format-version: 1.2 ontology: uberon/subsets/pulmonary-minimal [Term] id: BFO:0000001 name: entity [Term] id: BFO:0000002 name: continuant is_a: BFO:0000001 ! entity relationship: part_of BFO:0000002 ! continuant [Term] id: BFO:0000004 name: independent continuant is_a: BFO:0000002 ! continuant relationship: part_of BFO:0000004 ! independent continuant [Term] id: BFO:0000040 name: material entity is_a: BFO:0000004 ! independent continuant [Term] id: CL:0000082 name: epithelial cell of lung namespace: cell def: "An epithelial cell of the lung." [] synonym: "lung epithelial cell" EXACT [] xref: BTO:0004299 relationship: part_of UBERON:0000115 ! lung epithelium [Term] id: CL:0000158 name: club cell namespace: cell def: "Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium." [] synonym: "bronchiolar non-ciliated cell" EXACT [] synonym: "Clara cell" EXACT [] synonym: "club cell of bronchiole" EXACT [] xref: BTO:0004811 xref: FMA:14119 is_a: CL:0002328 ! bronchial epithelial cell [Term] id: CL:0000307 name: tracheal epithelial cell namespace: cell alt_id: CL:1000474 def: "An epithelial cell found in the trachea." [] comment: This class is for the vertebrate tracheal structure. For the analagous insect cell type, see 'respiratory tube epithelial cell' synonym: "tracheocyte" EXACT [] xref: FMA:74793 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree relationship: part_of UBERON:0003126 ! trachea [Term] id: CL:0000322 name: pneumocyte namespace: cell def: "An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [] synonym: "alveolar epithelial cell" EXACT [] synonym: "pneumonocyte" EXACT [] xref: BTO:0000395 xref: CALOHA:TS-2168 xref: FMA:62499 is_a: CL:0010003 ! epithelial cell of alveolus of lung relationship: part_of UBERON:0004821 ! pulmonary alveolus epithelium [Term] id: CL:0000583 name: alveolar macrophage namespace: cell def: "A tissue-resident macrophage found in the alveoli of the lungs. Ingests small inhaled particles resulting in degradation and presentation of the antigen to immunocompetent cells. Markers include F4/80-positive, CD11b-/low, CD11c-positive, CD68-positive, sialoadhesin-positive, dectin-1-positive, MR-positive, CX3CR1-negative." [] comment: Markers: Mouse: F4/80mid, CD11b-/low, CD11c+, CD68+, sialoadhesin+, dectin-1+, MR+, CX3CR1-. synonym: "dust cell" EXACT [] synonym: "MF.Lu" RELATED [] xref: BTO:0000802 xref: CALOHA:TS-0030 xref: FMA:83023 is_a: CL:1001603 ! lung macrophage [Term] id: CL:0000853 name: olfactory epithelial support cell namespace: cell def: "Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons." [] synonym: "olfactory sustentacular cell" EXACT [] synonym: "supporting cell of olfactory epithelium" EXACT [] synonym: "sustentaculocyte of olfactory epithelium" EXACT [] xref: FMA:62302 is_a: CL:0002169 ! basal cell of olfactory epithelium [Term] id: CL:0000869 name: tonsillar macrophage namespace: cell def: "A gut-associated lymphoid tissue macrophage found in tonsils." [] relationship: part_of UBERON:0002372 ! tonsil [Term] id: CL:0000886 name: nasal and broncial associated lymphoid tissue macrophage namespace: cell def: "A mucosa-associated lymphoid tissue macrophage found in the nasal and bronchial mucosa-associated lymphoid tissues." [] relationship: part_of UBERON:0001963 ! bronchial-associated lymphoid tissue [Term] id: CL:0002062 name: type I pneumocyte namespace: cell def: "A type I pneumocyte is a flattened, branched pneumocyte that covers more than 98% of the alveolar surface. This large cell has thin (50-100 nm) cytoplasmic extensions to form the air-blood barrier essential for normal gas exchange." [] synonym: "AT1" EXACT [] synonym: "ATI" EXACT [] synonym: "lung type 1 cells" EXACT [] synonym: "membranous pneumocytes" EXACT [] synonym: "pulmonary alveolar type I cell" EXACT [] synonym: "small alveolar cells" EXACT [] synonym: "squamous alveolar cell" EXACT [] synonym: "squamous alveolar lining cell" EXACT [] synonym: "type 1 alveolar epithelial cells" EXACT [] synonym: "type 1 pneumocyte" EXACT [] synonym: "type I alveolar cells" EXACT [] synonym: "type I alveolar epithelial cells" EXACT [] xref: BTO:0000780 xref: FMA:62500 is_a: CL:0000322 ! pneumocyte created_by: tmeehan creation_date: 2010-06-23T04:37:54Z [Term] id: CL:0002063 name: type II pneumocyte namespace: cell def: "A type II pneumocyte is a pneumocyte that modulates the fluid surrounding the alveolar epithelium by secreting and recycling surfactants. This cell type also contributes to tissue repair and can differentiate after injury into a type I pneumocyte. Thicker than squamous alveolar cells, have a rounded apical surface that projects above the level of surrounding epithelium. The free surface is covered by short microvilli." [] synonym: "AT2" EXACT [] synonym: "ATII" EXACT [] synonym: "cuboidal type II cell" EXACT [] synonym: "granular pneumocyte" EXACT [] synonym: "great alveolar cell" EXACT [] synonym: "lung type 2 cell" EXACT [] synonym: "lung type II cell" RELATED [] synonym: "TII" EXACT [] synonym: "type 2 alveolar epithelial cell" EXACT [] synonym: "type 2 alveolocyte" EXACT [] synonym: "type 2 pneumocyte" EXACT [] synonym: "type II alveolar cell" EXACT [] synonym: "type II alveolar epithelial cell" EXACT [] synonym: "type II alveolocyte" EXACT [] xref: BTO:0000538 xref: FMA:62501 is_a: CL:0000322 ! pneumocyte is_a: CL:1000272 ! lung secretory cell created_by: tmeehan creation_date: 2010-06-24T12:04:13Z [Term] id: CL:0002075 name: brush cell of trachebronchial tree namespace: cell def: "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known." [] synonym: "pulmonary brush cell" RELATED [] is_a: CL:0002202 ! epithelial cell of tracheobronchial tree created_by: tmeehan creation_date: 2010-06-29T03:22:46Z [Term] id: CL:0002145 name: ciliated columnar cell of tracheobronchial tree namespace: cell def: "A ciliated columnar cell found in the trachea and bronchus. Vary from low to tall columnar; possesses up to 300 cilia at its surface, interspersed with long irregular microvilli with the cilia varying in length from about 6um in the trachea to about 4um in the terminal bronchioles; driving force of the ciliary current in the bronchial tree." [] xref: FMA:70542 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree created_by: tmeehan creation_date: 2010-08-24T03:38:29Z [Term] id: CL:0002169 name: basal cell of olfactory epithelium namespace: cell alt_id: CL:1000395 def: "An epithelial cell located on the basal lamina of the olfactory epithelium." [] synonym: "horizontal basal call" BROAD [] xref: FMA:62303 relationship: part_of UBERON:0001997 ! olfactory epithelium created_by: tmeehan creation_date: 2010-08-26T01:58:54Z [Term] id: CL:0002171 name: globose cell of olfactory epithelium namespace: cell def: "A rounded or elliptical epithelial cell, with pale-staining open face nucleus and pale cytoplasm rich in free ribosomes and clusters of centrioles; form a distinct basal zone spaced slightly from the basal surface of the epithelium." [] synonym: "blastema cell of olfactory epithelium" EXACT [] xref: FMA:67874 is_a: CL:0002169 ! basal cell of olfactory epithelium created_by: tmeehan creation_date: 2010-08-26T01:59:18Z [Term] id: CL:0002184 name: basal proper cell of olfactory epithelium namespace: cell def: "A flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells; lie in contact with the basal lamina of olfactory epithelium." [] synonym: "horizontal basal cells" EXACT [] xref: FMA:62304 is_a: CL:0002169 ! basal cell of olfactory epithelium created_by: tmeehan creation_date: 2010-08-26T01:59:22Z [Term] id: CL:0002202 name: epithelial cell of tracheobronchial tree namespace: cell alt_id: CL:1000407 def: "An epithelial cell of the tracheobronchial tree." [] xref: FMA:66816 is_a: CL:0002632 ! epithelial cell of lower respiratory tract relationship: part_of UBERON:0007196 ! tracheobronchial tree created_by: tmeehan creation_date: 2010-09-02T02:09:14Z [Term] id: CL:0002205 name: brush cell of lobular bronchiole namespace: cell alt_id: CL:1000386 def: "A brush cell found in the epithelium of lobular bronchiole." [] xref: FMA:263220 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002208 ! brush cell of bronchus relationship: part_of UBERON:0002051 ! epithelium of bronchiole created_by: tmeehan creation_date: 2010-09-02T02:38:34Z [Term] id: CL:0002206 name: brush cell of terminal bronchiole namespace: cell alt_id: CL:1000390 def: "A brush cell of the epithelium in the terminal bronchiole." [] xref: FMA:263228 is_a: CL:0002205 ! brush cell of lobular bronchiole relationship: part_of UBERON:0001958 ! terminal bronchiole epithelium created_by: tmeehan creation_date: 2010-09-02T02:38:36Z [Term] id: CL:0002207 name: brush cell of trachea namespace: cell alt_id: CL:1000388 def: "Brush cell of the epithelium in the trachea." [] xref: FMA:263224 is_a: CL:0000307 ! tracheal epithelial cell is_a: CL:0002075 ! brush cell of trachebronchial tree relationship: part_of UBERON:0001901 ! epithelium of trachea created_by: tmeehan creation_date: 2010-09-02T02:38:37Z [Term] id: CL:0002208 name: brush cell of bronchus namespace: cell alt_id: CL:1000389 def: "A brush cell found in the epithelium of bronchus." [] xref: FMA:263226 is_a: CL:0002075 ! brush cell of trachebronchial tree is_a: CL:0002328 ! bronchial epithelial cell created_by: tmeehan creation_date: 2010-09-02T02:38:42Z [Term] id: CL:0002209 name: intermediate epitheliocyte namespace: cell def: "An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells." [] synonym: "undifferentiated columnar cell of tracheobronchial tree" EXACT [] xref: FMA:69060 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree created_by: tmeehan creation_date: 2010-09-02T02:53:59Z [Term] id: CL:0002241 name: pulmonary interstitial fibroblast namespace: cell def: "A fibroblasts found in interstitial spaces in the pulmonary tract. Greater numbers of these cells are found in idiopathic pulmonary fibrosis." [] synonym: "pulmonary myofibroblast" EXACT [] synonym: "pulmonary septal cell" EXACT [] xref: FMA:84467 relationship: part_of UBERON:0001004 ! respiratory system created_by: tmeehan creation_date: 2010-09-07T02:29:38Z [Term] id: CL:0002328 name: bronchial epithelial cell namespace: cell def: "An epithelial cell of the bronchus." [] xref: BTO:0002922 is_a: CL:0002202 ! epithelial cell of tracheobronchial tree relationship: part_of UBERON:0002031 ! epithelium of bronchus created_by: tmeehan creation_date: 2010-09-20T02:00:00Z [Term] id: CL:0002329 name: basal epithelial cell of tracheobronchial tree namespace: cell def: "An epithelial cell type that lacks the columnar shape typical for other respiratory epithelial cells. This cell type is able to differentiate into other respiratory epithelial cells in response to injury." [] is_a: CL:0002202 ! epithelial cell of tracheobronchial tree created_by: tmeehan creation_date: 2010-09-20T02:10:36Z [Term] id: CL:0002330 name: undifferentiated cell of bronchus epithelium namespace: cell def: "An undifferentiated columnar cell of the bronchus epithelium" [] is_a: CL:0002328 ! bronchial epithelial cell created_by: tmeehan creation_date: 2010-09-20T02:17:58Z [Term] id: CL:0002332 name: ciliated cell of the bronchus namespace: cell def: "A ciliated cell of the bronchus." [] is_a: CL:0002145 ! ciliated columnar cell of tracheobronchial tree is_a: CL:0002328 ! bronchial epithelial cell created_by: tmeehan creation_date: 2010-09-20T02:21:12Z [Term] id: CL:0002368 name: respiratory epithelial cell namespace: cell def: "An endo-epithelial cell of the respiratory tract." [] synonym: "airway epithelial cell" EXACT [] xref: BTO:0004533 relationship: part_of UBERON:0000065 ! respiratory tract created_by: tmeehan creation_date: 2010-09-23T04:38:49Z [Term] id: CL:0002370 name: respiratory goblet cell namespace: cell def: "A simple columnar epithelial cell that secretes mucin. Rough endoplasmic reticulum, mitochondria, the nucleus, and other organelles are concentrated in the basal portion. The apical plasma membrane projects microvilli to increase surface area for secretion." [] synonym: "respiratory mucosa goblet cells" EXACT [] relationship: part_of UBERON:0004802 ! respiratory tract epithelium created_by: tmeehan creation_date: 2010-09-23T04:42:27Z [Term] id: CL:0002480 name: nasal mucosa goblet cell namespace: cell def: "A goblet cell located in the nasal epithelium." [] xref: MP:0002262 is_a: CL:0002370 ! respiratory goblet cell relationship: part_of UBERON:0005384 ! nasal cavity epithelium created_by: tmeehan creation_date: 2010-12-03T03:03:02Z [Term] id: CL:0002553 name: fibroblast of lung namespace: cell def: "A fibroblast that is part of lung." [] xref: BTO:0000764 xref: CALOHA:TS-0575 relationship: part_of UBERON:0002048 ! lung created_by: tmeehan creation_date: 2011-02-28T05:11:03Z [Term] id: CL:0002598 name: bronchial smooth muscle cell namespace: cell xref: BTO:0004402 is_a: CL:0019019 ! tracheobronchial smooth muscle cell relationship: part_of UBERON:0002185 ! bronchus created_by: tmeehan creation_date: 2011-03-06T05:46:39Z [Term] id: CL:0002600 name: smooth muscle cell of trachea namespace: cell def: "A smooth muscle cell of the trachea." [] is_a: CL:0019019 ! tracheobronchial smooth muscle cell relationship: part_of UBERON:0003126 ! trachea created_by: tmeehan creation_date: 2011-03-06T05:50:28Z [Term] id: CL:0002631 name: epithelial cell of upper respiratory tract namespace: cell is_a: CL:0002368 ! respiratory epithelial cell relationship: part_of UBERON:0001557 ! upper respiratory tract created_by: tmeehan creation_date: 2011-06-21T12:28:55Z [Term] id: CL:0002632 name: epithelial cell of lower respiratory tract namespace: cell is_a: CL:0002368 ! respiratory epithelial cell relationship: part_of UBERON:0001558 ! lower respiratory tract created_by: tmeehan creation_date: 2011-06-21T12:29:31Z [Term] id: CL:0002633 name: respiratory basal cell namespace: cell def: "A basal cell in the respiratory tract." [] synonym: "airway basal cell" EXACT [] synonym: "airway basal stem cell" EXACT [] is_a: CL:0002368 ! respiratory epithelial cell created_by: tmeehan creation_date: 2011-06-21T03:11:10Z [Term] id: CL:0002638 name: bronchioalveolar stem cell namespace: cell def: "A respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole. This cell types gives rise to alveolar cell types and club cells in response to lung injury. This cell type expresses markers Scgb1a1 and Sftpc." [] synonym: "basal epithelial cell of bronchioalveolar duct junction" EXACT [] synonym: "BASC" EXACT [] is_a: CL:1000350 ! basal cell of epithelium of terminal bronchiole is_a: CL:1000351 ! basal cell of epithelium of respiratory bronchiole created_by: tmeehan creation_date: 2011-06-21T03:26:08Z [Term] id: CL:0008026 name: open tracheal system tracheocyte namespace: cell def: "An epithelial cell that is part of the epithelium of a tracheal tube in an open tracheal system, such as that found in insects." [] relationship: part_of UBERON:0003127 ! open tracheal system trachea [Term] id: CL:0010003 name: epithelial cell of alveolus of lung def: "An epithelial cell that is part_of a alveolus of lung." [] comment: May be merged with pneumocyte in future synonym: "alveolus of lung epithelial cell" EXACT [] is_a: CL:0000082 ! epithelial cell of lung relationship: part_of UBERON:0002299 ! alveolus of lung created_by: GOC:cjm [Term] id: CL:0017000 name: pulmonary ionocyte namespace: cell def: "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice." [] is_a: CL:0000082 ! epithelial cell of lung property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0003-2473-2313 [Term] id: CL:0019001 name: tracheobronchial serous cell def: "Any serous secreting cell that is part of the tracheobronchial epithelium." [] subset: added_for_HCA synonym: "serous cell of tracheobronchial tree" EXACT [] relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X property_value: http://purl.org/dc/elements/1.1/date 2020-05-07T16:03:27Z xsd:dateTime [Term] id: CL:0019002 name: tracheobronchial chondrocyte def: "Any chondrocyte that is part of the tracheobronchial tree." [] subset: added_for_HCA synonym: "chondrocyte of tracheobronchial tree" EXACT [] relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X property_value: http://purl.org/dc/elements/1.1/date 2020-05-07T17:29:51Z xsd:dateTime [Term] id: CL:0019003 name: tracheobronchial goblet cell def: "Any goblet cell that is part of the tracheobronchial epithelium." [] subset: added_for_HCA synonym: "goblet cell of tracheobronchial tree" EXACT [] is_a: CL:0002202 ! epithelial cell of tracheobronchial tree is_a: CL:0002370 ! respiratory goblet cell property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X property_value: http://purl.org/dc/elements/1.1/date 2020-05-07T18:14:52Z xsd:dateTime [Term] id: CL:0019015 name: lung parenchyma resident eosinophil def: "An eosinophil with a ring-shaped nucleus that is resident in the lung parenchyma. In mouse, lung parenchyma resident eosinophils are IL-5-independent Siglec-F(intermediate) CD62L+ CD101(low). In human, they are Siglec-8+ CD62L+ IL-3R(low)." [] synonym: "lung-resident eosinophil" EXACT [] synonym: "rEos" EXACT [] relationship: part_of UBERON:0008946 ! lung parenchyma property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X property_value: http://purl.org/dc/elements/1.1/date 2020-05-26T09:42:19Z xsd:dateTime [Term] id: CL:0019019 name: tracheobronchial smooth muscle cell def: "A smooth muscle cell that is part of the tracheobronchial tree." [] synonym: "smooth muscle cell of tracheobronchial tree" EXACT [] relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X property_value: http://purl.org/dc/elements/1.1/date 2020-07-21T12:50:22Z xsd:dateTime [Term] id: CL:1000143 name: lung goblet cell is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002370 ! respiratory goblet cell is_a: CL:1000272 ! lung secretory cell [Term] id: CL:1000223 name: lung neuroendocrine cell is_a: CL:0000082 ! epithelial cell of lung is_a: CL:1000272 ! lung secretory cell [Term] id: CL:1000271 name: lung ciliated cell relationship: part_of UBERON:0002048 ! lung [Term] id: CL:1000272 name: lung secretory cell relationship: part_of UBERON:0002048 ! lung [Term] id: CL:1000312 name: bronchial goblet cell namespace: cell def: "A goblet cell that is part of the epithelium of bronchus." [] synonym: "goblet cell of epithelium of bronchus" EXACT [] xref: FMA:263032 is_a: CL:0002328 ! bronchial epithelial cell is_a: CL:0019003 ! tracheobronchial goblet cell [Term] id: CL:1000329 name: tracheal goblet cell namespace: cell def: "A goblet cell that is part of the epithelium of trachea." [] synonym: "goblet cell of epithelium of trachea" EXACT [] xref: FMA:263075 is_a: CL:0000307 ! tracheal epithelial cell is_a: CL:0019003 ! tracheobronchial goblet cell relationship: part_of UBERON:0001901 ! epithelium of trachea [Term] id: CL:1000330 name: serous cell of epithelium of trachea namespace: cell def: "A serous secreting cell that is part of the epithelium of trachea." [] xref: FMA:263078 is_a: CL:0019001 ! tracheobronchial serous cell relationship: part_of UBERON:0001901 ! epithelium of trachea [Term] id: CL:1000331 name: serous cell of epithelium of bronchus namespace: cell def: "A serous secreting cell that is part of the epithelium of bronchus." [] xref: FMA:263080 is_a: CL:0019001 ! tracheobronchial serous cell relationship: part_of UBERON:0002031 ! epithelium of bronchus [Term] id: CL:1000332 name: serous cell of epithelium of terminal bronchiole namespace: cell def: "A serous secreting cell that is part of the epithelium of terminal bronchiole." [] xref: FMA:263082 is_a: CL:1000333 ! serous cell of epithelium of lobular bronchiole relationship: part_of UBERON:0001958 ! terminal bronchiole epithelium [Term] id: CL:1000333 name: serous cell of epithelium of lobular bronchiole namespace: cell def: "A serous secreting cell that is part of the epithelium of bronchiole." [] xref: FMA:263084 is_a: CL:1000272 ! lung secretory cell is_a: CL:1000331 ! serous cell of epithelium of bronchus relationship: part_of UBERON:0002051 ! epithelium of bronchiole [Term] id: CL:1000348 name: basal cell of epithelium of trachea namespace: cell def: "A basal cell that is part of the epithelium of trachea." [] xref: FMA:263118 is_a: CL:0000307 ! tracheal epithelial cell is_a: CL:0002633 ! respiratory basal cell relationship: part_of UBERON:0001901 ! epithelium of trachea [Term] id: CL:1000349 name: basal cell of epithelium of bronchus namespace: cell alt_id: CL:0002331 def: "A basal cell found in the bronchus epithelium." [] synonym: "basal cell of bronchus" EXACT [] xref: FMA:263120 is_a: CL:0002328 ! bronchial epithelial cell is_a: CL:0002329 ! basal epithelial cell of tracheobronchial tree is_a: CL:0002633 ! respiratory basal cell [Term] id: CL:1000350 name: basal cell of epithelium of terminal bronchiole namespace: cell def: "A basal cell that is part of the epithelium of terminal bronchiole." [] xref: FMA:263122 is_a: CL:1000352 ! basal cell of epithelium of lobular bronchiole relationship: part_of UBERON:0001958 ! terminal bronchiole epithelium [Term] id: CL:1000351 name: basal cell of epithelium of respiratory bronchiole namespace: cell def: "A basal cell that is part of the epithelium of respiratory bronchiole." [] xref: FMA:263124 is_a: CL:1000352 ! basal cell of epithelium of lobular bronchiole relationship: part_of UBERON:0001955 ! epithelium of respiratory bronchiole [Term] id: CL:1000352 name: basal cell of epithelium of lobular bronchiole namespace: cell def: "A basal cell that is part of the epithelium of bronchiole." [] xref: FMA:263126 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:1000349 ! basal cell of epithelium of bronchus relationship: part_of UBERON:0002051 ! epithelium of bronchiole [Term] id: CL:1000377 name: dense-core granulated cell of epithelium of trachea namespace: cell def: "A Feyrter cell that is part of the epithelium of trachea." [] xref: FMA:263184 is_a: CL:0000307 ! tracheal epithelial cell relationship: part_of UBERON:0001901 ! epithelium of trachea [Term] id: CL:1000491 name: mesothelial cell of pleura namespace: cell def: "A mesothelial cell that is part of the pleura." [] synonym: "pleural mesothelial cell" EXACT [] xref: FMA:86737 relationship: part_of UBERON:0000977 ! pleura [Term] id: CL:1000492 name: mesothelial cell of parietal pleura namespace: cell def: "A mesothelial cell that is part of the parietal pleura." [] xref: FMA:86738 is_a: CL:1000491 ! mesothelial cell of pleura relationship: part_of UBERON:0002400 ! parietal pleura [Term] id: CL:1000493 name: mesothelial cell of visceral pleura namespace: cell def: "A mesothelial cell that is part of the visceral pleura." [] xref: FMA:86739 is_a: CL:0000082 ! epithelial cell of lung is_a: CL:1000491 ! mesothelial cell of pleura relationship: part_of UBERON:0002401 ! visceral pleura [Term] id: CL:1001566 name: bronchioalveolar stem cells namespace: cl def: "A respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole, which gives rise to alveolar cell types and club cells in response to lung injury." [] relationship: part_of UBERON:0000115 ! lung epithelium [Term] id: CL:1001567 name: lung endothelial cell namespace: cl synonym: "endothelial cell of lung" RELATED [] synonym: "pulmonary vessel endothelial cell" RELATED [] is_a: CL:0000082 ! epithelial cell of lung relationship: part_of UBERON:0000102 ! lung vasculature [Term] id: CL:1001573 name: nasopharyngeal epithelial cell def: "Cell of the nasopharyngeal epithelium." [] synonym: "nasopharynx respiratory epithelial cells" RELATED [] xref: CALOHA:TS-2398 is_a: CL:0002631 ! epithelial cell of upper respiratory tract relationship: part_of UBERON:0001951 ! epithelium of nasopharynx [Term] id: CL:1001577 name: tonsil squamous cell def: "Squamous cell of tonsil epithelium." [] synonym: "tonsil squamous epithelial cell" RELATED [] synonym: "tonsil squamous epithelial cells" RELATED [] synonym: "tonsillar squamous cell" RELATED [] synonym: "tonsillar squamous epithelial cell" RELATED [] xref: CALOHA:TS-1253 relationship: part_of UBERON:0013696 ! tonsil epithelium [Term] id: CL:1001603 name: lung macrophage def: "Circulating macrophages and tissue macrophages (alveolar macrophages) of lung." [] synonym: "lung macrophages" RELATED [] xref: CALOHA:TS-0576 relationship: part_of UBERON:0002048 ! lung [Term] id: CL:2000006 name: tonsil germinal center B cell namespace: cell def: "Any germinal center B cell that is part of a tonsil." [] relationship: part_of UBERON:0002372 ! tonsil created_by: TermGenie creation_date: 2014-03-28T21:35:33Z [Term] id: CL:2000016 name: lung microvascular endothelial cell namespace: cell def: "Any lung endothelial cell that is part of a microvascular endothelium." [] is_a: CL:1001567 ! lung endothelial cell created_by: TermGenie creation_date: 2014-06-04T16:00:56Z [Term] id: CL:2000093 name: bronchus fibroblast of lung namespace: cell def: "Any fibroblast of lung that is part of a bronchus." [] is_a: CL:0002553 ! fibroblast of lung relationship: part_of UBERON:0002185 ! bronchus created_by: TermGenie creation_date: 2015-03-31T21:16:22Z [Term] id: CL:2000094 name: nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa namespace: cell def: "Any epithelial cell of viscerocranial mucosa that is part of a nasal cavity respiratory epithelium." [] relationship: part_of UBERON:0005385 ! nasal cavity respiratory epithelium created_by: TermGenie creation_date: 2015-03-31T22:25:17Z [Term] id: UBERON:0000031 name: lamina propria of trachea namespace: uberon def: "A lamina propria that is part of a respiratory airway." [OBOL:automatic] synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of windpipe" EXACT [OBOL:automatic] synonym: "lamina propria of windpipe" EXACT [OBOL:automatic] synonym: "trachea lamina propria" EXACT [] synonym: "trachea lamina propria mucosa" EXACT [OBOL:automatic] synonym: "trachea lamina propria mucosae" EXACT [OBOL:automatic] synonym: "tracheal lamina propria" EXACT [] synonym: "windpipe lamina propria" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosa" EXACT [OBOL:automatic] synonym: "windpipe lamina propria mucosae" EXACT [OBOL:automatic] xref: EMAPA:35877 xref: FMA:265157 xref: MA:0001858 xref: NCIT:C49305 xref: UMLS:C1710457 {source="ncithesaurus:Trachea_Lamina_Propria"} is_a: UBERON:0004779 ! respiratory system lamina propria relationship: part_of UBERON:0000379 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! tracheal mucosa relationship: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0000061 name: anatomical structure namespace: uberon def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: upper_level synonym: "biological structure" EXACT [] synonym: "connected biological structure" EXACT [CARO:0000003] xref: AAO:0010825 xref: AEO:0000003 xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 xref: FBbt:00007001 xref: FMA:305751 xref: FMA:67135 xref: GAID:781 xref: HAO:0000003 xref: http://dbpedia.org/ontology/AnatomicalStructure xref: MA:0003000 xref: MESH:D000825 xref: SCTID:362889002 xref: TAO:0000037 xref: TGMA:0001823 xref: VHOG:0001759 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000065 name: respiratory tract namespace: uberon def: "Anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0001606 xref: EHDAA:1568 xref: EHDAA:2219 xref: EMAPA:16737 xref: FMA:265130 xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA xref: SCTID:361110005 xref: VHOG:0000393 is_a: UBERON:0001005 ! respiratory airway relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000072 name: proximo-distal subdivision of respiratory tract namespace: uberon def: "An section of a respiratory tract." [http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "respiratory tract" RELATED [MA:0000434] synonym: "subdivision of respiratory tract" RELATED [] xref: EMAPA:16737 xref: FMA:45660 xref: MA:0000434 relationship: part_of UBERON:0000065 ! respiratory tract property_value: UBPROP:0000012 "MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole" xsd:string {external_ontology="MA"} [Term] id: UBERON:0000101 name: lobe of lung namespace: uberon def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO] subset: pheno_slim synonym: "lung lobe" EXACT [] synonym: "pulminory lobe" EXACT [] synonym: "pulmonary lobe" EXACT [FMA:7311] xref: EMAPA:36281 xref: FMA:7311 xref: galen:LobeOfLung xref: MA:0003098 xref: NCIT:C34021 xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA xref: SCTID:245524004 xref: UMLS:C0225752 {source="ncithesaurus:Lung_Lobe"} relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000102 name: lung vasculature namespace: uberon def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] subset: pheno_slim synonym: "lung vascular network" EXACT [OBOL:automatic] synonym: "pulmonary vasculature" EXACT [FMA:73750] synonym: "vascular network of lung" EXACT [OBOL:automatic] synonym: "vasculature of lung" EXACT [OBOL:automatic] xref: FMA:73750 relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000114 name: lung connective tissue namespace: uberon def: "the connective tissue located between the respiratory (airway and alveolar) epithelium, the capillary endothelium and pleural mesothelium; it contains basement membrane composed of collagen, elastin, proteoglycans, and fibronectin" [ISBN:0-683-40008-8, MGI:anna, MP:0002276, PMID:14635660] subset: pheno_slim synonym: "connective tissue of lung" EXACT [OBOL:automatic] synonym: "lung interstitial tissue" RELATED [MA:0001782] synonym: "lung interstitium" RELATED [] synonym: "pulmonary connective tissue" RELATED [EMAPA:35521] synonym: "pulmonary interstitial tissue" RELATED [] synonym: "pulmonary interstitium" EXACT [FMA:27533] xref: EMAPA:35521 xref: FMA:27533 xref: MA:0001782 xref: SCTID:201609008 is_a: UBERON:0003580 ! lower respiratory tract connective tissue relationship: part_of UBERON:0002048 ! lung property_value: UBPROP:0000009 "it functions in the mechanical behavior of the lung, and forms a barrier to regulate the flow of plasma constituents from the capillaries to the airway and alveolar spaces" xsd:string [Term] id: UBERON:0000115 name: lung epithelium namespace: uberon def: "The epithelial layer of the lung." [MP:0006382] subset: pheno_slim synonym: "epithelial tissue of lung" EXACT [OBOL:automatic] synonym: "epithelium of lung" EXACT [OBOL:automatic] synonym: "lung epithelial tissue" EXACT [OBOL:automatic] synonym: "pulmonary epithelium" RELATED [BTO:0001653] xref: BTO:0001653 xref: EMAPA:32860 xref: MA:0001783 is_a: UBERON:0004815 ! lower respiratory tract epithelium relationship: part_of UBERON:0002048 ! lung property_value: UBPROP:0000008 "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string [Term] id: UBERON:0000116 name: lung saccule namespace: uberon def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] subset: pheno_slim relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung [Term] id: UBERON:0000117 name: respiratory tube namespace: uberon def: "A tube in the respiratory system. Examples: bronchus, bronchiole, trachea." [GO:0030323, http://orcid.org/0000-0002-6601-2165] synonym: "airway" RELATED [] synonym: "respiratory conducting tube" NARROW [MP:0004391] synonym: "segment of tracheobronchial tree" EXACT [FMA:12224] synonym: "segment of tracheobronchial tree" NARROW [FMA:12224] synonym: "tracheobronchial tree segment" NARROW [FMA:12224] xref: EMAPA:37946 {source="MA:th"} xref: FMA:12224 relationship: part_of UBERON:0000065 ! respiratory tract property_value: UBPROP:0000012 "in GO lung development is part of respiratory tube development. This can lead to inconsistencies with other ontologies, e.g. VT. The GO structure may be better represented by a tree of tubes (see the FMA class)" xsd:string {external_ontology="GO"} [Term] id: UBERON:0000170 name: pair of lungs namespace: uberon def: "The pair of anatomical structures comprised of a left lung and right lung." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "lungs" EXACT [] synonym: "lungs pair" EXACT [] synonym: "pulmones" EXACT LATIN [FMA:68877, FMA:TA] synonym: "set of lungs" EXACT [] xref: FMA:68877 xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA relationship: part_of UBERON:0001558 {source="FMA-abduced"} ! lower respiratory tract [Term] id: UBERON:0000171 name: respiration organ namespace: uberon def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585] subset: functional_classification subset: organ_slim synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic] synonym: "breathing organ" EXACT [] synonym: "gas exchange organ" RELATED [] synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "organ of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory organ" EXACT [] synonym: "respiratory system organ" EXACT [OBOL:automatic] xref: EMAPA:17607 xref: SCTID:272626006 xref: SPD:0000428 xref: TGMA:0001247 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000205 name: papula namespace: uberon def: "A thin protuberance on the surface of the body of an echinoderm containing diverticula of the water vascular system lined by ciliated peritoneum. Along with tube feet, provide the principle gas exchange surfaces.." [ISBN:0030229073] synonym: "papulae" EXACT PLURAL [ISBN:0030229073] synonym: "papulli" EXACT PLURAL [] xref: Wikipedia:Papula is_a: UBERON:0002535 ! gill created_by: cjm creation_date: 2009-04-18T01:13:57Z [Term] id: UBERON:0000206 name: pharyngeal gill namespace: uberon def: "A gill that develops in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx." [Wikipedia:Gill#Vertebrate_gills] xref: ANISEED:1235300 xref: Wikipedia:Gill#Vertebrate_gills is_a: UBERON:0002535 ! gill property_value: UBPROP:0000008 "In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury" xsd:string property_value: UBPROP:0000009 "Gills are made of filaments which help increase surface area for oxygen exchange" xsd:string created_by: cjm creation_date: 2009-04-18T01:18:17Z [Term] id: UBERON:0000355 name: pharyngeal mucosa namespace: uberon alt_id: UBERON:0003344 def: "A mucosa that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of pharynx" EXACT [FMA:55031] synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047] synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic] synonym: "pharynx mucosa" EXACT [OBOL:automatic] synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa pharyngea" EXACT LATIN [FMA:55031, FMA:TA] synonym: "tunica mucosa pharyngis" EXACT [] xref: BTO:0001047 xref: EMAPA:26957 xref: FMA:55031 xref: MA:0003143 xref: SCTID:362121003 is_a: UBERON:0004785 ! respiratory system mucosa relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0000379 name: tracheal mucosa namespace: uberon def: "A mucosa that is part of a respiratory airway." [OBOL:automatic] synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic] synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic] synonym: "mucosa of trachea" EXACT [OBOL:automatic] synonym: "mucosa of windpipe" EXACT [OBOL:automatic] synonym: "mucous membrane of trachea" EXACT [FMA:7471] synonym: "mucous membrane of trachea" EXACT [OBOL:automatic] synonym: "mucous membrane of windpipe" EXACT [OBOL:automatic] synonym: "organ mucosa of trachea" EXACT [OBOL:automatic] synonym: "organ mucosa of windpipe" EXACT [OBOL:automatic] synonym: "trachea mucosa" EXACT [OBOL:automatic] synonym: "trachea mucosa of organ" EXACT [OBOL:automatic] synonym: "trachea mucous membrane" EXACT [OBOL:automatic] synonym: "trachea organ mucosa" EXACT [OBOL:automatic] synonym: "tracheal mucous membrane" EXACT [FMA:7471] synonym: "tunica mucosa (tracheae)" EXACT [FMA:7471] synonym: "tunica mucosa tracheae" EXACT LATIN [FMA:7471, FMA:TA] synonym: "windpipe mucosa" EXACT [OBOL:automatic] synonym: "windpipe mucosa of organ" EXACT [OBOL:automatic] synonym: "windpipe mucous membrane" EXACT [OBOL:automatic] synonym: "windpipe organ mucosa" EXACT [OBOL:automatic] xref: BTO:0001390 xref: FMA:7471 xref: SCTID:660006 is_a: UBERON:0004785 ! respiratory system mucosa relationship: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0000388 name: epiglottis namespace: uberon def: "A part of the pharynx that consists of a flap of elastic cartilage tissue plus a mucous membrane covering, attached to the entrance of the larynx. The epiglottis is found at the root of the tongue and folds back over the entrance to the larynx during swallowing, preventing inhalation of food or drink[MP,modified]" [http://orcid.org/0000-0002-6601-2165, MGI:llw2, MP:0010371, Wikipedia:Epiglottis] subset: pheno_slim xref: BTO:0001628 xref: EHDAA2:0004081 xref: EMAPA:18289 xref: FMA:55130 xref: GAID:111 xref: MESH:A02.165.507.411 xref: NCIT:C12709 xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA xref: SCTID:245502004 xref: UMLS:C0014540 {source="ncithesaurus:Epiglottis"} xref: Wikipedia:Epiglottis relationship: part_of UBERON:0001051 ! hypopharynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray958.png xsd:anyURI property_value: RO:0002161 NCBITaxon:8782 property_value: UBPROP:0000007 "epiglottal" xsd:string [Term] id: UBERON:0000402 name: nasal vestibule namespace: uberon def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule] synonym: "vestibular part of nasal cavity" EXACT [FMA:59644] synonym: "vestibulum nasale" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED LATIN [Wikipedia:Nasal_vestibule] xref: BTO:0001761 xref: CALOHA:TS-0660 xref: FMA:59644 xref: SCTID:278940000 xref: Wikipedia:Nasal_vestibule relationship: part_of UBERON:0001707 ! nasal cavity property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png xsd:anyURI [Term] id: UBERON:0000410 name: bronchial mucosa namespace: uberon def: "A mucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi mucosa" EXACT [OBOL:automatic] synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchi mucous membrane" EXACT [OBOL:automatic] synonym: "bronchi organ mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchial trunk mucous membrane" EXACT [OBOL:automatic] synonym: "bronchial trunk organ mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa" EXACT [OBOL:automatic] synonym: "bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchi" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchus" EXACT [FMA:62652] synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic] synonym: "tunica mucosa bronchi" EXACT LATIN [FMA:62652, FMA:TA] xref: BTO:0001846 xref: FMA:62652 xref: SCTID:30802009 is_a: UBERON:0000379 ! tracheal mucosa relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0000465 name: material anatomical entity namespace: uberon def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737] subset: upper_level xref: AAO:0010264 xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 xref: FBbt:00007016 xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 xref: TGMA:0001826 xref: VHOG:0001721 is_a: BFO:0000040 ! material entity is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000467 name: anatomical system namespace: uberon def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011] subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "anatomical systems" RELATED PLURAL [ZFA:0001439] synonym: "body system" EXACT [BIRNLEX:14] synonym: "connected anatomical system" EXACT [CARO:0000011] synonym: "organ system" EXACT [] synonym: "system" BROAD [GO:0048731] xref: AAO:0000007 xref: AEO:0000011 xref: BILA:0000011 xref: BIRNLEX:14 xref: BSA:0000049 xref: CALOHA:TS-2088 xref: CARO:0000011 xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 xref: FBbt:00004856 xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 xref: MA:0000003 xref: NCIT:C12919 xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ xref: SCTID:278195005 xref: TAO:0001439 xref: TGMA:0001831 xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"} xref: VHOG:0001725 xref: WBbt:0005746 xref: WBbt:0005763 xref: Wikipedia:Organ_system xref: XAO:0003002 xref: ZFA:0001439 is_a: UBERON:0000061 ! anatomical structure property_value: seeAlso EHDAA2:0001330 [Term] id: UBERON:0000929 name: pharyngeal branch of vagus nerve namespace: uberon def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_part_of_vagus_nerve] subset: uberon_slim synonym: "pharyngeal branch" EXACT [FMA:6234] synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [FMA:6234] synonym: "pharyngeal branch of vagus" EXACT [FMA:6234] synonym: "ramus pharyngealis nervi vagalis" EXACT [FMA:6234] synonym: "ramus pharyngeus" EXACT LATIN [FMA:6234, FMA:TA] synonym: "ramus pharyngeus" EXACT [FMA:TA] synonym: "ramus pharyngeus nervi vagi" RELATED LATIN [Wikipedia:Pharyngeal_part_of_vagus_nerve] synonym: "tenth cranial nerve pharyngeal branch" EXACT [FMA:6234] synonym: "vagal pharyngeal branch" EXACT [FMA:6234] synonym: "vagus nerve pharyngeal branch" EXACT [FMA:6234] xref: FMA:6234 xref: SCTID:280298006 xref: Wikipedia:Pharyngeal_part_of_vagus_nerve relationship: part_of UBERON:0001005 ! respiratory airway property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png xsd:anyURI [Term] id: UBERON:0000977 name: pleura namespace: uberon def: "The invaginated serous membrane that surrounds the lungs (the visceral portion) and lines the walls of the pleural cavity (parietal portion)." [https://github.com/obophenotype/uberon/issues/1231, ISBN:0-683-40008-8, MP:0010820, UBERON:cjm, Wikipedia:Pulmonary_pleurae] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "pleura" RELATED [] synonym: "pleural tissue" RELATED [BTO:0001791, NCIT:C12469] synonym: "wall of pleural sac" EXACT [] xref: BTO:0001791 xref: CALOHA:TS-2081 xref: EFO:0001980 xref: EMAPA:16775 xref: EV:0100044 xref: FMA:9583 xref: GAID:360 xref: MA:0000433 xref: MESH:D010994 xref: NCIT:C12469 xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA xref: SCTID:181609007 xref: UMLS:C0032225 {source="ncithesaurus:Pleural_Tissue"} xref: VHOG:0000394 xref: Wikipedia:Pleura relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0009778 {source="https://github.com/obophenotype/uberon/issues/86"} ! pleural sac property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png xsd:anyURI property_value: RO:0002175 NCBITaxon:8782 {source="BGEE:AN", source="ISBN:978-0030223693"} property_value: UBPROP:0000001 "The serous membrane that covers the lungs and lines the pleural cavity. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.264][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000394", ontology="VHOG", source="ISBN:0124020607", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "pleural" xsd:string property_value: UBPROP:0000012 "In MA, is_a cavity lining (which we equate to parietal). In FMA, is_a (viscous) serous membrane (which includes mesothelium plus connective tissue). Note the MA structure should probably be associated with the mesothelium of pleura in FMA. JB/EHDAA2 argues the term 'pleura' is best used for the mesothelial lining (thus excluding connective tissue). See https://github.com/obophenotype/uberon/issues/86" xsd:string [Term] id: UBERON:0001004 name: respiratory system namespace: uberon def: "Functional system which consists of structures involved in respiration." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Respiratory_system] subset: efo_slim subset: functional_classification subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "apparatus respiratorius" EXACT [] synonym: "apparatus respiratorius" RELATED [BTO:0000203] synonym: "Atmungssystem" RELATED [BTO:0000203] synonym: "respiratory system" EXACT [] synonym: "systema respiratorium" RELATED LATIN [Wikipedia:Respiratory_system] xref: AAO:0000541 xref: BTO:0000203 xref: CALOHA:TS-1319 xref: EFO:0000804 xref: EHDAA2:0001604 xref: EHDAA:2203 xref: EMAPA:16727 xref: EV:0100036 xref: FMA:7158 xref: GAID:78 xref: MA:0000327 xref: MAT:0000030 xref: MESH:D012137 xref: MIAA:0000030 xref: NCIT:C12779 xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA xref: SCTID:278197002 xref: TAO:0000272 xref: UMLS:C0035237 {source="ncithesaurus:Respiratory_System"} xref: VHOG:0000202 xref: Wikipedia:Respiratory_system xref: XAO:0000117 xref: ZFA:0000272 is_a: UBERON:0000467 ! anatomical system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg xsd:anyURI property_value: RO:0002161 NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} property_value: UBPROP:0000001 "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000541", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "There is no doubt that the primitive pattern of vertebrate air-breathing is the buccal pulse pump found in actinopterygian fishes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000202", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.599 and Figure 18-23", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001005 name: respiratory airway namespace: uberon def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] subset: grouping_class subset: uberon_slim synonym: "airway" BROAD [http://orcid.org/0000-0002-6601-2165] synonym: "airways" BROAD PLURAL [http://orcid.org/0000-0002-6601-2165] xref: FMA:265130 xref: SCTID:361380005 xref: Wikipedia:Trachea relationship: part_of UBERON:0001004 ! respiratory system property_value: IAO:0000232 "This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED). As a grouping class this is quite vague, as it is not clear where the airway begins and ends" xsd:string [Term] id: UBERON:0001042 name: chordate pharynx namespace: uberon def: "A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]." [http://www.feedexp.org] comment: Consider generalizing to deuterostome pharynx subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pharynx" BROAD SENSU [FMA:46688] xref: AAO:0000967 xref: BTO:0001049 xref: CALOHA:TS-0785 xref: EFO:0000836 xref: EHDAA2:0001458 xref: EHDAA:2947 xref: EMAPA:16706 xref: EV:0100065 xref: FMA:46688 xref: GAID:155 xref: galen:Pharynx xref: MA:0000432 xref: MESH:A03.867 xref: NCIT:C12425 xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA xref: SCTID:181211006 xref: TAO:0000056 xref: UMLS:C0031354 {source="ncithesaurus:Pharynx"} xref: VHOG:0000462 xref: Wikipedia:Pharynx xref: XAO:0003227 xref: ZFA:0000056 relationship: part_of UBERON:0001004 ! respiratory system property_value: UBPROP:0000001 "A funnel-shaped fibromuscular tube that conducts food to the ESOPHAGUS, and air to the LARYNYX and LUNGS. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH:A03.867]." xsd:string {source="MESH:A03.867"} property_value: UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000056", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA:0000056, ZFIN:ZDB-PUB-961014-576]." xsd:string {source="ZFIN:ZDB-PUB-961014-576"} property_value: UBPROP:0000001 "The portion of the alimentary canal between the mouth and the oesophagus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000462", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000002 "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: develops_from respiratory system (UBERON:0001004)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO"} property_value: UBPROP:0000002 "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (UBERON:0001004)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000967", ontology="AAO"} property_value: UBPROP:0000003 "(...) the earliest vertebrates possessed unjointed internal and external branchial arches, and musculature encircling the pharynx.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000462", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) Box essay 13.1 and Box figure I, p.502-503", source="http://bgee.unil.ch/"} property_value: UBPROP:0000012 "MA/FMA pharynx not part of digestive/alimentary system, we are consistent with this scheme" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001051 name: hypopharynx namespace: uberon def: "Bottom part of the pharynx that connects to the esophagus." [Wikipedia:Hypopharynx] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "laryngeal pharynx" EXACT [FMA:54877] synonym: "laryngopharynx" EXACT [FMA:54877] synonym: "pars laryngea pharyngis" RELATED LATIN [Wikipedia:Hypopharynx] synonym: "pars laryngea pharyngis" RELATED [BTO:0001740] xref: BTO:0001740 xref: CALOHA:TS-2020 xref: EFO:0001388 xref: EHDAA2:0004574 xref: EV:0100068 xref: FMA:54880 xref: GAID:338 xref: MA:0001796 xref: MESH:A03.867.490 xref: NCIT:C12246 xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA xref: SCTID:281490009 xref: UMLS:C0020629 {source="ncithesaurus:Hypopharynx"} xref: VHOG:0000445 xref: Wikipedia:Hypopharynx relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by Illu:pharynx.jpg xsd:anyURI property_value: UBPROP:0000001 "The inferior portion of the pharynx, between the epiglottis and the larynx. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000445", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/hypopharynx"} property_value: UBPROP:0000007 "hypopharyngeal" xsd:string [Term] id: UBERON:0001062 name: anatomical entity namespace: uberon def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] subset: upper_level xref: AAO:0010841 xref: AEO:0000000 xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 xref: FBbt:10000000 xref: FBbt_root:00000000 xref: FMA:62955 xref: HAO:0000000 xref: MA:0000001 xref: NCIT:C12219 xref: TAO:0100000 xref: TGMA:0001822 xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"} xref: WBbt:0000100 xref: XAO:0000000 xref: ZFA:0100000 is_a: BFO:0000004 ! independent continuant [Term] id: UBERON:0001102 name: cartilage of main bronchus namespace: uberon def: "A cartilage that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic] synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic] synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic] synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic] synonym: "cartilaginous ring of main bronchus" EXACT [EMAPA:19092] synonym: "main bronchial cartilage" EXACT [] synonym: "main bronchus cartilage" EXACT [] synonym: "primary bronchus cartilage" EXACT [OBOL:automatic] synonym: "principal bronchus cartilage" EXACT [OBOL:automatic] xref: EMAPA:19092 xref: FMA:13117 xref: MA:0001846 is_a: UBERON:0001956 ! cartilage of bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0001103 name: diaphragm namespace: uberon def: "A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control" [MP:0002279] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "diaphragm muscle" EXACT [BTO:0000341] synonym: "diaphragm of thorax" EXACT [] synonym: "midriff" RELATED [BTO:0000341] synonym: "phren" RELATED [BTO:0000341] synonym: "thoracic diaphragm" EXACT [] xref: BTO:0000341 xref: CALOHA:TS-0198 xref: EFO:0000937 xref: EHDAA2:0003495 xref: EMAPA:17701 xref: EV:0100376 xref: FMA:13295 xref: GAID:158 xref: MA:0001904 xref: MAT:0000502 xref: MESH:D003964 xref: NCIT:C12702 xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA xref: SCTID:181614006 xref: UMLS:C0011980 {source="ncithesaurus:Diaphragm"} xref: VHOG:0000713 xref: Wikipedia:Thoracid_diaphragm is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001004 ! respiratory system property_value: RO:0002161 NCBITaxon:8782 {source="Wikipedia:Thoracic_diaphragm#Comparative_anatomy_and_evolution"} property_value: UBPROP:0000001 "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." xsd:string {source="GO:0060539"} property_value: UBPROP:0000003 "The mammals are characterized by a diaphragm, which separates the thoracic portion of the body cavity from the abdominal region and assists in drawing air into the lungs and forcing it out. Modern reptiles lack a muscular diaphragm and it is reasonable to suppose that the diaphragm developed as a new device that made possible a large degree of oxygen intake for active animals. The change may have taken place during the transition from reptile to mammal (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000713", ontology="VHOG", source="ISBN:978-0471384618 Colbert EH, Evolution of the vertebrates: a history of the backboned animals through time (2001) p.278", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "phrenic" xsd:string property_value: UBPROP:0000008 "The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3]" xsd:string property_value: UBPROP:0000008 "The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution)" xsd:string property_value: UBPROP:0000009 "barrier between thoracic and abdominal cavities; stop gastric contents from refluxing into the oesophagus" xsd:string property_value: UBPROP:0000009 "breathing control" xsd:string property_value: UBPROP:0000011 "originate from the cervical somites, likely C3-C5[PMID:23586979]" xsd:string [Term] id: UBERON:0001557 name: upper respiratory tract namespace: uberon def: "The segment of the respiratory tract that starts proximally with the nose and ends distally with the cricoid cartilage, before continuing to the trachea." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim xref: EHDAA2:0002136 xref: EMAPA:17669 xref: FMA:45661 xref: MA:0000442 xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ xref: SCTID:361381009 xref: VHOG:0000406 xref: Wikipedia:Upper_respiratory_tract is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg xsd:anyURI property_value: UBPROP:0000012 "Some specify that the glottis (vocal cords) is the defining line between the upper and lower respiratory tracts;[2] yet even others make the line at the cricoid cartilage. The FMA includes nose, nasopharynx, oropharynx and larynx[WP]" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001558 name: lower respiratory tract namespace: uberon def: "The segment of the respiratory tract that starts proximally with the trachea and includes all distal structures including the lungs[WP,modified]" [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lower_respiratory_tract] subset: pheno_slim subset: uberon_slim synonym: "lower respiratory system" EXACT [] xref: EHDAA2:0001036 xref: EMAPA:16738 xref: FMA:45662 xref: MA:0000435 xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g xref: SCTID:281488008 xref: VHOG:0000382 xref: Wikipedia:Lower_respiratory_tract is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg xsd:anyURI [Term] id: UBERON:0001566 name: cricothyroid muscle namespace: uberon def: "Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage." [MFMO:0000324] subset: uberon_slim synonym: "cricothyroid" EXACT [] synonym: "cricothyroideus" EXACT [] synonym: "M. cricothyroideus" EXACT LATIN [Wikipedia:Cricothyroid_muscle] synonym: "musculus cricothyroideus" EXACT LATIN [FMA:46417, FMA:TA] xref: EMAPA:19270 xref: FMA:46417 xref: MA:0002284 xref: MFMO:0000324 xref: NCIT:C32404 xref: SCTID:244809007 xref: UMLS:C0224178 {source="ncithesaurus:Cricothyroid_Muscle"} xref: Wikipedia:Cricothyroid_muscle is_a: UBERON:0006328 ! laryngeal intrinsic muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png xsd:anyURI [Term] id: UBERON:0001568 name: muscle of larynx namespace: uberon def: "The muscles associated with the larynx." [MP:0002263] subset: pheno_slim synonym: "laryngeal muscle" EXACT [] synonym: "larynx muscle" EXACT [] synonym: "larynx muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of larynx" EXACT [OBOL:automatic] synonym: "musculi laryngeales" EXACT [] xref: BTO:0001626 xref: EMAPA:35473 xref: FMA:46562 xref: GAID:144 xref: MA:0001768 xref: MESH:D007821 xref: NCIT:C32934 xref: SCTID:181744001 xref: UMLS:C0023054 {source="ncithesaurus:Laryngeal_Muscle"} xref: Wikipedia:Muscles_of_larynx is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0004478 {source="prolog"} ! musculature of larynx [Term] id: UBERON:0001570 name: inferior pharyngeal constrictor namespace: uberon def: "The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor_muscle] subset: uberon_slim synonym: "constrictor inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "constrictor muscle of pharynx inferior" EXACT [MA:0002279] synonym: "constrictor pharyngis inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "constrictores pharyngis caudales" EXACT [] synonym: "inferior constrictor" EXACT [FMA:46623] synonym: "inferior constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "inferior constrictor muscle" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "inferior constrictor of pharynx" EXACT [FMA:46623] synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623] synonym: "inferior pharyngeal constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle] synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:46623, FMA:TA] synonym: "musculus constrictor pharyngis inferior" EXACT LATIN [FMA:TA] synonym: "musculus constrictor pharyngis inferior" RELATED LATIN [Wikipedia:Inferior_pharyngeal_constrictor_muscle] xref: EMAPA:18965 xref: FMA:46623 xref: MA:0002279 xref: SCTID:244803008 xref: Wikipedia:Inferior_pharyngeal_constrictor_muscle is_a: UBERON:0001566 ! cricothyroid muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png xsd:anyURI property_value: UBPROP:0000001 "This is a pharyngeal arch 4/6 muscle that is integral to the pharyngeal tube, participates in oral/pharyngeal behaviors, is innervated by the pharyngeal plexus of the vagus n. and attaches to the laryngeal cartilages and the midline raphe.