherence to a substrate in the environment or in a host.
has_obo_namespace: observable
id: APO:0000288
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: adhesion
annotated property: definition
annotated target: Adherence to a substrate in the environment or in a host.
database_cross_reference: AspGD:mcc

response to light
type: Class
subclass of: interaction with host/environment
definition: The response to visible light.
has_obo_namespace: observable
id: APO:0000289
in_subset: AspGD
in_subset: CryptoGD

Axiom
annotated source: response to light
annotated property: definition
annotated target: The response to visible light.
database_cross_reference: AspGD:mcc

allergy induction
type: Class
definition: OBSOLETE: The induction of an allergic response in the host organism.
has_obo_namespace: observable
id: APO:0000290
in_subset: AspGD
in_subset: CryptoGD
deprecated: true

Axiom
annotated source: allergy induction
annotated property: definition
annotated target: OBSOLETE: The induction of an allergic response in the host organism.
database_cross_reference: AspGD:mcc

formation of anatomical structure
type: Class
subclass of: development
definition: The development of a discrete anatomical structure.
has_obo_namespace: observable
id: APO:0000291
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: formation of anatomical structure
annotated property: definition
annotated target: The development of a discrete anatomical structure.
database_cross_reference: AspGD:mcc

secondary metabolite production
type: Class
subclass of: metabolism and growth
definition: The production of secondary metabolites, which are compounds that are not directly involved in normal growth, development or reproduction.
has_obo_namespace: observable
id: APO:0000292
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: secondary metabolite production
annotated property: definition
annotated target: The production of secondary metabolites, which are compounds that are not directly involved in normal growth, development or reproduction.
database_cross_reference: AspGD:mcc

utilization of zinc source
type: Class
subclass of: nutrient utilization
definition: The ability to utilize the specified compound as a source of zinc.
has_obo_namespace: observable
id: APO:0000293
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: utilization of zinc source
annotated property: definition
annotated target: The ability to utilize the specified compound as a source of zinc.
database_cross_reference: AspGD:mcc

utilization of magnesium source
type: Class
subclass of: nutrient utilization
definition: The ability to utilize the specified compound as a source of magnesium.
has_obo_namespace: observable
id: APO:0000294
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: utilization of magnesium source
annotated property: definition
annotated target: The ability to utilize the specified compound as a source of magnesium.
database_cross_reference: AspGD:mcc

conidiation
type: Class
subclass of: development
definition: The formation of conidia, which are asexual spores.
has_obo_namespace: observable
id: APO:0000295
in_subset: AspGD

Axiom
annotated source: conidiation
annotated property: definition
annotated target: The formation of conidia, which are asexual spores.
database_cross_reference: AspGD:mcc

organelle distribution
type: Class
subclass of: intracellular transport
definition: The localization and placement of a particular organelle.
has_obo_namespace: observable
id: APO:0000296
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: organelle distribution
annotated property: definition
annotated target: The localization and placement of a particular organelle.
database_cross_reference: SGD:mcc

mitochondrial distribution
type: Class
subclass of: organelle distribution
definition: The localization and placement of mitochondria within a cell or between separating cells.
has_obo_namespace: observable
id: APO:0000297
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: mitochondrial distribution
annotated property: definition
annotated target: The localization and placement of mitochondria within a cell or between separating cells.
database_cross_reference: SGD:mcc

peroxisomal distribution
type: Class
subclass of: organelle distribution
definition: The localization and placement of peroxisomes within a cell or between separating cells.
has_obo_namespace: observable
id: APO:0000298
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: peroxisomal distribution
annotated property: definition
annotated target: The localization and placement of peroxisomes within a cell or between separating cells.
database_cross_reference: SGD:mcc

vacuolar distribution
type: Class
subclass of: organelle distribution
definition: The localization and placement of vacuoles within a cell or between separating cells.
has_obo_namespace: observable
id: APO:0000299
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: vacuolar distribution
annotated property: definition
annotated target: The localization and placement of vacuoles within a cell or between separating cells.
database_cross_reference: SGD:mcc

endoplasmic reticulum distribution
type: Class
subclass of: organelle distribution
definition: The localization and placement of endoplasmic reticulum (ER) within a cell or between separating cells.
has_obo_namespace: observable
id: APO:0000300
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: endoplasmic reticulum distribution
annotated property: definition
annotated target: The localization and placement of endoplasmic reticulum (ER) within a cell or between separating cells.
database_cross_reference: SGD:mcc

Golgi distribution
type: Class
subclass of: organelle distribution
definition: The localization and placement of the Golgi apparatus within a cell or between separating cells.
has_obo_namespace: observable
id: APO:0000301
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: Golgi distribution
annotated property: definition
annotated target: The localization and placement of the Golgi apparatus within a cell or between separating cells.
database_cross_reference: SGD:mcc

vesicle distribution
type: Class
subclass of: organelle distribution
definition: The localization and placement of secretory, endocytic, or undefined vesicles within a cell or between separating cells.
has_obo_namespace: observable
id: APO:0000302
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: vesicle distribution
annotated property: definition
annotated target: The localization and placement of secretory, endocytic, or undefined vesicles within a cell or between separating cells.
database_cross_reference: SGD:mcc

endomembrane system morphology
type: Class
subclass of: subcellular morphology
definition: The size, shape, or appearance of components of the endomembrane system, which includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, peroxisomes, vacuoles, and endocytic and exocytic vesicles.
has_obo_namespace: observable
id: APO:0000303
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: endomembrane system morphology
annotated property: definition
annotated target: The size, shape, or appearance of components of the endomembrane system, which includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, peroxisomes, vacuoles, and endocytic and exocytic vesicles.
database_cross_reference: PMID:19121819
database_cross_reference: SGD:mcc

heterozygous diploid, classical genetics
type: Class
subclass of: classical genetics
definition: Any classical genetics experiment carried out in a heterozygous diploid background.
has_obo_namespace: experiment_type
id: APO:0000304
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: heterozygous diploid, classical genetics
annotated property: definition
annotated target: Any classical genetics experiment carried out in a heterozygous diploid background.
database_cross_reference: AspGD:mcc

homozygous diploid, classical genetics
type: Class
subclass of: classical genetics
definition: Any classical genetics experiment carried out in a homozygous diploid background.
has_obo_namespace: experiment_type
id: APO:0000305
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: homozygous diploid, classical genetics
annotated property: definition
annotated target: Any classical genetics experiment carried out in a homozygous diploid background.
database_cross_reference: AspGD:mcc

conidial germination
type: Class
subclass of: conidiation
definition: The production of viable cells arising from conidia, or asexual spores.
has_obo_namespace: observable
id: APO:0000306
in_subset: AspGD

