cteno.owl
type: Ontology
version IRI: cteno.owl
imports: ro import.owl
imports: bspo.owl
imports: chebi import.owl
imports: taxonomy.owl
imports: uberon import.owl
imports: bspo import.owl
imports: cl import.owl
imports: go import.owl
comment: CTENO is an ontology describing the anatomy and developmet of ctenophores.

ctene plate
type: Class
subclass of: UBERON_0000062
subclass of: Restriction
  on property: BFO_0000050
  some values from: ctene row
subclass of: Restriction
  on property: RO_0002216
  some values from: GO_0040011
subclass of: Restriction
  on property: RO_0002254
  some values from: e1 micromere
subclass of: Restriction
  on property: RO_0002254
  some values from: m12 micromere
subclass of: Restriction
  on property: RO_0002473
  some values from: GO_0005929
disjoint with: Restriction
  on property: BFO_0000050
  some values from: NCBITaxon_140471
IAO_0000115: A collection of cilia attached to basal cushions and made up of polster cells. A characteristic feature of ctenophores
UBPROP_0000008: lost in Platyctenida
has broad synonym: ctene
has related synonym: comb plate
comment: The move- ment of the ctene plates are controlled by the apical organ, a sensory structure containing a statocyst located at the aboral pole (Tamm, 1982, for review)

outer epidermis
type: Class
subclass of: UBERON_0000483

gastrodermis
type: Class
subclass of: UBERON_0000483

mesoglea
type: Class
subclass of: UBERON_0000479
subclass of: Restriction
  on property: BFO_0000051
  some values from: CL_0000134
subclass of: Restriction
  on property: BFO_0000051
  some values from: CL_0000187
IAO_0000115: A thick jelly-like layer between the epidermis and gastrodermis. The mesoglea is mostly acellular and composed of extracellular matrix, but it also has some muscle and mesenchymal cells.

comb plate cilium
type: Class
equivalent class: Class
  intersection of: GO_0005929
  intersection of: Restriction
    on property: BFO_0000050
    some values from: ctene plate
subclass of: GO_0005929
subclass of: Restriction
  on property: BFO_0000050
  some values from: ctene plate

sensory cell cilium
type: Class
equivalent class: Class
  intersection of: GO_0005929
  intersection of: Restriction
    on property: BFO_0000050
    some values from: Class
      intersection of: CL_0000000
      intersection of: Restriction
        on property: BFO_0000050
        some values from: UBERON_0001032
subclass of: GO_0005929
subclass of: Restriction
  on property: BFO_0000050
  some values from: Class
    intersection of: CL_0000000
    intersection of: Restriction
      on property: BFO_0000050
      some values from: UBERON_0001032

tentacle sheath cilium
type: Class
subclass of: GO_0005929

polar field cilium
type: Class
equivalent class: Class
  intersection of: GO_0005929
  intersection of: Restriction
    on property: BFO_0000050
    some values from: polar field
subclass of: GO_0005929
subclass of: Restriction
  on property: BFO_0000050
  some values from: polar field

auricular cilium
type: Class
subclass of: GO_0005929

pharyngeal cilium
type: Class
subclass of: GO_0005929

good groove cilium
type: Class
subclass of: GO_0005929

balancer cilium
type: Class
equivalent class: Class
  intersection of: GO_0005929
  intersection of: Restriction
    on property: BFO_0000050
    some values from: balancer cell
subclass of: sensory cell cilium
subclass of: Restriction
  on property: BFO_0000050
  some values from: balancer cell

dome cilium
type: Class
subclass of: GO_0005929
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical sense organ
comment: The statocyst is protected by a transparent dome made of long, immobile cilia.

aboral groove cilium
type: Class
subclass of: GO_0005929

extracellular matrix of mesoglea
type: Class
equivalent class: Class
  intersection of: GO_0031012
  intersection of: Restriction
    on property: BFO_0000050
    some values from: mesoglea
subclass of: GO_0031012
subclass of: Restriction
  on property: BFO_0000050
  some values from: mesoglea
has exact synonym: mesogleal extracellular matrix

polster cell
type: Class
subclass of: CL_0000000
subclass of: GO_0005623

apical sense organ
type: Class
subclass of: UBERON_0000062
subclass of: Restriction
  on property: BFO_0000050
  some values from: aboral part of organism
subclass of: Restriction
  on property: BFO_0000050
  some values from: UBERON_0001016
subclass of: Restriction
  on property: BFO_0000050
  some values from: UBERON_0001032
subclass of: Restriction
  on property: BFO_0000051
  qualified cardinality: 0
  on class: Class
    intersection of: CL_0000000
    intersection of: Class
      complement of: lithocyte
    intersection of: Class
      complement of: lithocyte progenitor
    intersection of: Restriction
      on property: RO_0002202
      some values from: micromere
has related synonym: aboral organ
has related synonym: apical organ

