OBO-Edit 2.1.1-beta7 04:07:2013 20:24 anatomical_entity_ontology 1.2 jonathanbard anatomical_entity_ontology this version corrects the namespace and includes some flybase alt_IDs definition has_alternative_id database_cross_reference has_obo_format_version has_obo_namespace has_related_synonym anatomical_entity_ontology derives_from derives_from anatomical_entity_ontology descends descends anatomical_entity_ontology develops_from develops_from anatomical_entity_ontology endStage endStage anatomical_entity_ontology hasMapping hasMapping anatomical_entity_ontology has_part has_part anatomical_entity_ontology isReferenceForMapping isReferenceForMapping anatomical_entity_ontology part_of part_of anatomical_entity_ontology startStage startStage anatomical_entity_ontology subEventOf subEventOf anatomical_entity_ontology type type Anatomical structure composed of a single cell. EHDAA2:0003013 http://www.xspan.org/obo.owl# AEO:0000013 single-cell tissue Anatomical structure composed of a single cell. CARO:MAH The inner space within a tube. EHDAA2:0003078 UBERON:0005082 http://www.xspan.org/obo.owl# tube lumen AEO:0000078 lumen of tube The inner space within a tube. AEO:JB A small cavity bounded by an epithelium. EHDAA2:0003079 http://www.xspan.org/obo.owl# cavity of vesicle AEO:0000079 lumen of epithelial sac A small cavity bounded by an epithelium. AEO:JB A hole in a tissue. EHDAA2:0003080 http://www.xspan.org/obo.owl# AEO:0000080 foramen A hole in a tissue. AEO:JB A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified. EHDAA2:0003081 http://www.xspan.org/obo.owl# AEO:0000081 matrix-based tissue A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified. AEO:JB Ossified structure that is predominantly extracellular matrix and forms part of the support system of the body. EHDAA2:0003082 http://www.xspan.org/obo.owl# AEO:0000082 bone Ossified structure that is predominantly extracellular matrix and forms part of the support system of the body. AEO:JB Bone that is preformed in cartilage. EHDAA2:0003083 http://www.xspan.org/obo.owl# AEO:0000083 endochondral bone Bone that is preformed in cartilage. AEO:JB VAO:0000145 Bone that forms directly from mesenchyme. EHDAA2:0003085 http://www.xspan.org/obo.owl# AEO:0000085 membrane bone Bone that forms directly from mesenchyme. AEO:JB VAO:0000023 An endochondral bone that forms within tendenous or ligamentous matrix. EHDAA2:0003086 http://www.xspan.org/obo.owl# AEO:0000086 sesamoid bone An endochondral bone that forms within tendenous or ligamentous matrix. AEO:JB VAO:0000137 Dense connective tissue made primarily of type II collagen. EHDAA2:0003087 http://www.xspan.org/obo.owl# AEO:0000087 cartilage Dense connective tissue made primarily of type II collagen. AEO:JB VAO:0000040 A strap of predominantly extracellular matrix connecting two bones. EHDAA2:0003090 http://www.xspan.org/obo.owl# AEO:0000090 ligament A strap of predominantly extracellular matrix connecting two bones. AEO:JB A strap of predominantly extracellular matrix connecting a muscle to a bone. EHDAA2:0003091 http://www.xspan.org/obo.owl# AEO:0000091 tendon A strap of predominantly extracellular matrix connecting a muscle to a bone. AEO:JB A sheet of extracellular matrix. EHDAA2:0003092 http://www.xspan.org/obo.owl# AEO:0000092 aponeurosis A sheet of extracellular matrix. AEO:JB An anatomical group whose component structures share a common function. EHDAA2:0003093 FBbt:00007278 http://www.xspan.org/obo.owl# AEO:0000093 non-connected functional system An anatomical group whose component structures share a common function. AEO:JB Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system. EHDAA2:0003094f FBbt:00005155 http://www.xspan.org/obo.owl# AEO:0000094 sense organ Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system. AEO:JB Fluid anatomical entity containing cells. EHDAA2:0003095 http://www.xspan.org/obo.owl# AEO:0000095 fluid-based anatomical entity Fluid anatomical entity containing cells. AEO:JB A multi-tissue structure that produces a secretion for use elsewhere in the body. EHDAA2:0003096 http://www.xspan.org/obo.owl# AEO:0000096 gland A multi-tissue structure that produces a secretion for use elsewhere in the body. AEO:JB A gland that releases its secretion through a duct. EHDAA2:0003097 http://www.xspan.org/obo.owl# exocrine gland. AEO:0000097 ducted gland A gland that releases its secretion through a duct. AEO:JB A gland that releases its secretion directly into the bloodstream, or equivalent for an invertebrate. EHDAA2:0003098 http://www.xspan.org/obo.owl# endocrine gland. AEO:0000098 ductless gland A gland that releases its secretion directly into the bloodstream, or equivalent for an invertebrate. AEO:JB endocrine gland. AEO:JB Acellular anatomical structure whose predominant constituent is keratin. EHDAA2:0003099 http://www.xspan.org/obo.owl# AEO:0000099 keratin-based structure Acellular anatomical structure whose predominant constituent is keratin. AEO:JB Acellular anatomical structure whose predominant constituent is chitin. EHDAA2:0003100 http://www.xspan.org/obo.owl# AEO:0000100 chitin-based structure Acellular anatomical structure whose predominant constituent is chitin. AEO:JB The region of the organism associated with the visceral organs. EHDAA2:0003103 http://www.xspan.org/obo.owl# AEO:0000103 body The region of the organism associated with the visceral organs. AEO:JB The region of the body containing the brain and mouth. EHDAA2:0003106 http://www.xspan.org/obo.owl# AEO:0000106 head The region of the body containing the brain and mouth. AEO:JB The region of the body connecting the head and the body. EHDAA2:0003108 http://www.xspan.org/obo.owl# AEO:0000108 neck The region of the body connecting the head and the body. AEO:JB An external caudal extension of the body. EHDAA2:0003109 http://www.xspan.org/obo.owl# AEO:0000109 tail An external caudal extension of the body. AEO:JB Epithelium derived from mesenchyme. EHDAA2:0003111 http://www.xspan.org/obo.owl# AEO:0000111 mesothelium Epithelium derived from mesenchyme. AEO:JB An epithelial structure capable of allowing fluid flow. EHDAA2:0003114 http://www.xspan.org/obo.owl# AEO:0000114 epithelial tube An epithelial structure capable of allowing fluid flow. AEO:JB An epithelial pouch with a single opening. EHDAA2:0003115 http://www.xspan.org/obo.owl# AEO:0000115 epithelial sac An epithelial pouch with a single opening. AEO:JB A group of connected epithelial tubes with a single portal. EHDAA2:0003117 http://www.xspan.org/obo.owl# AEO:0000117 arborising epithelial duct system A group of connected epithelial tubes with a single portal. AEO:JB A network