fao.owl
type: Ontology
version IRI: fao.owl
imports: ncbitaxon import.owl
namespace-id-rule: * FAO:$sequence(7,0000001,9999999)$
auto-generated-by: OBO-Edit 2.3.1
date: 23:01:2020 16:30
default-namespace: fungal_anatomy_ontology
has_obo_format_version: 1.2
saved-by: midori
comment: version: $Revision: 1.7 $

definition
type: AnnotationProperty

namespace-id-rule
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

shorthand
type: AnnotationProperty

part of
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: BFO:0000050
has_obo_namespace: fungal_anatomy_ontology
id: part_of
shorthand: part_of

only in taxon
type: ObjectProperty
database_cross_reference: RO:0002160
has_obo_namespace: fungal_anatomy_ontology
id: only_in_taxon
shorthand: only_in_taxon

develops from
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: RO:0002202
has_obo_namespace: fungal_anatomy_ontology
id: develops_from
shorthand: develops_from

fungal structure
type: Class
subclass of: Restriction
  on property: only in taxon
  some values from: NCBITaxon 4751
definition: An anatomical structure that forms all or part of a fungus.
database_cross_reference: BTO:0001494
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: fungal structure ontology
id: FAO:0000001

Axiom
annotated source: fungal structure
annotated property: definition
annotated target: An anatomical structure that forms all or part of a fungus.
database_cross_reference: FAO:mah

composite structure
type: Class
subclass of: fungal structure
definition: A multicellular fungal structure composed of cells from more than one species.
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: multispecific structure
id: FAO:0000002

Axiom
annotated source: composite structure
annotated property: definition
annotated target: A multicellular fungal structure composed of cells from more than one species.
database_cross_reference: FAO:curators
database_cross_reference: FAO:mah
database_cross_reference: SGD:clt

basidium
type: Class
subclass of: sporangium
subclass of: Restriction
  on property: part of
  some values from: basidiocarp
definition: A spore-producing structure found in a Basidiomycete; formed when the terminal cell of a dikaryotic hyphal branch inflates and undergoes karyogamy and meiosis.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000003

Axiom
annotated source: basidium
annotated property: definition
annotated target: A spore-producing structure found in a Basidiomycete; formed when the terminal cell of a dikaryotic hyphal branch inflates and undergoes karyogamy and meiosis.
database_cross_reference: FAO:curators
database_cross_reference: ISBN:0471940526

ascocarp-bound ascus
type: Class
subclass of: ascus
subclass of: Restriction
  on property: part of
  some values from: ascocarp
definition: An ascus that is associated with an ascocarp.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000004

Axiom
annotated source: ascocarp-bound ascus
annotated property: definition
annotated target: An ascus that is associated with an ascocarp.
database_cross_reference: FAO:curators

obsolete
type: Class
definition: The placeholder class 'obsolete' has been made obsolete, as this is not tracked with an explicit obsoletion flag in obo format.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000005
deprecated: true

Axiom
annotated source: obsolete
annotated property: definition
annotated target: The placeholder class 'obsolete' has been made obsolete, as this is not tracked with an explicit obsoletion flag in obo format.
database_cross_reference: FAO:curators

stipe
type: Class
subclass of: multicellular fungal structure, multicellular organism
subclass of: Restriction
  on property: part of
  some values from: basidiocarp
definition: The stalk or stem that supports the cap of a mushroom. A stipe is usually composed of hyphae arrayed parallel to the long axis of the structure; in some species a stipe may be a single supporting hypha.
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: stem
id: FAO:0000006

Axiom
annotated source: stipe
annotated property: definition
annotated target: The stalk or stem that supports the cap of a mushroom. A stipe is usually composed of hyphae arrayed parallel to the long axis of the structure; in some species a stipe may be a single supporting hypha.
database_cross_reference: FAO:mah
database_cross_reference: ISBN:0471940526
database_cross_reference: SGD:clt

fruitbody
type: Class
subclass of: multicellular fungal structure, multicellular organism
definition: Any specialized structure which bears or contains sexually or asexually derived spores.
database_cross_reference: BTO:0000487
has_exact_synonym: fruiting body
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000007

Axiom
annotated source: fruitbody
annotated property: definition
annotated target: Any specialized structure which bears or contains sexually or asexually derived spores.
database_cross_reference: FAO:curators
database_cross_reference: SGD:clt

ascocarp
type: Class
subclass of: fruitbody
definition: A structure within, or at the surface of, which an ascus develops in Ascomycetes.
database_cross_reference: BTO:0002161
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000008

Axiom
annotated source: ascocarp
annotated property: definition
annotated target: A structure within, or at the surface of, which an ascus develops in Ascomycetes.
database_cross_reference: ISBN:0471940526

pileus
type: Class
subclass of: multicellular fungal structure, multicellular organism
subclass of: Restriction
  on property: part of
  some values from: basidiocarp
definition: The structure on which spore-bearing tissue is carried in sexually-derived fruiting bodies.
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: cap
id: FAO:0000009

Axiom
annotated source: pileus
annotated property: definition
annotated target: The structure on which spore-bearing tissue is carried in sexually-derived fruiting bodies.
database_cross_reference: ISBN:0471940526

sporophore
type: Class
subclass of: multicellular fungal structure, multicellular organism
definition: A multicellular anatomical structure that functions in the production of spores, which are directly borne upon or within sporogenous cells that form part of the sporophore.
database_cross_reference: GO:0075259
has_exact_synonym: fruit body
has_exact_synonym: fruitbody
has_exact_synonym: fruiting body
has_exact_synonym: spore-bearing structure
has_exact_synonym: spore-producing structure
has_exact_synonym: sporocarp
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000010

Axiom
annotated source: sporophore
annotated property: definition
annotated target: A multicellular anatomical structure that functions in the production of spores, which are directly borne upon or within sporogenous cells that form part of the sporophore.
database_cross_reference: FAO:curators

Axiom
annotated source: sporophore
annotated property: has_exact_synonym
annotated target: fruit body
database_cross_reference: FAO:doi

Axiom
annotated source: sporophore
annotated property: has_exact_synonym
annotated target: fruitbody
database_cross_reference: FAO:doi

Axiom
annotated source: sporophore
annotated property: has_exact_synonym
annotated target: fruiting body
database_cross_reference: FAO:doi

Axiom
annotated source: sporophore
annotated property: has_exact_synonym
annotated target: spore-bearing structure
database_cross_reference: FAO:doi

Axiom
annotated source: sporophore
annotated property: has_exact_synonym
annotated target: spore-producing structure
database_cross_reference: FAO:doi

Axiom
annotated source: sporophore
annotated property: has_exact_synonym
annotated target: sporocarp
database_cross_reference: FAO:doi

mycelium
type: Class
subclass of: multicellular fungal structure, multicellular organism
definition: A group or mass of discrete hyphae; the vegetative structure of many fungi.
database_cross_reference: BTO:0001436
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000011

Axiom
annotated source: mycelium
annotated property: definition
annotated target: A group or mass of discrete hyphae; the vegetative structure of many fungi.
database_cross_reference: ISBN:0471940526

basidiocarp
type: Class
subclass of: fruitbody
definition: A large fruiting body that is composed of masses of intertwined hyphal elements and produces basidia and basidiospores. The basidiocarp is characteristic of the majority of fungi of the subphylum Basidiomycotina, in which it is the site of karyogamy and meiosis. Mushrooms and toadstools are common examples.
has_alternative_id: FAO:0001024
database_cross_reference: BTO:0000114
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: mushroom
id: FAO:0000012

Axiom
annotated source: basidiocarp
annotated property: definition
annotated target: A large fruiting body that is composed of masses of intertwined hyphal elements and produces basidia and basidiospores. The basidiocarp is characteristic of the majority of fungi of the subphylum Basidiomycotina, in which it is the site of karyogamy and meiosis. Mushrooms and toadstools are common examples.
database_cross_reference: BTO:0000114
database_cross_reference: ISBN:0471940526

ascospore in ascocarp-bound ascus
type: Class
subclass of: ascospore
subclass of: Restriction
  on property: part of
  some values from: ascocarp-bound ascus
definition: An ascospore that is contained in an ascus associated with an ascocarp.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000013

