format-version: 1.2 data-version: releases/2016-10-19 synonymtypedef: acronym "acronym" broad synonymtypedef: anamorph "anamorph" related synonymtypedef: blast_name "blast name" related synonymtypedef: common_name "common name" exact synonymtypedef: equivalent_name "equivalent name" exact synonymtypedef: genbank_acronym "genbank acronym" broad synonymtypedef: genbank_anamorph "genbank anamorph" related synonymtypedef: genbank_common_name "genbank common name" exact synonymtypedef: genbank_synonym "genbank synonym" related synonymtypedef: human "synonym typically used in the context of human anatomy" NARROW synonymtypedef: in_part "in-part" related synonymtypedef: misnomer "misnomer" related synonymtypedef: misspelling "misspelling" related synonymtypedef: scientific_name "scientific name" exact synonymtypedef: synonym "synonym" related synonymtypedef: teleomorph "teleomorph" related synonymtypedef: vertebrate "synonym typically used in the context of vertebrate anatomy" NARROW remark: CTENO is an ontology describing the anatomy and developmet of ctenophores. remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 1874 Logical Axioms: 473] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 552 Logical Axioms: 89] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 24 Logical Axioms: 6] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 33 Logical Axioms: 11] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 313 Logical Axioms: 153] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 99 Logical Axioms: 49] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 68 Logical Axioms: 12] remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 666 Logical Axioms: 354] ontology: cteno [Term] id: BSPO:0000000 name: left side namespace: spatial def: "The side of an organism that is left of the sagittal plane." [BSPO:cjm] synonym: "left" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000110 BSPO:0000007 ! left_of right side relationship: BSPO:0015007 BSPO:0000017 ! starts_axis left-right axis [Term] id: BSPO:0000001 name: upper side namespace: spatial comment: Consider merging with superior side. synonym: "upper" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0015007 BSPO:0000011 ! starts_axis upper-lower axis [Term] id: BSPO:0000002 name: lower side namespace: spatial comment: Consider merging with inferior side. synonym: "lower" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0015001 BSPO:0000011 ! finishes_axis upper-lower axis [Term] id: BSPO:00000021 name: deep-superficial gradient (obsolete) namespace: spatial comment: was made obsolete because the ID had too many digits is_obsolete: true replaced_by: BSPO:0000021 [Term] id: BSPO:0000003 name: deep side namespace: spatial synonym: "deep" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000107 BSPO:0000004 ! deep_to superficial side relationship: BSPO:0015007 BSPO:0000012 ! starts_axis deep-superficial axis [Term] id: BSPO:0000004 name: superficial side namespace: spatial synonym: "superficial" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0015001 BSPO:0000012 ! finishes_axis deep-superficial axis [Term] id: BSPO:0000005 name: anatomical surface namespace: spatial def: "A 2D surface of an anatomical continuant." [BSPO:cjm] comment: to be merged into CARO synonym: "surface" EXACT [] xref: FMA:24137 is_a: CARO:0000010 ! anatomical boundary [Term] id: BSPO:0000006 name: anatomical margin namespace: spatial def: "Fiat anatomical region extending a short distance from the boundary of an object inwards." [BSPO:cjm] synonym: "edge" EXACT [] synonym: "margin" EXACT [] is_a: BSPO:0000070 ! anatomical region [Term] id: BSPO:0000007 name: right side namespace: spatial def: "The side of an organism that is right of the sagittal plane." [BSPO:cjm, BSPO:wd] synonym: "right" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0015001 BSPO:0000017 ! finishes_axis left-right axis [Term] id: BSPO:0000008 name: parasagittal plane namespace: spatial def: "Sagittal plane that divides a bilateral body into unequal left and right parts." [BSPO:mah] synonym: "parasagittal section" EXACT [] is_a: BSPO:0000417 ! sagittal plane [Term] id: BSPO:0000009 name: midsagittal plane namespace: spatial def: "Sagittal plane that divides bilateral body into equal left and right parts." [BSPO:mah] comment: only in bilaterally symmetrical organisms synonym: "median plane" RELATED [] synonym: "median sagittal plane" EXACT [FMA:74563] synonym: "midline plane" EXACT [] synonym: "midsagittal section" EXACT [] xref: FMA:74563 is_a: BSPO:0000417 ! sagittal plane [Term] id: BSPO:0000010 name: anatomical axis namespace: spatial def: "A straight line through space, intersecting an anatomical entity." [BSPO:cjm] comment: Axis directions are defined in terms of axes. xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG is_a: CARO:0000008 ! anatomical line relationship: passes_through CARO:0000000 ! anatomical entity [Term] id: BSPO:0000011 name: upper-lower axis namespace: spatial def: "An anatomical axis determined by gravity." [BSPO:cjm] synonym: "superior-inferior axis" RELATED [] is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000012 name: deep-superficial axis namespace: spatial def: "An axis that extends from an internal position to a more external position in the body or body part." [BSPO:PM] comment: Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'. is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000013 name: anterior-posterior axis namespace: spatial def: "An axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] comment: In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM] synonym: "A-P axis" EXACT [] synonym: "anteroposterior axis" EXACT [] synonym: "AP axis" EXACT [] synonym: "cephalocaudal axis" NARROW [http://en.wikipedia.org/wiki/Anatomical_terms_of_location] synonym: "craniocaudal axis" NARROW vertebrate [] synonym: "longitudinal axis" RELATED [] synonym: "rostral/caudal" NARROW vertebrate [] synonym: "rostrocaudal axis" NARROW vertebrate [] is_a: BSPO:0000010 ! anatomical axis intersection_of: BSPO:0000010 ! anatomical axis intersection_of: BSPO:0015005 BSPO:0000018 ! orthogonal_to transverse plane relationship: BSPO:0000104 BSPO:0000016 ! approximately_perpendicular_to dorsal-ventral axis relationship: BSPO:0015005 BSPO:0000018 ! orthogonal_to transverse plane [Term] id: BSPO:0000014 name: apical-basal axis relative to substrate namespace: spatial def: "An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure." [BSPO:mah] synonym: "apical/basal" EXACT [] synonym: "longitudinal axis" RELATED [] is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000015 name: proximal-distal axis namespace: spatial def: "An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal)." [BSPO:curators, http://en.wikipedia.org/wiki/Anatomical_terms_of_location] comment: In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate. synonym: "proximal/distal" EXACT [] synonym: "proximodistal" EXACT [] is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000016 name: dorsal-ventral axis namespace: spatial def: "An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body." [BSPO:curators] synonym: "anterior-posterior axis" NARROW human [] synonym: "D-V axis" EXACT [] synonym: "dorsoventral axis" EXACT [] synonym: "DV axis" EXACT [] is_a: BSPO:0000010 ! anatomical axis intersection_of: BSPO:0000010 ! anatomical axis intersection_of: BSPO:0015005 BSPO:0000019 ! orthogonal_to horizontal plane relationship: BSPO:0015005 BSPO:0000019 ! orthogonal_to horizontal plane [Term] id: BSPO:0000017 name: left-right axis namespace: spatial def: "An axis that bisects an organism from left to right sides of body, through a sagittal plane." [BSPO:cjm] synonym: "dextro-sinister axis" EXACT [] synonym: "L-R axis" EXACT [] synonym: "left to right axis" EXACT [] synonym: "LR axis" EXACT [] synonym: "R-L axis" EXACT [] synonym: "right to left axis" EXACT [] synonym: "right-left axis" EXACT [] synonym: "RL axis" EXACT [] is_a: BSPO:0000010 ! anatomical axis intersection_of: BSPO:0000010 ! anatomical axis intersection_of: BSPO:0015005 BSPO:0000417 ! orthogonal_to sagittal plane relationship: BSPO:0015005 BSPO:0000417 ! orthogonal_to sagittal plane [Term] id: BSPO:0000018 name: transverse plane namespace: spatial def: "Anatomical plane that divides body into anterior and posterior parts." [BSPO:mah] synonym: "axial plane" EXACT [] synonym: "axial section" EXACT [] synonym: "cross-section" RELATED [] synonym: "transverse section" EXACT [] xref: FMA:12247 is_a: BSPO:0000400 ! anatomical plane [Term] id: BSPO:0000019 name: horizontal plane namespace: spatial def: "Anatomical plane that divides bilateral body into dorsal and ventral parts." [BSPO:mah] synonym: "coronal section" RELATED [] synonym: "frontal plane" EXACT [] synonym: "frontal section" RELATED [] synonym: "horizontal anatomical plane" EXACT [FMA:52810] synonym: "horizontal section" EXACT [] xref: FMA:52810 is_a: BSPO:0000400 ! anatomical plane [Term] id: BSPO:0000020 name: upper-lower gradient namespace: spatial def: "Anatomical gradient that is distributed along the upper-lower axis." [BSPO:wd] is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0015002 BSPO:0000011 ! follows_axis upper-lower axis relationship: BSPO:0015002 BSPO:0000011 ! follows_axis upper-lower axis [Term] id: BSPO:0000021 name: deep-superficial gradient namespace: spatial def: "Anatomical gradient that is distributed along the deep-superficial axis." [BSPO:wd] is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0015002 BSPO:0000012 ! follows_axis deep-superficial axis relationship: BSPO:0015002 BSPO:0000012 ! follows_axis deep-superficial axis [Term] id: BSPO:0000022 name: superior side namespace: spatial def: "The side that is higher relative to the substrate." [BSPO:curators] synonym: "cranial" RELATED [] synonym: "superior" EXACT [] is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000023 name: apical-basal gradient namespace: spatial def: "Anatomical gradient that is distributed along the apical-basal axis." [BSPO:wd] is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0015002 BSPO:0000014 ! follows_axis apical-basal axis relative to substrate relationship: BSPO:0015002 BSPO:0000014 ! follows_axis apical-basal axis relative to substrate [Term] id: BSPO:0000024 name: proximal-distal gradient namespace: spatial def: "Anatomical gradient that is distributed along the proximal-distal axis." [BSPO:wd] is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0015002 BSPO:0000015 ! follows_axis proximal-distal axis relationship: BSPO:0015002 BSPO:0000015 ! follows_axis proximal-distal axis [Term] id: BSPO:0000025 name: inferior side namespace: spatial def: "The side that is lower relative to the substrate." [BSPO:curators] synonym: "caudal" RELATED [] synonym: "inferior" EXACT [] is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000026 name: antero-dorsal region namespace: spatial def: "Anatomical region that overlaps the anterior and dorsal regions of a body or body part." [BSPO:wd] synonym: "anterodorsal region " EXACT [] is_a: BSPO:0000071 ! anterior region is_a: BSPO:0000079 ! dorsal region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000063 ! dorsal side created_by: Melissa Haendel creation_date: 2009-06-15T01:01:38Z [Term] id: BSPO:0000027 name: antero-ventral region namespace: spatial def: "Anatomical region that overlaps the anterior and ventral regions of a body or body part." [BSPO:wd] synonym: "anteroventral region " EXACT [] is_a: BSPO:0000071 ! anterior region is_a: BSPO:0000084 ! ventral region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000068 ! ventral side created_by: Melissa Haendel creation_date: 2009-06-15T01:04:59Z [Term] id: BSPO:0000028 name: postero-lateral region namespace: spatial def: "Anatomical region that overlaps the posterior and lateral regions of the body or body part." [BSPO:wd] synonym: "posterolateral region" EXACT [] is_a: BSPO:0000072 ! posterior region is_a: BSPO:0000082 ! lateral region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000066 ! lateral side created_by: Melissa Haendel creation_date: 2009-06-15T01:06:01Z [Term] id: BSPO:0000029 name: antero-lateral region namespace: spatial def: "Anatomical region that overlaps the anterior and lateral regions of a body or body part." [BSPO:wd] synonym: "anterolateral region" EXACT [] is_a: BSPO:0000071 ! anterior region is_a: BSPO:0000082 ! lateral region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000066 ! lateral side created_by: Melissa Haendel creation_date: 2009-06-15T01:07:18Z [Term] id: BSPO:0000030 name: postero-dorsal region namespace: spatial def: "Anatomical region that overlaps the posterior and dorsal regions of the body or body part." [BSPO:wd] synonym: "posterodorsal region" EXACT [] is_a: BSPO:0000072 ! posterior region is_a: BSPO:0000079 ! dorsal region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000063 ! dorsal side created_by: Melissa Haendel creation_date: 2009-06-15T01:08:13Z [Term] id: BSPO:0000031 name: upper region namespace: spatial is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000001 ! upper side relationship: overlaps BSPO:0000001 ! upper side [Term] id: BSPO:0000032 name: lower region namespace: spatial is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000002 ! lower side relationship: overlaps BSPO:0000002 ! lower side [Term] id: BSPO:0000033 name: deep region namespace: spatial def: "Anatomical region located deep within an organism or structure." [BSPO:wd] is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000003 ! deep side relationship: overlaps BSPO:0000003 ! deep side [Term] id: BSPO:0000034 name: superficial region namespace: spatial def: "Anatomical region superficially located on the body or body part." [BSPO:wd] is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000004 ! superficial side relationship: overlaps BSPO:0000004 ! superficial side [Term] id: BSPO:0000035 name: postero-ventral region namespace: spatial def: "Anatomical region that overlaps the posterior and ventral regions of a body or body part." [BSPO:wd] synonym: "posteroventral region" EXACT [] is_a: BSPO:0000072 ! posterior region is_a: BSPO:0000084 ! ventral region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000068 ! ventral side created_by: Melissa Haendel creation_date: 2009-06-15T01:08:38Z [Term] id: BSPO:0000036 name: anterior-most region namespace: spatial synonym: "anterior-most" EXACT [] synonym: "anteriormost" EXACT [] is_a: BSPO:0000071 ! anterior region created_by: Melissa Haendel creation_date: 2009-06-16T08:49:03Z [Term] id: BSPO:0000037 name: posterior-most region namespace: spatial synonym: "posterior-most" EXACT [] synonym: "posteriormost" EXACT [] is_a: BSPO:0000072 ! posterior region created_by: Melissa Haendel creation_date: 2009-06-16T08:49:50Z [Term] id: BSPO:0000038 name: dorsal-most region namespace: spatial synonym: "dorsal-most" EXACT [] synonym: "dorsalmost" EXACT [] is_a: BSPO:0000079 ! dorsal region created_by: Melissa Haendel creation_date: 2009-06-16T08:50:26Z [Term] id: BSPO:0000039 name: ventral-most region namespace: spatial synonym: "ventral-most" EXACT [] synonym: "ventralmost" EXACT [] is_a: BSPO:0000084 ! ventral region created_by: Melissa Haendel creation_date: 2009-06-16T08:51:07Z [Term] id: BSPO:0000040 name: upper/lower compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0015003 BSPO:0000011 ! has_axis upper-lower axis relationship: BSPO:0015003 BSPO:0000011 ! has_axis upper-lower axis [Term] id: BSPO:0000041 name: deep/superficial compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0015003 BSPO:0000012 ! has_axis deep-superficial axis relationship: BSPO:0015003 BSPO:0000012 ! has_axis deep-superficial axis [Term] id: BSPO:0000042 name: antero-medial margin namespace: spatial def: "Anatomical margin that is located on the antero-medial region of the body or body part." [BSPO:wd] synonym: "anteromedial margin" EXACT [] is_a: BSPO:0000050 ! antero-medial region is_a: BSPO:0000671 ! anterior margin is_a: BSPO:0000683 ! medial margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000067 ! medial side created_by: Melissa Haendel creation_date: 2009-09-10T08:49:57Z [Term] id: BSPO:0000043 name: apical/basal compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0015003 BSPO:0000014 ! has_axis apical-basal axis relative to substrate relationship: BSPO:0015003 BSPO:0000014 ! has_axis apical-basal axis relative to substrate [Term] id: BSPO:0000044 name: proximal/distal compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0015003 BSPO:0000015 ! has_axis proximal-distal axis relationship: BSPO:0015003 BSPO:0000015 ! has_axis proximal-distal axis [Term] id: BSPO:0000045 name: antero-lateral margin namespace: spatial def: "Anatomical margin that is located on the antero-lateral region of the body or body part." [BSPO:wd] synonym: "anterolateral margin" EXACT [] is_a: BSPO:0000029 ! antero-lateral region is_a: BSPO:0000671 ! anterior margin is_a: BSPO:0000682 ! lateral margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000066 ! lateral side created_by: Melissa Haendel creation_date: 2009-09-10T08:50:37Z [Term] id: BSPO:0000046 name: postero-medial margin namespace: spatial def: "Anatomical margin that is located on the postero-medial region of the body or body part." [BSPO:wd] synonym: "posteromedial margin" EXACT [] is_a: BSPO:0000064 ! postero-medial region is_a: BSPO:0000672 ! posterior margin is_a: BSPO:0000683 ! medial margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000067 ! medial side created_by: Melissa Haendel creation_date: 2009-09-10T08:51:07Z [Term] id: BSPO:0000047 name: postero-lateral margin namespace: spatial def: "Anatomical margin that is located on the postero-lateral region of the body or body part." [BSPO:wd] synonym: "posterolateral margin" EXACT [] is_a: BSPO:0000028 ! postero-lateral region is_a: BSPO:0000672 ! posterior margin is_a: BSPO:0000682 ! lateral margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000066 ! lateral side created_by: Melissa Haendel creation_date: 2009-09-10T08:51:42Z [Term] id: BSPO:0000048 name: dorso-medial margin namespace: spatial def: "Anatomical margin that is located on the dorso-medial region of the body or body part." [BSPO:wd] synonym: "dorso-medial margin" EXACT [] is_a: BSPO:0000069 ! dorso-medial region is_a: BSPO:0000679 ! dorsal margin is_a: BSPO:0000683 ! medial margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000063 ! dorsal side intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000067 ! medial side created_by: Melissa Haendel creation_date: 2009-09-10T08:52:04Z [Term] id: BSPO:0000049 name: ventro-medial margin namespace: spatial def: "Anatomical margin that is located on the ventro-medial region of the body or body part." [BSPO:wd] synonym: "ventromedial margin" EXACT [] is_a: BSPO:0000112 ! ventro-medial region is_a: BSPO:0000683 ! medial margin is_a: BSPO:0000684 ! ventral margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000067 ! medial side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000068 ! ventral side created_by: Melissa Haendel creation_date: 2009-09-10T08:52:48Z [Term] id: BSPO:0000050 name: antero-medial region namespace: spatial def: "Anatomical region that overlaps the anterior and medial regions of the body or body part." [BSPO:wd] synonym: "anteromedial region" EXACT [] is_a: BSPO:0000071 ! anterior region is_a: BSPO:0000083 ! medial region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000067 ! medial side created_by: Melissa Haendel creation_date: 2009-09-10T08:55:32Z [Term] id: BSPO:0000051 name: anatomical gradient namespace: spatial def: "Material anatomical entity defined by change in the value of some quantity per unit of distance across some spatial axis." [BSPO:cjm] xref: FBql:00005254 is_a: CARO:0000006 ! material anatomical entity [Term] id: BSPO:0000052 name: anterior-posterior gradient namespace: spatial def: "Anatomical gradient that is distributed along the anterior-posterior axis." [BSPO:wd] xref: FBcv:0000142 xref: FBql:00005256 is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0015003 BSPO:0000013 ! has_axis anterior-posterior axis relationship: BSPO:0015003 BSPO:0000013 ! has_axis anterior-posterior axis [Term] id: BSPO:0000053 name: dorsal-ventral gradient namespace: spatial def: "Anatomical gradient that is distributed along the dorsal-ventral axis." [BSPO:wd] xref: FBcv:0000143 xref: FBql:00005255 is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0015003 BSPO:0000016 ! has_axis dorsal-ventral axis relationship: BSPO:0015003 BSPO:0000016 ! has_axis dorsal-ventral axis [Term] id: BSPO:0000054 name: anatomical side namespace: spatial def: "An anatomical region bounded by a plane perpendicular to an axis through the middle." [BSPO:cjm] xref: FBql:00005841 is_a: BSPO:0000070 ! anatomical region [Term] id: BSPO:0000055 name: anterior side namespace: spatial def: "An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW] synonym: "anterior" EXACT [] synonym: "rostral" EXACT [] xref: FBcv:0000053 xref: FBql:00005848 is_a: BSPO:0000054 ! anatomical side is_a: BSPO:0000072 ! posterior region relationship: BSPO:0000096 BSPO:0000056 ! anterior_to posterior side relationship: BSPO:0000113 BSPO:0000056 ! opposite_to posterior side relationship: BSPO:0015007 BSPO:0000013 ! starts_axis anterior-posterior axis [Term] id: BSPO:0000056 name: posterior side namespace: spatial def: "An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW, BSPO:wd] synonym: "caudal" NARROW vertebrate [] synonym: "posterior" EXACT [] xref: FBcv:0000065 xref: FBql:00005849 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000099 BSPO:0000055 ! posterior_to anterior side relationship: BSPO:0015001 BSPO:0000013 ! finishes_axis anterior-posterior axis [Term] id: BSPO:0000057 name: apical side namespace: spatial def: "Anatomical side that is located on the apical end of an organism or structure." [BSPO:wd] synonym: "apical" EXACT [] xref: FBcv:0000054 xref: FBql:00005854 is_a: BSPO:0000054 ! anatomical side is_a: BSPO:0000074 ! basal region relationship: BSPO:0000113 BSPO:0000058 ! opposite_to basal side relationship: BSPO:0015007 BSPO:0000014 ! starts_axis apical-basal axis relative to substrate [Term] id: BSPO:0000058 name: basal side namespace: spatial def: "Anatomical side that is located on the basal end of an organism or structure." [BSPO:wd] comment: The part of the organism attached to a substrate. Axis of symmetry. synonym: "basal" EXACT [] xref: FBcv:0000055 xref: FBql:00005855 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0015001 BSPO:0000014 ! finishes_axis apical-basal axis relative to substrate [Term] id: BSPO:0000059 name: central side namespace: spatial def: "Anatomical side that is centrally located on an organism or structure." [BSPO:wd] comment: central is not an axis direction synonym: "central" EXACT [] xref: FBcv:0000056 xref: FBql:00015851 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000060 name: contralateral side namespace: spatial def: "On the opposite side." [BSPO:cjm] comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. synonym: "contralateral" EXACT [] xref: FBcv:0000057 xref: FBql:00005851 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000061 name: proximal side namespace: spatial synonym: "proximal" EXACT [] xref: FBcv:0000066 xref: FBql:00005852 is_a: BSPO:0000054 ! anatomical side is_a: BSPO:0000078 ! distal region relationship: BSPO:0000113 BSPO:0000062 ! opposite_to distal side relationship: BSPO:0015007 BSPO:0000015 ! starts_axis proximal-distal axis [Term] id: BSPO:0000062 name: distal side namespace: spatial def: "Anatomical side that is distally located on an organism or structure." [BSPO:wd] synonym: "distal" EXACT [] xref: FBcv:0000058 xref: FBql:00005853 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000097 BSPO:0000061 ! distal_to proximal side relationship: BSPO:0015001 BSPO:0000015 ! finishes_axis proximal-distal axis [Term] id: BSPO:0000063 name: dorsal side namespace: spatial def: "An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane." [BSPO:wd] synonym: "dorsal" EXACT [] xref: FBcv:0000059 xref: FBql:00005842 is_a: BSPO:0000054 ! anatomical side is_a: BSPO:0000084 ! ventral region relationship: BSPO:0000098 BSPO:0000066 ! dorsal_to lateral side relationship: BSPO:0000113 BSPO:0000068 ! opposite_to ventral side relationship: BSPO:0015007 BSPO:0000016 ! starts_axis dorsal-ventral axis [Term] id: BSPO:0000064 name: postero-medial region namespace: spatial def: "Anatomical region that overlaps the posterior and medial regions of the body or body part." [BSPO:wd] synonym: "posteromedial region" EXACT [] is_a: BSPO:0000072 ! posterior region is_a: BSPO:0000083 ! medial region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000067 ! medial side created_by: Melissa Haendel creation_date: 2009-09-10T08:56:39Z [Term] id: BSPO:0000065 name: ipsilateral side namespace: spatial def: "On the same side" [BSPO:cjm] comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. synonym: "ipsilateral" EXACT [] xref: FBcv:0000062 xref: FBql:00005850 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000066 name: lateral side namespace: spatial synonym: "lateral" EXACT [] xref: FBcv:0000063 xref: FBql:00005844 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000067 name: medial side namespace: spatial comment: a point in the centre of the organism (where the left-right axis intersects the midsagittal plane) synonym: "medial" EXACT [] xref: FBcv:0000064 xref: FBql:00005847 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000068 name: ventral side namespace: spatial def: "An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." [BSPO:RW, BSPO:wd] synonym: "ventral" EXACT [] xref: FBcv:0000070 xref: FBql:00005843 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0015001 BSPO:0000016 ! finishes_axis dorsal-ventral axis [Term] id: BSPO:0000069 name: dorso-medial region namespace: spatial def: "Anatomical region that overlaps the dorsal and medial regions of the body or body part." [BSPO:wd] synonym: "dorsomedial region" EXACT [] is_a: BSPO:0000079 ! dorsal region is_a: BSPO:0000083 ! medial region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000063 ! dorsal side intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000067 ! medial side created_by: Melissa Haendel creation_date: 2009-09-10T08:57:22Z [Term] id: BSPO:0000070 name: anatomical region namespace: spatial def: "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." [BSPO:cjm] comment: to be merged into CARO xref: FBql:00005841 is_a: CARO:0000003 ! anatomical structure [Term] id: BSPO:0000071 name: anterior region namespace: spatial def: "Anatomical region anteriorly located on the body or body part." [BSPO:wd] xref: FBql:00005848 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000055 ! anterior side [Term] id: BSPO:0000072 name: posterior region namespace: spatial def: "Anatomical region posteriorly located on the body or body part." [BSPO:wd] xref: FBql:00005849 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000056 ! posterior side [Term] id: BSPO:0000073 name: apical region namespace: spatial def: "Anatomical region located on the apical end on the body or body part." [BSPO:wd] xref: FBql:00005854 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000057 ! apical side relationship: overlaps BSPO:0000057 ! apical side [Term] id: BSPO:0000074 name: basal region namespace: spatial def: "Anatomical region located basally on the body or body part." [BSPO:wd] xref: FBql:00005855 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000058 ! basal side relationship: overlaps BSPO:0000058 ! basal side [Term] id: BSPO:0000075 name: central region namespace: spatial def: "Anatomical region centrally located on the body or body part." [BSPO:wd] xref: FBql:00015851 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000059 ! central side relationship: overlaps BSPO:0000059 ! central side [Term] id: BSPO:0000076 name: contralateral region namespace: spatial comment: inherited from flybase cv. not clear how this would be used xref: FBql:00005851 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000060 ! contralateral side relationship: overlaps BSPO:0000060 ! contralateral side [Term] id: BSPO:0000077 name: proximal region namespace: spatial def: "Anatomical region proximally located on the body or body part." [BSPO:wd] xref: FBql:00005852 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000061 ! proximal side relationship: overlaps BSPO:0000061 ! proximal side [Term] id: BSPO:0000078 name: distal region namespace: spatial def: "Anatomical region distally located on the body or body part." [BSPO:wd] xref: FBql:00005853 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000062 ! distal side relationship: overlaps BSPO:0000062 ! distal side [Term] id: BSPO:0000079 name: dorsal region namespace: spatial def: "Anatomical region dorsally located on the body or body part." [BSPO:wd] xref: FBql:00005842 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000080 name: dorso-lateral region namespace: spatial def: "Anatomical region that overlaps the dorsal and lateral regions of a body or body part." [BSPO:wd] synonym: "dorsolateral region" EXACT [] xref: FBql:00005845 is_a: BSPO:0000079 ! dorsal region is_a: BSPO:0000082 ! lateral region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000063 ! dorsal side intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000081 name: ipsilateral region namespace: spatial xref: FBql:00005850 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000065 ! ipsilateral side relationship: overlaps BSPO:0000065 ! ipsilateral side [Term] id: BSPO:0000082 name: lateral region namespace: spatial def: "Anatomical region laterally located on the body or body part." [BSPO:wd] xref: FBql:00005844 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000083 name: medial region namespace: spatial def: "Anatomical region medially located on the body or body part." [BSPO:wd] xref: FBql:00005847 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000067 ! medial side [Term] id: BSPO:0000084 name: ventral region namespace: spatial def: "Anatomical region ventrally located on the body or body part." [BSPO:wd] xref: FBql:00005843 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000085 name: ventro-lateral region namespace: spatial def: "Anatomical region that overlaps the ventral and lateral regions of a body or body part." [BSPO:wd] comment: This is an example of a composition of two axis positions. synonym: "ventrolateral region" EXACT [] xref: FBql:00005846 is_a: BSPO:0000082 ! lateral region is_a: BSPO:0000084 ! ventral region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000066 ! lateral side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000086 name: anatomical compartment namespace: spatial comment: to be merged into CARO xref: FBql:00005873 xref: FMA:9647 is_a: CARO:0000003 ! anatomical structure [Term] id: BSPO:0000087 name: anterior compartment namespace: spatial xref: FBcv:0000031 xref: FBql:00005874 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000088 name: compartment boundary namespace: spatial xref: FBcv:0000032 xref: FBql:00005878 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000089 name: dorsal compartment namespace: spatial xref: FBcv:0000035 xref: FBql:00005876 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000090 name: posterior compartment namespace: spatial xref: FBcv:0000036 xref: FBql:00005875 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000091 name: ventral compartment namespace: spatial xref: FBcv:0000037 xref: FBql:00005877 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000092 name: anatomical compartment boundary namespace: spatial comment: to be merged into CARO xref: FBql:00005881 is_a: CARO:0000010 ! anatomical boundary [Term] id: BSPO:0000093 name: anterior/posterior compartment boundary namespace: spatial xref: FBcv:0000033 xref: FBql:00005880 is_a: BSPO:0000092 ! anatomical compartment boundary [Term] id: BSPO:0000094 name: dorsal/ventral compartment boundary namespace: spatial xref: FBcv:0000034 xref: FBql:00005879 is_a: BSPO:0000092 ! anatomical compartment boundary [Term] id: BSPO:0000112 name: ventro-medial region namespace: spatial def: "The region corresponding to the ventral region of the entity, towards the midline." [BSPO:wd] synonym: "medioventral region" EXACT [] synonym: "ventromedial region" EXACT [] is_a: BSPO:0000083 ! medial region is_a: BSPO:0000084 ! ventral region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000067 ! medial side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000068 ! ventral side created_by: Melissa Haendel creation_date: 2009-09-10T08:57:54Z [Term] id: BSPO:0000127 name: peripheral region namespace: spatial def: "Anatomical region peripherally located on the body or body part." [BSPO:wd] is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000129 ! peripheral side relationship: overlaps BSPO:0000129 ! peripheral side [Term] id: BSPO:0000128 name: axial region namespace: spatial is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000130 ! axial side relationship: overlaps BSPO:0000130 ! axial side [Term] id: BSPO:0000129 name: peripheral side namespace: spatial is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000130 name: axial side namespace: spatial is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000195 name: adaxial-abaxial axis namespace: spatial def: "An anatomical axis that extends from the side of the anatomical entity that is closer to an axis (adaxial) to the side that is further from the same axis (abaxial)." [BSPO:RW] synonym: "AA axis" EXACT [] synonym: "dorsal-ventral axis" RELATED [] is_a: BSPO:0000010 ! anatomical axis created_by: wasila.dahdul creation_date: 2013-07-02T11:20:29Z [Term] id: BSPO:0000196 name: medial-external axis namespace: spatial def: "An anatomical axis that extends from the center of the body outwards or externally." [BSPO:curators] comment: The medial-external axis could apply to a sphere-shaped body. synonym: "proximal-distal axis" RELATED [] is_a: BSPO:0000010 ! anatomical axis created_by: wasila.dahdul creation_date: 2013-07-02T11:21:42Z [Term] id: BSPO:0000197 name: medial-radial axis namespace: spatial def: "An anatomical axis that is perpendicular to an apical/basal axis or proximal/distal axis and extends from the center of an axis (shoot axis or root in the case of plants) to any point on the exterior of the axis." [BSPO:curators] comment: In plants, lateral growth (http://purl.obolibrary.org/obo/GO_0080190) run is along the medial/radial axis (from medial to radial) [RW]. Also applies to radially symmetrical animals such as sea urchins, cnidarians [PM] or applies to more-or-less cylindrical body parts in animals, like limbs. synonym: "M-R axis" EXACT [] synonym: "MR axis" EXACT [] is_a: BSPO:0000196 ! medial-external axis created_by: wasila.dahdul creation_date: 2013-07-02T11:23:31Z [Term] id: BSPO:0000198 name: oral-aboral axis namespace: spatial def: "An axis that extends from the oral opening to the furthest point in an organism that is directly opposite." [BSPO:PM] is_a: BSPO:0000010 ! anatomical axis created_by: wasila.dahdul creation_date: 2013-07-02T11:29:33Z [Term] id: BSPO:0000199 name: animal-vegetal axis namespace: spatial def: "An axis that extends from the animal end of an egg or early embryo to the opposite, vegetal end. In animals with yolk-bearing eggs, the vegetal end is the yolk bearing pole. (pertains to animals only - both vertebrate and invertebrate embryos)." [BSPO:PM] synonym: "A-V axis" EXACT [] synonym: "animal/vegetal axis" EXACT [] synonym: "AV axis" EXACT [] is_a: BSPO:0000010 ! anatomical axis created_by: wasila.dahdul creation_date: 2013-07-02T11:30:13Z [Term] id: BSPO:0000200 name: apical-basal axis relative to direction of growth namespace: spatial def: "An axis of a plant structure that is determined by the direction of apical growth, either by an apical meristem or an apical cell. Apical is toward the direction of apical growth: toward the tip of a growing shoot axis, root, thallus, or non-vascular leaf. Basal is away from the direction of apical growth: toward the root-shoot junction in the case of the primary root or stem, toward the primary root or stem for higher order roots or branches, toward the point of attachment for non-vascular leaves, and toward the original point of growth (as determined in the embryo) for thalli." [BSPO:RW] comment: Plant structures that do not grow from an apical meristem, such as vascular leaves or petals, should be described using the proximal-distal axis. The proximal-distal axis may also be used for branches or lateral roots, and, in those cases, is concordant with the apical-basal axis. is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000201 name: tangential plane namespace: spatial def: "Anatomical plane that is perpendicular to a radial plane." [BSPO:wd] comment: Need to add logical definitions. is_a: BSPO:0000400 ! anatomical plane created_by: wasila.dahdul creation_date: 2014-01-22T15:34:31Z [Term] id: BSPO:0000202 name: radial plane namespace: spatial def: "Anatomical plane that follows the two dimensions specified by an apical-basal axis relative to direction of growth and a medial-lateral axis." [BSPO:wd] comment: Need to add logical definitions. is_a: BSPO:0000400 ! anatomical plane created_by: wasila.dahdul creation_date: 2014-01-22T15:34:02Z [Term] id: BSPO:0000371 name: anterior surface namespace: spatial def: "Anatomical surface that is located on the anterior side of the body or body part." [BSPO:wd] xref: FBql:00005848 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000055 ! surface_of anterior side relationship: BSPO:0015008 BSPO:0000055 ! surface_of anterior side [Term] id: BSPO:0000372 name: posterior surface namespace: spatial def: "Anatomical surface that is located on the posterior side of the body or body part." [BSPO:wd] xref: FBql:00005849 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000056 ! surface_of posterior side relationship: BSPO:0015008 BSPO:0000056 ! surface_of posterior side [Term] id: BSPO:0000373 name: apical surface namespace: spatial def: "Anatomical surface that is located on the apical side of the body or body part." [BSPO:wd] xref: FBql:00005854 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000057 ! surface_of apical side relationship: BSPO:0015008 BSPO:0000057 ! surface_of apical side [Term] id: BSPO:0000374 name: basal surface namespace: spatial def: "Anatomical surface that is located on the basal side of the body or body part." [BSPO:wd] xref: FBql:00005855 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000058 ! surface_of basal side relationship: BSPO:0015008 BSPO:0000058 ! surface_of basal side [Term] id: BSPO:0000376 name: contralateral surface namespace: spatial xref: FBql:00005851 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000060 ! surface_of contralateral side relationship: BSPO:0015008 BSPO:0000060 ! surface_of contralateral side [Term] id: BSPO:0000377 name: proximal surface namespace: spatial def: "Anatomical surface that is located on the proximal side of the body or body part." [BSPO:wd] xref: FBql:00005852 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000061 ! surface_of proximal side relationship: BSPO:0015008 BSPO:0000061 ! surface_of proximal side [Term] id: BSPO:0000378 name: distal surface namespace: spatial def: "Anatomical surface that is located on the distal side of the body or body part." [BSPO:wd] xref: FBql:00005853 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000062 ! surface_of distal side relationship: BSPO:0015008 BSPO:0000062 ! surface_of distal side [Term] id: BSPO:0000379 name: dorsal surface namespace: spatial def: "Anatomical surface that located on the dorsal side of the body or body part." [BSPO:wd] xref: FBql:00005842 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000063 ! surface_of dorsal side relationship: BSPO:0015008 BSPO:0000063 ! surface_of dorsal side [Term] id: BSPO:0000381 name: ipsilateral surface namespace: spatial def: "Anatomical surface that is located on the same side of an organism or structure." [BSPO:wd] xref: FBql:00005850 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000065 ! surface_of ipsilateral side relationship: BSPO:0015008 BSPO:0000065 ! surface_of ipsilateral side [Term] id: BSPO:0000382 name: lateral surface namespace: spatial def: "Anatomical surface that located on the lateral side of the body or body part." [BSPO:wd] xref: FBql:00005844 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000066 ! surface_of lateral side relationship: BSPO:0015008 BSPO:0000066 ! surface_of lateral side [Term] id: BSPO:0000383 name: medial surface namespace: spatial def: "Anatomical surface that located on the medial side of the body or body part." [BSPO:wd] xref: FBql:00005847 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000067 ! surface_of medial side relationship: BSPO:0015008 BSPO:0000067 ! surface_of medial side [Term] id: BSPO:0000384 name: ventral surface namespace: spatial def: "Anatomical surface that is located on the ventral side of the body or body part." [BSPO:wd] xref: FBql:00005843 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0015008 BSPO:0000068 ! surface_of ventral side relationship: BSPO:0015008 BSPO:0000068 ! surface_of ventral side [Term] id: BSPO:0000400 name: anatomical plane namespace: spatial def: "A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions." [BSPO:cjm] comment: These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical. synonym: "anatomical cross-section" EXACT [] synonym: "anatomical section" EXACT [] synonym: "cross-section" RELATED [] synonym: "plane" EXACT [] synonym: "section" EXACT [] xref: FMA:242982 is_a: CARO:0000010 ! anatomical boundary [Term] id: BSPO:0000417 name: sagittal plane namespace: spatial def: "Anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size." [BSPO:cjm, BSPO:DOS, BSPO:mah] synonym: "left/right plane" EXACT [] synonym: "median plane" EXACT [] synonym: "sagittal section" EXACT [] xref: FMA:11361 is_a: BSPO:0000010 ! anatomical axis is_a: BSPO:0000400 ! anatomical plane intersection_of: BSPO:0000400 ! anatomical plane intersection_of: BSPO:0015005 BSPO:0000017 ! orthogonal_to left-right axis intersection_of: parallel_to BSPO:0000013 ! anterior-posterior axis intersection_of: parallel_to BSPO:0000016 ! dorsal-ventral axis relationship: BSPO:0015005 BSPO:0000017 ! orthogonal_to left-right axis relationship: parallel_to BSPO:0000013 ! anterior-posterior axis relationship: parallel_to BSPO:0000016 ! dorsal-ventral axis [Term] id: BSPO:0000671 name: anterior margin namespace: spatial def: "Anatomical margin that is located on the anterior side of a body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000071 ! anterior region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000055 ! anterior side [Term] id: BSPO:0000672 name: posterior margin namespace: spatial def: "Anatomical margin that is located on the posterior side of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000072 ! posterior region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000056 ! posterior side [Term] id: BSPO:0000673 name: apical margin namespace: spatial def: "Anatomical margin that is located on the apical side of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000073 ! apical region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000057 ! apical side relationship: overlaps BSPO:0000057 ! apical side [Term] id: BSPO:0000674 name: basal margin namespace: spatial def: "Anatomical margin that is located on the basal side of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000074 ! basal region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000058 ! basal side relationship: overlaps BSPO:0000058 ! basal side [Term] id: BSPO:0000677 name: proximal margin namespace: spatial def: "Anatomical margin that is located on the proximal region of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000077 ! proximal region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000061 ! proximal side relationship: overlaps BSPO:0000061 ! proximal side [Term] id: BSPO:0000678 name: distal margin namespace: spatial def: "Anatomical margin that is located on the distal side of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000078 ! distal region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000062 ! distal side relationship: overlaps BSPO:0000062 ! distal side [Term] id: BSPO:0000679 name: dorsal margin namespace: spatial def: "Anatomical margin that is located on the dorsal side of body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000079 ! dorsal region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000680 name: dorso-lateral margin namespace: spatial def: "Anatomical margin that is located on the dorso-lateral region of the body or body part." [BSPO:wd] synonym: "dorsolateral margin" EXACT [] is_a: BSPO:0000080 ! dorso-lateral region is_a: BSPO:0000679 ! dorsal margin is_a: BSPO:0000682 ! lateral margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000063 ! dorsal side intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000682 name: lateral margin namespace: spatial def: "Anatomical margin that is located on the lateral side of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000082 ! lateral region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000683 name: medial margin namespace: spatial def: "Anatomical margin that is located on the medial side of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000083 ! medial region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000067 ! medial side relationship: overlaps BSPO:0000067 ! medial side [Term] id: BSPO:0000684 name: ventral margin namespace: spatial def: "Anatomical margin that is located on the ventral side of the body or body part." [BSPO:wd] is_a: BSPO:0000006 ! anatomical margin is_a: BSPO:0000084 ! ventral region intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000685 name: ventro-lateral margin namespace: spatial def: "Anatomical margin that is located on the ventro-lateral region of the body or body part." [BSPO:wd] comment: This is an example of a composition of two axis positions synonym: "ventrolateral margin" EXACT [] is_a: BSPO:0000085 ! ventro-lateral region is_a: BSPO:0000682 ! lateral margin is_a: BSPO:0000684 ! ventral margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000066 ! lateral side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000066 ! lateral side relationship: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000686 name: antero-dorsal margin namespace: spatial def: "Anatomical margin that is located on the antero-dorso region of the body or body part." [BSPO:wd] synonym: "anterodorsal margin" EXACT [] is_a: BSPO:0000026 ! antero-dorsal region is_a: BSPO:0000671 ! anterior margin is_a: BSPO:0000679 ! dorsal margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000687 name: postero-dorsal margin namespace: spatial def: "Anatomical margin that is located on the postero-dorsal region of the body or body part." [BSPO:wd] synonym: "posterodorsal margin" EXACT [] is_a: BSPO:0000030 ! postero-dorsal region is_a: BSPO:0000672 ! posterior margin is_a: BSPO:0000679 ! dorsal margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000063 ! dorsal side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000688 name: antero-ventral margin namespace: spatial def: "Anatomical margin that is located on the antero-ventral region of the body or body part." [BSPO:wd] synonym: "anteroventral margin" EXACT [] is_a: BSPO:0000027 ! antero-ventral region is_a: BSPO:0000671 ! anterior margin is_a: BSPO:0000684 ! ventral margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000055 ! anterior side relationship: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000689 name: postero-ventral margin namespace: spatial def: "Anatomical margin that is located on the postero-ventral region of the body or body part." [BSPO:wd] synonym: "posteroventral margin" EXACT [] is_a: BSPO:0000035 ! postero-ventral region is_a: BSPO:0000672 ! posterior margin is_a: BSPO:0000684 ! ventral margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000068 ! ventral side relationship: overlaps BSPO:0000056 ! posterior side relationship: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0001001 name: medial-lateral axis namespace: spatial def: "An axis that extends from the center of organism to one or other side." [BSPO:cjm] comment: Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart. synonym: "M-L axis" EXACT [] synonym: "medio-lateral axis" EXACT [] synonym: "mediolateral axis" EXACT [] synonym: "ML axis" EXACT [] synonym: "proximal-distal axis " RELATED [] xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG is_a: BSPO:0000196 ! medial-external axis [Term] id: CARO:0000000 name: anatomical entity namespace: spatial def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH] [Term] id: CARO:0000003 name: anatomical structure namespace: spatial def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CC:DOS] is_a: CARO:0000006 ! material anatomical entity [Term] id: CARO:0000006 name: material anatomical entity namespace: spatial def: "An anatomical entity that has mass." [CC:DOS] is_a: CARO:0000000 ! anatomical entity [Term] id: CARO:0000007 name: immaterial anatomical entity namespace: spatial def: "An anatomical entity that has no mass." [CC:DOS] is_a: CARO:0000000 ! anatomical entity [Term] id: CARO:0000008 name: anatomical line namespace: spatial def: "A one dimensional, immaterial anatomical entity." [CC:DOS] is_a: CARO:0000007 ! immaterial anatomical entity [Term] id: CARO:0000010 name: anatomical boundary namespace: spatial def: "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." [CC:DOS] is_a: CARO:0000007 ! immaterial anatomical entity [Term] id: CHEBI:23367 name: molecular entity is_a: CHEBI:24431 ! chemical entity [Term] id: CHEBI:24431 name: chemical entity [Term] id: CHEBI:33579 name: main group molecular entity is_a: CHEBI:23367 ! molecular entity [Term] id: CHEBI:33582 name: carbon group molecular entity is_a: CHEBI:33675 ! p-block molecular entity [Term] id: CHEBI:33675 name: p-block molecular entity is_a: CHEBI:33579 ! main group molecular entity [Term] id: CHEBI:33694 name: biomacromolecule is_a: CHEBI:33839 ! macromolecule is_a: CHEBI:50860 ! organic molecular entity [Term] id: CHEBI:33695 name: information biomacromolecule is_a: CHEBI:33694 ! biomacromolecule [Term] id: CHEBI:33839 name: macromolecule is_a: CHEBI:36357 ! polyatomic entity [Term] id: CHEBI:36080 name: protein is_a: CHEBI:33695 ! information biomacromolecule [Term] id: CHEBI:36357 name: polyatomic entity is_a: CHEBI:23367 ! molecular entity [Term] id: CHEBI:50860 name: organic molecular entity is_a: CHEBI:33582 ! carbon group molecular entity [Term] id: CL:0000000 name: cell is_a: GO:0005575 ! cellular_component equivalent_to: GO:0005623 ! cell [Term] id: CL:0000003 name: native cell is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell [Term] id: CL:0000006 name: neuronal receptor cell is_a: CL:0000101 ! sensory neuron is_a: CL:0000197 ! receptor cell intersection_of: CL:0000197 ! receptor cell intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0050906 relationship: capable_of GO:0050906 [Term] id: CL:0000007 name: early embryonic cell is_a: CL:0002321 ! embryonic cell [Term] id: CL:0000031 name: neuroblast is_a: CL:0000047 ! neuronal stem cell is_a: CL:0000055 ! non-terminally differentiated cell [Term] id: CL:0000034 name: stem cell is_a: CL:0011115 ! precursor cell intersection_of: CL:0000003 ! native cell intersection_of: capable_of GO:0017145 relationship: capable_of GO:0017145 relationship: capable_of GO:0030154 [Term] id: CL:0000047 name: neuronal stem cell is_a: CL:0000048 ! multi fate stem cell is_a: CL:0002319 ! neural cell intersection_of: CL:0000048 ! multi fate stem cell intersection_of: part_of UBERON:0001017 ! central nervous system relationship: develops_from CL:0000133 ! neurectodermal cell relationship: part_of UBERON:0001017 ! central nervous system [Term] id: CL:0000048 name: multi fate stem cell is_a: CL:0000034 ! stem cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0002371 ! somatic cell intersection_of: bearer_of PATO:0001402 intersection_of: capable_of GO:0017145 relationship: bearer_of PATO:0001402 relationship: capable_of GO:0017145 [Term] id: CL:0000055 name: non-terminally differentiated cell is_a: CL:0011115 ! precursor cell relationship: capable_of GO:0030154 [Term] id: CL:0000056 name: myoblast is_a: CL:0000680 ! muscle precursor cell [Term] id: CL:0000064 name: ciliated cell is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: has_plasma_membrane_part GO:0005929 ! cilium relationship: has_plasma_membrane_part GO:0005929 ! cilium [Term] id: CL:0000066 name: epithelial cell is_a: CL:0000548 ! animal cell intersection_of: CL:0000548 ! animal cell intersection_of: part_of UBERON:0000483 ! epithelium relationship: part_of UBERON:0000483 ! epithelium [Term] id: CL:0000067 name: ciliated epithelial cell is_a: CL:0000064 ! ciliated cell is_a: CL:0000075 ! columnar/cuboidal epithelial cell intersection_of: CL:0000075 ! columnar/cuboidal epithelial cell intersection_of: has_plasma_membrane_part GO:0005929 ! cilium relationship: has_plasma_membrane_part GO:0005929 ! cilium [Term] id: CL:0000075 name: columnar/cuboidal epithelial cell