of interlinking epithelial tubes. EHDAA2:0003118 http://www.xspan.org/obo.owl# AEO:0000118 epithelial plexus A network of interlinking epithelial tubes. AEO:JB A closed epithelium with a lumen. EHDAA2:0003119 http://www.xspan.org/obo.owl# AEO:0000119 epithelial vesicle A closed epithelium with a lumen. AEO:JB A tissue composed of myoblasts or muscle cells. EHDAA2:0003122 http://www.xspan.org/obo.owl# AEO:0000122 muscle tissue A tissue composed of myoblasts or muscle cells. AEO:JB Tissue composed predominantly of neurons. EHDAA2:0003123 http://www.xspan.org/obo.owl# AEO:0000123 neural tissue Tissue composed predominantly of neurons. AEO:JB A structure whose morphology or state of differentiation will change during normal development. EHDAA2:0003125 UBERON:0005423 http://www.xspan.org/obo.owl# AEO:0000125 developing anatomical structure A structure whose morphology or state of differentiation will change during normal development. AEO:JB A post-embryonic juvenile form which will undergo metamorphosis to become the adult. EHDAA2:0003126 http://www.xspan.org/obo.owl# AEO:0000126 larva A post-embryonic juvenile form which will undergo metamorphosis to become the adult. AEO:JB An embryonic anatomical structure undergoing apoptosis. EHDAA2:0003127 http://www.xspan.org/obo.owl# AEO:0000127 apoptosing developing anatomical entity An embryonic anatomical structure undergoing apoptosis. AEO:JB An embryonic entity that displays a physiological function but whose strucuture is not yet fully formed. EHDAA2:0003129 http://www.xspan.org/obo.owl# AEO:0000129 functioning and developing structure An embryonic entity that displays a physiological function but whose strucuture is not yet fully formed. AEO:JB Embronic structure that contains stem cellsr that may contribute to its future development or maintenance or to its future development or maintenance of another tissue. EHDAA2:0003131 http://www.xspan.org/obo.owl# AEO:0000131 developing structure with stem cells Embronic structure that contains stem cellsr that may contribute to its future development or maintenance or to its future development or maintenance of another tissue. AEO:JB An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development. EHDAA2:0003132 http://www.xspan.org/obo.owl# AEO:0000132 transitional anatomical structure An embryonic anatomical entity that will turn into one or more other anatomical entities, perhaps with other anatomical entities, later in development. AEO:JB A group of neurons, usually outside the CNS, which relay neuronal signals. EHDAA2:0003135 http://www.xspan.org/obo.owl# AEO:0000135 ganglion A group of neurons, usually outside the CNS, which relay neuronal signals. AEO:JB A localised domain of predominantly neuronal tissue in the central nervous system. EHDAA2:0003136 http://www.xspan.org/obo.owl# AEO:0000136 neuronal nucleus A localised domain of predominantly neuronal tissue in the central nervous system. AEO:JB A group of neurons that provides a nervous supply. EHDAA2:0003137 http://www.xspan.org/obo.owl# AEO:0000137 nerve A group of neurons that provides a nervous supply. AEO:JB A complex of interconnecting nerves. EHDAA2:0003138 http://www.xspan.org/obo.owl# AEO:0000138 nerve plexus A complex of interconnecting nerves. AEO:JB A fasciculated bundle of neuron projections, largely or completely lacking synapses. EHDAA2:0003139 http://www.xspan.org/obo.owl# neuron projection bundle AEO:0000139 nerve fiber tract A fasciculated bundle of neuron projections, largely or completely lacking synapses. CARO:0001001 GO:0043005 neuron projection bundle GO:0043005 A tissue composed of striated muscle cells. EHDAA2:0003140 http://www.xspan.org/obo.owl# AEO:0000140 striated muscle tissue A tissue composed of striated muscle cells. AEO:JB A tissue composed of smooth muscle cells. EHDAA2:0003141 http://www.xspan.org/obo.owl# AEO:0000141 smooth muscle tissue A tissue composed of smooth muscle cells. AEO:JB A tissue composed of cardiac muscle cells. EHDAA2:0003142 http://www.xspan.org/obo.owl# AEO:0000142 cardiac muscle tissue A tissue composed of cardiac muscle cells. AEO:JB A ring of smooth muscle cells whose contraction closes the opening of the ring. EHDAA2:0003143 http://www.xspan.org/obo.owl# AEO:0000143 smooth muscle sphincter A ring of smooth muscle cells whose contraction closes the opening of the ring. AEO:JB A ring of striated muscle cells whose contraction closes the opening of the ring. EHDAA2:0003144 http://www.xspan.org/obo.owl# AEO:0000144 striated muscle sphincter A ring of striated muscle cells whose contraction closes the opening of the ring. AEO:JB A group of not-yet-terminally-differentiatied cells that can pack in three dimensions. EHDAA2:0003145 http://www.xspan.org/obo.owl# AEO:0000145 mesenchymal tissue A group of not-yet-terminally-differentiatied cells that can pack in three dimensions. AEO:JB Mesenchyme with little extracellular matrix. EHDAA2:0003146 http://www.xspan.org/obo.owl# AEO:0000146 dense mesenchyme tissue Mesenchyme with little extracellular matrix. AEO:JB Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes. EHDAA2:0003147 http://www.xspan.org/obo.owl# AEO:0000147 cartilagenous condensation Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes. AEO:JB GO:curator VAO:0000092 A delimited region of dense mesenchyme within looser mesenchyme. EHDAA2:0003148 http://www.xspan.org/obo.owl# AEO:0000148 developing mesenchymal condensation A delimited region of dense mesenchyme within looser mesenchyme. AEO:JB A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become myoblasts. EHDAA2:0003149 http://www.xspan.org/obo.owl# AEO:0000149 pre-muscle condensation A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become myoblasts. AEO:JB A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts. EHDAA2:0003150 http://www.xspan.org/obo.owl# AEO:0000150 pre-cartilage condensation A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts. AEO:JB Mesenchyme whose cells are embedded in obvious amounts fo extracellular matrix. EHDAA2:0003151 http://www.xspan.org/obo.owl# AEO:0000151 loose mesenchyme tissue Mesenchyme whose cells are embedded in obvious amounts fo extracellular matrix. AEO:JB Mesenchymal cells that are migrating. EHDAA2:0003152 http://www.xspan.org/obo.owl# AEO:0000152 migrating mesenchyme population Mesenchymal cells that are migrating. AEO:JB Multi-tissue mesenchymal structure one of whose parts contains stem cells that can replace other parts. EHDAA2:0003153 http://www.xspan.org/obo.owl# AEO:0000153 mesenchymal tissue with stem cells Multi-tissue mesenchymal structure one of whose parts contains stem cells that can