Axiom
annotated source: ascospore in ascocarp-bound ascus
annotated property: definition
annotated target: An ascospore that is contained in an ascus associated with an ascocarp.
database_cross_reference: FAO:curators
database_cross_reference: FAO:mah

ascus
type: Class
subclass of: sporangium
definition: A sac-like structure containing sexual spores formed by Ascomycotina; mature asci may have little or no cytoplasm or cytoplasmic contents, and no nucleus outside of the spores.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000014

Axiom
annotated source: ascus
annotated property: definition
annotated target: A sac-like structure containing sexual spores formed by Ascomycotina; mature asci may have little or no cytoplasm or cytoplasmic contents, and no nucleus outside of the spores.
database_cross_reference: SGD:clt

free ascus
type: Class
subclass of: ascus
definition: An ascus that is not associated with an ascocarp, and is usually derived from a single cell.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000015

Axiom
annotated source: free ascus
annotated property: definition
annotated target: An ascus that is not associated with an ascocarp, and is usually derived from a single cell.
database_cross_reference: FAO:curators

ascospore in free ascus
type: Class
subclass of: ascospore
subclass of: Restriction
  on property: part of
  some values from: free ascus
definition: An ascospore that is contained in a free ascus (i.e. not associated with an ascocarp).
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000016

Axiom
annotated source: ascospore in free ascus
annotated property: definition
annotated target: An ascospore that is contained in a free ascus (i.e. not associated with an ascocarp).
database_cross_reference: FAO:curators
database_cross_reference: FAO:mah

sexual spore
type: Class
subclass of: spore
definition: A spore formed following meiosis. In some species, prospores formed by meiosis may undergo one or more rounds of mitosis before they are fully mature.
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: meiotically-derived spore
id: FAO:0000017

Axiom
annotated source: sexual spore
annotated property: definition
annotated target: A spore formed following meiosis. In some species, prospores formed by meiosis may undergo one or more rounds of mitosis before they are fully mature.
database_cross_reference: SGD:clt

unicellular structure
type: Class
subclass of: fungal structure
definition: A fungal structure that comprises a single cell. An individual cell is composed of a plasma membrane, contents internal to the plasma membrane, and any external protective or encapsulating structure.
has_exact_synonym: cell
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000018

Axiom
annotated source: unicellular structure
annotated property: definition
annotated target: A fungal structure that comprises a single cell. An individual cell is composed of a plasma membrane, contents internal to the plasma membrane, and any external protective or encapsulating structure.
database_cross_reference: FAO:curators
database_cross_reference: FAO:mah
database_cross_reference: SGD:clt

spore
type: Class
subclass of: unicellular structure
definition: A spore produced by a fungus. A spore is a differentiated form of an organism produced during or as a result of an asexual or sexual reproductive process; usually a cell with a thick cell wall that stores and protects one or more nuclei. Spores may be produced in response to, and are characteristically resistant to, adverse environmental conditions.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000019

Axiom
annotated source: spore
annotated property: definition
annotated target: A spore produced by a fungus. A spore is a differentiated form of an organism produced during or as a result of an asexual or sexual reproductive process; usually a cell with a thick cell wall that stores and protects one or more nuclei. Spores may be produced in response to, and are characteristically resistant to, adverse environmental conditions.
database_cross_reference: ISBN:0471940526

ascospore
type: Class
subclass of: sexual spore
definition: A thick-walled spore that forms in an ascus. Clusters of four or eight spores are formed in a single ascus following sexual reproduction; found in Ascomycetes.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000020

Axiom
annotated source: ascospore
annotated property: definition
annotated target: A thick-walled spore that forms in an ascus. Clusters of four or eight spores are formed in a single ascus following sexual reproduction; found in Ascomycetes.
database_cross_reference: PMID:16339736
database_cross_reference: SGD:clt

basidiospore
type: Class
subclass of: sexual spore
subclass of: Restriction
  on property: part of
  some values from: basidium
definition: A thick-walled spore formed externally on extrusions of a basidium following sexual reproduction; found in Basidiomycetes.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000021

Axiom
annotated source: basidiospore
annotated property: definition
annotated target: A thick-walled spore formed externally on extrusions of a basidium following sexual reproduction; found in Basidiomycetes.
database_cross_reference: ISBN:0471940526
database_cross_reference: ISBN:9781107079915
database_cross_reference: SGD:clt

teliospore
type: Class
subclass of: basidiospore
definition: A diploid spore with a thick, pigmented, sculpted cell wall, and extracellular peptidoglycan spikes that is formed during growth in a plant host by some Basidiomycete species, including pathogenic smut (Ustilaginales) and rust (Pucciniales) fungi.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000022

Axiom
annotated source: teliospore
annotated property: definition
annotated target: A diploid spore with a thick, pigmented, sculpted cell wall, and extracellular peptidoglycan spikes that is formed during growth in a plant host by some Basidiomycete species, including pathogenic smut (Ustilaginales) and rust (Pucciniales) fungi.
database_cross_reference: FAO:mah
database_cross_reference: PMID:27888605
database_cross_reference: PMID:8898211
database_cross_reference: SGD:clt

asexual spore
type: Class
subclass of: spore
definition: A spore formed following one or more rounds of mitosis, without meiosis.
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: mitotically-derived spore
id: FAO:0000023

Axiom
annotated source: asexual spore
annotated property: definition
annotated target: A spore formed following one or more rounds of mitosis, without meiosis.
database_cross_reference: PMID:2524423
database_cross_reference: PMID:9529886
database_cross_reference: SGD:clt

conidium
type: Class
subclass of: asexual spore
definition: An asexual, nonmotile spore formed by higher fungi. Conidia are usually made from the side or tip of specialized sporogenous cells and do not form by progressive cleavage of the cytoplasm.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000024

Axiom
annotated source: conidium
annotated property: definition
annotated target: An asexual, nonmotile spore formed by higher fungi. Conidia are usually made from the side or tip of specialized sporogenous cells and do not form by progressive cleavage of the cytoplasm.
database_cross_reference: PMID:2524423
database_cross_reference: PMID:9529886
database_cross_reference: SGD:clt

mononucleate conidium
type: Class
subclass of: conidium
definition: A conidium that has only one nucleus.
has_exact_synonym: uninucleate conidium
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000025

Axiom
annotated source: mononucleate conidium
annotated property: definition
annotated target: A conidium that has only one nucleus.
database_cross_reference: SGD:clt

Axiom
annotated source: mononucleate conidium
annotated property: has_exact_synonym
annotated target: uninucleate conidium
database_cross_reference: FAO:mah
database_cross_reference: SGD:clt

urediniospore
type: Class
subclass of: basidiospore
definition: A thin-walled spore that is formed in a uredinium and is the primary dispersal mode for rust-causing Basidiomycete fungi.
has_exact_synonym: urediospore
has_exact_synonym: uredospore
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000026

Axiom
annotated source: urediniospore
annotated property: definition
annotated target: A thin-walled spore that is formed in a uredinium and is the primary dispersal mode for rust-causing Basidiomycete fungi.
database_cross_reference: FAO:mah
database_cross_reference: PMID:21642346
database_cross_reference: PMID:26731728
database_cross_reference: PMID:30206343
database_cross_reference: SGD:clt

Axiom
annotated source: urediniospore
annotated property: has_exact_synonym
annotated target: urediospore
database_cross_reference: FAO:mah

Axiom
annotated source: urediniospore
annotated property: has_exact_synonym
annotated target: uredospore
database_cross_reference: FAO:mah

conidium of conidiophore head
type: Class
subclass of: mononucleate conidium
definition: A mononucleate spore formed on specialized cells or projections (sterigma) of a conidiophore head.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000027

Axiom
annotated source: conidium of conidiophore head
annotated property: definition
annotated target: A mononucleate spore formed on specialized cells or projections (sterigma) of a conidiophore head.
database_cross_reference: PMID:9529886
database_cross_reference: SGD:clt

microconidium
type: Class
subclass of: mononucleate conidium
definition: The smaller of two types of asexual spores formed by some fungi. An ovoid to pear-shaped asexual spore that contains very little cytoplasm and organelles, is mononucleate, and forms in vegetative hypae within a mycelium. Micronidia are extruded from the hyphal cell wall.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000028