Axiom
annotated source: conidial germination
annotated property: definition
annotated target: The production of viable cells arising from conidia, or asexual spores.
database_cross_reference: AspGD:mcc

anaerobic growth
type: Class
subclass of: anaerobic metabolism
definition: Growth in the absence of oxygen.
has_obo_namespace: observable
id: APO:0000307
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: anaerobic growth
annotated property: definition
annotated target: Growth in the absence of oxygen.
database_cross_reference: SGD:mcc

fermentative growth
type: Class
subclass of: fermentative metabolism
definition: Growth while utilizing a fermentable carbon source.
has_obo_namespace: observable
id: APO:0000308
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: fermentative growth
annotated property: definition
annotated target: Growth while utilizing a fermentable carbon source.
database_cross_reference: SGD:mcc

respiratory growth
type: Class
subclass of: respiratory metabolism
definition: Growth while utilizing a nonfermentable carbon source.
has_obo_namespace: observable
id: APO:0000309
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: respiratory growth
annotated property: definition
annotated target: Growth while utilizing a nonfermentable carbon source.
database_cross_reference: SGD:mcc

growth in exponential phase
type: Class
subclass of: vegetative growth
definition: Growth in liquid culture during the exponential phase.
has_obo_namespace: observable
id: APO:0000310
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: growth in exponential phase
annotated property: definition
annotated target: Growth in liquid culture during the exponential phase.
database_cross_reference: SGD:mcc

growth in post-diauxic phase
type: Class
subclass of: vegetative growth
definition: Growth in liquid culture during the post-diauxic phase.
has_obo_namespace: observable
id: APO:0000311
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: growth in post-diauxic phase
annotated property: definition
annotated target: Growth in liquid culture during the post-diauxic phase.
database_cross_reference: SGD:mcc

cell death
type: Class
subclass of: cellular processes
definition: The cessation of the life of an individual cell.
has_obo_namespace: observable
id: APO:0000312
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: cell death
annotated property: definition
annotated target: The cessation of the life of an individual cell.
database_cross_reference: SGD:mcc

autolysis
type: Class
subclass of: cell death
definition: A regulated form of cell death that occurs in stationary phase mycelial cultures of filamentous fungi, often in response to carbon starvation. It is characterized by cell wall degradation, hyphal fragmentation and vacuolization, production of intracellular and extracellular hydrolases, and release of ammonia.
has_obo_namespace: observable
id: APO:0000313
in_subset: AspGD

Axiom
annotated source: autolysis
annotated property: definition
annotated target: A regulated form of cell death that occurs in stationary phase mycelial cultures of filamentous fungi, often in response to carbon starvation. It is characterized by cell wall degradation, hyphal fragmentation and vacuolization, production of intracellular and extracellular hydrolases, and release of ammonia.
database_cross_reference: AspGD:mcc
database_cross_reference: PMID:12892635
database_cross_reference: PMID:18975147
database_cross_reference: PMID:19286987

cell lysis
type: Class
subclass of: cell death
definition: The breaking apart of a fully formed cell.
has_obo_namespace: observable
id: APO:0000314
in_subset: AspGD
in_subset: CryptoGD

Axiom
annotated source: cell lysis
annotated property: definition
annotated target: The breaking apart of a fully formed cell.
database_cross_reference: AspGD:di

plasma membrane morphology
type: Class
subclass of: subcellular morphology
definition: The size, shape, or appearance of the plasma membrane.
has_obo_namespace: observable
id: APO:0000315
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: plasma membrane morphology
annotated property: definition
annotated target: The size, shape, or appearance of the plasma membrane.
database_cross_reference: SGD:mcc

chronological lifespan
type: Class
subclass of: lifespan
definition: The number of days that a culture remains viable in stationary phase.
has_obo_namespace: observable
id: APO:0000316
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: chronological lifespan
annotated property: definition
annotated target: The number of days that a culture remains viable in stationary phase.
database_cross_reference: PMID:17634577
database_cross_reference: SGD:mcc

replicative lifespan
type: Class
subclass of: lifespan
definition: The number of divisions that a cell undergoes before dying.
has_obo_namespace: observable
id: APO:0000317
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: replicative lifespan
annotated property: definition
annotated target: The number of divisions that a cell undergoes before dying.
database_cross_reference: PMID:17634577
database_cross_reference: SGD:mcc

Affinity Capture-Luminescence
type: Class
subclass of: physical interactions
definition: An interaction is inferred when a bait protein, tagged with luciferase, is enzymatically detected in immunoprecipitates of the prey protein as light emission. The prey protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag.
has_obo_namespace: experiment_type
id: APO:0000318
in_subset: SGD

Axiom
annotated source: Affinity Capture-Luminescence
annotated property: definition
annotated target: An interaction is inferred when a bait protein, tagged with luciferase, is enzymatically detected in immunoprecipitates of the prey protein as light emission. The prey protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag.
database_cross_reference: BioGRID:mcc

chlamydospore formation
type: Class
subclass of: development
definition: Formation of chlamydospores, which are large, asexual, one-celled spores with a thickened, refractile cell wall that are borne on the ends of suspensor cells attached to hyphae or pseudohyphae.
has_obo_namespace: observable
id: APO:0000319
in_subset: CGD

Axiom
annotated source: chlamydospore formation
annotated property: definition
annotated target: Formation of chlamydospores, which are large, asexual, one-celled spores with a thickened, refractile cell wall that are borne on the ends of suspensor cells attached to hyphae or pseudohyphae.
database_cross_reference: CGD:mcc
database_cross_reference: PMID:14663094

germ tube formation
type: Class
subclass of: filamentous growth
definition: Formation of an elongated evagination that develops from a yeast-form cell and continues growth to become a hyphal cell. The initiation of germ tube growth is referred to as the yeast-to-hyphal transition.
has_obo_namespace: observable
id: APO:0000320
in_subset: CGD

Axiom
annotated source: germ tube formation
annotated property: definition
annotated target: Formation of an elongated evagination that develops from a yeast-form cell and continues growth to become a hyphal cell. The initiation of germ tube growth is referred to as the yeast-to-hyphal transition.
database_cross_reference: CGD:mcc
database_cross_reference: PMID:17506678

phenotypic switching
type: Class
subclass of: development
definition: The ability to undergo a reversible change from one distinct phenotype to another, resulting from changes in gene expression rather than from mutation. Cells in a specific phenotypic state have a distinct cellular morphology, which may be reflected in distinct colony morphology and different cellular properties, such as the ability to mate. A well-known example of phenotypic switching is the white-opaque switch of Candida albicans.
has_obo_namespace: observable
id: APO:0000321
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: phenotypic switching
annotated property: definition
annotated target: The ability to undergo a reversible change from one distinct phenotype to another, resulting from changes in gene expression rather than from mutation. Cells in a specific phenotypic state have a distinct cellular morphology, which may be reflected in distinct colony morphology and different cellular properties, such as the ability to mate. A well-known example of phenotypic switching is the white-opaque switch of Candida albicans.
database_cross_reference: CGD:mcc
database_cross_reference: PMID:16313617
database_cross_reference: PMID:17506678

Negative Genetic
type: Class
subclass of: genetic interactions
has_obo_namespace: experiment_type
id: APO:0000322
in_subset: SGD