replace other parts. AEO:JB The collection of structures that form the exxtenal covering of the organism. EHDAA2:0003154 http://www.xspan.org/obo.owl# AEO:0000154 organism surfacef The collection of structures that form the exxtenal covering of the organism. AEO:JB A furrow or an incomplete tube. EHDAA2:0003161 UBERON:0006846 ZFA:0001690 http://www.xspan.org/obo.owl# AEO:0000161 groove A furrow or an incomplete tube. AEO:JB A raised strip of tissue. EHDAA2:0003162 http://www.xspan.org/obo.owl# AEO:0000162 ridge A raised strip of tissue. AEO:JB The rigid support system for the body. EHDAA2:0003168 http://www.xspan.org/obo.owl# AEO:0000168 skeletal system The rigid support system for the body. AEO:JB VAO:0000027 That part of the conceptus that will form the organism. EHDAA2:0003169 UBERON:0000922 ZFA:0001105 http://www.xspan.org/obo.owl# AEO:0000169 embryo That part of the conceptus that will form the organism. AEO:JB Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue. EHDAA2:0003170 http://www.xspan.org/obo.owl# AEO:0000170 anlage Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue. AEO:JB Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue. EHDAA2:0003171 http://www.xspan.org/obo.owl# AEO:0000171 primordium Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue. AEO:JB Appendage of an animal used for locomotion or grasping. EHDAA2:0003172 http://www.xspan.org/obo.owl# AEO:0000172 limb Appendage of an animal used for locomotion or grasping. AEO:JB Multicellular anatomical structure with largely bona fide boundary that extends outwards from or is part of the organism surface and transduces some sensory stimulus to the nervous system. EHDAA2:0003173 http://www.xspan.org/obo.owl# AEO:0000173 surface sense organ Multicellular anatomical structure with largely bona fide boundary that extends outwards from or is part of the organism surface and transduces some sensory stimulus to the nervous system. AEO:JB A part of the body present only in a specific gender. EHDAA2:0003174 http://www.xspan.org/obo.owl# AEO:0000174 gender-specific anatomical structure A part of the body present only in a specific gender. AEO:JB A part of the body present only in males. EHDAA2:0003175 http://www.xspan.org/obo.owl# AEO:0000175 male anatomical structure A part of the body present only in males. AEO:JB A part of the body present only in females. EHDAA2:0003176 http://www.xspan.org/obo.owl# AEO:0000176 female anatomical structure A part of the body present only in females. AEO:JB A part of the body present only in hermaphrodites. EHDAA2:0003177 http://www.xspan.org/obo.owl# AEO:0000177 hermaphrodite anatomical structure A part of the body present only in hermaphrodites. AEO:JB A flexible joint between two bones that is made of unossified connective tissue. EHDAA2:0003178 http://www.xspan.org/obo.owl# AEO:0000178 fibrous joint A flexible joint between two bones that is made of unossified connective tissue. AEO:JB The articular cartilage covering of the region of bone within a synoval joint. EHDAA2:0003179 http://www.xspan.org/obo.owl# AEO:0000179 joint-associated cartilage The articular cartilage covering of the region of bone within a synoval joint. AEO:JB Cartilage that may provide the template for an endochondral bone or that may be a disinct entity in the skeleton. EHDAA2:0003180 http://www.xspan.org/obo.owl# AEO:0000180 non-joint-associated cartilage Cartilage that may provide the template for an endochondral bone or that may be a disinct entity in the skeleton. AEO:JB The epithelial membrane between bone ends that forms the lateral borders of the synovial cavity and secretes synovial fluid. EHDAA2:0003181 http://www.xspan.org/obo.owl# AEO:0000181 synovial membrane The epithelial membrane between bone ends that forms the lateral borders of the synovial cavity and secretes synovial fluid. AEO:JB A joint connecting two or more bones with cartilage at the bone ends and a synovial membrane that secretes synovial fluid conecting the bones and sealing the synovial cavity. EHDAA2:0003183 http://www.xspan.org/obo.owl# AEO:0000183 synovial joint A joint connecting two or more bones with cartilage at the bone ends and a synovial membrane that secretes synovial fluid conecting the bones and sealing the synovial cavity. AEO:JB A component of the exoskeleton. EHDAA2:0003185 http://www.xspan.org/obo.owl# AEO:0000185 exoskeletal tissue A component of the exoskeleton. AEO:JB The cavity within the body that contains the visceral organs. EHDAA2:0003186 UBERON:0002323 http://www.xspan.org/obo.owl# AEO:0000186 body cavity The cavity within the body that contains the visceral organs. AEO:JB Multi-tissue structure one of whose parts contains stem cells that can replace other parts. EHDAA2:0003187 http://www.xspan.org/obo.owl# AEO:0000187 multi-tissue structure with stem cells Multi-tissue structure one of whose parts contains stem cells that can replace other parts. AEO:JB An acellular fluid portion of organism substance that is produced by the organism for some non-waste purpose. EHDAA2:0003188 http://www.xspan.org/obo.owl# AEO:0000188 acellular fluid anatomical entity An acellular fluid portion of organism substance that is produced by the organism for some non-waste purpose. AEO:JB Multi-tissue epithelial structure one of whose parts contains stem cells that can replace other parts. EHDAA2:0003189 http://www.xspan.org/obo.owl# AEO:0000189 epithelial tissue with stem cells Multi-tissue epithelial structure one of whose parts contains stem cells that can replace other parts. AEO:JB Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. EHDAA2:0003010 http://www.xspan.org/obo.owl# anatomical surface. AEO:0000192 anatomical surface feature true Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. CARO:MAH Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs. EHDAA2:0003193 UBERON:0000026 http://www.xspan.org/obo.owl# AEO:0000193 appendage Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs. CARO:MAH All the products of the fertilized egg. EHDAA2:0003205 http://www.xspan.org/obo.owl# AEO:0000194 conceptus All the products of the fertilized egg. AEO:JB The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism. http://www.xspan.org/obo.owl# AEO:0000195 extraembryonic component The part of the conceptus that may be lost before birth or will be discarded at birth, or when the embryo becomes an independent organism. AEO:JB An anatomical structure present in the larval form of an animal. HDAA2:0003126 http://www.xspan.org/obo.owl# AEO:0000196 larval anatomical structure An anatomical structure present in the larval form of an animal. AEO:JB A head-associated surface