Axiom
annotated source: microconidium
annotated property: definition
annotated target: The smaller of two types of asexual spores formed by some fungi. An ovoid to pear-shaped asexual spore that contains very little cytoplasm and organelles, is mononucleate, and forms in vegetative hypae within a mycelium. Micronidia are extruded from the hyphal cell wall.
database_cross_reference: ISBN:0471940526
database_cross_reference: PMID:8357339
database_cross_reference: SGD:clt

mononucleate macroconidium
type: Class
subclass of: mononucleate conidium
subclass of: macroconidium
definition: A macroconidium that has only one nucleus.
has_exact_synonym: uninucleate macroconidium
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000029

Axiom
annotated source: mononucleate macroconidium
annotated property: definition
annotated target: A macroconidium that has only one nucleus.
database_cross_reference: SGD:clt

Axiom
annotated source: mononucleate macroconidium
annotated property: has_exact_synonym
annotated target: uninucleate macroconidium
database_cross_reference: FAO:mah
database_cross_reference: SGD:clt

mononucleate blastoconidium
type: Class
subclass of: mononucleate macroconidium
subclass of: blastoconidium
definition: A blastoconidium that has only one nucleus.
has_exact_synonym: uninucleate blastoconidium
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000030

Axiom
annotated source: mononucleate blastoconidium
annotated property: definition
annotated target: A blastoconidium that has only one nucleus.
database_cross_reference: SGD:clt

Axiom
annotated source: mononucleate blastoconidium
annotated property: has_exact_synonym
annotated target: uninucleate blastoconidium
database_cross_reference: FAO:mah
database_cross_reference: SGD:clt

mononucleate arthroconidium
type: Class
subclass of: mononucleate macroconidium
subclass of: arthroconidium
definition: An arthroconidium that has only one nucleus.
has_exact_synonym: uninucleate arthroconidium
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000031

Axiom
annotated source: mononucleate arthroconidium
annotated property: definition
annotated target: An arthroconidium that has only one nucleus.
database_cross_reference: SGD:clt

Axiom
annotated source: mononucleate arthroconidium
annotated property: has_exact_synonym
annotated target: uninucleate arthroconidium
database_cross_reference: FAO:mah
database_cross_reference: SGD:clt

vegetative cell
type: Class
subclass of: unicellular structure
definition: A single cell that is in the vegetative growth stage of an organism's life cycle, in which metabolism and growth predominate, and is not undergoing sexual processes.
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: yeast-form
id: FAO:0000032

Axiom
annotated source: vegetative cell
annotated property: definition
annotated target: A single cell that is in the vegetative growth stage of an organism's life cycle, in which metabolism and growth predominate, and is not undergoing sexual processes.
database_cross_reference: FAO:mah
database_cross_reference: ISBN:0471940526
database_cross_reference: SGD:clt

multinucleate conidium
type: Class
subclass of: conidium
definition: A conidium that has more than one nucleus.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000033

Axiom
annotated source: multinucleate conidium
annotated property: definition
annotated target: A conidium that has more than one nucleus.
database_cross_reference: SGD:clt

lichen thallus
type: Class
subclass of: composite structure
definition: A composite structure that forms the vegetative portion of a lichen; minimally composed of at least one fungal species (the mycobiont) and an alga or cyanobacterium (the photobiont).
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000034

Axiom
annotated source: lichen thallus
annotated property: definition
annotated target: A composite structure that forms the vegetative portion of a lichen; minimally composed of at least one fungal species (the mycobiont) and an alga or cyanobacterium (the photobiont).
database_cross_reference: ISBN:0471940526
database_cross_reference: SGD:clt
database_cross_reference: https://www.britishlichensociety.org.uk/about-lichens/what-is-a-lichen
database_cross_reference: https://www.livescience.com/55008-lichens.html

multinucleate macroconidium
type: Class
subclass of: multinucleate conidium
subclass of: macroconidium
definition: A macroconidium that has more than one nucleus.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000035

Axiom
annotated source: multinucleate macroconidium
annotated property: definition
annotated target: A macroconidium that has more than one nucleus.
database_cross_reference: SGD:clt

multinucleate blastoconidium
type: Class
subclass of: multinucleate macroconidium
subclass of: blastoconidium
definition: A blastoconidium that has more than one nucleus.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000036

Axiom
annotated source: multinucleate blastoconidium
annotated property: definition
annotated target: A blastoconidium that has more than one nucleus.
database_cross_reference: SGD:clt

multinucleate arthroconidium
type: Class
subclass of: multinucleate macroconidium
subclass of: arthroconidium
definition: An arthroconidium that has more than one nucleus.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000037

Axiom
annotated source: multinucleate arthroconidium
annotated property: definition
annotated target: An arthroconidium that has more than one nucleus.
database_cross_reference: SGD:clt

macroconidium
type: Class
subclass of: conidium
definition: The larger of two types of asexual spores formed by some fungi; usually round or oblong.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000038

Axiom
annotated source: macroconidium
annotated property: definition
annotated target: The larger of two types of asexual spores formed by some fungi; usually round or oblong.
database_cross_reference: ISBN:0471940526
database_cross_reference: SGD:clt

oospore
type: Class
subclass of: asexual spore
definition: An asexual spore formed by Oomycetes; formed upon fertilization of an oosphere.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000039

Axiom
annotated source: oospore
annotated property: definition
annotated target: An asexual spore formed by Oomycetes; formed upon fertilization of an oosphere.
database_cross_reference: ISBN:0851988857
database_cross_reference: SGD:clt

zygospore
type: Class
subclass of: sexual spore
definition: A thick-walled, sexual, resting spore that forms in a zygosporangium; typical of Zygomycetes.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000040
comment: Note that "zygospore" is sometimes used to refer to both the spore and the multi-layered cell wall that encloses the spore, the zygosporangium.

Axiom
annotated source: zygospore
annotated property: definition
annotated target: A thick-walled, sexual, resting spore that forms in a zygosporangium; typical of Zygomycetes.
database_cross_reference: ISBN:0471940526
database_cross_reference: ISBN:9781107079915
database_cross_reference: SGD:clt

arthroconidium
type: Class
subclass of: macroconidium
definition: A cylindrical spore formed by development and compartmentation of hyphae; the hyphae are often supporting blastoconidiophores.
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: arthrospore
id: FAO:0000041

Axiom
annotated source: arthroconidium
annotated property: definition
annotated target: A cylindrical spore formed by development and compartmentation of hyphae; the hyphae are often supporting blastoconidiophores.
database_cross_reference: PMID:2524423
database_cross_reference: SGD:clt

blastoconidium
type: Class
subclass of: macroconidium
definition: An oblong or round asexual reproductive spore formed specifically by budding.
database_cross_reference: GO:0034299
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: blastospore
has_related_synonym: reproductive blastospore
id: FAO:0000042

Axiom
annotated source: blastoconidium
annotated property: definition
annotated target: An oblong or round asexual reproductive spore formed specifically by budding.
database_cross_reference: CGD:doi
database_cross_reference: PMID:2524423
database_cross_reference: SGD:clt

conidiophore
type: Class
subclass of: multicellular fungal structure, multicellular organism
subclass of: Restriction
  on property: develops from
  some values from: hypha
definition: A specialized hypha, often aerial, that gives rise to asexual spores known as conidia.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000043

Axiom
annotated source: conidiophore
annotated property: definition
annotated target: A specialized hypha, often aerial, that gives rise to asexual spores known as conidia.
database_cross_reference: AspGD:mcc
database_cross_reference: ISBN:0471522295
database_cross_reference: PMID:9529886

sterigma
type: Class
subclass of: fungal structure
subclass of: Restriction
  on property: part of
  some values from: conidiophore
definition: A small hyphal branch or structure which supports a sporangium, a conidium, or a basidiospore. In species with biseriate (two-layered) sterigmata such as A. nidulans, the first layer comprises primary sterigmata (metulae) and the second layer secondary sterigmata (phialides). Some species, e.g. A. fumigatus, A. oryzae, and others, have only phialides.
has_exact_synonym: sterigmata (plural)
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000044