Positive Genetic
type: Class
subclass of: genetic interactions
has_obo_namespace: experiment_type
id: APO:0000323
in_subset: SGD

resistance to killing by host cells
type: Class
subclass of: interaction with host/environment
definition: The ability of a pathogen to survive an attack by host cells such as neutrophils.
created by: Maria
creation date: 2010-05-12T09:18:26Z
has_obo_namespace: observable
id: APO:0000324
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: resistance to killing by host cells
annotated property: definition
annotated target: The ability of a pathogen to survive an attack by host cells such as neutrophils.
database_cross_reference: CGD:mcc
database_cross_reference: PMID:20415594

resistance to phagocytosis
type: Class
subclass of: interaction with host/environment
definition: The ability of a pathogen to evade or escape phagocytosis by host cells such as macrophages.
created by: Maria
creation date: 2010-05-12T09:20:05Z
has_obo_namespace: observable
id: APO:0000325
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: resistance to phagocytosis
annotated property: definition
annotated target: The ability of a pathogen to evade or escape phagocytosis by host cells such as macrophages.
database_cross_reference: CGD:mcc
database_cross_reference: PMID:16759234

desiccation resistance
type: Class
subclass of: stress resistance
definition: The level of resistance to air-drying or desiccation stress.
created by: Maria
creation date: 2010-05-12T09:22:02Z
has_exact_synonym: resistance to desiccation
has_obo_namespace: observable
id: APO:0000326
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: desiccation resistance
annotated property: definition
annotated target: The level of resistance to air-drying or desiccation stress.
database_cross_reference: PMID:18224659
database_cross_reference: SGD:mcc

hydrostatic pressure resistance
type: Class
subclass of: stress resistance
definition: The level of resistance to increased hydrostatic pressure.
created by: Maria
creation date: 2010-05-12T09:22:53Z
has_exact_synonym: resistance to hydrostatic pressure
has_obo_namespace: observable
id: APO:0000327
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: hydrostatic pressure resistance
annotated property: definition
annotated target: The level of resistance to increased hydrostatic pressure.
database_cross_reference: PMID:11027279
database_cross_reference: PMID:18245339
database_cross_reference: SGD:mcc

unknown ploidy, classical genetics
type: Class
subclass of: classical genetics
definition: Any classical genetics experiment carried out in a background where the ploidy of the mutation or strain is unknown.
created by: Maria
creation date: 2010-10-26T03:35:09Z
has_obo_namespace: experiment_type
id: APO:0000328
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: unknown ploidy, classical genetics
annotated property: definition
annotated target: Any classical genetics experiment carried out in a background where the ploidy of the mutation or strain is unknown.
database_cross_reference: CGD:mcc

induction of host response
type: Class
subclass of: interaction with host/environment
definition: The induction of host immune cell differentiation, cytokine secretion, cytokine transcriptional regulation or other related host responses to infection by or contact with a microbe.
created by: Maria
creation date: 2011-01-28T09:00:49Z
has_obo_namespace: observable
id: APO:0000329
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD

Axiom
annotated source: induction of host response
annotated property: definition
annotated target: The induction of host immune cell differentiation, cytokine secretion, cytokine transcriptional regulation or other related host responses to infection by or contact with a microbe.
database_cross_reference: AspGD:doi

haploproficient
type: Class
subclass of: fitness
definition: The heterozygous diploid displays an increased growth rate relative to a diploid that is homozygous wild type at that locus.
created by: mariacostanzo
creation date: 2013-04-16T01:29:09Z
has_obo_namespace: observable
id: APO:0000330
in_subset: AspGD
in_subset: CryptoGD
in_subset: SGD
in_subset: phenotypeslim cerevisiae

Axiom
annotated source: haploproficient
annotated property: definition
annotated target: The heterozygous diploid displays an increased growth rate relative to a diploid that is homozygous wild type at that locus.
database_cross_reference: PMID:23531409
database_cross_reference: SGD:mcc

capsule formation
type: Class
subclass of: formation of anatomical structure
definition: The formation of a coating of extracellular polysaccharide material, as in fungi such a Cryptococcus.
created by: mariacostanzo
creation date: 2013-04-16T02:21:42Z
has_obo_namespace: observable
id: APO:0000331
in_subset: CryptoGD

Axiom
annotated source: capsule formation
annotated property: definition
annotated target: The formation of a coating of extracellular polysaccharide material, as in fungi such a Cryptococcus.
database_cross_reference: CryptoGD:doi

peg formation
type: Class
subclass of: formation of anatomical structure
definition: Formation of a protrusion in a subapical hyphal cell that fuses with a clamp cell to form a fused clamp, in Basidiomycetes.
created by: mariacostanzo
creation date: 2013-04-16T02:23:17Z
has_obo_namespace: observable
id: APO:0000332
in_subset: CryptoGD

Axiom
annotated source: peg formation
annotated property: definition
annotated target: Formation of a protrusion in a subapical hyphal cell that fuses with a clamp cell to form a fused clamp, in Basidiomycetes.
database_cross_reference: CryptoGD:doi

acquired thermotolerance
type: Class
subclass of: thermotolerance
definition: The ability to survive a period of exposure to an acute heat shock after brief pretreatment at a mildly elevated temperature.
created by: mariacostanzo
creation date: 2014-06-30T03:27:33Z
has_obo_namespace: observable
id: APO:0000333
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: acquired thermotolerance
annotated property: definition
annotated target: The ability to survive a period of exposure to an acute heat shock after brief pretreatment at a mildly elevated temperature.
database_cross_reference: SGD:RSN

innate thermotolerance
type: Class
subclass of: thermotolerance
definition: The natural or innate ability of a cell to survive a period of exposure to an acute heat shock without pretreatment.
created by: mariacostanzo
creation date: 2014-06-30T03:28:34Z
has_obo_namespace: observable
id: APO:0000334
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: innate thermotolerance
annotated property: definition
annotated target: The natural or innate ability of a cell to survive a period of exposure to an acute heat shock without pretreatment.
database_cross_reference: SGD:RSN

size of nucleolus
type: Class
subclass of: nucleolar morphology
definition: The size of the nucleolus.
created by: mariacostanzo
creation date: 2014-06-30T03:30:01Z
has_obo_namespace: observable
id: APO:0000335
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: size of nucleolus
annotated property: definition
annotated target: The size of the nucleolus.
database_cross_reference: SGD:mcc

aneuploidy
type: Class
subclass of: chromosome/plasmid maintenance
definition: The gain or loss of a chromosome, so that the cell has a number of chromosomes that is not a multiple of the usual complement. Aneuploidy may also be partial, affecting a large segment of a chromosome that is lost or translocated to a different chromosome.
created by: mariacostanzo
creation date: 2014-06-30T03:30:54Z
has_obo_namespace: observable
id: APO:0000336
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: aneuploidy
annotated property: definition
annotated target: The gain or loss of a chromosome, so that the cell has a number of chromosomes that is not a multiple of the usual complement. Aneuploidy may also be partial, affecting a large segment of a chromosome that is lost or translocated to a different chromosome.
database_cross_reference: SGD:mcc

polyploidy
type: Class
subclass of: chromosome/plasmid maintenance
definition: The gain of an entire set or sets of chromosomes beyond the usual complement.
created by: mariacostanzo
creation date: 2014-06-30T03:31:39Z
has_obo_namespace: observable
id: APO:0000337
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: polyploidy
annotated property: definition
annotated target: The gain of an entire set or sets of chromosomes beyond the usual complement.
database_cross_reference: SGD:mcc

micronucleophagy
type: Class
subclass of: autophagy
definition: A form of microautophagy selective for the nucleus that occurs in response to starvation, damage or during a shift in environmental conditions.
created by: mariacostanzo
creation date: 2014-06-30T03:32:30Z
has_exact_synonym: piecemeal microautophagy of the nucleus
has_obo_namespace: observable
id: APO:0000338
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: micronucleophagy
annotated property: definition
annotated target: A form of microautophagy selective for the nucleus that occurs in response to starvation, damage or during a shift in environmental conditions.
database_cross_reference: SGD:RSN