sense organ. http://www.xspan.org/obo.owl# AEO:0000198 antenna A head-associated surface sense organ. CARO:MAH A membranous structure with more than one cell type, one or more of which secretes mucus, that lines body passages which communicate with the exterior. EHDAA2:0003234 http://www.xspan.org/obo.owl# mucosa AEO:0000199 mucous membrane A membranous structure with more than one cell type, one or more of which secretes mucus, that lines body passages which communicate with the exterior. AEO:JB An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers. EHDAA2:0003233 http://www.xspan.org/obo.owl# AEO:0000200 regenerating anatomical structure An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers. AEO:JB A group of neurons that provides a nervous response from a tissue. EHDAA2:0003200 http://www.xspan.org/obo.owl# AEO:0000201 afferent nerve A group of neurons that provides a nervous response from a tissue. AEO:JB A group of neurons that provides a nervous signal to a tissue. EHDAA2:0003231 http://www.xspan.org/obo.owl# AEO:0000202 efferent nerve A group of neurons that provides a nervous signal to a tissue. AEO:JB An anatomical entity consisting of a single or a few multinucleated structures. HDAA2:0003248 http://www.xspan.org/obo.owl# AEO:0000203 syncytium An anatomical entity consisting of a single or a few multinucleated structures. AEO.:JB An roughly circular indentation in a surface. EHDAA2:003249 http://www.xspan.org/obo.owl# AEO:0000204 pit An roughly circular indentation in a surface. AEO:JB A roughly circular bulge in a surface. EHDAA2:0003250 http://www.xspan.org/obo.owl# AEO:0000205 protuberance A roughly circular bulge in a surface. AEO:JB An epithelium that extends its surface area by peripheral movement. EHDAA2:0003251 http://www.xspan.org/obo.owl# AEO:0000206 migrating epithelium An epithelium that extends its surface area by peripheral movement. AEO:JB An epithelial tube that transports blood. EHDAA2:0003252 http://www.xspan.org/obo.owl# AEO:0000207 blood vessel An epithelial tube that transports blood. AEO:JB An epithelial tube that transports blood away from the heart. EHDAA2:0003253 http://www.xspan.org/obo.owl# AEO:0000208 artery An epithelial tube that transports blood away from the heart. AEO:JB An epithelial tube that transports blood towards the heart. EHDAA2:0003254 http://www.xspan.org/obo.owl# AEO:0000209 vein An epithelial tube that transports blood towards the heart. AEO:JB Anatomical group whose component structures are arranged in a row. FBbt:00100152 HDAA2:0003255 http://www.xspan.org/obo.owl# AEO:0000210 row Anatomical group whose component structures are arranged in a row. DBft:DOS The sum of all the anlagen and primordia that will develop into a single functional system. FBbt:0004003 HDAA2:0003256 http://www.xspan.org/obo.owl# AEO:0000211 non-connected developing functional system The sum of all the anlagen and primordia that will develop into a single functional system. FBbt:DOS The mesenchymal derivative of a somite that will migrate to surround the neural tube and form vertebrae. EHDAA2:0003257 http://www.xspan.org/obo.owl# AEO:0000212 sclerotome The mesenchymal derivative of a somite that will migrate to surround the neural tube and form vertebrae. AEO:JB A delimited region of osteoblasts representing the early stages of bone formation. EHDAA2:0003258 http://www.xspan.org/obo.owl# AEO:0000213 bone condensation A delimited region of osteoblasts representing the early stages of bone formation. AEO:JB The bilaminar epithelium formed from the myotome and dermatome. EHDAA2:0003259 http://www.xspan.org/obo.owl# AEO:0000214 dermomyotome The bilaminar epithelium formed from the myotome and dermatome. AEO:JB A volume that is mainly bounded but has an opening to another cavity or to the outside. EHDAA2:0003078 http://www.xspan.org/obo.owl# AEO:0000215 open cavity A volume that is mainly bounded but has an opening to another cavity or to the outside. JB:AEO A cord of epithelial cells without a lumen and usually several cells thick. EHDAA2:0004052 http://www.xspan.org/obo.owl# AEO:0000216 epithelial cord A cord of epithelial cells without a lumen and usually several cells thick. JB:AEO A simple coherent tissue or a localized population of similar cells that are actively migrating. EHDAA2:0004053 http://www.xspan.org/obo.owl# AEO:0000217 migrating developing tissue A simple coherent tissue or a localized population of similar cells that are actively migrating. JB:AEO A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. EHDAA2:0003112 http://www.xspan.org/obo.owl# AEO:0000218 developing epithelial placode A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. JB:AEO A network of interlinked veins. EHDAA2:0004112 http://www.xspan.org/obo.owl# AEO:0000219 vascular plexus A network of interlinked veins. JB:AEO Each of a set of hard, bony enamel-coated structures in the jaws of most vertebrates, used for biting and chewing. EHDAA2:0004605 http://www.xspan.org/obo.owl# AEO:0000220 tooth Each of a set of hard, bony enamel-coated structures in the jaws of most vertebrates, used for biting and chewing. JB:AEO An anatomical space with at least one opening to another space or the exterior. http://www.xspan.org/obo.owl# AEO:0000221 open anatomical space An anatomical space with at least one opening to another space or the exterior. JB:AEO An anatomical space with no opening to another space or to the exterior. http://www.xspan.org/obo.owl# AEO:0000222 enclosed anatomical space An anatomical space with no opening to another space or to the exterior. JB:AEO Tissue that is predominantly made of fat cells. EHDAA2:0003120 http://www.xspan.org/obo.owl# AEO:0000493 fat tissue Tissue that is predominantly made of fat cells. AEO:JB A ganglion containing sensory neurons. http://www.xspan.org/obo.owl# AEO:0001000 sensory ganglion A ganglion containing sensory neurons. JB:AEO A ganglion that is part of the autonomic nervous system. http://www.xspan.org/obo.owl# AEO:0001001 autonomic ganglion A ganglion that is part of the autonomic nervous system. JB:AEO A localized group of blood capillaries. http://www.xspan.org/obo.owl# AEO:0001002 capillary bed A localized group of blood capillaries. JB:AEO An acellular structure typically composed of collagen, glycoproteins and glycosaminoglycans. http://www.xspan.org/obo.owl# AEO:0001003 acellular extracellular matrix An acellular structure typically composed of collagen, glycoproteins and glycosaminoglycans. JB:AEO A flattened appendage on a marine animal. http://www.xspan.org/obo.owl# AEO:0001004 fin A flattened appendage on a marine animal. JB:AEO VAO:0000099 A