is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell [Term] id: CL:0000098 name: sensory epithelial cell is_a: BFO:0000004 is_a: BFO:0000040 is_a: CL:0000066 ! epithelial cell is_a: CL:0000197 ! receptor cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000066 ! epithelial cell intersection_of: capable_of GO:0050906 relationship: capable_of GO:0050906 [Term] id: CL:0000101 name: sensory neuron is_a: CL:0000526 ! afferent neuron intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0050906 relationship: capable_of GO:0050906 [Term] id: CL:0000133 name: neurectodermal cell is_a: CL:0000221 ! ectodermal cell [Term] id: CL:0000134 name: mesenchymal stem cell is_a: CL:0000048 ! multi fate stem cell is_a: CL:0000219 ! motile cell is_a: CL:0002320 ! connective tissue cell intersection_of: CL:0002320 ! connective tissue cell intersection_of: capable_of GO:0001649 intersection_of: capable_of GO:0016477 intersection_of: capable_of GO:0030182 intersection_of: capable_of GO:0030855 intersection_of: capable_of GO:0045444 intersection_of: capable_of GO:0055007 intersection_of: capable_of GO:0060591 intersection_of: has_plasma_membrane_part PR:000001345 intersection_of: has_plasma_membrane_part PR:000001800 intersection_of: has_plasma_membrane_part PR:000001843 intersection_of: lacks_plasma_membrane_part GO:0042613 intersection_of: lacks_plasma_membrane_part PR:000001003 intersection_of: lacks_plasma_membrane_part PR:000001006 relationship: capable_of GO:0001649 relationship: capable_of GO:0016477 relationship: capable_of GO:0030182 relationship: capable_of GO:0030855 relationship: capable_of GO:0045444 relationship: capable_of GO:0055007 relationship: capable_of GO:0060591 relationship: has_plasma_membrane_part PR:000001345 relationship: has_plasma_membrane_part PR:000001800 relationship: has_plasma_membrane_part PR:000001843 relationship: lacks_plasma_membrane_part GO:0042613 relationship: lacks_plasma_membrane_part PR:000001003 relationship: lacks_plasma_membrane_part PR:000001006 [Term] id: CL:0000183 name: contractile cell is_a: CL:0000003 ! native cell [Term] id: CL:0000187 name: muscle cell is_a: BFO:0000004 is_a: CL:0000183 ! contractile cell is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell relationship: develops_from CL:0000056 ! myoblast [Term] id: CL:0000197 name: receptor cell is_a: CL:0000003 ! native cell [Term] id: CL:0000199 name: mechanoreceptor cell is_a: CL:0000101 ! sensory neuron intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0050974 relationship: capable_of GO:0050974 [Term] id: CL:0000210 name: photoreceptor cell is_a: CL:0000006 ! neuronal receptor cell intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0050962 relationship: capable_of GO:0050962 [Term] id: CL:0000211 name: electrically active cell is_a: CL:0000003 ! native cell [Term] id: CL:0000219 name: motile cell is_a: BFO:0000004 is_a: BFO:0000040 is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: capable_of GO:0048870 relationship: capable_of GO:0048870 [Term] id: CL:0000221 name: ectodermal cell is_a: BFO:0000004 is_a: CL:0002321 ! embryonic cell relationship: part_of UBERON:0000924 ! ectoderm [Term] id: CL:0000222 name: mesodermal cell is_a: BFO:0000004 is_a: CL:0002321 ! embryonic cell relationship: part_of UBERON:0000926 ! mesoderm [Term] id: CL:0000225 name: anucleate cell is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: bearer_of PATO:0001405 relationship: bearer_of PATO:0001405 [Term] id: CL:0000255 name: eukaryotic cell is_a: CL:0000003 ! native cell [Term] id: CL:0000353 name: blastoderm cell is_a: CL:0000007 ! early embryonic cell [Term] id: CL:0000393 name: electrically responsive cell is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000404 name: electrically signaling cell is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000526 name: afferent neuron is_a: CL:0000540 ! neuron [Term] id: CL:0000540 name: neuron is_a: BFO:0000004 is_a: BFO:0000040 is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000404 ! electrically signaling cell is_a: CL:0002319 ! neural cell relationship: capable_of GO:0019226 relationship: develops_from CL:0000031 ! neuroblast [Term] id: CL:0000548 name: animal cell is_a: CL:0000255 ! eukaryotic cell relationship: has_part GO:0005902 [Term] id: CL:0000680 name: muscle precursor cell is_a: CL:0000055 ! non-terminally differentiated cell is_a: CL:0002371 ! somatic cell intersection_of: GO:0005623 ! cell intersection_of: develops_into CL:0000187 ! muscle cell relationship: develops_from CL:0000222 ! mesodermal cell relationship: develops_into CL:0000187 ! muscle cell [Term] id: CL:0000710 name: neurecto-epithelial cell is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0002077 ! ecto-epithelial cell intersection_of: CL:0002077 ! ecto-epithelial cell intersection_of: develops_from CL:0000133 ! neurectodermal cell relationship: develops_from CL:0000133 ! neurectodermal cell [Term] id: CL:0002077 name: ecto-epithelial cell is_a: BFO:0000004 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000066 ! epithelial cell intersection_of: develops_from CL:0000221 ! ectodermal cell relationship: develops_from CL:0000221 ! ectodermal cell [Term] id: CL:0002078 name: meso-epithelial cell is_a: BFO:0000004 is_a: CL:0000066 ! epithelial cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000066 ! epithelial cell intersection_of: develops_from CL:0000222 ! mesodermal cell relationship: develops_from CL:0000222 ! mesodermal cell [Term] id: CL:0002242 name: nucleate cell is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: has_part GO:0005634 relationship: has_part GO:0005634 [Term] id: CL:0002319 name: neural cell is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: CL:0002320 name: connective tissue cell is_a: CL:0000548 ! animal cell is_a: CL:0002371 ! somatic cell intersection_of: CL:0002371 ! somatic cell intersection_of: part_of UBERON:0002384 relationship: part_of UBERON:0002384 [Term] id: CL:0002321 name: embryonic cell is_a: CL:0000548 ! animal cell [Term] id: CL:0002371 name: somatic cell is_a: CL:0000003 ! native cell [Term] id: CL:0011115 name: precursor cell is_a: BFO:0000004 is_a: BFO:0000040 is_a: CL:0000003 ! native cell intersection_of: CL:0000003 ! native cell intersection_of: capable_of GO:0030154 relationship: capable_of GO:0030154 [Term] id: CL:2000029 name: central nervous system neuron is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron intersection_of: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001017 ! central nervous system [Term] id: CTENO:0000001 name: ctene plate def: "A collection of cilia attached to basal cushions and made up of polster cells. A characteristic feature of ctenophores" [] comment: The move- ment of the ctene plates are controlled by the apical organ, a sensory structure containing a statocyst located at the aboral pole (Tamm, 1982, for review) synonym: "comb plate" RELATED [] synonym: "ctene" BROAD [] is_a: UBERON:0000062 ! organ relationship: capable_of_part_of GO:0040011 ! locomotion relationship: part_of CTENO:0000137 ! ctene row relationship: RO:0002254 CTENO:0000099 ! e1 micromere relationship: RO:0002254 CTENO:0000103 ! m12 micromere relationship: RO:0002473 GO:0005929 ! cilium property_value: UBPROP:0000008 "lost in Platyctenida" xsd:string [Term] id: CTENO:0000002 name: outer epidermis is_a: UBERON:0000483 ! epithelium [Term] id: CTENO:0000003 name: gastrodermis is_a: UBERON:0000483 ! epithelium property_value: seeAlso https://en.wikipedia.org/wiki/Gastrodermis xsd:anyURI [Term] id: CTENO:0000004 name: mesoglea def: "A thick jelly-like layer between the epidermis and gastrodermis. The mesoglea is mostly acellular and composed of extracellular matrix, but it also has some muscle and mesenchymal cells." [] is_a: UBERON:0000479 ! tissue relationship: has_part CL:0000134 ! mesenchymal stem cell relationship: has_part CL:0000187 ! muscle cell property_value: seeAlso https://en.wikipedia.org/wiki/Mesoglea xsd:anyURI [Term] id: CTENO:0000005 name: comb plate cilium is_a: GO:0005929 ! cilium intersection_of: GO:0005929 ! cilium intersection_of: part_of CTENO:0000001 ! ctene plate relationship: part_of CTENO:0000001 ! ctene plate [Term] id: CTENO:0000006 name: sensory cell cilium is_a: GO:0005929 ! cilium [Term] id: CTENO:0000007 name: tentacle sheath cilium is_a: GO:0005929 ! cilium [Term] id: CTENO:0000008 name: polar field cilium is_a: GO:0005929 ! cilium intersection_of: GO:0005929 ! cilium intersection_of: part_of CTENO:0000145 ! polar field relationship: part_of CTENO:0000145 ! polar field [Term] id: CTENO:0000009 name: auricular cilium is_a: GO:0005929 ! cilium [Term] id: CTENO:0000010 name: pharyngeal cilium is_a: GO:0005929 ! cilium [Term] id: CTENO:0000011 name: good groove cilium is_a: GO:0005929 ! cilium [Term] id: CTENO:0000012 name: balancer cilium is_a: CTENO:0000006 ! sensory cell cilium intersection_of: GO:0005929 ! cilium intersection_of: part_of CTENO:0000057 ! balancer cell relationship: part_of CTENO:0000057 ! balancer cell [Term] id: CTENO:0000013 name: dome cilium comment: The statocyst is protected by a transparent dome made of long, immobile cilia. is_a: GO:0005929 ! cilium relationship: part_of CTENO:0000017 ! apical sense organ [Term] id: CTENO:0000014 name: aboral groove cilium is_a: GO:0005929 ! cilium [Term] id: CTENO:0000015 name: extracellular matrix of mesoglea synonym: "mesogleal extracellular matrix" EXACT [] is_a: GO:0031012 ! extracellular matrix intersection_of: GO:0031012 ! extracellular matrix intersection_of: part_of CTENO:0000004 ! mesoglea relationship: part_of CTENO:0000004 ! mesoglea [Term] id: CTENO:0000016 name: polster cell is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell [Term] id: CTENO:0000017 name: apical sense organ synonym: "aboral organ" RELATED [] synonym: "apical organ" RELATED [] is_a: UBERON:0000062 ! organ relationship: part_of CTENO:0000151 ! aboral part of organism relationship: part_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0001032 ! sensory system [Term] id: CTENO:0000018 name: tentacle comment: Most ctenophores also bear two muscular tentacles which are used for prey capture, and ultrastruc- tural studies have shown that these structures are distinct from cnidarian tentacles (Hernandez-Nicaise, 1991) is_a: UBERON:0000026 ! appendage property_value: UBPROP:0000008 "absent in beroids" xsd:string [Term] id: CTENO:0000019 name: photocyte def: "Light-producing cell present in nearly all ctenophores" [] is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell relationship: develops_from CTENO:0000067 ! 2M macromere [Term] id: CTENO:0000020 name: colloblast def: "A specialized adhesive cell found in ctenophores" [] is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell relationship: develops_from CTENO:0000104 ! e2 micromere relationship: part_of CTENO:0000018 ! tentacle property_value: seeAlso https://en.wikipedia.org/wiki/Colloblast xsd:anyURI [Term] id: CTENO:0000021 name: oral lobe def: "A conspicuous lobed structure used for feeding, characteristic of the Lobata (\"sea walnuts\")" [] is_a: UBERON:0000062 ! organ [Term] id: CTENO:0000022 name: adult ctenophore is_a: UBERON:0007023 ! adult organism intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002491 CTENO:0000025 ! ctenophore adult stage relationship: RO:0002491 CTENO:0000025 ! ctenophore adult stage relationship: SIO:000658 CTENO:0000023 ! cydippid larva property_value: UBPROP:0000008 "Pleurobrachia species maintain cydippid forms as adults, but the others become radically different: M. leidyi greatly reduce their tentacles and form large oral lobes; B. ovata lack tentacles and form large oral lips that they use to engulf or nip at other ctenophores; and platyctenes become compressed in the oral-aboral direction and adopt a sessile or creeping lifestyle, crawling around the substratum rather than locomoting by beating their ctene rows." xsd:string {http://purl.obolibrary.org/obo/core#source="doi:10.1101/pdb.emo106"} [Term] id: CTENO:0000023 name: cydippid larva def: "A ctenophore larva" [] is_a: UBERON:0002548 ! larva intersection_of: UBERON:0000468 ! multicellular organism intersection_of: RO:0002491 CTENO:0000024 ! cydippid stage relationship: RO:0002491 CTENO:0000024 ! cydippid stage [Term] id: CTENO:0000024 name: cydippid stage is_a: UBERON:0000069 ! larval stage [Term] id: CTENO:0000025 name: ctenophore adult stage is_a: UBERON:0000066 ! fully formed stage [Term] id: CTENO:0000026 name: meridional canal def: "A canal that is associated with a testis and an ovary" [] {http://purl.obolibrary.org/obo/core#source="doi:10.1101/pdb.emo106"} is_a: UBERON:0004111 ! anatomical conduit [Term] id: CTENO:0000027 name: nurse cell comment: connected to the oocyte by cytoplasmic bridges that transport cytoplasm and yolk to the oocyte (Dunlap Pianka 1974) is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell property_value: UBPROP:0000008 "In Bolinopsis microptera each oocyte is associated with as many as 100 nurse cells." xsd:string [Term] id: CTENO:0000028 name: ectoplasm is_a: GO:0044444 ! cytoplasmic part [Term] id: CTENO:0000029 name: endoplasm is_a: GO:0005575 ! cellular_component [Term] id: CTENO:0000030 name: subcortical plasm is_a: GO:0005575 ! cellular_component relationship: RO:0002220 CTENO:0000028 ! adjacent_to ectoplasm relationship: RO:0002220 CTENO:0000029 ! adjacent_to endoplasm [Term] id: CTENO:0000031 name: periodic acid Schiff positive yolk particles is_a: GO:0005575 ! cellular_component [Term] id: CTENO:0000032 name: gonadopore is_a: UBERON:0000161 ! orifice [Term] id: CTENO:0000033 name: anal pore is_a: UBERON:0000161 ! orifice relationship: part_of CTENO:0000142 ! backslash quadrant relationship: part_of CTENO:0000151 ! aboral part of organism [Term] id: CTENO:0000034 name: ctenophore anal canal is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: RO:0002176 CTENO:0000033 ! anal pore relationship: develops_from CTENO:0000067 ! 2M macromere relationship: part_of CTENO:0000142 ! backslash quadrant relationship: RO:0002176 CTENO:0000033 ! anal pore [Term] id: CTENO:0000035 name: epitheliomuscular cell comment: To be ceded to cnidarian anatomy ontology is_a: CL:0000066 ! epithelial cell [Term] id: CTENO:0000036 name: parietal muscle def: "Ribbon-shaped smooth muscle that resides between the glandular epithelial cells and the basal lamina" [] is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0002416 ! integumental system [Term] id: CTENO:0000037 name: giant smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue [Term] id: CTENO:0000038 name: mesogleal muscle is_a: CTENO:0000037 ! giant smooth muscle intersection_of: UBERON:0002385 ! muscle tissue intersection_of: part_of CTENO:0000004 ! mesoglea relationship: part_of CTENO:0000004 ! mesoglea [Term] id: CTENO:0000039 name: longitudinal mesogleal muscle is_a: CTENO:0000038 ! mesogleal muscle [Term] id: CTENO:0000040 name: circumferential mesogleal muscle is_a: CTENO:0000038 ! mesogleal muscle [Term] id: CTENO:0000041 name: radial mesogleal muscle is_a: CTENO:0000038 ! mesogleal muscle [Term] id: CTENO:0000042 name: tentacular muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of CTENO:0000018 ! tentacle relationship: part_of CTENO:0000018 ! tentacle property_value: editor_notes "Within the tentacles themselves are mesogleal muscles that are constantly being produced from cells at the base of the tentacle. We need to distinguish between muscles that are part of the tentacle proper and the mesogleal component (see mesogleal muscles)" xsd:string [Term] id: CTENO:0000043 name: trans-tentacular muscle def: "A muscle that connects the two tentacle apparatuses" [] is_a: UBERON:0014892 ! skeletal muscle organ [Term] id: CTENO:0000044 name: tentilla is_a: UBERON:0000026 ! appendage [Term] id: CTENO:0000045 name: striated muscle of tentilla is_a: UBERON:0002036 ! striated muscle tissue property_value: UBPROP:0000008 "The only description of striated muscle is in the tentilla of Euplokamis (Chun 1880)" xsd:string [Term] id: CTENO:0000046 name: mesogleal nerve fiber comment: cross the basal lamina and run through the mesoglea is_a: UBERON:0006134 ! nerve fiber [Term] id: CTENO:0000047 name: subepidermal nerve net is_a: UBERON:0011216 ! organ system subdivision relationship: has_part CL:0000210 ! photoreceptor cell relationship: has_part CTENO:0000017 ! apical sense organ relationship: part_of UBERON:0001016 ! nervous system property_value: seeAlso https://en.wikipedia.org/wiki/Nerve_net xsd:anyURI [Term] id: CTENO:0000048 name: gastrodermal nerve synonym: "subgastrodermal nerve" EXACT [] is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0001025 CTENO:0000003 ! gastrodermis relationship: RO:0001025 CTENO:0000003 ! gastrodermis relationship: RO:0001025 CTENO:0000026 ! meridional canal relationship: RO:0002134 CTENO:0000019 ! photocyte [Term] id: CTENO:0000049 name: mesoglea of tentacle is_a: CTENO:0000004 ! mesoglea intersection_of: CTENO:0000004 ! mesoglea intersection_of: part_of CTENO:0000018 ! tentacle relationship: part_of CTENO:0000018 ! tentacle [Term] id: CTENO:0000050 name: tastborsten cell comment: characterized by a single thin ciliary projection is_a: CTENO:0000052 ! nerve network cell [Term] id: CTENO:0000051 name: taststiften cell comment: possess one or several short pointed pegs synonym: "hoplocyst" EXACT [] is_a: CTENO:0000052 ! nerve network cell [Term] id: CTENO:0000052 name: nerve network cell is_a: CL:0002319 ! neural cell intersection_of: CL:0000000 ! cell intersection_of: part_of CTENO:0000047 ! subepidermal nerve net relationship: develops_from CTENO:0000100 ! m1 micromere relationship: part_of CTENO:0000047 ! subepidermal nerve net [Term] id: CTENO:0000053 name: nerve fiber of mesoglea of tentacle is_a: CTENO:0000046 ! mesogleal nerve fiber [Term] id: CTENO:0000054 name: oral pole is_a: UBERON:0000475 ! organism