Axiom
annotated source: micronucleophagy
annotated property: has_exact_synonym
annotated target: piecemeal microautophagy of the nucleus
database_cross_reference: SGD:mcc

ribophagy
type: Class
subclass of: autophagy
definition: A form of macroautophagy selective for ribosomes that occurs in response to starvation, damage or during a shift in environmental conditions.
created by: mariacostanzo
creation date: 2014-06-30T03:33:49Z
has_obo_namespace: observable
id: APO:0000339
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: ribophagy
annotated property: definition
annotated target: A form of macroautophagy selective for ribosomes that occurs in response to starvation, damage or during a shift in environmental conditions.
database_cross_reference: SGD:RSN

reticulophagy
type: Class
subclass of: autophagy
definition: A form of macroautophagy selective for the endoplasmic reticulum that occurs in response to starvation, ER stress, aggregate accumulation or during a shift in environmental conditions.
created by: mariacostanzo
creation date: 2014-06-30T03:34:39Z
has_obo_namespace: observable
id: APO:0000340
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: reticulophagy
annotated property: definition
annotated target: A form of macroautophagy selective for the endoplasmic reticulum that occurs in response to starvation, ER stress, aggregate accumulation or during a shift in environmental conditions.
database_cross_reference: SGD:RSN

nucleophagy
type: Class
subclass of: autophagy
definition: Selective degradation of nucleoplasm that occurs upon nitrogen starvation, in which parts of the nucleus and perinuclear ER are packaged into autophagosomes and delivered to the vacuole for degradation. In S. cerevisiae, Atg39p is involved in this process.
created by: mariacostanzo
creation date: 2015-06-12T01:58:26Z
has_obo_namespace: observable
id: APO:0000341
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: nucleophagy
annotated property: definition
annotated target: Selective degradation of nucleoplasm that occurs upon nitrogen starvation, in which parts of the nucleus and perinuclear ER are packaged into autophagosomes and delivered to the vacuole for degradation. In S. cerevisiae, Atg39p is involved in this process.
database_cross_reference: PMID:26040717
database_cross_reference: SGD:mcc

late nucleophagy
type: Class
subclass of: autophagy
definition: The autophagic degradation of bulk nucleoplasm that occurs after prolonged nitrogen starvation. In late nucleophagy, delivery of the nuclear cargo to the vacuole does not involve autophagosomes.
created by: mariacostanzo
creation date: 2015-06-12T01:59:32Z
has_obo_namespace: observable
id: APO:0000342
in_subset: AspGD
in_subset: CGD
in_subset: CryptoGD
in_subset: SGD

Axiom
annotated source: late nucleophagy
annotated property: definition
annotated target: The autophagic degradation of bulk nucleoplasm that occurs after prolonged nitrogen starvation. In late nucleophagy, delivery of the nuclear cargo to the vacuole does not involve autophagosomes.
database_cross_reference: PMID:22768199
database_cross_reference: PMID:24013549
database_cross_reference: SGD:mcc

YPO_0000001
type: Class
IAO_0000231: IAO_0000227
term replaced by: qualifier
deprecated: true

YPO_0000002
type: Class
IAO_0000231: IAO_0000227
term replaced by: abnormal
deprecated: true

YPO_0000003
type: Class
IAO_0000231: IAO_0000227
term replaced by: decreased
deprecated: true

YPO_0000004
type: Class
IAO_0000231: IAO_0000227
term replaced by: increased
deprecated: true

YPO_0000005
type: Class
IAO_0000231: IAO_0000227
term replaced by: absent
deprecated: true

YPO_0000006
type: Class
IAO_0000231: IAO_0000227
term replaced by: mutant_type
deprecated: true

YPO_0000007
type: Class
IAO_0000231: IAO_0000227
term replaced by: misexpression
deprecated: true

YPO_0000008
type: Class
IAO_0000231: IAO_0000227
term replaced by: overexpression
deprecated: true

YPO_0000009
type: Class
IAO_0000231: IAO_0000227
term replaced by: activation
deprecated: true

YPO_0000010
type: Class
IAO_0000231: IAO_0000227
term replaced by: gain of function
deprecated: true

YPO_0000011
type: Class
IAO_0000231: IAO_0000227
term replaced by: null mutant
deprecated: true

YPO_0000012
type: Class
IAO_0000231: IAO_0000227
term replaced by: repressible
deprecated: true

YPO_0000013
type: Class
IAO_0000231: IAO_0000227
term replaced by: reduction of function
deprecated: true

YPO_0000014
type: Class
IAO_0000231: IAO_0000227
term replaced by: conditional
deprecated: true

YPO_0000015
type: Class
IAO_0000231: IAO_0000227
term replaced by: unspecified
deprecated: true

YPO_0000016
type: Class
IAO_0000231: IAO_0000227
term replaced by: not yet recorded
deprecated: true

YPO_0000017
type: Class
IAO_0000231: IAO_0000227
term replaced by: observable
deprecated: true

YPO_0000018
type: Class
IAO_0000231: IAO_0000227
term replaced by: experiment_type
deprecated: true

YPO_0000019
type: Class
IAO_0000231: IAO_0000227
term replaced by: systematic null mutation set
deprecated: true

YPO_0000020
type: Class
IAO_0000231: IAO_0000227
term replaced by: classical genetics
deprecated: true

YPO_0000021
type: Class
IAO_0000231: IAO_0000227
term replaced by: competitive growth
deprecated: true

YPO_0000022
type: Class
IAO_0000231: IAO_0000227
term replaced by: protein activity
deprecated: true

YPO_0000023
type: Class
IAO_0000231: IAO_0000227
term replaced by: development
deprecated: true

YPO_0000024
type: Class
IAO_0000231: IAO_0000227
term replaced by: budding
deprecated: true

YPO_0000025
type: Class
IAO_0000231: IAO_0000227
term replaced by: axial budding pattern
deprecated: true

YPO_0000026
type: Class
IAO_0000231: IAO_0000227
term replaced by: bipolar budding pattern
deprecated: true

YPO_0000027
type: Class
IAO_0000231: IAO_0000227
term replaced by: filamentous growth
deprecated: true

YPO_0000028
type: Class
IAO_0000231: IAO_0000227
term replaced by: invasive growth
deprecated: true

YPO_0000029
type: Class
IAO_0000231: IAO_0000227
term replaced by: pseudohyphal growth
deprecated: true

YPO_0000030
type: Class
IAO_0000231: IAO_0000227
term replaced by: lifespan
deprecated: true

YPO_0000031
type: Class
IAO_0000231: IAO_0000227
term replaced by: sexual cycle
deprecated: true