non-cellular substance released by a cell, gland or tissue. UBERON:0000456 http://www.xspan.org/obo.owl# AEO:0001005 secretion A non-cellular substance released by a cell, gland or tissue. JB:AEO Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body. UBERON:0000174 http://www.xspan.org/obo.owl# AEO:0001006 excreta Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body. JB:AEO An epithelium within an embryo or larva that is undergoing a major developmental change. EHDAA2:0004653 http://www.xspan.org/obo.owl# AEO:0001007 developing epithelium An epithelium within an embryo or larva that is undergoing a major developmental change. AEO:JB An embryonic or larval epithelium that is committed to form part of the nervous system. EHDAA2:0004654 http://www.xspan.org/obo.owl# AEO:0001008 neuroepithelium An embryonic or larval epithelium that is committed to form part of the nervous system. AEO:JB An epithelium that is undergoing proliferation to provide large numbers of neuronal cells. EHDAA2:0004655 http://www.xspan.org/obo.owl# AEO:0001009 proliferating neuroepithelium An epithelium that is undergoing proliferation to provide large numbers of neuronal cells. AEO:JB A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells. EHDAA2:0004656 http://www.xspan.org/obo.owl# AEO:0001010 differentiating neuroepithelium A neuroepithelium some of whose cells are undergoing terminal differentiation to become neuronal cells. AEO:JB Neuronal tissue composed predominantly of axons. EHDAA2:0004657 http://www.xspan.org/obo.owl# AEO:0001011 neuronal white matter Neuronal tissue composed predominantly of axons. AEO:JB A neuronal tissue composed predominantly of nerve bodies and neuronal support cells. EHDAA2:0004658 http://www.xspan.org/obo.owl# AEO:0001012 neuronal grey matter A neuronal tissue composed predominantly of nerve bodies and neuronal support cells. AEO:JB An extended columnar domain of predominantly neuronal tissue in the central nervous system. EHDAA2:0004659 http://www.xspan.org/obo.owl# AEO:0001013 neuronal column An extended columnar domain of predominantly neuronal tissue in the central nervous system. AEO:JB A compact group of cells differentiating to become a ganglion or a neuronal nucleus. EHDAA2:0004660 http://www.xspan.org/obo.owl# AEO:0001014 differentiating neuronal condensation A compact group of cells differentiating to become a ganglion or a neuronal nucleus. AEO:JB An epithelial ball that forms from paraxial mesoderm. http://www.xspan.org/obo.owl# AEO:0001015 somite An epithelial ball that forms from paraxial mesoderm. JB:AEO A mesenchyme-derived anatomical entity undergoing a transtion to become another structure. http://www.xspan.org/obo.owl# AEO:0001016 developing mesenchymal structure A mesenchyme-derived anatomical entity undergoing a transtion to become another structure. AEO:JB A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells. http://www.xspan.org/obo.owl# AEO:0001017 dermatome A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells. AEO:JB A transitional population of migrating mesenchymal cells that derive from somites and that will become muscle cells. http://www.xspan.org/obo.owl# AEO:0001018 myotome A transitional population of migrating mesenchymal cells that derive from somites and that will become muscle cells. AEO:JB A germ cell population that has not undergone meiosis. http://www.xspan.org/obo.owl# AEO:0001019 developing germ cell population A germ cell population that has not undergone meiosis. AEO:JB A population of cells that are predominantly immature or mature germ cells. http://www.xspan.org/obo.owl# AEO:0001020 reproductive cell population A population of cells that are predominantly immature or mature germ cells. AEO:JB A group of cells capable of regenerating themselves and also of producing one or more populations of differentiated cells. http://www.xspan.org/obo.owl# AEO:0001021 stem cell population A group of cells capable of regenerating themselves and also of producing one or more populations of differentiated cells. AEO:JB Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. EHDAA2:0003000 UBERON:0001062 http://www.xspan.org/obo.owl# CARO:0000000 anatomical entity Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. CARO:MAH Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. EHDAA2:0003003 UBERON:0000061 http://www.xspan.org/obo.owl# CARO:0000003 anatomical structure Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. CARO:MAH Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. EHDAA2:0003004 UBERON:0000463 http://www.xspan.org/obo.owl# portion of organism substance CARO:0000004 non-tissue substance Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. CARO:MAH Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. EHDAA2:0003005 UBERON:0000464 http://www.xspan.org/obo.owl# CARO:0000005 anatomical space Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. CARO:MAH Anatomical entity that has mass. EHDAA2:0003006 UBERON:0000465 http://www.xspan.org/obo.owl# CARO:0000006 material anatomical entity Anatomical entity that has mass. CARO:MAH Anatomical entity that has no mass. EHDAA2:0003007 UBERON:0000466 http://www.xspan.org/obo.owl# CARO:0000007 immaterial anatomical entity Anatomical entity that has no mass. CARO:MAH Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. EHDAA2:0003008 http://www.xspan.org/obo.owl# CARO:0000008 anatomical line Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. CARO:MAH Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface. EHDAA2:0003009 http://www.xspan.org/obo.owl# CARO:0000009 anatomical point Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface. CARO:MAH Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. EHDAA2:0003192 UBERON:0000015 http://www.xspan.org/obo.owl# CARO:0000010 anatomical surface Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. CARO:MAH Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity. EHDAA2:0003011 http://www.xspan.org/obo.owl# CARO:0000011 anatomical system Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity. CARO:MAH Anatomical structure that is an individual member of a species and consists of more than one cell. EHDAA2:0003191 UBERON:0000468 http://www.xspan.org/obo.owl# CARO:0000012 multi-cellular organism Anatomical structure that is an individual member of a species and consists of more than one cell. JB:DEF Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. http://www.xspan.org/obo.owl# CARO:0000013 cell Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. CARO:MAH Anatomical structure that is a direct part of the cell. http://www.xspan.org/obo.owl# CARO:0000014 cell component