subdivision [Term] id: CTENO:0000055 name: apical organ floor comment: Genes: MlIslet is_a: UBERON:0000483 ! epithelium relationship: has_part CTENO:0000012 ! balancer cilium relationship: part_of CTENO:0000017 ! apical sense organ relationship: RO:0002254 CTENO:0000099 ! e1 micromere [Term] id: CTENO:0000056 name: lithocyte def: "A mineralized cell generated and constantly replaced in the floor of the apical organ. They are supported on top of the balancing cilia that make up the gravity-sensing statocyst of the apical organ." [] comment: control the posture of the animal is_a: CL:0002319 ! neural cell relationship: part_of CTENO:0000017 ! apical sense organ relationship: RO:0002207 CTENO:0000134 ! lithocyte progenitor [Term] id: CTENO:0000057 name: balancer cell is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0000199 ! mechanoreceptor cell is_a: CL:0000710 ! neurecto-epithelial cell intersection_of: CL:0000000 ! cell intersection_of: has_part CTENO:0000012 ! balancer cilium relationship: has_part CTENO:0000012 ! balancer cilium relationship: part_of CTENO:0000055 ! apical organ floor [Term] id: CTENO:0000058 name: apical organ statolith comment: covered by a dome of nonmotile cilia is_a: UBERON:0006582 ! statolith intersection_of: UBERON:0006582 ! statolith intersection_of: part_of CTENO:0000017 ! apical sense organ relationship: part_of CTENO:0000017 ! apical sense organ [Term] id: CTENO:0000059 name: tentacular nerve is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: RO:0002176 CTENO:0000017 ! apical sense organ intersection_of: RO:0002176 CTENO:0000018 ! tentacle relationship: RO:0002176 CTENO:0000017 ! apical sense organ relationship: RO:0002176 CTENO:0000018 ! tentacle [Term] id: CTENO:0000060 name: epithelial papilla is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0000199 ! mechanoreceptor cell is_a: CL:0000710 ! neurecto-epithelial cell relationship: part_of CTENO:0000017 ! apical sense organ [Term] id: CTENO:0000061 name: photoprotein comment: emits light in the presence of calcium ions (Ward and Seliger 1974). synonym: "mnemiopsin" RELATED [] is_a: CHEBI:36080 ! protein [Term] id: CTENO:0000062 name: quadrant def: "One of of four nearly identical quadrants organized along the oral-aboral axis. Each of the four quadrants is derived largely from one cell of the four-cell-stage embryo. At the eight-cell stage each quadrant contains a single E (\"end\") and M (\"middle\") blastomere. Subsequently, micromeres are formed first at the aboral pole and later at the oral pole." [] {http://purl.obolibrary.org/obo/core#source="PMID:10525332"} comment: Two orthogonal planes run along the oral–aboral axis which define four quadrants (Fig. is_a: UBERON:0000475 ! organism subdivision relationship: RO:0002220 CTENO:0000135 ! adjacent_to adesophageal plane relationship: RO:0002220 CTENO:0000140 ! adjacent_to tentacular plane [Term] id: CTENO:0000063 name: ctenophore blastomere is_a: CL:0000353 ! blastoderm cell [Term] id: CTENO:0000064 name: E macromere, 8 cell stage is_a: CTENO:0000082 ! macromere, 8 cell stage [Term] id: CTENO:0000065 name: M blastomere is_a: CTENO:0000082 ! macromere, 8 cell stage [Term] id: CTENO:0000066 name: micromere is_a: CTENO:0000063 ! ctenophore blastomere relationship: RO:0002496 UBERON:0007236 ! 8 cell stage [Term] id: CTENO:0000067 name: 2M macromere is_a: CTENO:0000087 ! macromere, 32 cell stage and above intersection_of: CTENO:0000087 ! macromere, 32 cell stage and above intersection_of: RO:0002207 CTENO:0000076 ! 1M macromere, 16 cell stage relationship: RO:0002207 CTENO:0000076 ! 1M macromere, 16 cell stage [Term] id: CTENO:0000068 name: 3E macromere is_a: CTENO:0000088 ! macromere, 60 cell stage [Term] id: CTENO:0000069 name: circumpharyngeal muscle cell is_a: CL:0000187 ! muscle cell relationship: develops_from CTENO:0000092 ! 2M-slash macromere [Term] id: CTENO:0000070 name: EM macromere, 4 cell stage is_a: CTENO:0000075 ! macromere intersection_of: CTENO:0000075 ! macromere intersection_of: RO:0002491 UBERON:0007233 ! 4 cell stage relationship: RO:0002491 UBERON:0007233 ! 4 cell stage [Term] id: CTENO:0000071 name: EM-slash blastomere is_a: CTENO:0000070 ! EM macromere, 4 cell stage [Term] id: CTENO:0000072 name: EM-backslash blastomere is_a: CTENO:0000070 ! EM macromere, 4 cell stage [Term] id: CTENO:0000073 name: M-slash blastomere is_a: CTENO:0000065 ! M blastomere intersection_of: CTENO:0000065 ! M blastomere intersection_of: develops_from CTENO:0000071 ! EM-slash blastomere relationship: develops_from CTENO:0000071 ! EM-slash blastomere [Term] id: CTENO:0000074 name: M-blackslash blastomere is_a: CTENO:0000065 ! M blastomere intersection_of: CTENO:0000065 ! M blastomere intersection_of: develops_from CTENO:0000072 ! EM-backslash blastomere relationship: develops_from CTENO:0000072 ! EM-backslash blastomere [Term] id: CTENO:0000075 name: macromere is_a: CTENO:0000063 ! ctenophore blastomere [Term] id: CTENO:0000076 name: 1M macromere, 16 cell stage is_a: CTENO:0000085 ! macromere, 16 cell stage intersection_of: CTENO:0000085 ! macromere, 16 cell stage intersection_of: RO:0002207 CTENO:0000081 ! M macromere, 8 cell stage relationship: RO:0002207 CTENO:0000081 ! M macromere, 8 cell stage [Term] id: CTENO:0000078 name: 2E macromere, 32 cell stage is_a: CTENO:0000087 ! macromere, 32 cell stage and above intersection_of: CTENO:0000087 ! macromere, 32 cell stage and above intersection_of: RO:0002207 CTENO:0000086 ! 1E macromere, 16 cell stage relationship: RO:0002207 CTENO:0000086 ! 1E macromere, 16 cell stage [Term] id: CTENO:0000079 name: 3M macromere is_a: CTENO:0000088 ! macromere, 60 cell stage [Term] id: CTENO:0000081 name: M macromere, 8 cell stage is_a: CTENO:0000082 ! macromere, 8 cell stage [Term] id: CTENO:0000082 name: macromere, 8 cell stage is_a: CTENO:0000075 ! macromere intersection_of: CTENO:0000075 ! macromere intersection_of: CTENO:0000075 ! macromere intersection_of: RO:0002207 CTENO:0000070 ! EM macromere, 4 cell stage intersection_of: RO:0002491 UBERON:0007236 ! 8 cell stage relationship: RO:0002207 CTENO:0000070 ! EM macromere, 4 cell stage relationship: RO:0002491 UBERON:0007236 ! 8 cell stage [Term] id: CTENO:0000083 name: M-backslash macromere is_a: CTENO:0000081 ! M macromere, 8 cell stage intersection_of: CTENO:0000081 ! M macromere, 8 cell stage intersection_of: RO:0002207 CTENO:0000072 ! EM-backslash blastomere relationship: RO:0002207 CTENO:0000072 ! EM-backslash blastomere [Term] id: CTENO:0000084 name: M-slash macromere is_a: CTENO:0000081 ! M macromere, 8 cell stage intersection_of: CTENO:0000081 ! M macromere, 8 cell stage intersection_of: RO:0002207 CTENO:0000071 ! EM-slash blastomere relationship: RO:0002207 CTENO:0000071 ! EM-slash blastomere [Term] id: CTENO:0000085 name: macromere, 16 cell stage is_a: CTENO:0000075 ! macromere intersection_of: CTENO:0000075 ! macromere intersection_of: CTENO:0000075 ! macromere intersection_of: RO:0002207 CTENO:0000082 ! macromere, 8 cell stage intersection_of: RO:0002491 CTENO:0000116 ! ctenophore 16 cell stage relationship: RO:0002207 CTENO:0000082 ! macromere, 8 cell stage relationship: RO:0002491 CTENO:0000116 ! ctenophore 16 cell stage [Term] id: CTENO:0000086 name: 1E macromere, 16 cell stage is_a: CTENO:0000085 ! macromere, 16 cell stage intersection_of: CTENO:0000085 ! macromere, 16 cell stage intersection_of: RO:0002207 CTENO:0000064 ! E macromere, 8 cell stage relationship: RO:0002207 CTENO:0000064 ! E macromere, 8 cell stage [Term] id: CTENO:0000087 name: macromere, 32 cell stage and above comment: 32 cell stage refers to time of birth. 2M cells persist is_a: CTENO:0000075 ! macromere intersection_of: CTENO:0000075 ! macromere intersection_of: RO:0002491 CTENO:0000117 ! ctenophore 32 cell stage relationship: RO:0002491 CTENO:0000117 ! ctenophore 32 cell stage [Term] id: CTENO:0000088 name: macromere, 60 cell stage comment: 2M cells persist is_a: CTENO:0000075 ! macromere intersection_of: CTENO:0000075 ! macromere intersection_of: RO:0002491 CTENO:0000118 ! ctenophore 60 cell stage relationship: RO:0002491 CTENO:0000118 ! ctenophore 60 cell stage [Term] id: CTENO:0000090 name: 1M-backslash macromere, 16 cell stage is_a: CTENO:0000076 ! 1M macromere, 16 cell stage intersection_of: CTENO:0000076 ! 1M macromere, 16 cell stage intersection_of: RO:0002207 CTENO:0000083 ! M-backslash macromere relationship: RO:0002207 CTENO:0000083 ! M-backslash macromere [Term] id: CTENO:0000091 name: 1M-slash macromere, 16 cell stage is_a: CTENO:0000076 ! 1M macromere, 16 cell stage intersection_of: CTENO:0000076 ! 1M macromere, 16 cell stage intersection_of: RO:0002207 CTENO:0000073 ! M-slash blastomere relationship: RO:0002207 CTENO:0000073 ! M-slash blastomere [Term] id: CTENO:0000092 name: 2M-slash macromere is_a: CTENO:0000067 ! 2M macromere intersection_of: CTENO:0000067 ! 2M macromere intersection_of: RO:0002207 CTENO:0000091 ! 1M-slash macromere, 16 cell stage relationship: RO:0002207 CTENO:0000091 ! 1M-slash macromere, 16 cell stage [Term] id: CTENO:0000093 name: 2M-backslash macromere is_a: CTENO:0000067 ! 2M macromere intersection_of: CTENO:0000067 ! 2M macromere intersection_of: RO:0002207 CTENO:0000090 ! 1M-backslash macromere, 16 cell stage relationship: RO:0002207 CTENO:0000090 ! 1M-backslash macromere, 16 cell stage [Term] id: CTENO:0000094 name: 3M-slash macromere, 60 cell stage is_a: CTENO:0000079 ! 3M macromere [Term] id: CTENO:0000095 name: 3M-backslash macromere, 30 cell stage is_a: CTENO:0000079 ! 3M macromere [Term] id: CTENO:0000096 name: micromere, 16 cell stage is_a: CTENO:0000066 ! micromere intersection_of: CTENO:0000066 ! micromere intersection_of: CTENO:0000066 ! micromere intersection_of: RO:0002207 CTENO:0000082 ! macromere, 8 cell stage intersection_of: RO:0002491 CTENO:0000116 ! ctenophore 16 cell stage relationship: RO:0002207 CTENO:0000082 ! macromere, 8 cell stage relationship: RO:0002491 CTENO:0000116 ! ctenophore 16 cell stage [Term] id: CTENO:0000097 name: micromere, 32 cell stage is_a: CTENO:0000066 ! micromere intersection_of: CTENO:0000066 ! micromere intersection_of: RO:0002491 CTENO:0000117 ! ctenophore 32 cell stage relationship: RO:0002491 CTENO:0000117 ! ctenophore 32 cell stage [Term] id: CTENO:0000098 name: micromere, 60 cell stage is_a: CTENO:0000066 ! micromere intersection_of: CTENO:0000066 ! micromere intersection_of: RO:0002491 CTENO:0000118 ! ctenophore 60 cell stage relationship: RO:0002207 CTENO:0000102 ! m11 micromere relationship: RO:0002491 CTENO:0000118 ! ctenophore 60 cell stage [Term] id: CTENO:0000099 name: e1 micromere is_a: CTENO:0000096 ! micromere, 16 cell stage intersection_of: CTENO:0000096 ! micromere, 16 cell stage intersection_of: RO:0002207 CTENO:0000064 ! E macromere, 8 cell stage relationship: RO:0002207 CTENO:0000064 ! E macromere, 8 cell stage [Term] id: CTENO:0000100 name: m1 micromere is_a: CTENO:0000096 ! micromere, 16 cell stage intersection_of: CTENO:0000096 ! micromere, 16 cell stage intersection_of: RO:0002207 CTENO:0000081 ! M macromere, 8 cell stage relationship: RO:0002207 CTENO:0000081 ! M macromere, 8 cell stage [Term] id: CTENO:0000101 name: m2 micromere is_a: CTENO:0000097 ! micromere, 32 cell stage intersection_of: CTENO:0000097 ! micromere, 32 cell stage intersection_of: RO:0002207 CTENO:0000076 ! 1M macromere, 16 cell stage relationship: RO:0002207 CTENO:0000076 ! 1M macromere, 16 cell stage [Term] id: CTENO:0000102 name: m11 micromere is_a: CTENO:0000097 ! micromere, 32 cell stage relationship: RO:0002207 CTENO:0000100 ! m1 micromere [Term] id: CTENO:0000103 name: m12 micromere is_a: CTENO:0000097 ! micromere, 32 cell stage relationship: RO:0002207 CTENO:0000100 ! m1 micromere [Term] id: CTENO:0000104 name: e2 micromere is_a: CTENO:0000097 ! micromere, 32 cell stage intersection_of: CTENO:0000097 ! micromere, 32 cell stage intersection_of: RO:0002207 CTENO:0000086 ! 1E macromere, 16 cell stage relationship: RO:0002207 CTENO:0000086 ! 1E macromere, 16 cell stage [Term] id: CTENO:0000105 name: e11 micromere comment: e11 and m11 lie closest to sagittal plane is_a: CTENO:0000097 ! micromere, 32 cell stage relationship: RO:0002207 CTENO:0000099 ! e1 micromere [Term] id: CTENO:0000106 name: e12 micromere is_a: CTENO:0000097 ! micromere, 32 cell stage relationship: RO:0002207 CTENO:0000099 ! e1 micromere [Term] id: CTENO:0000107 name: m21 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage relationship: RO:0002207 CTENO:0000101 ! m2 micromere [Term] id: CTENO:0000108 name: m22 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage relationship: RO:0002207 CTENO:0000101 ! m2 micromere [Term] id: CTENO:0000109 name: m121 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage relationship: RO:0002207 CTENO:0000103 ! m12 micromere [Term] id: CTENO:0000110 name: m122 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage relationship: RO:0002207 CTENO:0000103 ! m12 micromere [Term] id: CTENO:0000111 name: e3 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage intersection_of: CTENO:0000098 ! micromere, 60 cell stage intersection_of: RO:0002207 CTENO:0000078 ! 2E macromere, 32 cell stage relationship: RO:0002207 CTENO:0000078 ! 2E macromere, 32 cell stage [Term] id: CTENO:0000112 name: e22 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage [Term] id: CTENO:0000113 name: e21 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage [Term] id: CTENO:0000114 name: m111 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage [Term] id: CTENO:0000115 name: m112 micromere is_a: CTENO:0000098 ! micromere, 60 cell stage [Term] id: CTENO:0000116 name: ctenophore 16 cell stage is_a: UBERON:0000067 ! embryo stage part relationship: RO:0002087 UBERON:0007236 ! 8 cell stage [Term] id: CTENO:0000117 name: ctenophore 32 cell stage is_a: UBERON:0000067 ! embryo stage part relationship: RO:0002087 CTENO:0000116 ! ctenophore 16 cell stage [Term] id: CTENO:0000118 name: ctenophore 60 cell stage is_a: UBERON:0000067 ! embryo stage part [Term] id: CTENO:0000119 name: micromere, formed during gastulation is_a: CTENO:0000066 ! micromere intersection_of: CTENO:0000066 ! micromere intersection_of: BFO:0000068 UBERON:0000109 ! gastrula stage relationship: BFO:0000068 UBERON:0000109 ! gastrula stage [Term] id: CTENO:0000120 name: tentacle epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of CTENO:0000018 ! tentacle relationship: part_of CTENO:0000018 ! tentacle relationship: RO:0002254 CTENO:0000099 ! e1 micromere [Term] id: CTENO:0000121 name: tentacle sheath is_a: UBERON:0004923 ! organ component layer relationship: part_of CTENO:0000018 ! tentacle [Term] id: CTENO:0000122 name: ctenophore pharynx def: "An ectodermal structure which connects the mouth to the endodermal component of the gut, deep inside the animal" [] is_a: UBERON:0006562 ! pharynx relationship: develops_from CTENO:0000156 ! ctenophore blastopore [Term] id: CTENO:0000123 name: tentacle sheath cell is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell intersection_of: CL:0000000 ! cell intersection_of: part_of CTENO:0000121 ! tentacle sheath relationship: develops_from CTENO:0000099 ! e1 micromere relationship: part_of CTENO:0000121 ! tentacle sheath [Term] id: CTENO:0000124 name: longitudinal mesogleal muscle cell is_a: CL:0000187 ! muscle cell intersection_of: CL:0000000 ! cell intersection_of: part_of CTENO:0000039 ! longitudinal mesogleal muscle relationship: develops_from CTENO:0000068 ! 3E macromere relationship: part_of CTENO:0000039 ! longitudinal mesogleal muscle [Term] id: CTENO:0000125 name: radial mesogleal muscle cell is_a: CL:0000187 ! muscle cell intersection_of: CL:0000000 ! cell intersection_of: part_of CTENO:0000041 ! radial mesogleal muscle relationship: develops_from CTENO:0000068 ! 3E macromere relationship: part_of CTENO:0000041 ! radial mesogleal muscle [Term] id: CTENO:0000126 name: stellate mesenchymal cell def: "A multipolar mesenchymal cell found in the stellate mesenchyme. May be phagocytic. absent in derivatives of 2M? macromeres." [] is_a: CL:0000134 ! mesenchymal stem cell [Term] id: CTENO:0000127 name: tentacle muscle cell is_a: CL:0000187 ! muscle cell intersection_of: CL:0000187 ! muscle cell intersection_of: part_of CTENO:0000018 ! tentacle relationship: part_of CTENO:0000018 ! tentacle [Term] id: CTENO:0000128 name: longitudinal pharyngeal muscle cell is_a: CL:0000187 ! muscle cell relationship: develops_from CTENO:0000068 ! 3E macromere [Term] id: CTENO:0000130 name: trans-tentacular muscle cell is_a: CL:0000187 ! muscle cell intersection_of: CL:0000000 ! cell intersection_of: part_of CTENO:0000043 ! trans-tentacular muscle relationship: develops_from CTENO:0000067 ! 2M macromere relationship: part_of CTENO:0000043 ! trans-tentacular muscle [Term] id: CTENO:0000131 name: apical organ ctene row muscle is_a: CL:0000187 ! muscle cell relationship: develops_from CTENO:0000068 ! 3E macromere [Term] id: CTENO:0000132 name: E-lineage cell is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell intersection_of: CL:0000000 ! cell intersection_of: develops_from CTENO:0000064 ! E macromere, 8 cell stage relationship: develops_from CTENO:0000064 ! E macromere, 8 cell stage [Term] id: CTENO:0000133 name: M-lineage cell is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell intersection_of: CL:0000000 ! cell intersection_of: develops_from CTENO:0000081 ! M macromere, 8 cell stage relationship: develops_from CTENO:0000081 ! M macromere, 8 cell stage [Term] id: CTENO:0000134 name: lithocyte progenitor synonym: "reserve lithocyte" EXACT [] is_a: CL:0000066 ! epithelial cell is_a: CL:0002319 ! neural cell relationship: develops_from CTENO:0000068 ! 