Axiom
annotated source: sterigma
annotated property: definition
annotated target: A small hyphal branch or structure which supports a sporangium, a conidium, or a basidiospore. In species with biseriate (two-layered) sterigmata such as A. nidulans, the first layer comprises primary sterigmata (metulae) and the second layer secondary sterigmata (phialides). Some species, e.g. A. fumigatus, A. oryzae, and others, have only phialides.
database_cross_reference: AspGD:mcc
database_cross_reference: ISBN:0471522295

phialide
type: Class
subclass of: sterigma
definition: A specialized cell that buds from a metula on a developing conidiophore. Multiple phialides may bud from each metula. The phialides in turn divide asymmetrically to give rise to chains of conidia.
has_exact_synonym: secondary sterigma
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000045

Axiom
annotated source: phialide
annotated property: definition
annotated target: A specialized cell that buds from a metula on a developing conidiophore. Multiple phialides may bud from each metula. The phialides in turn divide asymmetrically to give rise to chains of conidia.
database_cross_reference: AspGD:mcc
database_cross_reference: PMID:9529886

metula
type: Class
subclass of: sterigma
definition: A specialized cell borne on a conidiophore that gives rise to phialides during the process of conidiation.
has_exact_synonym: metulae (plural)
has_exact_synonym: primary sterigma
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000046

Axiom
annotated source: metula
annotated property: definition
annotated target: A specialized cell borne on a conidiophore that gives rise to phialides during the process of conidiation.
database_cross_reference: AspGD:mcc
database_cross_reference: PMID:9529886

cleistothecium
type: Class
subclass of: ascocarp
definition: A completely closed fruiting body formed by some fungi of the Ascomycota, containing asci.
database_cross_reference: BTO:0002159
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000047

Axiom
annotated source: cleistothecium
annotated property: definition
annotated target: A completely closed fruiting body formed by some fungi of the Ascomycota, containing asci.
database_cross_reference: AspGD:mcc
database_cross_reference: ISBN:0471522295

Hulle cell
type: Class
subclass of: unicellular structure
subclass of: Restriction
  on property: develops from
  some values from: hypha
definition: A specialized multinucleate cell that originates from a nest-like aggregation of hyphae during sexual development. Hulle cells serve as nurse cells to the developing cleistothecium.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000048
comment: Note that "Hulle" is properly written with an umlaut on the "u".

Axiom
annotated source: Hulle cell
annotated property: definition
annotated target: A specialized multinucleate cell that originates from a nest-like aggregation of hyphae during sexual development. Hulle cells serve as nurse cells to the developing cleistothecium.
database_cross_reference: AspGD:mcc
database_cross_reference: PMID:19210625

conidiophore vesicle
type: Class
subclass of: fungal structure
subclass of: Restriction
  on property: part of
  some values from: conidiophore
definition: The swollen region at the apex of a conidiophore, bearing multiple metulae.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000049

Axiom
annotated source: conidiophore vesicle
annotated property: definition
annotated target: The swollen region at the apex of a conidiophore, bearing multiple metulae.
database_cross_reference: AspGD:mcc
database_cross_reference: PMID:9529886

conidiophore stalk
type: Class
subclass of: fungal structure
subclass of: Restriction
  on property: part of
  some values from: conidiophore
definition: The elongated part of the conidiophore that extends, often aerially, from the growth substrate and supports the structures that bear conidia.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000050

Axiom
annotated source: conidiophore stalk
annotated property: definition
annotated target: The elongated part of the conidiophore that extends, often aerially, from the growth substrate and supports the structures that bear conidia.
database_cross_reference: AspGD:mcc
database_cross_reference: PMID:9529886

oidium
type: Class
subclass of: asexual spore
subclass of: Restriction
  on property: part of
  some values from: hypha
definition: An asexual spore that is produced on very simple hyphae that protrude a short distance into the substrate. Oidia are borne a few at a time, and are usually presumed not to constitute the main reproductive strategy of the fungus.
created by: Maria
creation date: 2011-06-10T12:03:49Z
database_cross_reference: GO:0034297
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000051

Axiom
annotated source: oidium
annotated property: definition
annotated target: An asexual spore that is produced on very simple hyphae that protrude a short distance into the substrate. Oidia are borne a few at a time, and are usually presumed not to constitute the main reproductive strategy of the fungus.
database_cross_reference: http://www.mushroomthejournal.com/greatlakesdata/Terms/oidiu163.html

sporangium
type: Class
subclass of: sporophore
definition: A structure within which spores develop.
created by: Maria
creation date: 2011-06-10T12:06:16Z
database_cross_reference: GO:0043582
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000052

Axiom
annotated source: sporangium
annotated property: definition
annotated target: A structure within which spores develop.
database_cross_reference: FAO:curators

zygosporangium
type: Class
subclass of: sporangium
definition: A thick-walled structure that arises from a zygote formed by the fusion or conjugation of two hyphal branches, produces spores, and is characteristic of the Zygomycetes.
created by: Maria
creation date: 2011-06-10T12:14:19Z
database_cross_reference: GO:0075271
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000053

Axiom
annotated source: zygosporangium
annotated property: definition
annotated target: A thick-walled structure that arises from a zygote formed by the fusion or conjugation of two hyphal branches, produces spores, and is characteristic of the Zygomycetes.
database_cross_reference: FAO:curators
database_cross_reference: ISBN:9781107079915

aeciospore
type: Class
subclass of: asexual spore
definition: A dikaryotic spore, typically of a rust fungus, that is produced in an aecium; in heteroecious rusts, the aeciospore is a spore stage that infects the alternate host.
created by: Maria
creation date: 2011-06-10T12:18:12Z
database_cross_reference: GO:0075247
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000054

Axiom
annotated source: aeciospore
annotated property: definition
annotated target: A dikaryotic spore, typically of a rust fungus, that is produced in an aecium; in heteroecious rusts, the aeciospore is a spore stage that infects the alternate host.
database_cross_reference: FAO:curators

aplanospore
type: Class
subclass of: asexual spore
definition: A nonmotile, asexual spore, usually a sporangiospore, common in the Phycomycetes.
created by: Maria
creation date: 2011-06-10T12:21:58Z
database_cross_reference: GO:0075289
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000055

Axiom
annotated source: aplanospore
annotated property: definition
annotated target: A nonmotile, asexual spore, usually a sporangiospore, common in the Phycomycetes.
database_cross_reference: FAO:curators
database_cross_reference: answers.com:aplanospore

aecium
type: Class
subclass of: sporophore
definition: A cuplike structure of some rust fungi that contains chains of aeciospores.
created by: Maria
creation date: 2011-06-10T02:45:15Z
database_cross_reference: GO:0075267
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000056

Axiom
annotated source: aecium
annotated property: definition
annotated target: A cuplike structure of some rust fungi that contains chains of aeciospores.
database_cross_reference: FAO:curators

telium
type: Class
subclass of: sporophore
definition: A teliospore-bearing sorus of the rust fungi. A sorus is a cluster of sporangia; the telium is a pustule-like sorus that forms on the tissue of a plant infected by a rust fungus and produces teliospores.
created by: Maria
creation date: 2011-06-10T02:47:39Z
database_cross_reference: GO:0075275
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000057

Axiom
annotated source: telium
annotated property: definition
annotated target: A teliospore-bearing sorus of the rust fungi. A sorus is a cluster of sporangia; the telium is a pustule-like sorus that forms on the tissue of a plant infected by a rust fungus and produces teliospores.
database_cross_reference: FAO:curators

uredinium
type: Class
subclass of: sporophore
definition: A reddish, pustule-like structure formed by a rust fungus, in which urediniospores are produced.
created by: Maria
creation date: 2011-06-10T02:49:08Z
database_cross_reference: GO:0075279
has_exact_synonym: uredium
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000058

Axiom
annotated source: uredinium
annotated property: definition
annotated target: A reddish, pustule-like structure formed by a rust fungus, in which urediniospores are produced.
database_cross_reference: FAO:curators

Axiom
annotated source: uredinium
annotated property: has_exact_synonym
annotated target: uredium
database_cross_reference: FAO:mah

conjugation tube
type: Class
subclass of: mating cell
definition: A tubular structure that connects two individuals during conjugation, through which the transfer of genetic material can occur. The conjugation tube usually forms in response to pheromone.
created by: mariacostanzo
creation date: 2013-04-02T03:23:27Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000059