tentacle
type: Class
subclass of: UBERON_0000026
UBPROP_0000008: absent in beroids
comment: Most ctenophores also bear two muscular tentacles which are used for prey capture, and ultrastruc- tural studies have shown that these structures are distinct from cnidarian tentacles (Hernandez-Nicaise, 1991)

photocyte
type: Class
subclass of: CL_0000000
subclass of: GO_0005623
subclass of: Restriction
  on property: RO_0002202
  some values from: 2M macromere
IAO_0000115: Light-producing cell present in nearly all ctenophores

colloblast
type: Class
subclass of: CL_0000000
subclass of: GO_0005623
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle
subclass of: Restriction
  on property: RO_0002202
  some values from: e2 micromere
IAO_0000115: A specialized adhesive cell found in ctenophores

oral lobe
type: Class
subclass of: UBERON_0000062
IAO_0000115: A conspicuous lobed structure used for feeding, characteristic of the Lobata ("sea walnuts")

adult ctenophore
type: Class
equivalent class: Class
  intersection of: UBERON_0000468
  intersection of: Restriction
    on property: RO_0002491
    some values from: ctenophore adult stage
subclass of: UBERON_0007023
subclass of: Restriction
  on property: RO_0002491
  some values from: ctenophore adult stage
subclass of: Restriction
  on property: SIO_000658
  some values from: cydippid larva
UBPROP_0000008: Pleurobrachia species maintain cydippid forms as adults, but the others become radically different: M. leidyi greatly reduce their tentacles and form large oral lobes; B. ovata lack tentacles and form large oral lips that they use to engulf or nip at other ctenophores; and platyctenes become compressed in the oral-aboral direction and adopt a sessile or creeping lifestyle, crawling around the substratum rather than locomoting by beating their ctene rows.

Axiom
annotated source: adult ctenophore
annotated property: UBPROP_0000008
annotated target: Pleurobrachia species maintain cydippid forms as adults, but the others become radically different: M. leidyi greatly reduce their tentacles and form large oral lobes; B. ovata lack tentacles and form large oral lips that they use to engulf or nip at other ctenophores; and platyctenes become compressed in the oral-aboral direction and adopt a sessile or creeping lifestyle, crawling around the substratum rather than locomoting by beating their ctene rows.
source: doi:10.1101/pdb.emo106

cydippid larva
type: Class
equivalent class: Class
  intersection of: UBERON_0000468
  intersection of: Restriction
    on property: RO_0002491
    some values from: cydippid stage
subclass of: UBERON_0002548
subclass of: Restriction
  on property: RO_0002491
  some values from: cydippid stage
IAO_0000115: A ctenophore larva

cydippid stage
type: Class
subclass of: UBERON_0000069

ctenophore adult stage
type: Class
subclass of: UBERON_0000066

meridional canal
type: Class
subclass of: UBERON_0004111
IAO_0000115: A canal that is associated with a testis and an ovary

Axiom
annotated source: meridional canal
annotated property: IAO_0000115
annotated target: A canal that is associated with a testis and an ovary
source: doi:10.1101/pdb.emo106

nurse cell
type: Class
subclass of: CL_0000000
subclass of: GO_0005623
UBPROP_0000008: In Bolinopsis microptera each oocyte is associated with as many as 100 nurse cells.
comment: connected to the oocyte by cytoplasmic bridges that transport cytoplasm and yolk to the oocyte (Dunlap Pianka 1974)

ectoplasm
type: Class
subclass of: GO_0044444

endoplasm
type: Class
subclass of: GO_0005575

subcortical plasm
type: Class
subclass of: GO_0005575
subclass of: Restriction
  on property: RO_0002220
  some values from: ectoplasm
subclass of: Restriction
  on property: RO_0002220
  some values from: endoplasm

periodic acid Schiff positive yolk particles
type: Class
subclass of: GO_0005575

gonadopore
type: Class
subclass of: UBERON_0000161

anal pore
type: Class
subclass of: UBERON_0000161
subclass of: Restriction
  on property: BFO_0000050
  some values from: backslash quadrant
subclass of: Restriction
  on property: BFO_0000050
  some values from: aboral part of organism