YPO_0000032
type: Class
IAO_0000231: IAO_0000227
term replaced by: mating response
deprecated: true

YPO_0000033
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell fusion
deprecated: true

YPO_0000034
type: Class
IAO_0000231: IAO_0000227
term replaced by: mating efficiency
deprecated: true

YPO_0000035
type: Class
IAO_0000231: IAO_0000227
term replaced by: nuclear fusion during mating
deprecated: true

YPO_0000036
type: Class
IAO_0000231: IAO_0000227
term replaced by: pheromone production
deprecated: true

YPO_0000037
type: Class
IAO_0000231: IAO_0000227
term replaced by: pheromone sensitivity
deprecated: true

YPO_0000038
type: Class
IAO_0000231: IAO_0000227
term replaced by: shmoo formation
deprecated: true

YPO_0000039
type: Class
IAO_0000231: IAO_0000227
term replaced by: meiosis
deprecated: true

YPO_0000040
type: Class
IAO_0000231: IAO_0000227
term replaced by: meiotic recombination
deprecated: true

YPO_0000041
type: Class
IAO_0000231: IAO_0000227
term replaced by: sporulation
deprecated: true

YPO_0000042
type: Class
IAO_0000231: IAO_0000227
term replaced by: spore germination
deprecated: true

YPO_0000043
type: Class
IAO_0000231: IAO_0000227
term replaced by: spore wall formation
deprecated: true

YPO_0000044
type: Class
IAO_0000231: IAO_0000227
term replaced by: sporulation efficiency
deprecated: true

YPO_0000045
type: Class
IAO_0000231: IAO_0000227
term replaced by: sterile
deprecated: true

YPO_0000046
type: Class
IAO_0000231: IAO_0000227
term replaced by: silencing
deprecated: true

YPO_0000047
type: Class
IAO_0000231: IAO_0000227
term replaced by: transposable element transposition
deprecated: true

YPO_0000048
type: Class
IAO_0000231: IAO_0000227
term replaced by: virulence
deprecated: true

YPO_0000049
type: Class
IAO_0000231: IAO_0000227
term replaced by: morphology
deprecated: true

YPO_0000050
type: Class
IAO_0000231: IAO_0000227
term replaced by: cellular morphology
deprecated: true

YPO_0000051
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell shape
deprecated: true

YPO_0000052
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell size
deprecated: true

YPO_0000053
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell wall morphology
deprecated: true

YPO_0000054
type: Class
IAO_0000231: IAO_0000227
term replaced by: cytoskeleton morphology
deprecated: true

YPO_0000055
type: Class
IAO_0000231: IAO_0000227
term replaced by: mitochondrial morphology
deprecated: true

YPO_0000056
type: Class
IAO_0000231: IAO_0000227
term replaced by: bud neck morphology
deprecated: true

YPO_0000057
type: Class
IAO_0000231: IAO_0000227
term replaced by: nuclear morphology
deprecated: true

YPO_0000058
type: Class
IAO_0000231: IAO_0000227
term replaced by: peroxisomal morphology
deprecated: true

YPO_0000059
type: Class
IAO_0000231: IAO_0000227
term replaced by: vacuolar morphology
deprecated: true

YPO_0000060
type: Class
IAO_0000231: IAO_0000227
term replaced by: colony appearance
deprecated: true

YPO_0000061
type: Class
IAO_0000231: IAO_0000227
term replaced by: colony color
deprecated: true

YPO_0000062
type: Class
IAO_0000231: IAO_0000227
term replaced by: colony shape
deprecated: true

YPO_0000063
type: Class
IAO_0000231: IAO_0000227
term replaced by: colony size
deprecated: true

YPO_0000064
type: Class
IAO_0000231: IAO_0000227
term replaced by: liquid culture appearance
deprecated: true

YPO_0000065
type: Class
IAO_0000231: IAO_0000227
term replaced by: flocculation
deprecated: true

YPO_0000066
type: Class
IAO_0000231: IAO_0000227
term replaced by: cellular processes
deprecated: true

YPO_0000067
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in G1 phase
deprecated: true

YPO_0000068
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest at G2 phase
deprecated: true

YPO_0000069
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest at START
deprecated: true

YPO_0000070
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest
deprecated: true

YPO_0000071
type: Class
IAO_0000231: IAO_0000227
term replaced by: cytokinesis
deprecated: true

YPO_0000072
type: Class
IAO_0000231: IAO_0000227
term replaced by: mitotic cell cycle
deprecated: true

YPO_0000073
type: Class
IAO_0000231: IAO_0000227
term replaced by: intracellular transport
deprecated: true

YPO_0000074
type: Class
IAO_0000231: IAO_0000227
term replaced by: autophagy
deprecated: true

YPO_0000075
type: Class
IAO_0000231: IAO_0000227
term replaced by: endocytosis
deprecated: true

YPO_0000076
type: Class
IAO_0000231: IAO_0000227
term replaced by: mitochondrial transport
deprecated: true

YPO_0000077
type: Class
IAO_0000231: IAO_0000227
term replaced by: nuclear transport
deprecated: true

YPO_0000078
type: Class
IAO_0000231: IAO_0000227
term replaced by: protein secretion
deprecated: true

YPO_0000079
type: Class
IAO_0000231: IAO_0000227
term replaced by: vacuolar transport
deprecated: true

YPO_0000080
type: Class
IAO_0000231: IAO_0000227
term replaced by: stress resistance
deprecated: true

YPO_0000081
type: Class
IAO_0000231: IAO_0000227
term replaced by: killer toxin resistance
deprecated: true

YPO_0000082
type: Class
IAO_0000231: IAO_0000227
term replaced by: osmotic stress resistance
deprecated: true

YPO_0000083
type: Class
IAO_0000231: IAO_0000227
term replaced by: oxidative stress resistance
deprecated: true

YPO_0000084
type: Class
IAO_0000231: IAO_0000227
term replaced by: radiation resistance
deprecated: true

YPO_0000085
type: Class
IAO_0000231: IAO_0000227
term replaced by: UV resistance
deprecated: true

YPO_0000086
type: Class
IAO_0000231: IAO_0000227
term replaced by: X ray resistance
deprecated: true

YPO_0000087
type: Class
IAO_0000231: IAO_0000227
term replaced by: resistance to chemicals
deprecated: true

YPO_0000088
type: Class
IAO_0000231: IAO_0000227
term replaced by: drug resistance
deprecated: true

YPO_0000089
type: Class
IAO_0000231: IAO_0000227
term replaced by: budding index
deprecated: true

YPO_0000090
type: Class
IAO_0000231: IAO_0000227
term replaced by: metal resistance
deprecated: true

YPO_0000091
type: Class
IAO_0000231: IAO_0000227
term replaced by: starvation resistance
deprecated: true

YPO_0000092
type: Class
IAO_0000231: IAO_0000227
term replaced by: temperature sensitive growth
deprecated: true

YPO_0000093
type: Class
IAO_0000231: IAO_0000227
term replaced by: thermotolerance
deprecated: true

YPO_0000094
type: Class
IAO_0000231: IAO_0000227
term replaced by: metabolism and growth
deprecated: true