Anatomical structure that is a direct part of the cell. CARO:MAH Multi-tissue structure that is part of a compound organ. EHDAA2:0003019 http://www.xspan.org/obo.owl# CARO:0000019 compound organ component Multi-tissue structure that is part of a compound organ. CARO:MAH Multi-tissue structure that is not part of a compound organ. EHDAA2:0003190 http://www.xspan.org/obo.owl# CARO:0000021 simple organ Multi-tissue structure that is not part of a compound organ. CARO:MAH Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. EHDAA2:0003024 http://www.xspan.org/obo.owl# CARO:0000024 compound organ Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. CARO:MAH Gonochoristic organism that can produce male gametes. http://www.xspan.org/obo.owl# CARO:0000027 male organism Gonochoristic organism that can produce male gametes. CARO:MAH Gonochoristic organism that can produce female gametes. http://www.xspan.org/obo.owl# CARO:0000028 female organism Gonochoristic organism that can produce female gametes. CARO:MAH Multi-cellular organism that can produce both male and female gametes. http://www.xspan.org/obo.owl# dioecious organism CARO:0000029 hermaphroditic organism Multi-cellular organism that can produce both male and female gametes. CARO:MAH Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. EHDAA2:0003032 UBERON:0000475 http://www.xspan.org/obo.owl# CARO:0000032 organism subdivision Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. CARO:MAH Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. EHDAA2:0003040 UBERON:0000476 http://www.xspan.org/obo.owl# CARO:0000040 acellular anatomical structure Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. CARO:MAH Anatomical group that has its parts adjacent to one another. Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells or body part subdivisions that are adjacent to, or continuous with one another; does not constitute an organ, organ system or organ system subdivision, or body part or body part subdivision. EHDAA2:0003041 UBERON:0000477 http://www.xspan.org/obo.owl# CARO:0000041 anatomical cluster Anatomical group that has its parts adjacent to one another. Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells or body part subdivisions that are adjacent to, or continuous with one another; does not constitute an organ, organ system or organ system subdivision, or body part or body part subdivision. CARO:MAH Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. EHDAA2:0003042 UBERON:0000478 http://www.xspan.org/obo.owl# CARO:0000042 extraembryonic structure Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. CARO:MAH Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. EHDAA2:0003043 UBERON:0000479 http://www.xspan.org/obo.owl# portion of tissue. CARO:0000043 simple tissue Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. CARO:MAH Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex. http://www.xspan.org/obo.owl# consecutive hermaphroditic organism CARO:0000045 sequential hermaphroditic organism Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex. CARO:MAH Hermaphroditic organism that produces both male and female gametes at the same time. http://www.xspan.org/obo.owl# serially hermaphroditic organism CARO:0000046 synchronous hermaphroditic organism Hermaphroditic organism that produces both male and female gametes at the same time. CARO:MAH Multi-cellular organism that has male and female sexes. http://www.xspan.org/obo.owl# monoecious organism CARO:0000048 gonochoristic organism Multi-cellular organism that has male and female sexes. CARO:MAH Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex. http://www.xspan.org/obo.owl# CARO:0000049 protandrous hermaphroditic organism Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex. CARO:MAH Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex. http://www.xspan.org/obo.owl# CARO:0000050 protogynous hermaphroditic organism Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex. CARO:MAH Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. EHDAA2:0003054 UBERON:0000480 http://www.xspan.org/obo.owl# CARO:0000054 anatomical group Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. CARO:MAH Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. EHDAA2:0003055 UBERON:0000481 http://www.xspan.org/obo.owl# CARO:0000055 multi-tissue structure Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. CARO:MAH Anatomical space that is part of a cell. http://www.xspan.org/obo.owl# CARO:0000062 cell space Anatomical space that is part of a cell. CARO:mah Multi-cellular organism that does not produce gametes. http://www.xspan.org/obo.owl# CARO:0000063 asexual organism Multi-cellular organism that does not produce gametes. CARO:MAH Cell that is an individual member of a species. http://www.xspan.org/obo.owl# CARO:0000064 single cell organism Cell that is an individual member of a species. CARO:MAH Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. EHDAA2:0003065 http://www.xspan.org/obo.owl# CARO:0000065 basal lamina Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. CARO:MAH Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. EHDAA2:0003066 http://www.xspan.org/obo.owl# CARO:0000066 epithelium Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. CARO:MAH Unilaminar epithelium that consists of a single layer of cuboidal cells. EHDAA2:0003067 http://www.xspan.org/obo.owl# CARO:0000067 simple cuboidal epithelium Unilaminar epithelium that consists of a single layer of cuboidal cells. CARO:MAH Unilaminar epithelium that consists of a single layer of columnar cells. EHDAA2:0003068 http://www.xspan.org/obo.owl# CARO:0000068 columnar epithelium Unilaminar epithelium that consists of a single layer of columnar cells. CARO:MAH Epithelium that consists of more than one layer of epithelial cells. EHDAA2:0003069 http://www.xspan.org/obo.owl# CARO:0000069 multilaminar epithelium Epithelium that consists of more than one layer of epithelial cells. CARO:MAH Unilaminar epithelium that consists of a single layer of squamous cells. EHDAA2:0003070 http://www.xspan.org/obo.owl# CARO:0000070 simple squamous epithelium Unilaminar epithelium that consists of a single layer of squamous cells. CARO:MAH Epithelium that consists of epithelial cells not arranged in one ore more layers. EHDAA2:0003071 http://www.xspan.org/obo.owl# CARO:0000071 atypical epithelium Epithelium that consists of epithelial cells not arranged in one ore more layers. CARO:MAH Compound organ that contains one or more macroscopic anatomical spaces. EHDAA2:0003072 http://www.xspan.org/obo.owl# CARO:0000072 cavitated compound organ Compound organ that contains one