ctenophore anal canal
type: Class
equivalent class: Class
  intersection of: UBERON_0004111
  intersection of: Restriction
    on property: RO_0002176
    some values from: anal pore
subclass of: UBERON_0004111
subclass of: Restriction
  on property: BFO_0000050
  some values from: backslash quadrant
subclass of: Restriction
  on property: RO_0002176
  some values from: anal pore
subclass of: Restriction
  on property: RO_0002202
  some values from: 2M macromere

epitheliomuscular cell
type: Class
subclass of: CL_0000066
comment: To be ceded to cnidarian anatomy ontology

parietal muscle
type: Class
subclass of: UBERON_0001135
subclass of: Restriction
  on property: BFO_0000050
  some values from: UBERON_0002416
IAO_0000115: Ribbon-shaped smooth muscle that resides between the glandular epithelial cells and the basal lamina

giant smooth muscle
type: Class
subclass of: UBERON_0001135

mesogleal muscle
type: Class
equivalent class: Class
  intersection of: UBERON_0002385
  intersection of: Restriction
    on property: BFO_0000050
    some values from: mesoglea
subclass of: giant smooth muscle
subclass of: Restriction
  on property: BFO_0000050
  some values from: mesoglea

longitudinal mesogleal muscle
type: Class
subclass of: mesogleal muscle

circumferential mesogleal muscle
type: Class
subclass of: mesogleal muscle

radial mesogleal muscle
type: Class
subclass of: mesogleal muscle

tentacular muscle
type: Class
equivalent class: Class
  intersection of: UBERON_0001630
  intersection of: Restriction
    on property: BFO_0000050
    some values from: tentacle
subclass of: UBERON_0014892
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle
editor notes: Within the tentacles themselves are mesogleal muscles that are constantly being produced from cells at the base of the tentacle. We need to distinguish between muscles that are part of the tentacle proper and the mesogleal component (see mesogleal muscles)

trans-tentacular muscle
type: Class
subclass of: UBERON_0014892
IAO_0000115: A muscle that connects the two tentacle apparatuses

tentilla
type: Class
subclass of: UBERON_0000026

striated muscle of tentilla
type: Class
subclass of: UBERON_0002036
UBPROP_0000008: The only description of striated muscle is in the tentilla of Euplokamis (Chun 1880)

mesogleal nerve fiber
type: Class
equivalent class: Class
  intersection of: UBERON_0006134
  intersection of: Restriction
    on property: BFO_0000051
    some values from: Restriction
      on property: RO_0001025
      some values from: mesoglea
subclass of: UBERON_0006134
subclass of: Restriction
  on property: BFO_0000051
  some values from: Restriction
    on property: RO_0001025
    some values from: mesoglea
comment: cross the basal lamina and run through the mesoglea

subepidermal nerve net
type: Class
subclass of: UBERON_0011216
subclass of: Restriction
  on property: BFO_0000050
  some values from: UBERON_0001016
subclass of: Restriction
  on property: BFO_0000051
  some values from: CL_0000210
subclass of: Restriction
  on property: BFO_0000051
  some values from: apical sense organ

gastrodermal nerve
type: Class
equivalent class: Class
  intersection of: UBERON_0001021
  intersection of: Restriction
    on property: RO_0001025
    some values from: gastrodermis
subclass of: UBERON_0001021
subclass of: Restriction
  on property: RO_0001025
  some values from: gastrodermis
subclass of: Restriction
  on property: RO_0001025
  some values from: meridional canal
subclass of: Restriction
  on property: RO_0002134
  some values from: photocyte
has exact synonym: subgastrodermal nerve

mesoglea of tentacle
type: Class
equivalent class: Class
  intersection of: mesoglea
  intersection of: Restriction
    on property: BFO_0000050
    some values from: tentacle
subclass of: mesoglea
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle

tastborsten cell
type: Class
subclass of: nerve network cell
comment: characterized by a single thin ciliary projection

taststiften cell
type: Class
subclass of: nerve network cell
has exact synonym: hoplocyst
comment: possess one or several short pointed pegs

nerve network cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000050
    some values from: subepidermal nerve net
subclass of: CL_0002319
subclass of: Restriction
  on property: BFO_0000050
  some values from: subepidermal nerve net
subclass of: Restriction
  on property: RO_0002202
  some values from: m1 micromere

nerve fiber of mesoglea of tentacle
type: Class
equivalent class: Class
  intersection of: UBERON_0006134
  intersection of: Restriction
    on property: BFO_0000051
    some values from: Restriction
      on property: RO_0001025
      some values from: Class
        intersection of: mesoglea
        intersection of: Restriction
subclass of: mesogleal nerve fiber
subclass of: Restriction
  on property: BFO_0000051
  some values from: Restriction
    on property: RO_0001025
    some values from: Class
      intersection of: mesoglea
      intersection of: Restriction
        on property: BFO_0000050
        some values from: tentacle