YPO_0000095
type: Class
IAO_0000231: IAO_0000227
term replaced by: chemical compound accumulation
deprecated: true

YPO_0000096
type: Class
IAO_0000231: IAO_0000227
term replaced by: nutrient utilization
deprecated: true

YPO_0000097
type: Class
IAO_0000231: IAO_0000227
term replaced by: auxotrophy
deprecated: true

YPO_0000098
type: Class
IAO_0000231: IAO_0000227
term replaced by: utilization of carbon source
deprecated: true

YPO_0000099
type: Class
IAO_0000231: IAO_0000227
term replaced by: utilization of nitrogen source
deprecated: true

YPO_0000100
type: Class
IAO_0000231: IAO_0000227
term replaced by: nutrient uptake
deprecated: true

YPO_0000101
type: Class
IAO_0000231: IAO_0000227
term replaced by: fermentative metabolism
deprecated: true

YPO_0000102
type: Class
IAO_0000231: IAO_0000227
term replaced by: respiratory metabolism
deprecated: true

YPO_0000103
type: Class
IAO_0000231: IAO_0000227
term replaced by: respiratory growth rate
deprecated: true

YPO_0000104
type: Class
IAO_0000231: IAO_0000227
term replaced by: mitochondrial rho- mutation frequency
deprecated: true

YPO_0000105
type: Class
IAO_0000231: IAO_0000227
term replaced by: mitochondrial genome maintenance
deprecated: true

YPO_0000106
type: Class
IAO_0000231: IAO_0000227
term replaced by: vegetative growth
deprecated: true

YPO_0000107
type: Class
IAO_0000231: IAO_0000227
term replaced by: growth rate in exponential phase
deprecated: true

YPO_0000108
type: Class
IAO_0000231: IAO_0000227
term replaced by: growth rate in post-diauxic phase
deprecated: true

YPO_0000109
type: Class
IAO_0000231: IAO_0000227
term replaced by: survival rate in stationary phase
deprecated: true

YPO_0000110
type: Class
IAO_0000231: IAO_0000227
term replaced by: competitive fitness
deprecated: true

YPO_0000111
type: Class
IAO_0000231: IAO_0000227
term replaced by: viability
deprecated: true

YPO_0000112
type: Class
IAO_0000231: IAO_0000227
term replaced by: inviable
deprecated: true

YPO_0000113
type: Class
IAO_0000231: IAO_0000227
term replaced by: viable
deprecated: true

YPO_0000114
type: Class
IAO_0000231: IAO_0000227
term replaced by: large-scale survey
deprecated: true

YPO_0000115
type: Class
IAO_0000231: IAO_0000227
term replaced by: other method
deprecated: true

YPO_0000116
type: Class
IAO_0000231: IAO_0000227
term replaced by: other mutant type
deprecated: true

YPO_0000117
type: Class
IAO_0000231: IAO_0000227
term replaced by: normal
deprecated: true

YPO_0000118
type: Class
IAO_0000231: IAO_0000227
term replaced by: nuclear position
deprecated: true

YPO_0000119
type: Class
IAO_0000231: IAO_0000227
term replaced by: size of nucleus
deprecated: true

YPO_0000120
type: Class
IAO_0000231: IAO_0000227
term replaced by: actin cytoskeleton morphology
deprecated: true

YPO_0000121
type: Class
IAO_0000231: IAO_0000227
term replaced by: bud direction
deprecated: true

YPO_0000122
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in M phase
deprecated: true

YPO_0000123
type: Class
IAO_0000231: IAO_0000227
term replaced by: recovery from pheromone-induced cell cycle arrest
deprecated: true

YPO_0000124
type: Class
IAO_0000231: IAO_0000227
term replaced by: pheromone-induced cell cycle arrest
deprecated: true

YPO_0000125
type: Class
IAO_0000231: IAO_0000227
term replaced by: utilization of phosphorus source
deprecated: true

YPO_0000126
type: Class
IAO_0000231: IAO_0000227
term replaced by: nuclear import
deprecated: true

YPO_0000127
type: Class
IAO_0000231: IAO_0000227
term replaced by: nuclear export
deprecated: true

YPO_0000128
type: Class
IAO_0000231: IAO_0000227
term replaced by: peroxisomal transport
deprecated: true

YPO_0000129
type: Class
IAO_0000231: IAO_0000227
term replaced by: protein transport
deprecated: true

YPO_0000130
type: Class
IAO_0000231: IAO_0000227
term replaced by: small molecule transport
deprecated: true

YPO_0000131
type: Class
IAO_0000231: IAO_0000227
term replaced by: protein/peptide modification
deprecated: true

YPO_0000132
type: Class
IAO_0000231: IAO_0000227
term replaced by: RNA localization
deprecated: true

YPO_0000133
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in metaphase
deprecated: true

YPO_0000134
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest at the metaphase - anaphase transition
deprecated: true

YPO_0000135
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in anaphase
deprecated: true

YPO_0000136
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in early anaphase
deprecated: true

YPO_0000137
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in mid anaphase
deprecated: true

YPO_0000138
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in late anaphase
deprecated: true

YPO_0000139
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in telophase
deprecated: true

YPO_0000140
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in G0 (stationary phase)
deprecated: true

YPO_0000141
type: Class
IAO_0000231: IAO_0000227
term replaced by: critical cell size at START (G1 cell-size checkpoint)
deprecated: true

YPO_0000142
type: Class
IAO_0000231: IAO_0000227
term replaced by: critical cell size at G2/M (cryptic G2/M cell size checkpoint)
deprecated: true

YPO_0000143
type: Class
IAO_0000231: IAO_0000227
term replaced by: chromosome/plasmid maintenance
deprecated: true

YPO_0000144
type: Class
IAO_0000231: IAO_0000227
term replaced by: telomere length
deprecated: true

YPO_0000145
type: Class
IAO_0000231: IAO_0000227
term replaced by: oxidative phosphorylation
deprecated: true

YPO_0000146
type: Class
IAO_0000231: IAO_0000227
term replaced by: systematic repressible mutation set
deprecated: true

YPO_0000147
type: Class
IAO_0000231: IAO_0000227
term replaced by: heat sensitivity
deprecated: true

YPO_0000148
type: Class
IAO_0000231: IAO_0000227
term replaced by: cold sensitivity
deprecated: true

YPO_0000149
type: Class
IAO_0000231: IAO_0000227
term replaced by: protein/peptide accumulation
deprecated: true

YPO_0000150
type: Class
IAO_0000231: IAO_0000227
term replaced by: null homozygous diploid
deprecated: true

YPO_0000151
type: Class
IAO_0000231: IAO_0000227
term replaced by: null heterozygous diploid
deprecated: true

YPO_0000152
type: Class
IAO_0000231: IAO_0000227
term replaced by: haploinsufficient
deprecated: true

YPO_0000153
type: Class
IAO_0000231: IAO_0000227
term replaced by: petite
deprecated: true

YPO_0000154
type: Class
IAO_0000231: IAO_0000227
term replaced by: petite-negative
deprecated: true

YPO_0000155
type: Class
IAO_0000231: IAO_0000227
term replaced by: apoptosis
deprecated: true