or more macroscopic anatomical spaces. CARO:MAH Epithelium that consists of a single layer of epithelial cells. EHDAA2:0003073 http://www.xspan.org/obo.owl# CARO:0000073 unilaminar epithelium Epithelium that consists of a single layer of epithelial cells. CARO:MAH Compound organ that does not contain macroscopic anatomical spaces. EHDAA2:0003074 http://www.xspan.org/obo.owl# CARO:0000074 solid compound organ Compound organ that does not contain macroscopic anatomical spaces. CARO:MAH Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. http://www.xspan.org/obo.owl# CARO:0000077 epithelial cell Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. CARO:MAH CL:0000066 Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. cell CL:0000000 cell Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. CARO:mah cell CL:0000003 cell in vivo cell CL:0000012 cell by class A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte. cell nurse cell CL:0000015 male germ cell A germline cell that contributes to the development of the oocyte by transferring cytoplasm directly to oocyte. GOC:tfm PMID:15848391 Female germ cell is a germ cell that supports female gamete production. cell CL:0000021 female germ cell Female germ cell is a germ cell that supports female gamete production. GOC:tfm PMID:11023867 PMID:20454446 cell CL:0000029 neuron neural crest derived cell CL:0000031 neuroblast A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. cell CL:0000034 stem cell A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. GOC:tfm MESH:A.11.872 A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. cell CL:0000039 Originally this term had some plant germ line cell children germ line cell A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring. GOC:tfm ISBN:0721662544 A precursor cell with a limited number of potential fates. cell blast cell CL:0000055 non-terminally differentiated cell A precursor cell with a limited number of potential fates. SANBI:mhl A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. cell CL:0000057 fibroblast A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. ISBN:0517223651 MESH:A.11.329.228 http://63.198.234.228/OpenFMA/Fibroblast.html An immature cartilage-producing cell found in growing cartilage. cell chrondoplast CL:0000058 chondroblast An immature cartilage-producing cell found in growing cartilage. GOC:tfm ISBN:0618947256 A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. cell CL:0000062 osteoblast A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone. MESH:A.11.329.629 A classification of cells by their microscopic appearance. cell CL:0000063 cell by histology A classification of cells by their microscopic appearance. FB:ma GOC:tfm A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. cell Epitheliocyte CL:0000066 epithelial cell A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina. FB:ma GOC:tfm MESH:A.11.436 cell CL:0000068 duct epithelial cell An endothelial cell that lines the vasculature. cell Cuboidal endothelial cell of vascular tree CL:0000071 blood vessel endothelial cell An endothelial cell that lines the vasculature. GOC:tfm cell CL:0000075 columnar/cuboidal epithelial cell cell CL:0000076 squamous epithelial cell cell CL:0000079 stratified epithelial cell A cell which moves among different tissues of the body, via blood, lymph, or other medium. cell CL:0000080 circulating cell A cell which moves among different tissues of the body, via blood, lymph, or other medium. GOC:add A cell found predominately in the blood. cell CL:0000081 blood cell A cell found predominately in the blood. GOC:add GOC:tfm cell CL:0000095 neuron associated cell Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. cell CL:0000099 interneuron Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions. GOC:tfm MESH:A.08.663.358 Any neuron having a sensory function; an afferent neuron conveying sensory impulses. cell CL:0000101 sensory neuron Any neuron having a sensory function; an afferent neuron conveying sensory impulses. ISBN:0721662544 A neruon whose cell body is within an autonomic ganglion. cell CL:0000107 autonomic neuron A neruon whose cell body is within an autonomic ganglion. GOC:tfm A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. cell neuroglia neuroglial cell CL:0000125 glial cell A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons. MESH:A.08.637 A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together. cell Macrogliocyte CL:0000126 macroglial cell A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together. GOC:tfm ISBN:0721662544 A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. cell astrocytic glia CL:0000127 astrocyte A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury. GOC:_tfm GOC:dsd MESH:A.08.637.200 MESH:D001253 PMID:11746784 PMID:12162730 PMID:12898703 PMID:20942978 A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. cell oligodendroglia CL:0000128 oligodendrocyte A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system. MESH:A.08.637.600 A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive. cell MF.microglia.CNS brain macrophage brain-resident macrophage hortega cells microglia microgliocyte CL:0000129 microglial cell A central nervous system macrophage found in the parenchyma of the central nervous system. Marker include CD11b-positive, F4/80-positive, and CD68-positive. GOC:add GOC:dsd GOC:tfm ISBN:0721601464 MESH:D017628 PMID:11517395 PMID:12430718 PMID:14561199 PMID:14612429 PMID:16177057 PMID:19461673 PMID:2089275 hortega cells http://www.copewithcytokines.de/ microgliocyte http://www.copewithcytokines.de/ A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. This cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs. CL:0002452 cell BMSC CFU-F MSC Stem Cells, Mesenchymal bone marrow stromal cells colony-forming unit-fibroblast marrow stromal cells mesenchymal precursor cell mesenchymal progenitor cells mesenchymal stem cell mesenchymal stromal cell mesenchymal stromal cells CL:0000134 mesenchymal cell A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. This cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs. FB:ma GOC:dsd PMCID:PMC2613570 PMID:10102814j PMID:16923606 PMID:_17986482 PMID:_19960544 http://en.wikipedia.org/wiki/Mesenchymal_stem_cell http://www.copewithcytokines.de/cope.cgi?key=mesenchymal%20stem%20cells MSC PMID:11378515 Stem Cells, Mesenchymal MESH:D044982 marrow stromal cells PMID:11378515 mesenchymal progenitor cells MESH:D044982 A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. CL:0000450 cell adipocyte adipose cell CL:0000136 fat cell A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides. MESH:A.11.329.114 