oral pole
type: Class
subclass of: UBERON_0000475

apical organ floor
type: Class
subclass of: UBERON_0000483
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical sense organ
subclass of: Restriction
  on property: BFO_0000051
  some values from: balancer cilium
subclass of: Restriction
  on property: RO_0002254
  some values from: e1 micromere
comment: Genes: MlIslet

lithocyte
type: Class
subclass of: CL_0002319
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical sense organ
subclass of: Restriction
  on property: RO_0002207
  some values from: lithocyte progenitor
IAO_0000115: A mineralized cell generated and constantly replaced in the floor of the apical organ. They are supported on top of the balancing cilia that make up the gravity-sensing statocyst of the apical organ.
comment: control the posture of the animal

balancer cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000051
    some values from: balancer cilium
subclass of: CL_0000006
subclass of: CL_0000098
subclass of: CL_0000199
subclass of: CL_0000710
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical organ floor
subclass of: Restriction
  on property: BFO_0000051
  some values from: balancer cilium

apical organ statolith
type: Class
equivalent class: Class
  intersection of: UBERON_0006582
  intersection of: Restriction
    on property: BFO_0000050
    some values from: apical sense organ
subclass of: UBERON_0006582
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical sense organ
comment: covered by a dome of nonmotile cilia

tentacular nerve
type: Class
equivalent class: Class
  intersection of: UBERON_0001021
  intersection of: Restriction
    on property: RO_0002176
    some values from: apical sense organ
  intersection of: Restriction
    on property: RO_0002176
    some values from: tentacle
subclass of: UBERON_0001021
subclass of: Restriction
  on property: RO_0002176
  some values from: apical sense organ
subclass of: Restriction
  on property: RO_0002176
  some values from: tentacle

epithelial papilla
type: Class
subclass of: CL_0000006
subclass of: CL_0000098
subclass of: CL_0000199
subclass of: CL_0000710
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical sense organ

photoprotein
type: Class
subclass of: CHEBI_36080
has related synonym: mnemiopsin
comment: emits light in the presence of calcium ions (Ward and Seliger 1974).

quadrant
type: Class
subclass of: UBERON_0000475
subclass of: Restriction
  on property: RO_0002220
  some values from: adesophageal plane
subclass of: Restriction
  on property: RO_0002220
  some values from: tentacular plane
disjoint union of: slash quadrant
disjoint union of: backslash quadrant
IAO_0000115: One of of four nearly identical quadrants organized along the oral-aboral axis. Each of the four quadrants is derived largely from one cell of the four-cell-stage embryo. At the eight-cell stage each quadrant contains a single E ("end") and M ("middle") blastomere. Subsequently, micromeres are formed first at the aboral pole and later at the oral pole.
comment: Two orthogonal planes run along the oral–aboral axis which define four quadrants (Fig.

Axiom
annotated source: quadrant
annotated property: IAO_0000115
annotated target: One of of four nearly identical quadrants organized along the oral-aboral axis. Each of the four quadrants is derived largely from one cell of the four-cell-stage embryo. At the eight-cell stage each quadrant contains a single E ("end") and M ("middle") blastomere. Subsequently, micromeres are formed first at the aboral pole and later at the oral pole.
source: PMID:10525332

ctenophore blastomere
type: Class
subclass of: CL_0000353
disjoint union of: micromere
disjoint union of: macromere

E macromere, 8 cell stage
type: Class
subclass of: macromere, 8 cell stage

M blastomere
type: Class
subclass of: macromere, 8 cell stage

micromere
type: Class
subclass of: ctenophore blastomere
subclass of: Restriction
  on property: RO_0002496
  some values from: UBERON_0007236

2M macromere
type: Class
equivalent class: Class
  intersection of: macromere, 32 cell stage and above
  intersection of: Restriction
    on property: RO_0002207
    some values from: 1M macromere, 16 cell stage
subclass of: macromere, 32 cell stage and above
subclass of: Restriction
  on property: RO_0002207
  some values from: 1M macromere, 16 cell stage

3E macromere
type: Class
subclass of: macromere, 60 cell stage

circumpharyngeal muscle cell
type: Class
subclass of: CL_0000187
subclass of: Restriction
  on property: RO_0002202
  some values from: 2M-slash macromere