Axiom
annotated source: conjugation tube
annotated property: definition
annotated target: A tubular structure that connects two individuals during conjugation, through which the transfer of genetic material can occur. The conjugation tube usually forms in response to pheromone.
database_cross_reference: CGD:doi
database_cross_reference: http://science.yourdictionary.com/conjugation-tube

clamp cell
type: Class
subclass of: unicellular structure
subclass of: Restriction
  on property: part of
  some values from: septate hypha
definition: A hyphal cell that forms a clamp connection, a structure that separates differing nuclei, which have been obtained through mating of hyphae of differing sexual types, into distinct hyphal segments that are separated by septa (cross walls).
created by: mariacostanzo
creation date: 2013-04-02T03:28:00Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000060

Axiom
annotated source: clamp cell
annotated property: definition
annotated target: A hyphal cell that forms a clamp connection, a structure that separates differing nuclei, which have been obtained through mating of hyphae of differing sexual types, into distinct hyphal segments that are separated by septa (cross walls).
database_cross_reference: CGD:doi

fused clamp
type: Class
subclass of: septate hypha
definition: A structure produced in a dikaryotic hypha upon migration of the nuclei after mating of hyphae of differing sexual types. The clamp fuses to compartmentalize a nucleus within the subapical cell. Note: A hyphal cell that forms a clamp connection is called a "clamp cell".
created by: mariacostanzo
creation date: 2013-04-02T03:29:16Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000061

Axiom
annotated source: fused clamp
annotated property: definition
annotated target: A structure produced in a dikaryotic hypha upon migration of the nuclei after mating of hyphae of differing sexual types. The clamp fuses to compartmentalize a nucleus within the subapical cell. Note: A hyphal cell that forms a clamp connection is called a "clamp cell".
database_cross_reference: CGD:doi

unfused clamp
type: Class
subclass of: septate hypha
definition: A structure that separates the nuclei within monokaryotic hyphae into distinct hyphal segments. Monokaryotic hyphae are produced during unisexual reproduction or hyphal development of a diploid, in contrast to dikaryotic hyphae which are produced by mating of hyphae of differing sexual types.
created by: mariacostanzo
creation date: 2013-04-02T03:31:28Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000062

Axiom
annotated source: unfused clamp
annotated property: definition
annotated target: A structure that separates the nuclei within monokaryotic hyphae into distinct hyphal segments. Monokaryotic hyphae are produced during unisexual reproduction or hyphal development of a diploid, in contrast to dikaryotic hyphae which are produced by mating of hyphae of differing sexual types.
database_cross_reference: CGD:doi

titan cell
type: Class
subclass of: vegetative cell
definition: A large, highly polyploid cell that has altered capsule structure, a thickened cell wall, and increased resistance to nitrosative and oxidative stresses relative to yeast-form cells of the same species. Identified in Cryptococcus neoformans, in which the morphological transition to Tina cell form enables the fungus to evade the immune system of a mammalian host.
created by: mariacostanzo
creation date: 2013-04-03T11:15:35Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000063

Axiom
annotated source: titan cell
annotated property: definition
annotated target: A large, highly polyploid cell that has altered capsule structure, a thickened cell wall, and increased resistance to nitrosative and oxidative stresses relative to yeast-form cells of the same species. Identified in Cryptococcus neoformans, in which the morphological transition to Tina cell form enables the fungus to evade the immune system of a mammalian host.
database_cross_reference: CGD:doi
database_cross_reference: PMID:21821718
database_cross_reference: PMID:29775474

ballistospore
type: Class
subclass of: asexual spore
definition: A forcibly discharged asexual spore. With fungi, most types of basidiospores formed on basidia are discharged into the air from the tips of sterigmata.
created by: mariacostanzo
creation date: 2013-04-03T11:18:18Z
has_exact_synonym: ballistoconidium
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000064

Axiom
annotated source: ballistospore
annotated property: definition
annotated target: A forcibly discharged asexual spore. With fungi, most types of basidiospores formed on basidia are discharged into the air from the tips of sterigmata.
database_cross_reference: CGD:doi

dikaryon
type: Class
subclass of: multicellular fungal structure, multicellular organism
subclass of: Restriction
  on property: part of
  some values from: hypha
definition: A binucleate cell observed in some fungi that forms when two compatible nuclei, each originating from one of the cells, pair off after plasmogamy and cohabit without karyogamy within a hyphal compartment. The nuclei divide synchronously and are passed in pairs to newer cells or hyphal tips, which are also binucleate.
created by: mariacostanzo
creation date: 2013-04-03T11:20:00Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000065

Axiom
annotated source: dikaryon
annotated property: definition
annotated target: A binucleate cell observed in some fungi that forms when two compatible nuclei, each originating from one of the cells, pair off after plasmogamy and cohabit without karyogamy within a hyphal compartment. The nuclei divide synchronously and are passed in pairs to newer cells or hyphal tips, which are also binucleate.
database_cross_reference: CGD:doi
database_cross_reference: FAO:mah
database_cross_reference: http://en.wikipedia.org/wiki/Dikaryon

haustorium
type: Class
subclass of: hyphal tip
definition: The appendage or portion of a commensal or parasitic fungus (the hyphal tip) that penetrates the host's tissue and draws nutrients from it. Haustoria may arise from intercellular hyphae, appressoria, or external hyphae.
created by: mariacostanzo
creation date: 2013-04-03T11:21:38Z
database_cross_reference: BTO:0000515
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000066

Axiom
annotated source: haustorium
annotated property: definition
annotated target: The appendage or portion of a commensal or parasitic fungus (the hyphal tip) that penetrates the host's tissue and draws nutrients from it. Haustoria may arise from intercellular hyphae, appressoria, or external hyphae.
database_cross_reference: CGD:doi

chlamydospore
type: Class
subclass of: asexual spore
definition: A large, thick-walled resting spore with condensed cytoplasm, formed within hyphae or at hyphal tips in several kinds of fungi.
created by: mariacostanzo
creation date: 2013-04-03T11:41:14Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0000067

Axiom
annotated source: chlamydospore
annotated property: definition
annotated target: A large, thick-walled resting spore with condensed cytoplasm, formed within hyphae or at hyphal tips in several kinds of fungi.
database_cross_reference: CGD:doi
database_cross_reference: FAO:mah
database_cross_reference: PMID:16215181

hypha
type: Class
subclass of: multicellular fungal structure, multicellular organism
definition: A long, branching filamentous structure formed by a vegetatively growing fungus.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001001

Axiom
annotated source: hypha
annotated property: definition
annotated target: A long, branching filamentous structure formed by a vegetatively growing fungus.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

pseudohypha
type: Class
subclass of: multicellular fungal structure
definition: A chain of cells, formed under specific growth conditions, in which yeast-form fungal cells become elongated, bud only at the cellular pole distal to the mother cell, and fail to separate after division. Pseudohyphae exhibit constrictions at the cell-cell junctions, in contrast to true hyphae which are of more uniform diameter.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001002

Axiom
annotated source: pseudohypha
annotated property: definition
annotated target: A chain of cells, formed under specific growth conditions, in which yeast-form fungal cells become elongated, bud only at the cellular pole distal to the mother cell, and fail to separate after division. Pseudohyphae exhibit constrictions at the cell-cell junctions, in contrast to true hyphae which are of more uniform diameter.
database_cross_reference: FAO:mcc

hypha in mycelium
type: Class
subclass of: hypha
subclass of: Restriction
  on property: part of
  some values from: mycelium
definition: A hypha that forms part of a mycelium.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001003

Axiom
annotated source: hypha in mycelium
annotated property: definition
annotated target: A hypha that forms part of a mycelium.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

septate hypha in mycelium
type: Class
subclass of: hypha in mycelium
subclass of: septate hypha
definition: A hypha that is divided internally by septa, or lateral cell walls, and that exists as part of a mycelium.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001004

Axiom
annotated source: septate hypha in mycelium
annotated property: definition
annotated target: A hypha that is divided internally by septa, or lateral cell walls, and that exists as part of a mycelium.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

rhizomorph
type: Class
subclass of: mycelium
definition: A thick strand of hyphae oriented in parallel to each other, with a central channel through which nutrients are conducted.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001005