3E macromere relationship: part_of CTENO:0000055 ! apical organ floor [Term] id: CTENO:0000135 name: adesophageal plane comment: plane of first cleavage (Freeman 1977) synonym: "esophageal plane" RELATED [] synonym: "sagittal plane" RELATED [] is_a: BSPO:0000400 ! anatomical plane relationship: BSPO:0015005 CTENO:0000140 ! orthogonal_to tentacular plane [Term] id: CTENO:0000136 name: tentacular axis comment: The plane of second cleavage includes the tentacular axis is_a: BSPO:0000010 ! anatomical axis [Term] id: CTENO:0000137 name: ctene row def: "A row that is composed of individual ctene plates, which are arranged in longitudinal rows parallel to the oral–aboral axis" [] synonym: "comb row" EXACT [] is_a: UBERON:0000477 ! anatomical cluster relationship: RO:0002473 CTENO:0000001 ! ctene plate [Term] id: CTENO:0000138 name: apical organ statocyst comment: a balance sensor consisting of a statolith, a solid particle supported on four bundles of cilia, called "balancers", that sense its orientation is_a: UBERON:0006583 ! statocyst intersection_of: UBERON:0006583 ! statocyst intersection_of: part_of CTENO:0000017 ! apical sense organ relationship: has_part CTENO:0000056 ! lithocyte relationship: part_of CTENO:0000017 ! apical sense organ [Term] id: CTENO:0000139 name: ciliated groove def: "A groove that runs along the surface of the animal to each of the eight ctene rows" [] synonym: "ciliated furrow" EXACT [] is_a: UBERON:0006846 ! surface groove relationship: RO:0002150 CTENO:0000137 ! ctene row relationship: RO:0002254 CTENO:0000099 ! e1 micromere [Term] id: CTENO:0000140 name: tentacular plane is_a: BSPO:0000400 ! anatomical plane [Term] id: CTENO:0000141 name: slash quadrant is_a: CTENO:0000062 ! quadrant [Term] id: CTENO:0000142 name: backslash quadrant is_a: CTENO:0000062 ! quadrant [Term] id: CTENO:0000143 name: tentacle bulb is_a: UBERON:0000479 ! tissue relationship: overlaps CTENO:0000140 ! tentacular plane relationship: part_of CTENO:0000152 ! tentacle apparatus relationship: RO:0002254 CTENO:0000099 ! e1 micromere [Term] id: CTENO:0000145 name: polar field def: "an ectodermal structure emanating from the apical organ along the esophageal axis." [] is_a: UBERON:0000475 ! organism subdivision [Term] id: CTENO:0000146 name: polar field cell is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell intersection_of: CL:0000000 ! cell intersection_of: part_of CTENO:0000145 ! polar field relationship: develops_from CTENO:0000102 ! m11 micromere relationship: part_of CTENO:0000145 ! polar field [Term] id: CTENO:0000147 name: esophague-tentacle muscle cell is_a: CL:0000187 ! muscle cell relationship: develops_from CTENO:0000093 ! 2M-backslash macromere [Term] id: CTENO:0000148 name: anal canal cell is_a: CL:0000000 ! cell is_a: GO:0005623 ! cell intersection_of: CL:0000000 ! cell intersection_of: part_of UBERON:0000159 ! anal canal relationship: develops_from CTENO:0000093 ! 2M-backslash macromere relationship: part_of UBERON:0000159 ! anal canal [Term] id: CTENO:0000149 name: tentacle-apical organ muscle cell is_a: CL:0000187 ! muscle cell relationship: develops_from CTENO:0000092 ! 2M-slash macromere [Term] id: CTENO:0000150 name: oral side of organism is_a: UBERON:0000475 ! organism subdivision [Term] id: CTENO:0000151 name: aboral part of organism is_a: UBERON:0000475 ! organism subdivision [Term] id: CTENO:0000152 name: tentacle apparatus is_a: UBERON:0000477 ! anatomical cluster relationship: has_part CTENO:0000018 ! tentacle relationship: has_part CTENO:0000143 ! tentacle bulb [Term] id: CTENO:0000153 name: endodermal canal is_a: UBERON:0004111 ! anatomical conduit [Term] id: CTENO:0000154 name: mixed E and M lineage structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: RO:0002254 CTENO:0000064 ! E macromere, 8 cell stage intersection_of: RO:0002254 CTENO:0000081 ! M macromere, 8 cell stage relationship: RO:0002254 CTENO:0000064 ! E macromere, 8 cell stage relationship: RO:0002254 CTENO:0000081 ! M macromere, 8 cell stage [Term] id: CTENO:0000155 name: pharyngeal muscle is_a: UBERON:0001630 ! muscle organ [Term] id: CTENO:0000156 name: ctenophore blastopore comment: Genes: MlLhx1/5 is_a: UBERON:0000100 ! blastopore [Term] id: GO:0005575 name: cellular_component [Term] id: GO:0005576 name: extracellular region is_a: GO:0005575 ! cellular_component [Term] id: GO:0005622 name: intracellular is_a: GO:0044464 ! cell part [Term] id: GO:0005623 name: cell is_a: GO:0005575 ! cellular_component [Term] id: GO:0005737 name: cytoplasm is_a: GO:0044424 ! intracellular part [Term] id: GO:0005929 name: cilium is_a: GO:0042995 ! cell projection is_a: GO:0043226 ! organelle [Term] id: GO:0008150 name: biological_process [Term] id: GO:0031012 name: extracellular matrix is_a: GO:0044421 ! extracellular region part relationship: part_of GO:0005576 ! extracellular region [Term] id: GO:0032838 name: cell projection cytoplasm is_a: GO:0044463 ! cell projection part is_a: GO:0099568 ! cytoplasmic region intersection_of: GO:0005737 ! cytoplasm intersection_of: part_of GO:0042995 ! cell projection relationship: part_of GO:0042995 ! cell projection [Term] id: GO:0040011 name: locomotion is_a: GO:0008150 ! biological_process [Term] id: GO:0042995 name: cell projection is_a: GO:0044464 ! cell part [Term] id: GO:0043226 name: organelle is_a: GO:0005575 ! cellular_component [Term] id: GO:0043230 name: extracellular organelle is_a: GO:0043226 ! organelle is_a: GO:0044421 ! extracellular region part intersection_of: GO:0043226 ! organelle intersection_of: part_of GO:0005576 ! extracellular region relationship: part_of GO:0005576 ! extracellular region [Term] id: GO:0044420 name: extracellular matrix component is_a: GO:0044421 ! extracellular region part intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0031012 ! extracellular matrix relationship: part_of GO:0031012 ! extracellular matrix [Term] id: GO:0044421 name: extracellular region part is_a: GO:0005575 ! cellular_component intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0005576 ! extracellular region relationship: part_of GO:0005576 ! extracellular region [Term] id: GO:0044422 name: organelle part is_a: GO:0005575 ! cellular_component intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0043226 ! organelle relationship: part_of GO:0043226 ! organelle [Term] id: GO:0044424 name: intracellular part is_a: GO:0044464 ! cell part intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0005622 ! intracellular relationship: part_of GO:0005622 ! intracellular [Term] id: GO:0044441 name: ciliary part is_a: GO:0044422 ! organelle part is_a: GO:0044463 ! cell projection part intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0005929 ! cilium relationship: part_of GO:0005929 ! cilium [Term] id: GO:0044444 name: cytoplasmic part is_a: GO:0044424 ! intracellular part intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0005737 ! cytoplasm relationship: part_of GO:0005737 ! cytoplasm [Term] id: GO:0044463 name: cell projection part is_a: GO:0044464 ! cell part intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0042995 ! cell projection relationship: part_of GO:0042995 ! cell projection [Term] id: GO:0044464 name: cell part is_a: GO:0005575 ! cellular_component intersection_of: GO:0005575 ! cellular_component intersection_of: part_of GO:0005623 ! cell relationship: part_of GO:0005623 ! cell [Term] id: GO:0099568 name: cytoplasmic region is_a: GO:0005737 ! cytoplasm is_a: GO:0044444 ! cytoplasmic part intersection_of: GO:0005737 ! cytoplasm intersection_of: part_of GO:0005737 ! cytoplasm relationship: part_of GO:0005737 ! cytoplasm [Term] id: NCBITaxon:10197 name: Ctenophora synonym: "Coelenterata" RELATED in_part [] synonym: "coelenterates" RELATED common_name [] synonym: "comb jellies" EXACT common_name [] synonym: "ctenophores" RELATED blast_name [] synonym: "sea walnuts" EXACT common_name [] is_a: NCBITaxon:33208 ! Metazoa property_value: has_rank NCBITaxon:phylum [Term] id: NCBITaxon:10199 name: Beroe is_a: NCBITaxon:37539 ! Beroidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:10200 name: Beroe mitrata is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:10201 name: Beroe ovata is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:127144 name: Lampocteis is_a: NCBITaxon:148608 ! Lampoctenidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:127145 name: Lampocteis cruentiventer is_a: NCBITaxon:127144 ! Lampocteis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:12996 name: Cestum is_a: NCBITaxon:27920 ! Cestidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:12997 name: Cestum veneris synonym: "Cestus veneris" RELATED misspelling [] is_a: NCBITaxon:12996 ! Cestum property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:131567 name: cellular organisms synonym: "biota" RELATED synonym [] [Term] id: NCBITaxon:140453 name: Beroe forskalii is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140454 name: Beroe gracilis is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140455 name: Bolinopsis infundibulum is_a: NCBITaxon:51106 ! Bolinopsis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140456 name: Hormiphora plumosa is_a: NCBITaxon:86009 ! Hormiphora property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140457 name: Pleurobrachia pileus is_a: NCBITaxon:34498 ! Pleurobrachia property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140460 name: Mertensiidae is_a: NCBITaxon:50341 ! Cydippida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:140461 name: Charistephane is_a: NCBITaxon:140460 ! Mertensiidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140462 name: Charistephane fugiens is_a: NCBITaxon:140461 ! Charistephane property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140463 name: Callianira is_a: NCBITaxon:140460 ! Mertensiidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140464 name: Callianira cristata is_a: NCBITaxon:140463 ! Callianira property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140465 name: Haeckeliidae is_a: NCBITaxon:50341 ! Cydippida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:140466 name: Aulacoctena is_a: NCBITaxon:140465 ! Haeckeliidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140467 name: Aulacoctena acuminata is_a: NCBITaxon:140466 ! Aulacoctena property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140468 name: Haeckelia is_a: NCBITaxon:140465 ! Haeckeliidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140469 name: Haeckelia beehleri is_a: NCBITaxon:140468 ! Haeckelia property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140470 name: Haeckelia rubra is_a: NCBITaxon:140468 ! Haeckelia property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140471 name: Platyctenida is_a: NCBITaxon:140492 ! Typhlocoela property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:140472 name: Coeloplanidae is_a: NCBITaxon:140471 ! Platyctenida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:140473 name: Coeloplana is_a: NCBITaxon:140472 ! Coeloplanidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140474 name: Coeloplana bannwarthii synonym: "Coeloplana banwarthii" RELATED misspelling [] is_a: NCBITaxon:140473 ! Coeloplana property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140475 name: Leucotheidae is_a: NCBITaxon:27921 ! Lobata property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:140476 name: Leucothea is_a: NCBITaxon:140475 ! Leucotheidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140477 name: Leucothea pulchra is_a: NCBITaxon:140476 ! Leucothea property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140478 name: Ocyropsidae is_a: NCBITaxon:27921 ! Lobata property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:140479 name: Ocyropsis is_a: NCBITaxon:140478 ! Ocyropsidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140480 name: Ocyropsis crystallina is_a: NCBITaxon:140479 ! Ocyropsis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140481 name: Ocyropsis crystallina crystallina is_a: NCBITaxon:140480 ! Ocyropsis crystallina property_value: has_rank NCBITaxon:subspecies [Term] id: NCBITaxon:140482 name: Ocyropsis crystallina guttata is_a: NCBITaxon:140480 ! Ocyropsis crystallina property_value: has_rank NCBITaxon:subspecies [Term] id: NCBITaxon:140483 name: Ocyropsis maculata is_a: NCBITaxon:140479 ! Ocyropsis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140484 name: Thalassocalycida is_a: NCBITaxon:140493 ! Cyclocoela property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:140485 name: Thalassocalycidae is_a: NCBITaxon:140484 ! Thalassocalycida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:140486 name: Thalassocalyce is_a: NCBITaxon:140485 ! Thalassocalycidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140487 name: Thalassocalyce inconstans is_a: NCBITaxon:140486 ! Thalassocalyce property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140488 name: Vallicula is_a: NCBITaxon:140472 ! Coeloplanidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140489 name: Vallicula multiformis synonym: "Vallicula multiformia" RELATED misspelling [] is_a: NCBITaxon:140488 ! Vallicula property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140490 name: Velamen is_a: NCBITaxon:27920 ! Cestidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140491 name: Velamen parallelum is_a: NCBITaxon:140490 ! Velamen property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140492 name: Typhlocoela is_a: NCBITaxon:10197 ! Ctenophora [Term] id: NCBITaxon:140493 name: Cyclocoela is_a: NCBITaxon:10197 ! Ctenophora [Term] id: NCBITaxon:140495 name: Mertensia is_a: NCBITaxon:140460 ! Mertensiidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:140496 name: Mertensia ovum is_a: NCBITaxon:140495 ! Mertensia property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140497 name: Undescribed mertensiid sp. 1 synonym: "Undescribed mertensiid A" RELATED synonym [] synonym: "Undescribed pleurobrachiid A" RELATED synonym [] is_a: NCBITaxon:86008 ! Pleurobrachiidae property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140498 name: Undescribed mertensiid sp. 2 synonym: "Undescribed mertensiid B (At)" RELATED synonym [] is_a: NCBITaxon:488512 ! unclassified Mertensiidae property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140499 name: Undescribed mertensiid sp. 3 synonym: "Undescribed mertensiid C (RTC)" RELATED synonym [] is_a: NCBITaxon:488512 ! unclassified Mertensiidae property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:140500 name: unclassified Lobata is_a: NCBITaxon:27921 ! Lobata [Term] id: NCBITaxon:140501 name: Undescribed Lobata sp. 4 synonym: "Undescribed sp E (Ll)" RELATED synonym [] is_a: NCBITaxon:140500 ! unclassified Lobata property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:148608 name: Lampoctenidae is_a: NCBITaxon:27921 ! Lobata property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:158797 name: Mnemiopsis sp. RFW-2001 is_a: NCBITaxon:27922 ! Mnemiopsis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:168726 name: Coeloplana agniae is_a: NCBITaxon:140473 ! Coeloplana property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:220132 name: Beroe sp. SL-2003 is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:2759 name: Eukaryota synonym: "Eucarya" RELATED synonym [] synonym: "Eucaryotae" RELATED synonym [] synonym: "eucaryotes" EXACT genbank_common_name [] synonym: "Eukarya" RELATED synonym [] synonym: "Eukaryotae" RELATED synonym [] synonym: "eukaryotes" EXACT common_name [] is_a: NCBITaxon:131567 ! cellular organisms property_value: has_rank NCBITaxon:superkingdom [Term] id: NCBITaxon:27919 name: Cestida is_a: NCBITaxon:140493 ! Cyclocoela property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:27920 name: Cestidae is_a: NCBITaxon:27919 ! Cestida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:27921 name: Lobata synonym: "Labata" RELATED synonym [] is_a: NCBITaxon:140493 ! Cyclocoela property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:27922 name: Mnemiopsis is_a: NCBITaxon:51105 ! Bolinopsidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:27923 name: Mnemiopsis leidyi is_a: NCBITaxon:27922 ! Mnemiopsis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:31167 name: Beroe cucumis is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:320166 name: Beroe abyssicola is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:33154 name: Fungi/Metazoa group synonym: "Opisthokonta" RELATED synonym [] synonym: "opisthokonts" RELATED synonym [] is_a: NCBITaxon:2759 ! Eukaryota [Term] id: NCBITaxon:33208 name: Metazoa synonym: "Animalia" RELATED synonym [] synonym: "animals" RELATED blast_name [] synonym: "metazoans" EXACT genbank_common_name [] synonym: "multicellular animals" EXACT common_name [] is_a: NCBITaxon:33154 ! Fungi/Metazoa group property_value: has_rank NCBITaxon:kingdom [Term] id: NCBITaxon:34498 name: Pleurobrachia is_a: NCBITaxon:86008 ! Pleurobrachiidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:34499 name: Pleurobrachia bachei synonym: "Pleurobranchia bachei" RELATED misspelling [] is_a: NCBITaxon:34498 ! Pleurobrachia property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:354105 name: Coeloplana willeyi is_a: NCBITaxon:140473 ! Coeloplana property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:37538 name: Beroida is_a: NCBITaxon:140493 ! Cyclocoela property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:37539 name: Beroidae is_a: NCBITaxon:37538 ! Beroida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:488512 name: unclassified Mertensiidae is_a: NCBITaxon:140460 ! Mertensiidae [Term] id: NCBITaxon:499920 name: Cestum sp. SC-2008 is_a: NCBITaxon:12996 ! Cestum property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:499921 name: Beroe sp. KUR20 is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:499922 name: Beroe sp. KUR21 is_a: NCBITaxon:10199 ! Beroe property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:499923 name: Thalassocalyce sp. KUR22 is_a: NCBITaxon:140486 ! Thalassocalyce