Polymorphic cell that form cartilage. cell cartilage cell CL:0000138 chondrocyte Polymorphic cell that form cartilage. MESH:A.11.329.171 A classification of cells by their primary end goal or behavior. cell CL:0000144 cell by function A classification of cells by their primary end goal or behavior. FB:ma A cell that specializes in controlled release of one or more substances. cell CL:0000151 secretory cell A cell that specializes in controlled release of one or more substances. GOC:tfm ISBN:0721662544 An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. cell neurosecretory cell CL:0000165 neuroendocrine cell An endocrine cell that has the specialized function to produce and secrete hormones in response to neuronal signals. MESH:A.06.688 A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns. cell myocyte CL:0000187 muscle cell A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns. MESH:A.11.620 A somatic cell located in skeletal muscle. cell CL:0000188 skeletal muscle cell A somatic cell located in skeletal muscle. GOC:tfm true A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). CL:0000191 cell SMCs myocytes, smooth muscle non-striated muscle cell smooth muscle fiber CL:0000192 smooth muscle cell A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast). MESH:A.11.620.520 MESH:D032389 PMID:9315361 SMCs PMID:9315361 myocytes, smooth muscle MESH:D032389 cell CL:0000196 flight muscle cell A cell whose function is determined by the generation or the reception of an electric signal. cell CL:0000211 electrically active cell A cell whose function is determined by the generation or the reception of an electric signal. FB:ma A classification of cells by the number of their nuclei. cell CL:0000224 cell by nuclear number A classification of cells by the number of their nuclei. FB:ma GOC:tfm A cell with more than one nucleus. cell syncitium syncytial cell syncytium CL:0000228 multinucleate cell A cell with more than one nucleus. FB:ma A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. cell CL:0000243 glial cell (sensu Vertebrata) A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear. MESH:A.08.637 cell CL:0000327 extracellular matrix secreting cell A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors. cell CL:0000335 mesenchyme condensation cell A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors. GOC:tfm PMID:5025404 true A cell whose function is determined by its response to an electric signal. cell CL:0000393 electrically responsive cell A cell whose function is determined by its response to an electric signal. FB:ma A classification of cells by the number of haploid genome equivalents of their nucleus or nuclei. cell CL:0000414 cell by ploidy A classification of cells by the number of haploid genome equivalents of their nucleus or nuclei. FB:ma GOC:tfm cell CL:0000444 obliquely striated muscle cell cell CL:0000445 apoptosis fated cell true cell CL:0000468 neuroglioblast A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. cell CL:0000499 stromal cell A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere. GOC:tfm MESH:A.11.329.830 A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo. It It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. cell plasmidotrophoblast syncytial trophoblast syntrophoblast CL:0000525 syncytiotrophoblast cell A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo. It It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy. GOC:tfm ISBN:0323052908 A neuron which conveys sensory information centrally from the periphery. cell input neuron CL:0000526 afferent neuron A neuron which conveys sensory information centrally from the periphery. GOC:tfm MESH:A.08.663.650 A neuron which sends impulses peripherally to activate muscles or secretory cells. cell output neuron CL:0000527 efferent neuron A neuron which sends impulses peripherally to activate muscles or secretory cells. MESH:A.08.663.655 The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. cell nerve cell CL:0000540 neuron The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. MESH:A.08.663 MESH:D009474 The reproductive cell in multicellular organisms. cell CL:0000586 germ cell The reproductive cell in multicellular organisms. MESH:A.05.360.490 An epithelial cell that secretes cuticle. cell CL:0000658 cuticle secreting cell An epithelial cell that secretes cuticle. GOC:tfm An extracellular matrix secreting cell that secretes collagen. cell CL:0000667 collagen secreting cell An extracellular matrix secreting cell that secretes collagen. GOC:tfm A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. cell Gonocyte Primitive germ cell CL:0000670 primordial germ cell A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells. GOC:tfm PMID:1381289 cell CL:0000680 muscle precursor cell Muscle cell which has as its direct parts myofilaments organized into sarcomeres. cell CL:0000737 striated muscle cell Muscle cell which has as its direct parts myofilaments organized into sarcomeres. GOC:tfm ISBN:0721662544 A myocyte located in the heart. The contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. cell cardiac myocyte cardiocyte cardiomyocyte heart muscle cell CL:0000746 cardiac muscle cell A myocyte located in the heart. The contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei. GOC:tfm ISBN:0323052908 A cell of a hematopoietic lineage. cell haematopoietic cell haemopoietic cell hemopoietic cell CL:0000988 hematopoietic cell A cell of a hematopoietic lineage. GOC:add GO_REF:0000031 A cell containing at least one nucleus. cell CL:0002242 nucleate cell A cell containing at least one nucleus. GOC:tfm A cell that is part of the nervous system. cell CL:0002319 neural cell A cell that is part of the nervous system. GOC:tfm ISBN:0618947256 A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. CL:1000406 cell CL:0002320 connective tissue cell A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone. GOC:tfm ISBN:0618947256 A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). cell CL:0002371 somatic cell A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell). GOC:tfm ISBN:0721662544 A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. CL:0000369 cell myotubule single cell sarcomere skeletal muscle fiber CL:0002372 myotube A myotube is a multinucleated cells that is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse. GOC:tfm ISBN:0323052908 true A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. cell CL:0002573 Schwann cell A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function. GOC:tfm true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true true