EM macromere, 4 cell stage
type: Class
equivalent class: Class
  intersection of: macromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: UBERON_0007233
subclass of: macromere
subclass of: Restriction
  on property: RO_0002491
  some values from: UBERON_0007233
disjoint union of: EM-slash blastomere
disjoint union of: EM-backslash blastomere

EM-slash blastomere
type: Class
subclass of: EM macromere, 4 cell stage

EM-backslash blastomere
type: Class
subclass of: EM macromere, 4 cell stage

M-slash blastomere
type: Class
equivalent class: Class
  intersection of: M blastomere
  intersection of: Restriction
    on property: RO_0002202
    some values from: EM-slash blastomere
subclass of: M blastomere
subclass of: Restriction
  on property: RO_0002202
  some values from: EM-slash blastomere

M-blackslash blastomere
type: Class
equivalent class: Class
  intersection of: M blastomere
  intersection of: Restriction
    on property: RO_0002202
    some values from: EM-backslash blastomere
subclass of: M blastomere
subclass of: Restriction
  on property: RO_0002202
  some values from: EM-backslash blastomere

macromere
type: Class
subclass of: ctenophore blastomere

1M macromere, 16 cell stage
type: Class
equivalent class: Class
  intersection of: macromere, 16 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: M macromere, 8 cell stage
subclass of: macromere, 16 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: M macromere, 8 cell stage

2E macromere, 32 cell stage
type: Class
equivalent class: Class
  intersection of: macromere, 32 cell stage and above
  intersection of: Restriction
    on property: RO_0002207
    some values from: 1E macromere, 16 cell stage
subclass of: macromere, 32 cell stage and above
subclass of: Restriction
  on property: RO_0002207
  some values from: 1E macromere, 16 cell stage

3M macromere
type: Class
subclass of: macromere, 60 cell stage

M macromere, 8 cell stage
type: Class
subclass of: macromere, 8 cell stage
disjoint union of: M-slash blastomere
disjoint union of: M-backslash macromere

macromere, 8 cell stage
type: Class
equivalent class: Class
  intersection of: macromere
  intersection of: Restriction
    on property: RO_0002207
    some values from: EM macromere, 4 cell stage
equivalent class: Class
  intersection of: macromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: UBERON_0007236
subclass of: macromere
subclass of: Restriction
  on property: RO_0002207
  some values from: EM macromere, 4 cell stage
subclass of: Restriction
  on property: RO_0002491
  some values from: UBERON_0007236
disjoint union of: E macromere, 8 cell stage
disjoint union of: M macromere, 8 cell stage

M-backslash macromere
type: Class
equivalent class: Class
  intersection of: M macromere, 8 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: EM-backslash blastomere
subclass of: M macromere, 8 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: EM-backslash blastomere

M-slash macromere
type: Class
equivalent class: Class
  intersection of: M macromere, 8 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: EM-slash blastomere
subclass of: M macromere, 8 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: EM-slash blastomere

macromere, 16 cell stage
type: Class
equivalent class: Class
  intersection of: macromere
  intersection of: Restriction
    on property: RO_0002207
    some values from: macromere, 8 cell stage
equivalent class: Class
  intersection of: macromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: ctenophore 16 cell stage
subclass of: macromere
subclass of: Restriction
  on property: RO_0002207
  some values from: macromere, 8 cell stage
subclass of: Restriction
  on property: RO_0002491
  some values from: ctenophore 16 cell stage

1E macromere, 16 cell stage
type: Class
equivalent class: Class
  intersection of: macromere, 16 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: E macromere, 8 cell stage
subclass of: macromere, 16 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: E macromere, 8 cell stage

macromere, 32 cell stage and above
type: Class
equivalent class: Class
  intersection of: macromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: ctenophore 32 cell stage
subclass of: macromere
subclass of: Restriction
  on property: RO_0002491
  some values from: ctenophore 32 cell stage
comment: 32 cell stage refers to time of birth. 2M cells persist

macromere, 60 cell stage
type: Class
equivalent class: Class
  intersection of: macromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: ctenophore 60 cell stage
subclass of: macromere
subclass of: Restriction
  on property: RO_0002491
  some values from: ctenophore 60 cell stage
comment: 2M cells persist

1M-backslash macromere, 16 cell stage
type: Class
equivalent class: Class
  intersection of: 1M macromere, 16 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: M-backslash macromere
subclass of: 1M macromere, 16 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: M-backslash macromere