Axiom
annotated source: rhizomorph
annotated property: definition
annotated target: A thick strand of hyphae oriented in parallel to each other, with a central channel through which nutrients are conducted.
database_cross_reference: FAO:clt
database_cross_reference: ISBN:0632030771

mycelial cord
type: Class
subclass of: mycelium
definition: A thick strand of hyphae oriented in parallel to each other, with specialized channels through which nutrients are conducted.
database_cross_reference: BTO:0000660
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001006

Axiom
annotated source: mycelial cord
annotated property: definition
annotated target: A thick strand of hyphae oriented in parallel to each other, with specialized channels through which nutrients are conducted.
database_cross_reference: FAO:clt
database_cross_reference: ISBN:0632030771

stroma
type: Class
subclass of: mycelium
definition: A compact hyphal mass, on or in which fruiting bodies are formed.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001007

Axiom
annotated source: stroma
annotated property: definition
annotated target: A compact hyphal mass, on or in which fruiting bodies are formed.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

sclerotium
type: Class
subclass of: mycelium
definition: A mycelial resting body, resistant to adverse environmental conditions.
database_cross_reference: BTO:0001810
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001008

Axiom
annotated source: sclerotium
annotated property: definition
annotated target: A mycelial resting body, resistant to adverse environmental conditions.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

septate hypha
type: Class
subclass of: hypha
definition: A hypha that is divided internally by septa, or lateral cell walls.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001009

Axiom
annotated source: septate hypha
annotated property: definition
annotated target: A hypha that is divided internally by septa, or lateral cell walls.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

aseptate hypha
type: Class
subclass of: hypha
definition: A hypha whose growing portion contains multiple nuclei but is not divided internally by septa, or lateral cell walls. Septa may be present in older portions of the hypha, or at the base of reproductive structures.
database_cross_reference: FAO:mcc
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: coenocytic hypha
id: FAO:0001010

Axiom
annotated source: aseptate hypha
annotated property: definition
annotated target: A hypha whose growing portion contains multiple nuclei but is not divided internally by septa, or lateral cell walls. Septa may be present in older portions of the hypha, or at the base of reproductive structures.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip
type: Class
subclass of: fungal structure
subclass of: Restriction
  on property: part of
  some values from: hypha
definition: The growing end of a hypha.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001011

Axiom
annotated source: hyphal tip
annotated property: definition
annotated target: The growing end of a hypha.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip, hypha in mycelium
type: Class
subclass of: hyphal tip
subclass of: Restriction
  on property: part of
  some values from: hypha in mycelium
definition: The growing end of a hypha that is part of a mycelium.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001012

Axiom
annotated source: hyphal tip, hypha in mycelium
annotated property: definition
annotated target: The growing end of a hypha that is part of a mycelium.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hypha with dolipore septa, in mycelium
type: Class
subclass of: septate hypha in mycelium
subclass of: hypha with dolipore septa
definition: A hypha that is divided by dolipore septa and is part of a mycelium. A dolipore septum is a cross-wall that contains a central pore around which the septum is swollen to form a barrel-shaped structure.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001013

Axiom
annotated source: hypha with dolipore septa, in mycelium
annotated property: definition
annotated target: A hypha that is divided by dolipore septa and is part of a mycelium. A dolipore septum is a cross-wall that contains a central pore around which the septum is swollen to form a barrel-shaped structure.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

aseptate hypha in mycelium
type: Class
subclass of: hypha in mycelium
subclass of: aseptate hypha
definition: A hypha that is part of a mycelium, and whose growing portion contains multiple nuclei but is not divided internally by septa.
database_cross_reference: FAO:mcc
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: coenocytic hypha in mycelium
id: FAO:0001014

Axiom
annotated source: aseptate hypha in mycelium
annotated property: definition
annotated target: A hypha that is part of a mycelium, and whose growing portion contains multiple nuclei but is not divided internally by septa.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip, septate hypha in mycelium
type: Class
subclass of: hyphal tip, hypha in mycelium
subclass of: hyphal tip, septate hypha
subclass of: Restriction
  on property: part of
  some values from: septate hypha in mycelium
definition: The growing end of an aseptate hypha that is part of a mycelium.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001015

Axiom
annotated source: hyphal tip, septate hypha in mycelium
annotated property: definition
annotated target: The growing end of an aseptate hypha that is part of a mycelium.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip, septate hypha
type: Class
subclass of: hyphal tip
subclass of: Restriction
  on property: part of
  some values from: septate hypha
definition: The growing end of an aseptate hypha that is part of a mycelium.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001016

Axiom
annotated source: hyphal tip, septate hypha
annotated property: definition
annotated target: The growing end of an aseptate hypha that is part of a mycelium.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip, hypha with dolipore septa in mycelium
type: Class
subclass of: hyphal tip, septate hypha in mycelium
subclass of: hyphal tip, hypha with dolipore septa
subclass of: Restriction
  on property: part of
  some values from: hypha with dolipore septa, in mycelium
definition: The growing end of a hypha that is divided internally by dolipore septa and is part of a mycelium.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001017

Axiom
annotated source: hyphal tip, hypha with dolipore septa in mycelium
annotated property: definition
annotated target: The growing end of a hypha that is divided internally by dolipore septa and is part of a mycelium.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hypha with dolipore septa
type: Class
subclass of: septate hypha
definition: A hypha that is divided by dolipore septa. A dolipore septum is a cross-wall that contains a central pore around which the septum is swollen to form a barrel-shaped structure.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001018

Axiom
annotated source: hypha with dolipore septa
annotated property: definition
annotated target: A hypha that is divided by dolipore septa. A dolipore septum is a cross-wall that contains a central pore around which the septum is swollen to form a barrel-shaped structure.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip, hypha with dolipore septa
type: Class
subclass of: hyphal tip, septate hypha
subclass of: Restriction
  on property: part of
  some values from: hypha with dolipore septa
definition: The growing end of a hypha that is divided by dolipore septa. A dolipore septum is a cross-wall that contains a central pore around which the septum is swollen to form a barrel-shaped structure.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001019

Axiom
annotated source: hyphal tip, hypha with dolipore septa
annotated property: definition
annotated target: The growing end of a hypha that is divided by dolipore septa. A dolipore septum is a cross-wall that contains a central pore around which the septum is swollen to form a barrel-shaped structure.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip, aseptate hypha in mycelium
type: Class
subclass of: hyphal tip, hypha in mycelium
subclass of: hyphal tip, aseptate hypha
subclass of: Restriction
  on property: part of
  some values from: aseptate hypha in mycelium
definition: The growing end of a hypha that is part of a mycelium, and whose growing portion contains multiple nuclei but is not divided internally by septa.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001020

Axiom
annotated source: hyphal tip, aseptate hypha in mycelium
annotated property: definition
annotated target: The growing end of a hypha that is part of a mycelium, and whose growing portion contains multiple nuclei but is not divided internally by septa.
database_cross_reference: FAO:mah
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

hyphal tip, aseptate hypha
type: Class
subclass of: hyphal tip
subclass of: Restriction
  on property: part of
  some values from: aseptate hypha
definition: The growing end of a hypha that is not divided internally by septa, or cross-walls.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001021

Axiom
annotated source: hyphal tip, aseptate hypha
annotated property: definition
annotated target: The growing end of a hypha that is not divided internally by septa, or cross-walls.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0471522295

mating cell
type: Class
subclass of: unicellular structure
definition: A cell engaged in or about to engage in the process of mating; exhibits different morphology from a vegetative cell due to the action of mating pheromones.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001022

Axiom
annotated source: mating cell
annotated property: definition
annotated target: A cell engaged in or about to engage in the process of mating; exhibits different morphology from a vegetative cell due to the action of mating pheromones.
database_cross_reference: FAO:mcc

shmoo
type: Class
subclass of: mating cell
definition: An elongated, asymmetric cell formed before mating, in response to mating pheromone, by Saccharomyces species and other fungi with similar life cycles. Named after the Al Capp cartoon character, whose shape it resembles.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001023