property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:499924 name: Thalassocalyce sp. KUR23 is_a: NCBITaxon:140486 ! Thalassocalyce property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:500090 name: unclassified Cydippida is_a: NCBITaxon:50341 ! Cydippida [Term] id: NCBITaxon:500091 name: Cydippida sp. KUR30 is_a: NCBITaxon:500090 ! unclassified Cydippida property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:50341 name: Cydippida is_a: NCBITaxon:140492 ! Typhlocoela property_value: has_rank NCBITaxon:order [Term] id: NCBITaxon:51105 name: Bolinopsidae is_a: NCBITaxon:27921 ! Lobata property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:51106 name: Bolinopsis is_a: NCBITaxon:51105 ! Bolinopsidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:51107 name: Bolinopsis sp. is_a: NCBITaxon:51106 ! Bolinopsis property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:541220 name: Ctenellidae is_a: NCBITaxon:50341 ! Cydippida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:624130 name: Ctenophora environmental sample property_value: has_rank NCBITaxon:species [Term] id: NCBITaxon:86008 name: Pleurobrachiidae is_a: NCBITaxon:50341 ! Cydippida property_value: has_rank NCBITaxon:family [Term] id: NCBITaxon:86009 name: Hormiphora is_a: NCBITaxon:86008 ! Pleurobrachiidae property_value: has_rank NCBITaxon:genus [Term] id: NCBITaxon:86010 name: Hormiphora sp. is_a: NCBITaxon:86009 ! Hormiphora property_value: has_rank NCBITaxon:species [Term] id: UBERON:0000000 name: processual entity [Term] id: UBERON:0000009 name: submucosa is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0000010 name: peripheral nervous system is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000020 name: sense organ is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001032 ! sensory system [Term] id: UBERON:0000025 name: tube is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000026 name: appendage is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000059 name: large intestine is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0004907 ! lower digestive tract [Term] id: UBERON:0000060 name: anatomical wall is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000061 name: anatomical structure is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000062 name: organ is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000467 ! anatomical system [Term] id: UBERON:0000064 name: organ part is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000062 ! organ [Term] id: UBERON:0000066 name: fully formed stage is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0000067 name: embryo stage part is_a: UBERON:0000105 ! life cycle stage intersection_of: UBERON:0000105 ! life cycle stage intersection_of: part_of UBERON:0000068 ! embryo stage relationship: part_of UBERON:0000068 ! embryo stage relationship: RO:0002087 CTENO:0000117 ! ctenophore 32 cell stage [Term] id: UBERON:0000068 name: embryo stage is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000069 name: larval stage is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000092 ! post-embryonic stage [Term] id: UBERON:0000076 name: external ectoderm is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0000092 name: post-embryonic stage is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000100 name: blastopore is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron [Term] id: UBERON:0000104 name: life cycle is_a: UBERON:0000000 ! processual entity [Term] id: UBERON:0000105 name: life cycle stage is_a: UBERON:0000000 ! processual entity relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000107 name: cleavage stage is_a: UBERON:0000067 ! embryo stage part relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000109 name: gastrula stage is_a: UBERON:0000067 ! embryo stage part relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000122 name: neuron projection bundle is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000159 name: anal canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0011272 ! embryonic skin basal layer relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0000160 name: intestine is_a: UBERON:0004921 ! subdivision of digestive tract relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system [Term] id: UBERON:0000161 name: orifice is_a: UBERON:0004111 ! anatomical conduit [Term] id: UBERON:0000307 name: blastula is_a: UBERON:0000922 ! embryo relationship: develops_from UBERON:0007010 ! cleaving embryo [Term] id: UBERON:0000328 name: gut wall is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0000344 name: mucosa is_a: UBERON:0004923 ! organ component layer [Term] id: UBERON:0000383 name: musculature of body is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0000465 name: material anatomical entity is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000467 name: anatomical system is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0000468 name: multicellular organism is_a: UBERON:0010000 ! multicellular anatomical structure [Term] id: UBERON:0000475 name: organism subdivision is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0000476 name: acellular anatomical structure is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000477 name: anatomical cluster is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000479 name: tissue is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0000483 name: epithelium is_a: UBERON:0000479 ! tissue union_of: UBERON:0000486 ! multilaminar epithelium union_of: UBERON:0000490 ! unilaminar epithelium [Term] id: UBERON:0000485 name: simple columnar epithelium is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0012274 ! columnar epithelium [Term] id: UBERON:0000486 name: multilaminar epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000490 name: unilaminar epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000922 name: embryo is_a: UBERON:0000468 ! multicellular organism [Term] id: UBERON:0000923 name: germ layer is_a: UBERON:0010316 ! germ layer / neural crest relationship: develops_from UBERON:0002532 ! epiblast (generic) relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0000924 name: ectoderm is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000926 name: mesoderm is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0001007 name: digestive system is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0001015 name: musculature is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0000383 ! musculature of body [Term] id: UBERON:0001016 name: nervous system is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0001017 name: central nervous system is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001019 name: nerve fasciculus is_a: UBERON:0000122 ! neuron projection bundle [Term] id: UBERON:0001021 name: nerve is_a: UBERON:0000122 ! neuron projection bundle relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0001032 name: sensory system is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0004456 ! entire sense organ system [Term] id: UBERON:0001046 name: hindgut is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0003104 ! mesenchyme [Term] id: UBERON:0001062 name: anatomical entity [Term] id: UBERON:0001135 name: smooth muscle tissue is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0001169 name: wall of large intestine is_a: UBERON:0001262 ! wall of intestine intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine [Term] id: UBERON:0001207 name: mucosa of large intestine is_a: UBERON:0001242 ! intestinal mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001169 ! wall of large intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001208 name: submucosa of large intestine is_a: UBERON:0009566 ! intestinal submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001169 ! wall of large intestine [Term] id: UBERON:0001242 name: intestinal mucosa is_a: UBERON:0004786 ! gastrointestinal system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001262 name: wall of intestine is_a: UBERON:0000328 ! gut wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001277 name: intestinal epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! epithelium of mucosa is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0004808 ! gastrointestinal system epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001278 name: epithelium of large intestine is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001353 name: anal region is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001555 name: digestive tract is_a: UBERON:0000025 ! tube relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0001630 name: muscle organ is_a: CTENO:0000154 ! mixed E and M lineage structure is_a: UBERON:0000062 ! organ is_a: UBERON:0005090 ! muscle structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of CTENO:0000122 ! ctenophore pharynx relationship: part_of CTENO:0000122 ! ctenophore pharynx relationship: part_of UBERON:0001015 ! musculature [Term] id: UBERON:0002036 name: striated muscle tissue is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0002050 name: embryonic structure is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0002072 name: hypodermis is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0002097 name: skin of body is_a: UBERON:0000062 ! organ is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0011272 ! embryonic skin basal layer relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0002199 name: integument is_a: UBERON:0003102 ! surface structure is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0002204 name: musculoskeletal system is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0002329 name: somite is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007503 ! epithelial vesicle is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0003059 ! presomitic mesoderm [Term] id: UBERON:0002385 name: muscle tissue is_a: UBERON:0000479 ! tissue is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0001015 ! musculature [Term] id: UBERON:0002416 name: integumental system is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0002532 name: epiblast (generic) is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0002548 name: larva is_a: UBERON:0000468 ! multicellular organism [Term] id: UBERON:0003059 name: presomitic mesoderm is_a: UBERON:0006598 ! presumptive structure relationship: part_of UBERON:0003077 ! paraxial mesoderm [Term] id: UBERON:0003077 name: paraxial mesoderm is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0015212 ! lateral structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003082 name: myotome is_a: UBERON:0017650 ! developing mesenchymal structure relationship: develops_from UBERON:0002329 ! somite relationship: develops_from UBERON:0004290 ! dermomyotome [Term] id: UBERON:0003102 name: surface structure is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0003104 name: mesenchyme is_a: UBERON:0000479 ! tissue [Term] id: UBERON:0003329 name: submucosa of anal canal is_a: UBERON:0001208 ! submucosa of large intestine is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0003342 name: mucosa of anal canal is_a: UBERON:0001207 ! mucosa of large intestine is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0003350 name: epithelium of mucosa is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000344 ! mucosa relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0003353 name: epithelium of hindgut is_a: UBERON:0003929 ! digestive tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001046 ! hindgut relationship: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0003929 name: digestive tract epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004111 name: anatomical conduit is_a: UBERON:0010000 ! multicellular anatomical structure [Term] id: UBERON:0004120 name: mesoderm-derived structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000926 ! mesoderm relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0004121 name: ectoderm-derived structure is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000924 ! ectoderm relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0004220 name: large intestine smooth muscle is_a: UBERON:0004221 ! intestine smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001169 ! wall of large intestine [Term] id: UBERON:0004221 name: intestine smooth muscle is_a: UBERON:0004226 ! gastrointestinal system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0004226 name: gastrointestinal system smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system [Term] id: UBERON:0004231 name: anal region smooth muscle is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001353 ! anal region relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0004253 name: skin muscle is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002416 ! integumental system relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0004290 name: dermomyotome is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0016888 ! transitional anatomical structure relationship: develops_from UBERON:0002329 ! somite [Term] id: UBERON:0004456 name: entire sense organ system is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0004734 name: gastrula is_a: UBERON:0000922 ! embryo relationship: develops_from UBERON:0000307 ! blastula [Term] id: UBERON:0004735 name: archenteron is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004734 ! gastrula relationship: part_of UBERON:0007026 ! presumptive gut [Term] id: UBERON:0004786 name: gastrointestinal system mucosa is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system [Term] id: UBERON:0004808 name: gastrointestinal system epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system [Term] id: UBERON:0004906 name: ectodermal part of digestive tract is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: develops_from UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0001555 ! digestive tract relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004907 name: lower digestive tract is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001046 ! hindgut relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system [Term] id: UBERON:0004921 name: subdivision of digestive tract is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0004923 name: organ component layer is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000060 ! anatomical wall [Term] id: UBERON:0005090 name: muscle structure is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0005162 name: multi cell part structure is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0005291 name: embryonic tissue is_a: UBERON:0000479 ! tissue is_a: UBERON:0002050 ! embryonic structure intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002050 ! embryonic structure [Term] id: UBERON:0005409 name: alimentary part of gastrointestinal system is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0005423 name: developing anatomical structure is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0006134 name: nerve fiber is_a: UBERON:0005162 ! multi cell part structure union_of: UBERON:0006135 ! myelinated nerve fiber union_of: UBERON:0006136 ! unmyelinated nerve fiber relationship: part_of UBERON:0001019 ! nerve fasciculus [Term] id: UBERON:0006135 name: myelinated nerve fiber is_a: UBERON:0006134 ! nerve fiber [Term] id: UBERON:0006136 name: unmyelinated nerve fiber is_a: UBERON:0006134 ! nerve fiber [Term] id: UBERON:0006562 name: pharynx is_a: UBERON:0004921 ! subdivision of digestive tract [Term] id: UBERON:0006582 name: statolith is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0006583 ! statocyst [Term] id: UBERON:0006583 name: statocyst is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0006598 name: presumptive structure is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0006846 name: surface groove is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0007010 name: cleaving embryo is_a: UBERON:0000922 ! embryo [Term] id: UBERON:0007023 name: adult organism is_a: UBERON:0000468 ! multicellular organism [Term] id: UBERON:0007026 name: presumptive gut is_a: UBERON:0006598 ! presumptive structure [Term] id: UBERON:0007233 name: 4 cell stage is_a: UBERON:0000067 ! embryo stage part relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007236 name: 8 cell stage is_a: UBERON:0000067 ! embryo stage part relationship: part_of UBERON:0000107 ! cleavage stage [Term] id: UBERON:0007271 name: appendage musculature is_a: UBERON:0001015 ! musculature intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0000026 ! appendage relationship: part_of UBERON:0000026 ! appendage [Term] id: UBERON:0007503 name: epithelial vesicle is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0007524 name: dense mesenchyme tissue is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0008876 name: hypodermis skeletal muscle layer is_a: UBERON:0004253 ! skin muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: part_of UBERON:0002072 ! hypodermis relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0009503 name: mesenchyme of hindgut is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001046 ! hindgut relationship: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0009566 name: intestinal submucosa is_a: UBERON:0018257 ! submucosa of digestive tract intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0010000 name: multicellular anatomical structure is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0010316 name: germ layer / neural crest is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0002532 ! epiblast (generic) [Term] id: UBERON:0010371 name: ecto-epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000483 ! epithelium intersection_of: develops_from UBERON:0000924 ! ectoderm relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0011215 