YPO_0000156
type: Class
IAO_0000231: IAO_0000227
term replaced by: fermentative growth rate
deprecated: true

YPO_0000157
type: Class
IAO_0000231: IAO_0000227
term replaced by: utilization of iron source
deprecated: true

YPO_0000158
type: Class
IAO_0000231: IAO_0000227
term replaced by: culture appearance
deprecated: true

YPO_0000159
type: Class
IAO_0000231: IAO_0000227
term replaced by: biofilm formation
deprecated: true

YPO_0000160
type: Class
IAO_0000231: IAO_0000227
term replaced by: hyphal growth
deprecated: true

YPO_0000161
type: Class
IAO_0000231: IAO_0000227
term replaced by: multiple
deprecated: true

YPO_0000162
type: Class
IAO_0000231: IAO_0000227
term replaced by: Affinity Capture-MS
deprecated: true

YPO_0000163
type: Class
IAO_0000231: IAO_0000227
term replaced by: Affinity Capture-RNA
deprecated: true

YPO_0000164
type: Class
IAO_0000231: IAO_0000227
term replaced by: interactions
deprecated: true

YPO_0000165
type: Class
IAO_0000231: IAO_0000227
term replaced by: Affinity Capture-Western
deprecated: true

YPO_0000166
type: Class
IAO_0000231: IAO_0000227
term replaced by: Biochemical Activity
deprecated: true

YPO_0000167
type: Class
IAO_0000231: IAO_0000227
term replaced by: Co-crystal Structure
deprecated: true

YPO_0000168
type: Class
IAO_0000231: IAO_0000227
term replaced by: Co-fractionation
deprecated: true

YPO_0000169
type: Class
IAO_0000231: IAO_0000227
term replaced by: Co-localization
deprecated: true

YPO_0000170
type: Class
IAO_0000231: IAO_0000227
term replaced by: Co-purification
deprecated: true

YPO_0000171
type: Class
IAO_0000231: IAO_0000227
term replaced by: Dosage Growth Defect
deprecated: true

YPO_0000172
type: Class
IAO_0000231: IAO_0000227
term replaced by: Dosage Lethality
deprecated: true

YPO_0000173
type: Class
IAO_0000231: IAO_0000227
term replaced by: Dosage Rescue
deprecated: true

YPO_0000174
type: Class
IAO_0000231: IAO_0000227
term replaced by: Epistatic MiniArray Profile
deprecated: true

YPO_0000175
type: Class
IAO_0000231: IAO_0000227
term replaced by: FRET
deprecated: true

YPO_0000176
type: Class
IAO_0000231: IAO_0000227
term replaced by: Far Western
deprecated: true

YPO_0000177
type: Class
IAO_0000231: IAO_0000227
term replaced by: Phenotypic Enhancement
deprecated: true

YPO_0000178
type: Class
IAO_0000231: IAO_0000227
term replaced by: Phenotypic Suppression
deprecated: true

YPO_0000179
type: Class
IAO_0000231: IAO_0000227
term replaced by: Protein-RNA
deprecated: true

YPO_0000180
type: Class
IAO_0000231: IAO_0000227
term replaced by: Protein-peptide
deprecated: true

YPO_0000181
type: Class
IAO_0000231: IAO_0000227
term replaced by: Reconstituted Complex
deprecated: true

YPO_0000182
type: Class
IAO_0000231: IAO_0000227
term replaced by: Synthetic Growth Defect
deprecated: true

YPO_0000183
type: Class
IAO_0000231: IAO_0000227
term replaced by: Synthetic Lethality
deprecated: true

YPO_0000184
type: Class
IAO_0000231: IAO_0000227
term replaced by: Synthetic Rescue
deprecated: true

YPO_0000185
type: Class
IAO_0000231: IAO_0000227
term replaced by: Two-hybrid
deprecated: true

YPO_0000186
type: Class
IAO_0000231: IAO_0000227
term replaced by: genetic interactions
deprecated: true

YPO_0000187
type: Class
IAO_0000231: IAO_0000227
term replaced by: physical interactions
deprecated: true

YPO_0000188
type: Class
IAO_0000231: IAO_0000227
term replaced by: Affinity Chromatography
deprecated: true

YPO_0000189
type: Class
IAO_0000231: IAO_0000227
term replaced by: Affinity Precipitation
deprecated: true

YPO_0000190
type: Class
IAO_0000231: IAO_0000227
term replaced by: Biochemical Assay
deprecated: true

YPO_0000191
type: Class
IAO_0000231: IAO_0000227
term replaced by: Purified Complex
deprecated: true

YPO_0000192
type: Class
IAO_0000231: IAO_0000227
term replaced by: phenotype assays
deprecated: true

YPO_0000193
type: Class
IAO_0000231: IAO_0000227
term replaced by: resistance to enzymatic treatment
deprecated: true

YPO_0000194
type: Class
IAO_0000231: IAO_0000227
term replaced by: ionizing radiation resistance
deprecated: true

YPO_0000195
type: Class
IAO_0000231: IAO_0000227
term replaced by: gamma ray resistance
deprecated: true

YPO_0000196
type: Class
IAO_0000231: IAO_0000227
term replaced by: mating type switching
deprecated: true

YPO_0000197
type: Class
IAO_0000231: IAO_0000227
term replaced by: colony sectoring
deprecated: true

YPO_0000198
type: Class
IAO_0000231: IAO_0000227
term replaced by: mutation frequency
deprecated: true

YPO_0000199
type: Class
IAO_0000231: IAO_0000227
term replaced by: chitin deposition
deprecated: true

YPO_0000200
type: Class
IAO_0000231: IAO_0000227
term replaced by: budding pattern
deprecated: true

YPO_0000201
type: Class
IAO_0000231: IAO_0000227
term replaced by: acid pH resistance
deprecated: true

YPO_0000202
type: Class
IAO_0000231: IAO_0000227
term replaced by: alkaline pH resistance
deprecated: true

YPO_0000203
type: Class
IAO_0000231: IAO_0000227
term replaced by: hypoosmotic stress resistance
deprecated: true

YPO_0000204
type: Class
IAO_0000231: IAO_0000227
term replaced by: hyperosmotic stress resistance
deprecated: true

YPO_0000205
type: Class
IAO_0000231: IAO_0000227
term replaced by: ionic stress resistance
deprecated: true

YPO_0000206
type: Class
IAO_0000231: IAO_0000227
term replaced by: heterozygous diploid
deprecated: true

YPO_0000207
type: Class
IAO_0000231: IAO_0000227
term replaced by: homozygous diploid
deprecated: true

YPO_0000208
type: Class
IAO_0000231: IAO_0000227
term replaced by: chromosome segregation
deprecated: true

YPO_0000209
type: Class
IAO_0000231: IAO_0000227
term replaced by: protein/peptide distribution
deprecated: true

YPO_0000210
type: Class
IAO_0000231: IAO_0000227
term replaced by: anaerobic metabolism
deprecated: true

YPO_0000211
type: Class
IAO_0000231: IAO_0000227
term replaced by: anaerobic growth rate
deprecated: true

YPO_0000212
type: Class
IAO_0000231: IAO_0000227
term replaced by: bud morphology
deprecated: true