1M-slash macromere, 16 cell stage
type: Class
equivalent class: Class
  intersection of: 1M macromere, 16 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: M-slash blastomere
subclass of: 1M macromere, 16 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: M-slash blastomere

2M-slash macromere
type: Class
equivalent class: Class
  intersection of: 2M macromere
  intersection of: Restriction
    on property: RO_0002207
    some values from: 1M-slash macromere, 16 cell stage
subclass of: 2M macromere
subclass of: Restriction
  on property: RO_0002207
  some values from: 1M-slash macromere, 16 cell stage

2M-backslash macromere
type: Class
equivalent class: Class
  intersection of: 2M macromere
  intersection of: Restriction
    on property: RO_0002207
    some values from: 1M-backslash macromere, 16 cell stage
subclass of: 2M macromere
subclass of: Restriction
  on property: RO_0002207
  some values from: 1M-backslash macromere, 16 cell stage

3M-slash macromere, 60 cell stage
type: Class
subclass of: 3M macromere

3M-backslash macromere, 30 cell stage
type: Class
subclass of: 3M macromere

micromere, 16 cell stage
type: Class
equivalent class: Class
  intersection of: micromere
  intersection of: Restriction
    on property: RO_0002207
    some values from: macromere, 8 cell stage
equivalent class: Class
  intersection of: micromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: ctenophore 16 cell stage
subclass of: micromere
subclass of: Restriction
  on property: RO_0002207
  some values from: macromere, 8 cell stage
subclass of: Restriction
  on property: RO_0002491
  some values from: ctenophore 16 cell stage

micromere, 32 cell stage
type: Class
equivalent class: Class
  intersection of: micromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: ctenophore 32 cell stage
subclass of: micromere
subclass of: Restriction
  on property: RO_0002491
  some values from: ctenophore 32 cell stage

micromere, 60 cell stage
type: Class
equivalent class: Class
  intersection of: micromere
  intersection of: Restriction
    on property: RO_0002491
    some values from: ctenophore 60 cell stage
subclass of: micromere
subclass of: Restriction
  on property: RO_0002207
  some values from: m11 micromere
subclass of: Restriction
  on property: RO_0002491
  some values from: ctenophore 60 cell stage

e1 micromere
type: Class
equivalent class: Class
  intersection of: micromere, 16 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: E macromere, 8 cell stage
subclass of: micromere, 16 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: E macromere, 8 cell stage

m1 micromere
type: Class
equivalent class: Class
  intersection of: micromere, 16 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: M macromere, 8 cell stage
subclass of: micromere, 16 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: M macromere, 8 cell stage

m2 micromere
type: Class
equivalent class: Class
  intersection of: micromere, 32 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: 1M macromere, 16 cell stage
subclass of: micromere, 32 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: 1M macromere, 16 cell stage

m11 micromere
type: Class
subclass of: micromere, 32 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: m1 micromere

m12 micromere
type: Class
subclass of: micromere, 32 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: m1 micromere

e2 micromere
type: Class
equivalent class: Class
  intersection of: micromere, 32 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: 1E macromere, 16 cell stage
subclass of: micromere, 32 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: 1E macromere, 16 cell stage

e11 micromere
type: Class
subclass of: micromere, 32 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: e1 micromere
comment: e11 and m11 lie closest to sagittal plane

e12 micromere
type: Class
subclass of: micromere, 32 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: e1 micromere

m21 micromere
type: Class
subclass of: micromere, 60 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: m2 micromere

m22 micromere
type: Class
subclass of: micromere, 60 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: m2 micromere

m121 micromere
type: Class
subclass of: micromere, 60 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: m12 micromere

m122 micromere
type: Class
subclass of: micromere, 60 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: m12 micromere

e3 micromere
type: Class
equivalent class: Class
  intersection of: micromere, 60 cell stage
  intersection of: Restriction
    on property: RO_0002207
    some values from: 2E macromere, 32 cell stage
subclass of: micromere, 60 cell stage
subclass of: Restriction
  on property: RO_0002207
  some values from: 2E macromere, 32 cell stage

e22 micromere
type: Class
subclass of: micromere, 60 cell stage

e21 micromere
type: Class
subclass of: micromere, 60 cell stage

m111 micromere
type: Class
subclass of: micromere, 60 cell stage

m112 micromere
type: Class
subclass of: micromere, 60 cell stage

ctenophore 16 cell stage
type: Class
subclass of: UBERON_0000067
subclass of: Restriction
  on property: RO_0002087
  some values from: UBERON_0007236

ctenophore 32 cell stage
type: Class
subclass of: UBERON_0000067
subclass of: Restriction
  on property: RO_0002087
  some values from: ctenophore 16 cell stage