Axiom
annotated source: shmoo
annotated property: definition
annotated target: An elongated, asymmetric cell formed before mating, in response to mating pheromone, by Saccharomyces species and other fungi with similar life cycles. Named after the Al Capp cartoon character, whose shape it resembles.
database_cross_reference: FAO:mcc
database_cross_reference: ISBN:0879693568

FAO_0001024
type: Class
IAO_0000231: IAO_0000227
IAO_0100001: basidiocarp
deprecated: true

mycelial felt
type: Class
subclass of: mycelium
definition: A mass of hyphae, usually in wood or bark; visible with the naked eye.
database_cross_reference: BTO:0000890
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001025

Axiom
annotated source: mycelial felt
annotated property: subClassOf
annotated target: mycelium
source: BTO:0000890

Axiom
annotated source: mycelial felt
annotated property: definition
annotated target: A mass of hyphae, usually in wood or bark; visible with the naked eye.
database_cross_reference: BTO:0000890

obsolete mycobiont
type: Class
definition: OBSOLETE. The fungal component of the lichen partnership, absorbing nutrients and providing structural support for the plant.
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001026
comment: This term was made obsolete because it represents a class of organism, not a fungal structure.
deprecated: true

Axiom
annotated source: obsolete mycobiont
annotated property: definition
annotated target: OBSOLETE. The fungal component of the lichen partnership, absorbing nutrients and providing structural support for the plant.
database_cross_reference: BTO:0000892

mycorrhiza
type: Class
subclass of: composite structure
definition: A composite structure formed by the symbiotic association of the mycelium of a fungus with the roots of a seed plant.
database_cross_reference: BTO:0000893
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001027

Axiom
annotated source: mycorrhiza
annotated property: definition
annotated target: A composite structure formed by the symbiotic association of the mycelium of a fungus with the roots of a seed plant.
database_cross_reference: BTO:0000893

sorocarp
type: Class
subclass of: fruitbody
definition: A fruiting body formed by some cellular slime moulds; has a stalk and a spore mass.
database_cross_reference: BTO:0001098
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001028

Axiom
annotated source: sorocarp
annotated property: subClassOf
annotated target: fruitbody
source: BTO:0001098

Axiom
annotated source: sorocarp
annotated property: definition
annotated target: A fruiting body formed by some cellular slime moulds; has a stalk and a spore mass.
database_cross_reference: BTO:0001098

pseudoplasmodium
type: Class
subclass of: fungal structure
definition: A multinucleate plasmodium-like body formed by aggregation of myxamoebae without fusion of their protoplasm.
database_cross_reference: BTO:0001139
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001029

Axiom
annotated source: pseudoplasmodium
annotated property: subClassOf
annotated target: fungal structure
source: BTO:0001139

Axiom
annotated source: pseudoplasmodium
annotated property: definition
annotated target: A multinucleate plasmodium-like body formed by aggregation of myxamoebae without fusion of their protoplasm.
database_cross_reference: BTO:0001139

substrate mycelium
type: Class
subclass of: multicellular fungal structure, multicellular organism
definition: An invasive mycelium that forms within a solid or semi-solid substrate such as wood, soil or agar.
database_cross_reference: BTO:0001562
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001030

Axiom
annotated source: substrate mycelium
annotated property: definition
annotated target: An invasive mycelium that forms within a solid or semi-solid substrate such as wood, soil or agar.
database_cross_reference: FAO:doi

aerial mycelium
type: Class
subclass of: mycelium
definition: A mycelium that forms prior to sporulation and extends aerially, or perpendicular, to its substrate.
database_cross_reference: BTO:0001562
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001031

Axiom
annotated source: aerial mycelium
annotated property: subClassOf
annotated target: mycelium
source: BTO:0001562

Axiom
annotated source: aerial mycelium
annotated property: definition
annotated target: A mycelium that forms prior to sporulation and extends aerially, or perpendicular, to its substrate.
database_cross_reference: FAO:doi

apothecium
type: Class
subclass of: ascocarp
definition: An open or expanded fruiting body that has asci contained on its exposed surface; found in lichens and actinomycetous fungi.
database_cross_reference: BTO:0002160
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001034

Axiom
annotated source: apothecium
annotated property: subClassOf
annotated target: ascocarp
source: BTO:0002160

Axiom
annotated source: apothecium
annotated property: definition
annotated target: An open or expanded fruiting body that has asci contained on its exposed surface; found in lichens and actinomycetous fungi.
database_cross_reference: BTO:0002160

gymnothecium
type: Class
subclass of: ascocarp
definition: An ascocarp that is composed of a loose network of mycelia through which ascospores filter and are released at maturity; its reproductive organs are in the form of naked asci. Found in fungi of the family Gymnoascaceae.
database_cross_reference: BTO:0002163
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001035

Axiom
annotated source: gymnothecium
annotated property: subClassOf
annotated target: ascocarp
source: BTO:0002163

Axiom
annotated source: gymnothecium
annotated property: definition
annotated target: An ascocarp that is composed of a loose network of mycelia through which ascospores filter and are released at maturity; its reproductive organs are in the form of naked asci. Found in fungi of the family Gymnoascaceae.
database_cross_reference: BTO:0002163

perithecium
type: Class
subclass of: ascocarp
subclass of: Restriction
  on property: develops from
  some values from: protoperithecium
definition: A flask-shaped fruiting body that forms a pore for the escape of spores; found in some molds and ascomycetous fungi.
database_cross_reference: BTO:0002164
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001036

Axiom
annotated source: perithecium
annotated property: subClassOf
annotated target: ascocarp
source: BTO:0002164

Axiom
annotated source: perithecium
annotated property: definition
annotated target: A flask-shaped fruiting body that forms a pore for the escape of spores; found in some molds and ascomycetous fungi.
database_cross_reference: BTO:0002164

germ tube
type: Class
subclass of: mycelium
definition: An outgrowth produced by germinating spores in certain species of spore-releasing fungi. The germ tube differentiates, grows, and undergoes mitosis to create somatic hyphae.
database_cross_reference: BTO:0004822
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001051

Axiom
annotated source: germ tube
annotated property: subClassOf
annotated target: mycelium
source: BTO:0004822

Axiom
annotated source: germ tube
annotated property: definition
annotated target: An outgrowth produced by germinating spores in certain species of spore-releasing fungi. The germ tube differentiates, grows, and undergoes mitosis to create somatic hyphae.
database_cross_reference: BTO:0004822

fungal primordium
type: Class
subclass of: fungal structure
definition: The nodule from which a mushroom develops. The primordium, less than two millimeters in diameter, resembles a pinhead, and is typically found on or near the surface of the substrate. It is formed within the mycelium, the mass of threadlike hyphae that make up the fungus. The primordium enlarges into a roundish structure of interwoven hyphae roughly resembling an egg, called a button.
database_cross_reference: BTO:0005533
has_obo_namespace: fungal_anatomy_ontology
has_related_synonym: primordium
id: FAO:0001052

Axiom
annotated source: fungal primordium
annotated property: subClassOf
annotated target: fungal structure
source: BTO:0005533

Axiom
annotated source: fungal primordium
annotated property: definition
annotated target: The nodule from which a mushroom develops. The primordium, less than two millimeters in diameter, resembles a pinhead, and is typically found on or near the surface of the substrate. It is formed within the mycelium, the mass of threadlike hyphae that make up the fungus. The primordium enlarges into a roundish structure of interwoven hyphae roughly resembling an egg, called a button.
database_cross_reference: BTO:0005533

Axiom
annotated source: fungal primordium
annotated property: has_related_synonym
annotated target: primordium
database_cross_reference: BTO:0005533

microsclerotium
type: Class
subclass of: sclerotium
definition: A very small sclerotium.
database_cross_reference: BTO:0006116
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0001053

Axiom
annotated source: microsclerotium
annotated property: subClassOf
annotated target: sclerotium
source: BTO:0006116

Axiom
annotated source: microsclerotium
annotated property: definition
annotated target: A very small sclerotium.
database_cross_reference: BTO:0006116

protoperithecium
type: Class
subclass of: ascocarp
definition: A spherical fungal structure that is formed in the sexual phase of ascomycetous fungi such as Neurospora crassa and Sordaria macrospora. A protoperithecium is formed by the enveloping of ascogonia cells by sterile hyphae, and develops into a perithecium.
created by: midori
creation date: 2018-09-21T10:54:17Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002001