name: central nervous system cell part cluster is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure intersection_of: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0011216 name: organ system subdivision is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000467 ! anatomical system [Term] id: UBERON:0011272 name: embryonic skin basal layer is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0012125 name: dermatological-muscosal system is_a: UBERON:0000467 ! anatomical system [Term] id: UBERON:0012274 name: columnar epithelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0012275 name: meso-epithelium is_a: UBERON:0000483 ! epithelium is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000483 ! epithelium intersection_of: develops_from UBERON:0000926 ! mesoderm relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0013522 name: subdivision of tube is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000025 ! tube [Term] id: UBERON:0013754 name: integumentary system layer is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: part_of UBERON:0002416 ! integumental system relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0013765 name: digestive system element is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0014703 name: anal membrane ectodermal component is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: develops_from UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0001353 ! anal region relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0001353 ! anal region [Term] id: UBERON:0014892 name: skeletal muscle organ is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0003082 ! myotome relationship: part_of UBERON:0018254 ! skeletal musculature [Term] id: UBERON:0015212 name: lateral structure is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0015716 name: anal canal epithelium is_a: UBERON:0001278 ! epithelium of large intestine is_a: UBERON:0014703 ! anal membrane ectodermal component intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0015783 name: smooth muscle layer in fatty layer of subcutaneous tissue is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002072 ! hypodermis relationship: part_of UBERON:0002072 ! hypodermis [Term] id: UBERON:0016888 name: transitional anatomical structure is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0017650 name: developing mesenchymal structure is_a: UBERON:0005423 ! developing anatomical structure [Term] id: UBERON:0018254 name: skeletal musculature is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000383 ! musculature of body [Term] id: UBERON:0018257 name: submucosa of digestive tract is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0001555 ! digestive tract [Term] id: UBERON:0019304 name: sensory organ epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000020 ! sense organ relationship: part_of UBERON:0000020 ! sense organ [Term] id: UBERON:3000961 name: external integument structure is_a: UBERON:0003102 ! surface structure intersection_of: UBERON:0003102 ! surface structure intersection_of: part_of UBERON:0002199 ! integument relationship: part_of UBERON:0002199 ! integument [Typedef] id: :has_start_point name: has_start_point namespace: spatial def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." [BSPO:cjm] comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point. xref: \:has_start_point domain: BSPO:0000010 ! anatomical axis range: CARO:0000000 ! anatomical entity [Typedef] id: BSPO:0000095 name: anatomical_relation namespace: spatial xref: BSPO:0000095 property_value: seeAlso FBql:00005860 is_obsolete: true [Typedef] id: BSPO:0000096 name: anterior_to namespace: spatial def: "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] synonym: "rostral_to" EXACT [] xref: BSPO:0000096 property_value: seeAlso FBcv:0000039 property_value: seeAlso FBql:00005863 is_transitive: true inverse_of: BSPO:0000099 ! posterior_to [Typedef] id: BSPO:0000097 name: distal_to namespace: spatial def: "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)." [BSPO:cjm] xref: BSPO:0000097 property_value: seeAlso FBcv:0000040 property_value: seeAlso FBql:00005867 is_transitive: true inverse_of: BSPO:0000100 ! proximal_to [Typedef] id: BSPO:0000098 name: dorsal_to namespace: spatial def: "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm] xref: BSPO:0000098 property_value: seeAlso FBcv:0000041 property_value: seeAlso FBql:00005865 is_transitive: true inverse_of: BSPO:0000102 ! ventral_to [Typedef] id: BSPO:0000099 name: posterior_to namespace: spatial def: "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] synonym: "caudal_to" NARROW vertebrate [] xref: BSPO:0000099 property_value: seeAlso FBcv:0000045 property_value: seeAlso FBql:00005864 is_transitive: true [Typedef] id: BSPO:0000100 name: proximal_to namespace: spatial def: "x proximal_to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm] comment: The elbow is proximal to the hand, but distal to the shoulder. xref: BSPO:0000100 property_value: seeAlso FBcv:0000047 property_value: seeAlso FBql:00005868 is_transitive: true [Typedef] id: BSPO:0000101 name: obsolete surrounds namespace: spatial xref: BSPO:0000101 property_value: seeAlso FBcv:0000048 property_value: seeAlso FBql:00005861 is_obsolete: true replaced_by: RO:0002221 [Typedef] id: BSPO:0000102 name: ventral_to namespace: spatial def: "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm] xref: BSPO:0000102 property_value: seeAlso FBcv:0000049 property_value: seeAlso FBql:00005866 is_transitive: true [Typedef] id: BSPO:0000103 name: vicinity_of namespace: spatial xref: BSPO:0000103 property_value: seeAlso FBcv:0000050 property_value: seeAlso FBql:00005862 [Typedef] id: BSPO:0000104 name: approximately_perpendicular_to namespace: spatial def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." [BSPO:cjm] xref: BSPO:0000104 domain: BSPO:0000010 ! anatomical axis range: BSPO:0000010 ! anatomical axis [Typedef] id: BSPO:0000105 name: ipsilateral_to namespace: spatial def: "On the same side as. For example, the left arm is ipsilateral to the left leg." [BSPO:cjm] xref: BSPO:0000105 property_value: seeAlso FBql:00005850 is_symmetric: true is_a: BSPO:0000126 ! in_lateral_side_of disjoint_from: BSPO:0000106 ! contralateral_to [Typedef] id: BSPO:0000106 name: contralateral_to namespace: spatial def: "On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg)." [BSPO:cjm] xref: BSPO:0000106 property_value: seeAlso FBql:00005851 is_symmetric: true is_a: BSPO:0000126 ! in_lateral_side_of [Typedef] id: BSPO:0000107 name: deep_to namespace: spatial def: "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." [BSPO:cjm] xref: BSPO:0000107 is_transitive: true inverse_of: BSPO:0000108 ! superficial_to [Typedef] id: BSPO:0000108 name: superficial_to namespace: spatial def: "Near the outer surface of the organism. Thus, skin is superficial to the muscle layer." [BSPO:cjm] xref: BSPO:0000108 is_transitive: true [Typedef] id: BSPO:0000109 name: obsolete surrounded_by namespace: spatial xref: BSPO:0000109 is_obsolete: true replaced_by: RO:0002219 [Typedef] id: BSPO:0000110 name: left_of namespace: spatial def: "Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is left_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o." [BSPO:cjm] xref: BSPO:0000110 is_transitive: true inverse_of: BSPO:0000111 ! right_of [Typedef] id: BSPO:0000111 name: right_of namespace: spatial def: "Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is right_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o." [BSPO:cjm] xref: BSPO:0000111 is_transitive: true [Typedef] id: BSPO:0000113 name: opposite_to namespace: spatial def: "Direcly opposite to. i.e. on the opposite side through the axis." [BSPO:cjm] xref: BSPO:0000113 is_a: BSPO:0000105 ! ipsilateral_to [Typedef] id: BSPO:0000120 name: in_left_side_of namespace: spatial def: "X in_left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000120 is_a: BSPO:0000126 ! in_lateral_side_of inverse_of: BSPO:0000121 ! in_right_side_of [Typedef] id: BSPO:0000121 name: in_right_side_of namespace: spatial def: "X in_right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000121 is_a: BSPO:0000126 ! in_lateral_side_of [Typedef] id: BSPO:0000122 name: in_posterior_side_of namespace: spatial def: "X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000122 is_a: part_of ! part_of [Typedef] id: BSPO:0000123 name: in_anterior_side_of namespace: spatial def: "X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000123 is_a: part_of ! part_of [Typedef] id: BSPO:0000124 name: in_proximal_side_of namespace: spatial def: "x in_proximal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the proximal portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000124 is_a: part_of ! part_of [Typedef] id: BSPO:0000125 name: in_distal_side_of namespace: spatial def: "x in_distal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the distal portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000125 is_a: part_of ! part_of [Typedef] id: BSPO:0000126 name: in_lateral_side_of namespace: spatial def: "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure" [UBERON:cjm] xref: BSPO:0000126 is_a: part_of ! part_of [Typedef] id: BSPO:0001100 name: in_superficial_part_of namespace: spatial def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion." [BSPO:cjm] xref: BSPO:0001100 is_a: part_of ! part_of [Typedef] id: BSPO:0001101 name: in_deep_part_of namespace: spatial def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion." [BSPO:cjm] xref: BSPO:0001101 is_a: part_of ! part_of [Typedef] id: BSPO:0001106 name: proximalmost_part_of namespace: spatial def: "X proximalmost_part_of Y <=> X is in_proximal_side_of Y and X is adjacent_to the proximal boundary of Y" [https://orcid.org/0000-0002-6601-2165] xref: BSPO:0001106 is_a: BSPO:0000124 ! in_proximal_side_of [Typedef] id: BSPO:0001107 name: immediately_deep_to namespace: spatial def: "x immediately_deep_to y iff x deep_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0001107 is_a: BSPO:0000107 ! deep_to inverse_of: BSPO:0015014 ! immediately_superficial_to [Typedef] id: BSPO:0001108 name: distalmost_part_of namespace: spatial def: "X distalmost_part_of Y <=> X is in_distal_side_of Y and X is adjacent_to the distal boundary of Y" [https://orcid.org/0000-0002-6601-2165] xref: BSPO:0001108 is_a: BSPO:0000125 ! in_distal_side_of [Typedef] id: BSPO:0001113 name: preaxialmost_part_of namespace: spatial xref: BSPO:0001113 is_a: part_of ! part_of [Typedef] id: BSPO:0001114 name: postaxial_to namespace: spatial def: "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side." [http://medical-dictionary.thefreedictionary.com/postaxial] synonym: "posterior_to (developmentally)" RELATED [MA:th] xref: BSPO:0001114 is_transitive: true [Typedef] id: BSPO:0001115 name: postaxialmost_part_of namespace: spatial xref: BSPO:0001115 is_a: part_of ! part_of [Typedef] id: BSPO:0005001 name: intersects_midsagittal_plane_of namespace: spatial def: "X intersects_median_plane of iff X crosses the midine plane of Y." [] xref: BSPO:0005001 is_a: part_of ! part_of [Typedef] id: BSPO:0015001 name: finishes_axis namespace: spatial comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes_axis x, and x has_end_point p, then x overlaps p xref: BSPO:0015001 domain: BSPO:0000054 ! anatomical side range: BSPO:0000010 ! anatomical axis [Typedef] id: BSPO:0015002 name: follows_axis namespace: spatial xref: BSPO:0015002 range: BSPO:0000010 ! anatomical axis [Typedef] id: BSPO:0015003 name: has_axis namespace: spatial xref: BSPO:0015003 [Typedef] id: BSPO:0015004 name: has_end_point namespace: spatial def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." [BSPO:cjm] comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point xref: BSPO:0015004 domain: BSPO:0000010 ! anatomical axis range: CARO:0000000 ! anatomical entity [Typedef] id: BSPO:0015005 name: orthogonal_to namespace: spatial def: "crossing at right angles" [BSPO:cjm] xref: BSPO:0015005 domain: BSPO:0000010 ! anatomical axis range: BSPO:0000400 ! anatomical plane [Typedef] id: BSPO:0015007 name: starts_axis namespace: spatial comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts_axis x, and x has_start_point p, then x overlaps p xref: BSPO:0015007 domain: BSPO:0000054 ! anatomical side range: BSPO:0000010 ! anatomical axis [Typedef] id: BSPO:0015008 name: surface_of namespace: spatial comment: placeholder. used for relation between anatomical surface and an anatomical side. xref: BSPO:0015008 domain: BSPO:0000005 ! anatomical surface [Typedef] id: BSPO:0015009 name: immediately_anterior_to namespace: spatial def: "x immediately_anterior_to y iff x anterior_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015009 is_a: BSPO:0000096 ! anterior_to inverse_of: BSPO:0015012 ! immediately_posterior_to [Typedef] id: BSPO:0015010 name: immediately_distal_to namespace: spatial def: "x immediately_distal_to y iff x distal_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015010 is_a: BSPO:0000097 ! distal_to inverse_of: BSPO:0015013 ! immediately_proximal_to [Typedef] id: BSPO:0015011 name: immediately_dorsal_to namespace: spatial def: "x immediately_dorsal_to y iff x dorsal_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015011 is_a: BSPO:0000098 ! dorsal_to inverse_of: BSPO:0015015 ! immediately_ventral_to [Typedef] id: BSPO:0015012 name: immediately_posterior_to namespace: spatial def: "x immediately_posterior_to y iff x posterior_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015012 is_a: BSPO:0000099 ! posterior_to [Typedef] id: BSPO:0015013 name: immediately_proximal_to namespace: spatial def: "x immediately_proximal_to y iff x proximal_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015013 is_a: BSPO:0000100 ! proximal_to [Typedef] id: BSPO:0015014 name: immediately_superficial_to namespace: spatial def: "x immediately_superficial_to y iff x superficial_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015014 is_a: BSPO:0000108 ! superficial_to [Typedef] id: BSPO:0015015 name: immediately_ventral_to namespace: spatial def: "x immediately_ventral_to y iff x ventral_to y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015015 is_a: BSPO:0000102 ! ventral_to [Typedef] id: BSPO:0015016 name: immediately_left_of namespace: spatial def: "x immediately_left_of y iff x left_of y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015016 is_a: BSPO:0000110 ! left_of inverse_of: BSPO:0015017 ! immediately_right_of [Typedef] id: BSPO:0015017 name: immediately_right_of namespace: spatial def: "x immediately_right_of y iff x right_of y and x is contiguous with y." [BSPO:curators] xref: BSPO:0015017 is_a: BSPO:0000111 ! right_of [Typedef] id: BSPO:1000000 name: preaxial_to namespace: spatial def: "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front." [http://medical-dictionary.thefreedictionary.com/preaxial] synonym: "anterior_to (developmentally)" RELATED [MA:th] synonym: "lateral (radial) to" RELATED [] synonym: "medial (tibial) to" RELATED [] xref: BSPO:1000000 is_transitive: true [Typedef] id: RO:0002220 name: adjacent_to namespace: spatial xref: RO:0002220 is_symmetric: true [Typedef] id: bearer_of xref: RO:0000053 [Typedef] id: capable_of name: capable of xref: RO:0002215 is_a: capable_of_part_of ! capable of part of [Typedef] id: capable_of_part_of name: capable of part of xref: RO:0002216 is_a: causal_agent_in ! causal agent in is_a: functionally_related_to ! functionally related to [Typedef] id: causal_agent_in name: causal agent in xref: RO:0002500 is_a: causal_relation_between_material_entity_and_a_process ! causal relation between material entity and a process [Typedef] id: causal_relation_between_material_entity_and_a_process name: causal relation between material entity and a process xref: RO:0002595 is_a: causally_related_to ! causally related to [Typedef] id: causally_related_to name: causally related to xref: RO:0002410 is_a: related_via_dependence_to ! related via dependence to [Typedef] id: developmentally_preceded_by name: developmentally preceded by xref: RO:0002258 is_a: developmentally_related_to ! developmentally related to [Typedef] id: developmentally_related_to name: developmentally related to xref: RO:0002324 [Typedef] id: develops_from name: develops from name: develops_from xref: RO:0002202 is_transitive: true is_a: developmentally_preceded_by ! developmentally preceded by [Typedef] id: develops_into xref: RO:0002203 [Typedef] id: functionally_related_to name: functionally related to xref: RO:0002328 [Typedef] id: has_part name: has_part namespace: spatial xref: BFO:0000051 is_transitive: true is_a: overlaps ! overlaps [Typedef] id: has_plasma_membrane_part xref: RO:0002104 [Typedef] id: lacks_plasma_membrane_part name: lacks_plasma_membrane_part xref: lacks_plasma_membrane_part [Typedef] id: mereotopologically_related_to name: mereotopologically related to xref: RO:0002323 [Typedef] id: overlaps name: overlaps namespace: spatial def: "x overlaps y iff they have some part in common." [BSPO:cjm] comment: "(forall (x y) (iff (overlaps x y) (exists (z) (and (part_of z x) (part_of z y)))))" CLIF [] xref: RO:0002131 is_a: mereotopologically_related_to ! mereotopologically related to [Typedef] id: parallel_to name: parallel_to namespace: spatial def: "x is parallel t y iff x and y are lines or planes which when extended indefinitely do not cross." [BSPO:curators] [Typedef] id: part_of name: part of name: part_of namespace: spatial xref: BFO:0000050 is_transitive: true is_a: overlaps ! overlaps inverse_of: has_part ! has_part [Typedef] id: passes_through name: passes_through namespace: spatial def: "Intersects at two points." [BSPO:cjm] xref: BSPO:0015006 domain: BSPO:0000010 ! anatomical axis [Typedef] id: related_via_dependence_to name: related via dependence to xref: RO:0002609