ctenophore 60 cell stage
type: Class
subclass of: UBERON_0000067

micromere, formed during gastulation
type: Class
equivalent class: Class
  intersection of: micromere
  intersection of: Restriction
    on property: BFO_0000068
    some values from: UBERON_0000109
subclass of: micromere
subclass of: Restriction
  on property: BFO_0000068
  some values from: UBERON_0000109

tentacle epithelium
type: Class
equivalent class: Class
  intersection of: UBERON_0000483
  intersection of: Restriction
    on property: BFO_0000050
    some values from: tentacle
subclass of: UBERON_0000483
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle
subclass of: Restriction
  on property: RO_0002254
  some values from: e1 micromere

tentacle sheath
type: Class
subclass of: UBERON_0004923
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle

ctenophore pharynx
type: Class
subclass of: UBERON_0006562
subclass of: Restriction
  on property: RO_0002202
  some values from: ctenophore blastopore
IAO_0000115: An ectodermal structure which connects the mouth to the endodermal component of the gut, deep inside the animal

tentacle sheath cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000050
    some values from: tentacle sheath
subclass of: CL_0000000
subclass of: GO_0005623
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle sheath
subclass of: Restriction
  on property: RO_0002202
  some values from: e1 micromere

longitudinal mesogleal muscle cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000050
    some values from: longitudinal mesogleal muscle
subclass of: CL_0000187
subclass of: Restriction
  on property: BFO_0000050
  some values from: longitudinal mesogleal muscle
subclass of: Restriction
  on property: RO_0002202
  some values from: 3E macromere

radial mesogleal muscle cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000050
    some values from: radial mesogleal muscle
subclass of: CL_0000187
subclass of: Restriction
  on property: BFO_0000050
  some values from: radial mesogleal muscle
subclass of: Restriction
  on property: RO_0002202
  some values from: 3E macromere

stellate mesenchymal cell
type: Class
subclass of: CL_0000134
subclass of: Restriction
  on property: RO_0002202
  some values from: Class
    union of: 2M macromere
    union of: 3E macromere
IAO_0000115: A multipolar mesenchymal cell found in the stellate mesenchyme. May be phagocytic. absent in derivatives of 2M? macromeres.

tentacle muscle cell
type: Class
equivalent class: Class
  intersection of: CL_0000187
  intersection of: Restriction
    on property: BFO_0000050
    some values from: tentacle
subclass of: CL_0000187
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle

longitudinal pharyngeal muscle cell
type: Class
subclass of: CL_0000187
subclass of: Restriction
  on property: RO_0002202
  some values from: 3E macromere

trans-tentacular muscle cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000050
    some values from: trans-tentacular muscle
subclass of: CL_0000187
subclass of: Restriction
  on property: BFO_0000050
  some values from: trans-tentacular muscle
subclass of: Restriction
  on property: RO_0002202
  some values from: 2M macromere

apical organ ctene row muscle
type: Class
subclass of: CL_0000187
subclass of: Restriction
  on property: RO_0002202
  some values from: 3E macromere

E-lineage cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: RO_0002202
    some values from: E macromere, 8 cell stage
subclass of: CL_0000000
subclass of: GO_0005623
subclass of: Restriction
  on property: RO_0002202
  some values from: E macromere, 8 cell stage

M-lineage cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: RO_0002202
    some values from: M macromere, 8 cell stage
subclass of: CL_0000000
subclass of: GO_0005623
subclass of: Restriction
  on property: RO_0002202
  some values from: M macromere, 8 cell stage

lithocyte progenitor
type: Class
subclass of: CL_0000066
subclass of: CL_0002319
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical organ floor
subclass of: Restriction
  on property: RO_0002202
  some values from: 3E macromere
has exact synonym: reserve lithocyte

adesophageal plane
type: Class
subclass of: BSPO_0000400
subclass of: Restriction
  on property: BSPO_0015005
  some values from: tentacular plane
has related synonym: esophageal plane
has related synonym: sagittal plane
comment: plane of first cleavage (Freeman 1977)

tentacular axis
type: Class
subclass of: BSPO_0000010
comment: The plane of second cleavage includes the tentacular axis

ctene row
type: Class
subclass of: UBERON_0000477
subclass of: Restriction
  on property: RO_0002473
  some values from: ctene plate
IAO_0000115: A row that is composed of individual ctene plates, which are arranged in longitudinal rows parallel to the oral–aboral axis
has exact synonym: comb row