Axiom
annotated source: protoperithecium
annotated property: definition
annotated target: A spherical fungal structure that is formed in the sexual phase of ascomycetous fungi such as Neurospora crassa and Sordaria macrospora. A protoperithecium is formed by the enveloping of ascogonia cells by sterile hyphae, and develops into a perithecium.
database_cross_reference: DOI:10.1007/978-3-642-00286-1_2
database_cross_reference: PMID:125266
database_cross_reference: PMID:20739093
database_cross_reference: PMID:25311923
database_cross_reference: PMID:4410944
database_cross_reference: PMID:6235211
database_cross_reference: PMID:6235212

multicellular fungal structure
type: Class
subclass of: fungal structure
definition: A fungal structure that comprises more than one cell.
created by: midori
creation date: 2019-05-03T13:33:22Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002002

Axiom
annotated source: multicellular fungal structure
annotated property: definition
annotated target: A fungal structure that comprises more than one cell.
database_cross_reference: FAO:mah

multicellular fungal structure, unicellular organism
type: Class
subclass of: multicellular fungal structure
definition: A multicellular fungal structure composed of two or more cells of a single unicellular organism.
created by: midori
creation date: 2019-05-03T14:07:29Z
has_exact_synonym: multicellular structure, unicellular organism
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002003

Axiom
annotated source: multicellular fungal structure, unicellular organism
annotated property: definition
annotated target: A multicellular fungal structure composed of two or more cells of a single unicellular organism.
database_cross_reference: FAO:doi

Axiom
annotated source: multicellular fungal structure, unicellular organism
annotated property: has_exact_synonym
annotated target: multicellular structure, unicellular organism
database_cross_reference: FAO:doi

multicellular fungal structure, multicellular organism
type: Class
subclass of: multicellular fungal structure
definition: A multicellular fungal structure composed of two or more cells of a single multicellular organism.
created by: midori
creation date: 2019-05-03T14:10:13Z
has_exact_synonym: multicellular structure, multicellular organism
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002004

Axiom
annotated source: multicellular fungal structure, multicellular organism
annotated property: definition
annotated target: A multicellular fungal structure composed of two or more cells of a single multicellular organism.
database_cross_reference: FAO:doi

Axiom
annotated source: multicellular fungal structure, multicellular organism
annotated property: has_exact_synonym
annotated target: multicellular structure, multicellular organism
database_cross_reference: FAO:doi

appressorium
type: Class
subclass of: hypha
definition: A modified hypha that forms a specialized structure used by a fungus to penetrate a target. The appressorium first presses against the substrate, usually with a flattened morphology, and then forms a penetration peg that enters the substrate via turgor pressure. Parasitic and mutualistic fungi use appressoria to enter host cells, and some saprotrophs can form appressoria to penetrate non-living substrates.
created by: midori
creation date: 2020-01-10T14:43:59Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002005

Axiom
annotated source: appressorium
annotated property: definition
annotated target: A modified hypha that forms a specialized structure used by a fungus to penetrate a target. The appressorium first presses against the substrate, usually with a flattened morphology, and then forms a penetration peg that enters the substrate via turgor pressure. Parasitic and mutualistic fungi use appressoria to enter host cells, and some saprotrophs can form appressoria to penetrate non-living substrates.
database_cross_reference: FAO:mah
database_cross_reference: PMID:15012214
database_cross_reference: PMID:15012548
database_cross_reference: PMID:22496661
database_cross_reference: PMID:26043436
database_cross_reference: PMID:31382649

monokaryotic fruitbody
type: Class
subclass of: sporophore
definition: A spore-producing structure that is formed following same-sex (self) mating. These structures are produced by Cryptococcus species in a manner similar to sexual mating except that the resulting spores are isogenic with the parental strain.
created by: midori
creation date: 2020-01-23T14:04:34Z
has_exact_synonym: haploid fruit body
has_exact_synonym: haploid fruitbody
has_exact_synonym: haploid fruiting body
has_exact_synonym: monokaryotic fruit body
has_exact_synonym: monokaryotic fruiting body
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002006

Axiom
annotated source: monokaryotic fruitbody
annotated property: definition
annotated target: A spore-producing structure that is formed following same-sex (self) mating. These structures are produced by Cryptococcus species in a manner similar to sexual mating except that the resulting spores are isogenic with the parental strain.
database_cross_reference: FAO:doi

Axiom
annotated source: monokaryotic fruitbody
annotated property: has_exact_synonym
annotated target: haploid fruit body
database_cross_reference: FAO:doi

Axiom
annotated source: monokaryotic fruitbody
annotated property: has_exact_synonym
annotated target: haploid fruitbody
database_cross_reference: FAO:doi

Axiom
annotated source: monokaryotic fruitbody
annotated property: has_exact_synonym
annotated target: haploid fruiting body
database_cross_reference: FAO:doi

Axiom
annotated source: monokaryotic fruitbody
annotated property: has_exact_synonym
annotated target: monokaryotic fruit body
database_cross_reference: FAO:doi

Axiom
annotated source: monokaryotic fruitbody
annotated property: has_exact_synonym
annotated target: monokaryotic fruiting body
database_cross_reference: FAO:doi

conidiophore foot cell
type: Class
subclass of: unicellular structure
subclass of: Restriction
  on property: part of
  some values from: septate hypha in mycelium
subclass of: Restriction
  on property: develops from
  some values from: vegetative cell
definition: A specialized cell with an enlarged cell wall that develops from a hyphal cell in a septate mycelium and swells at the aerial terminus to form a conidiophore vesicle. The aerial portion of the foot cell forms the conidiophore stalk.
created by: midori
creation date: 2020-01-23T15:25:29Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002007

Axiom
annotated source: conidiophore foot cell
annotated property: definition
annotated target: A specialized cell with an enlarged cell wall that develops from a hyphal cell in a septate mycelium and swells at the aerial terminus to form a conidiophore vesicle. The aerial portion of the foot cell forms the conidiophore stalk.
database_cross_reference: FAO:doi

conidial anastomosis tube
type: Class
subclass of: fungal structure
definition: A short, thin, unbranched tubular structure that emerges from a conidium and grows towards, and then fuses with, a similar tube growing from another conidium or conidial germling.
created by: midori
creation date: 2020-01-23T15:57:41Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002008

Axiom
annotated source: conidial anastomosis tube
annotated property: definition
annotated target: A short, thin, unbranched tubular structure that emerges from a conidium and grows towards, and then fuses with, a similar tube growing from another conidium or conidial germling.
database_cross_reference: FAO:doi
database_cross_reference: FAO:mah
database_cross_reference: PMID:16040203

spherule
type: Class
subclass of: sporangium
definition: A large, round, thick-walled structure that contains endospores such as those produced by Coccidioides species within a host.
created by: midori
creation date: 2020-01-23T16:18:39Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002009

Axiom
annotated source: spherule
annotated property: definition
annotated target: A large, round, thick-walled structure that contains endospores such as those produced by Coccidioides species within a host.
database_cross_reference: FAO:doi

sexual structure
type: Class
subclass of: fungal structure
definition: A fungal structure that develops during mating and contributes to sexual reproduction.
created by: midori
creation date: 2020-01-23T16:26:39Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002010

Axiom
annotated source: sexual structure
annotated property: definition
annotated target: A fungal structure that develops during mating and contributes to sexual reproduction.
database_cross_reference: FAO:doi
database_cross_reference: FAO:mah

mating filament
type: Class
subclass of: hypha
definition: A hypha that emerges from a yeast-form cell upon stimulation by the pheromone of a compatible mating partner. An example is observed in Cryptococcus species.
created by: midori
creation date: 2020-01-23T16:29:54Z
has_obo_namespace: fungal_anatomy_ontology
id: FAO:0002011

Axiom
annotated source: mating filament
annotated property: definition
annotated target: A hypha that emerges from a yeast-form cell upon stimulation by the pheromone of a compatible mating partner. An example is observed in Cryptococcus species.
database_cross_reference: FAO:doi