YPO_0000213
type: Class
IAO_0000231: IAO_0000227
term replaced by: spindle morphology
deprecated: true

YPO_0000214
type: Class
IAO_0000231: IAO_0000227
term replaced by: position of spindle pole body
deprecated: true

YPO_0000215
type: Class
IAO_0000231: IAO_0000227
term replaced by: toxin resistance
deprecated: true

YPO_0000216
type: Class
IAO_0000231: IAO_0000227
term replaced by: fitness
deprecated: true

YPO_0000217
type: Class
IAO_0000231: IAO_0000227
term replaced by: essentiality
deprecated: true

YPO_0000218
type: Class
IAO_0000231: IAO_0000227
term replaced by: redox state
deprecated: true

YPO_0000219
type: Class
IAO_0000231: IAO_0000227
term replaced by: utilization of sulfur source
deprecated: true

YPO_0000220
type: Class
IAO_0000231: IAO_0000227
term replaced by: necrotic cell death
deprecated: true

YPO_0000221
type: Class
IAO_0000231: IAO_0000227
term replaced by: septum formation
deprecated: true

YPO_0000222
type: Class
IAO_0000231: IAO_0000227
term replaced by: chemical compound excretion
deprecated: true

YPO_0000223
type: Class
IAO_0000231: IAO_0000227
term replaced by: mating projection morphology
deprecated: true

YPO_0000224
type: Class
IAO_0000231: IAO_0000227
term replaced by: RNA accumulation
deprecated: true

YPO_0000225
type: Class
IAO_0000231: IAO_0000227
term replaced by: mitotic recombination
deprecated: true

YPO_0000226
type: Class
IAO_0000231: IAO_0000227
term replaced by: subcellular morphology
deprecated: true

YPO_0000227
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest in S phase
deprecated: true

YPO_0000228
type: Class
IAO_0000231: IAO_0000227
term replaced by: dominant negative
deprecated: true

YPO_0000229
type: Class
IAO_0000231: IAO_0000227
term replaced by: homozygous diploid
deprecated: true

YPO_0000230
type: Class
IAO_0000231: IAO_0000227
term replaced by: heterozygous diploid
deprecated: true

YPO_0000231
type: Class
IAO_0000231: IAO_0000227
term replaced by: homozygous diploid, large-scale survey
deprecated: true

YPO_0000232
type: Class
IAO_0000231: IAO_0000227
term replaced by: heterozygous diploid, large-scale survey
deprecated: true

YPO_0000233
type: Class
IAO_0000231: IAO_0000227
term replaced by: homozygous diploid, competitive growth
deprecated: true

YPO_0000234
type: Class
IAO_0000231: IAO_0000227
term replaced by: heterozygous diploid, competitive growth
deprecated: true

YPO_0000235
type: Class
IAO_0000231: IAO_0000227
term replaced by: systematic mutation set
deprecated: true

YPO_0000236
type: Class
IAO_0000231: IAO_0000227
term replaced by: homozygous diploid, systematic mutation set
deprecated: true

YPO_0000237
type: Class
IAO_0000231: IAO_0000227
term replaced by: heterozygous diploid, systematic mutation set
deprecated: true

YPO_0000238
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle arrest at the G2/M phase transition
deprecated: true

YPO_0000239
type: Class
IAO_0000231: IAO_0000227
term replaced by: pexophagy
deprecated: true

YPO_0000240
type: Class
IAO_0000231: IAO_0000227
term replaced by: mitophagy
deprecated: true

YPO_0000241
type: Class
IAO_0000231: IAO_0000227
term replaced by: freeze-thaw resistance
deprecated: true

YPO_0000242
type: Class
IAO_0000231: IAO_0000227
term replaced by: lipid particle morphology
deprecated: true

YPO_0000243
type: Class
IAO_0000231: IAO_0000227
term replaced by: Golgi morphology
deprecated: true

YPO_0000244
type: Class
IAO_0000231: IAO_0000227
term replaced by: PCA
deprecated: true

YPO_0000246
type: Class
IAO_0000231: IAO_0000227
term replaced by: increased rate
deprecated: true

YPO_0000247
type: Class
IAO_0000231: IAO_0000227
term replaced by: decreased duration
deprecated: true

YPO_0000248
type: Class
IAO_0000231: IAO_0000227
term replaced by: increased duration
deprecated: true

YPO_0000249
type: Class
IAO_0000231: IAO_0000227
term replaced by: delayed
deprecated: true

YPO_0000250
type: Class
IAO_0000231: IAO_0000227
term replaced by: arrested
deprecated: true

YPO_0000251
type: Class
IAO_0000231: IAO_0000227
term replaced by: premature
deprecated: true

YPO_0000252
type: Class
IAO_0000231: IAO_0000227
term replaced by: normal rate
deprecated: true

YPO_0000253
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression
deprecated: true

YPO_0000254
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in G2 phase
deprecated: true

YPO_0000255
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in G1 phase
deprecated: true

YPO_0000256
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle passage through START
deprecated: true

YPO_0000257
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression through the G2/M phase transition
deprecated: true

YPO_0000258
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in M phase
deprecated: true

YPO_0000259
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle passage through the metaphase-anaphase transition
deprecated: true

YPO_0000260
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in anaphase
deprecated: true

YPO_0000261
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in early anaphase
deprecated: true

YPO_0000262
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in mid anaphase
deprecated: true

YPO_0000263
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in late anaphase
deprecated: true

YPO_0000264
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in metaphase
deprecated: true

YPO_0000265
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in telophase
deprecated: true

YPO_0000266
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression in S phase
deprecated: true

YPO_0000267
type: Class
IAO_0000231: IAO_0000227
term replaced by: entry into G0 (stationary phase)
deprecated: true

YPO_0000268
type: Class
IAO_0000231: IAO_0000227
term replaced by: exit from G0 (stationary phase)
deprecated: true

YPO_0000269
type: Class
IAO_0000231: IAO_0000227
term replaced by: cell cycle progression through the G1/S phase transition
deprecated: true

YPO_0000270
type: Class
IAO_0000231: IAO_0000227
term replaced by: endoplasmic reticulum morphology
deprecated: true

YPO_0000271
type: Class
IAO_0000231: IAO_0000227
term replaced by: RNA modification
deprecated: true

YPO_0000272
type: Class
IAO_0000231: IAO_0000227
term replaced by: Synthetic Haploinsufficiency
deprecated: true

YPO_0000274
type: Class
IAO_0000231: IAO_0000227
term replaced by: prion state
deprecated: true

YPO_0000275
type: Class
IAO_0000231: IAO_0000227
term replaced by: prion inheritance
deprecated: true

YPO_0000276
type: Class
IAO_0000231: IAO_0000227
term replaced by: prion formation
deprecated: true

YPO_0000277
type: Class
IAO_0000231: IAO_0000227
term replaced by: prion loss
deprecated: true

YPO_0000278
type: Class
IAO_0000231: IAO_0000227
term replaced by: normal duration
deprecated: true

curators
type: Class
IAO_0000231: IAO_0000227
term replaced by: decreased rate
term replaced by: nucleolar morphology
deprecated: true