apical organ statocyst
type: Class
equivalent class: Class
  intersection of: UBERON_0006583
  intersection of: Restriction
    on property: BFO_0000050
    some values from: apical sense organ
subclass of: UBERON_0006583
subclass of: Restriction
  on property: BFO_0000050
  some values from: apical sense organ
subclass of: Restriction
  on property: BFO_0000051
  some values from: lithocyte
comment: a balance sensor consisting of a statolith, a solid particle supported on four bundles of cilia, called "balancers", that sense its orientation

ciliated groove
type: Class
subclass of: UBERON_0006846
subclass of: Restriction
  on property: RO_0002150
  some values from: ctene row
subclass of: Restriction
  on property: RO_0002254
  some values from: e1 micromere
IAO_0000115: A groove that runs along the surface of the animal to each of the eight ctene rows
has exact synonym: ciliated furrow

tentacular plane
type: Class
subclass of: BSPO_0000400

slash quadrant
type: Class
equivalent class: Class
  intersection of: quadrant
  intersection of: Restriction
    on property: RO_0002473
    some values from: Class
      intersection of: CL_0000000
      intersection of: Restriction
        on property: RO_0002202
        some values from: EM-slash blastomere
subclass of: quadrant
subclass of: Restriction
  on property: RO_0002473
  some values from: Class
    intersection of: CL_0000000
    intersection of: Restriction
      on property: RO_0002202
      some values from: EM-slash blastomere

backslash quadrant
type: Class
equivalent class: Class
  intersection of: quadrant
  intersection of: Restriction
    on property: RO_0002473
    some values from: Class
      intersection of: CL_0000000
      intersection of: Restriction
        on property: RO_0002202
        some values from: EM-backslash blastomere
subclass of: quadrant
subclass of: Restriction
  on property: RO_0002473
  some values from: Class
    intersection of: CL_0000000
    intersection of: Restriction
      on property: RO_0002202
      some values from: EM-backslash blastomere

tentacle bulb
type: Class
subclass of: UBERON_0000479
subclass of: Restriction
  on property: BFO_0000050
  some values from: tentacle apparatus
subclass of: Restriction
  on property: RO_0002131
  some values from: tentacular plane
subclass of: Restriction
  on property: RO_0002254
  some values from: e1 micromere

polar field
type: Class
subclass of: UBERON_0000475
IAO_0000115: an ectodermal structure emanating from the apical organ along the esophageal axis.

polar field cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000050
    some values from: polar field
subclass of: CL_0000000
subclass of: GO_0005623
subclass of: Restriction
  on property: BFO_0000050
  some values from: polar field
subclass of: Restriction
  on property: RO_0002202
  some values from: m11 micromere

esophague-tentacle muscle cell
type: Class
subclass of: CL_0000187
subclass of: Restriction
  on property: RO_0002202
  some values from: 2M-backslash macromere

anal canal cell
type: Class
equivalent class: Class
  intersection of: CL_0000000
  intersection of: Restriction
    on property: BFO_0000050
    some values from: UBERON_0000159
subclass of: CL_0000000
subclass of: GO_0005623
subclass of: Restriction
  on property: BFO_0000050
  some values from: UBERON_0000159
subclass of: Restriction
  on property: RO_0002202
  some values from: 2M-backslash macromere

tentacle-apical organ muscle cell
type: Class
subclass of: CL_0000187
subclass of: Restriction
  on property: RO_0002202
  some values from: 2M-slash macromere

oral side of organism
type: Class
subclass of: UBERON_0000475

aboral part of organism
type: Class
subclass of: UBERON_0000475

tentacle apparatus
type: Class
subclass of: UBERON_0000477
subclass of: Restriction
  on property: BFO_0000051
  some values from: tentacle
subclass of: Restriction
  on property: BFO_0000051
  some values from: tentacle bulb

endodermal canal
type: Class
subclass of: UBERON_0004111

mixed E and M lineage structure
type: Class
equivalent class: Class
  intersection of: UBERON_0000061
  intersection of: Restriction
    on property: RO_0002254
    some values from: E macromere, 8 cell stage
  intersection of: Restriction
    on property: RO_0002254
    some values from: M macromere, 8 cell stage
subclass of: UBERON_0000061
subclass of: Restriction
  on property: RO_0002254
  some values from: E macromere, 8 cell stage
subclass of: Restriction
  on property: RO_0002254
  some values from: M macromere, 8 cell stage

pharyngeal muscle
type: Class
subclass of: UBERON_0001630

ctenophore blastopore
type: Class
subclass of: UBERON_0000100
comment: Genes: MlLhx1/5