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0001707 name: nasal cavity namespace: uberon def: "An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cavitas nasalis" RELATED [BTO:0002096] synonym: "cavitas nasi" RELATED LATIN [Wikipedia:Nasal_cavity] synonym: "cavitas nasi" RELATED [BTO:0002096] synonym: "cavity of nose" EXACT [] synonym: "cavity of olfactory apparatus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cavum nasi" RELATED LATIN [Wikipedia:Nasal_cavity] synonym: "nasal canal" EXACT [ZFA:0000130] synonym: "nasal conduit space" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity] synonym: "nasal pit" RELATED [] synonym: "olfactory cavity" RELATED [] synonym: "olfactory chamber" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory chamber cavity" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130] xref: AAO:0000314 xref: BTO:0002096 xref: EHDAA2:0001226 xref: EHDAA:6801 xref: EMAPA:17604 xref: FMA:54378 xref: GAID:350 xref: MA:0000284 xref: MESH:D009296 xref: NCIT:C12424 xref: SCTID:263481003 xref: TAO:0000130 xref: UMLS:C0027423 {source="ncithesaurus:Nasal_Cavity"} xref: VHOG:0000271 xref: Wikipedia:Nasal_cavity xref: ZFA:0000130 relationship: part_of UBERON:0015788 {source="cjm"} ! olfactory apparatus chamber property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg xsd:anyURI property_value: IAO:0000116 "define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong." xsd:string property_value: UBPROP:0000001 "a large air filled space above and behind the nose in the middle of the face[WP][Wikipedia:Nasal_cavity]." xsd:string {source="Wikipedia:Nasal_cavity"} property_value: UBPROP:0000001 "Saclike space internal to the nasal capsule lined by respiratory and sensory epithelium and glandular tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000314", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000003 "Despite significant modification to the nasal cavity within Archosauria and its extreme hypertrophy and supraorbital development in Lambeosaurinae, the neural olfactory system and the olfactory region of the nasal cavity proper retain their plesiomorphic positions and associations, suggesting that this system is highly conserved in vertebrate evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000271", ontology="VHOG", source="DOI:10.1666/0094-8373(2006)032[0109:NCHACC]2.0.CO;2 Evans DC, Nasal cavity homologies and cranial crest function in lambeosaurine dinosaurs. Paleobiology (2006)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "in humans, the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures" xsd:string {source="HP"} [Term] id: UBERON:0001724 name: sphenoidal sinus namespace: uberon def: "One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [MESH:A04.531.621.827, Wikipedia:Sphenoidal_sinus] subset: pheno_slim subset: uberon_slim synonym: "sinus sphenoidalis" RELATED LATIN [Wikipedia:Sphenoidal_sinus] synonym: "sphenoid sinus" EXACT [] xref: FMA:54683 xref: GAID:359 xref: MA:0001795 xref: MESH:D013101 xref: NCIT:C12278 xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA xref: SCTID:181207000 xref: UMLS:C0037885 {source="ncithesaurus:Sphenoid_Sinus"} xref: Wikipedia:Sphenoidal_sinus is_a: UBERON:0001825 ! paranasal sinus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png xsd:anyURI [Term] id: UBERON:0001728 name: nasopharynx namespace: uberon def: "the section of the pharynx that lies above the soft palate" [MGI:cwg, MP:0002251] subset: pheno_slim subset: uberon_slim synonym: "epipharynx" RELATED [Wikipedia:Pharynx] synonym: "nasal part of pharynx" EXACT [] synonym: "Nasenrachenraum" RELATED [BTO:0000662] synonym: "pars nasalis pharyngis" RELATED LATIN [Wikipedia:Nasopharynx] synonym: "rhinopharynx" EXACT [] xref: BTO:0000662 xref: CALOHA:TS-0663 xref: EHDAA2:0001239 xref: EHDAA:7086 xref: EMAPA:17670 xref: EV:0100066 xref: FMA:54878 xref: GAID:339 xref: MA:0000443 xref: MAT:0000447 xref: MESH:A03.867.557 xref: NCIT:C12423 xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA xref: SCTID:181200003 xref: UMLS:C0027442 {source="ncithesaurus:Nasopharynx"} xref: VHOG:0000375 xref: Wikipedia:Nasopharynx is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: part_of UBERON:0001042 ! chordate pharynx relationship: part_of UBERON:0001557 ! upper respiratory tract property_value: depicted:by Illu:pharynx.jpg xsd:anyURI property_value: UBPROP:0000001 "The uppermost of the three regions of the throat (pharynx), situated behind the nasal cavity and extending from the posterior nares to the level above the soft palate. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000375", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/nasopharynx"} property_value: UBPROP:0000007 "nasopharyngeal" xsd:string property_value: UBPROP:0000008 "In humans - in front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane" xsd:string [Term] id: UBERON:0001729 name: oropharynx namespace: uberon def: "the portion of the pharynx that lies between the soft palate and the upper edge of the epiglottis" [MGI:cwg, MP:0002252] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "mesopharynx" RELATED [Wikipedia:Pharynx] synonym: "oral part of pharynx" EXACT [] synonym: "pars oralis pharyngis" RELATED LATIN [Wikipedia:Oropharynx] xref: BTO:0005257 xref: CALOHA:TS-0718 xref: EFO:0001976 xref: EHDAA2:0004082 xref: EMAPA:25094 xref: EV:0100067 xref: FMA:54879 xref: GAID:340 xref: MA:0000351 xref: MAT:0000446 xref: MESH:A03.867.603 xref: NCIT:C12762 xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA xref: SCTID:263376008 xref: UMLS:C0521367 {source="ncithesaurus:Oropharynx"} xref: VHOG:0000457 xref: VSAO:0000034 xref: Wikipedia:Oropharynx xref: XAO:0004048 relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by Illu:pharynx.jpg xsd:anyURI property_value: UBPROP:0000001 "One of the three anatomic divisions of the pharynx that lies posterior to the mouth and is continuous above with the nasopharynx and below with the laryngopharynx. It extends behind the mouth from the soft palate above to the level of the hyoid bone below and contains the palatine and lingual tonsils. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000457", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/oropharynx"} property_value: UBPROP:0000007 "oropharyngeal" xsd:string [Term] id: UBERON:0001730 name: extrinsic ligament of larynx namespace: uberon synonym: "laryngeal extrinsic ligament" EXACT [] xref: EMAPA:37627 {source="MA:th"} xref: FMA:54921 xref: MA:0001756 xref: SCTID:279550004 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0001732 name: pharyngeal tonsil namespace: uberon def: "the lymph tissue in the roof and posterior wall of the nasopharynx" [MGI:cwg, MP:0002384] subset: pheno_slim subset: uberon_slim synonym: "adenoid" EXACT [] synonym: "nasopharyngeal tonsil" EXACT [] synonym: "Rachenmandel" RELATED [BTO:0000777] synonym: "tonsil of Luschka" EXACT [] synonym: "tonsilla pharyngea" RELATED LATIN [Wikipedia:Pharyngeal_tonsil] synonym: "tonsilla pharyngealis" EXACT LATIN [FMA:54970, FMA:TA] xref: BTO:0000777 xref: EV:0100054 xref: FMA:54970 xref: GAID:1288 xref: MA:0000774 xref: MESH:A15.382.520.604.084 xref: NCIT:C33318 xref: SCTID:181199001 xref: UMLS:C0001428 {source="ncithesaurus:Pharyngeal_Tonsil"} xref: Wikipedia:Pharyngeal_tonsil is_a: UBERON:0002372 ! tonsil is_a: UBERON:0012330 {source="cjm"} ! nasal-associated lymphoid tissue relationship: part_of UBERON:0001728 ! nasopharynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/be/Gray994-adenoid.png xsd:anyURI [Term] id: UBERON:0001735 name: tonsillar ring namespace: uberon def: "the circular lymphoid tissue formed by the lingual, pharyngeal, and facial tonsils" [MGI:cwg, MP:0002379] subset: pheno_slim subset: uberon_slim synonym: "anulus lymphoideus pharyngis" EXACT LATIN [FMA:55070, FMA:TA] synonym: "oropharyngeal lymphoid tissue" EXACT [] synonym: "pharyngeal lymphatic ring" EXACT [] synonym: "pharyngeal lymphoid ring" EXACT [] synonym: "Waldeyer's ring" EXACT [] synonym: "Waldeyer's tonsillar ring" EXACT [] xref: FMA:55070 xref: MA:0000752 xref: NCIT:C73468 xref: SCTID:56411004 xref: UMLS:C0459892 {source="ncithesaurus:Waldeyers_Tonsillar_Ring"} xref: Wikipedia:Waldeyer's_ring relationship: part_of UBERON:0001042 ! chordate pharynx property_value: seeAlso FMA:79771 [Term] id: UBERON:0001737 name: larynx namespace: uberon def: "A continuation of the pharynx that is involved in breathing, sound production, and protecting the trachea against food aspiration." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Larynx] subset: efo_slim subset: pheno_slim subset: uberon_slim xref: AAO:0000268 xref: BTO:0001208 xref: CALOHA:TS-0532 xref: EFO:0000838 xref: EHDAA2:0004063 xref: EMAPA:18333 xref: EV:0100039 xref: FMA:55097 xref: GAID:108 xref: galen:Larynx xref: MA:0000414 xref: MAT:0000187 xref: MESH:D007830 xref: MIAA:0000187 xref: NCIT:C12420 xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA xref: SCTID:181212004 xref: UMLS:C0023078 {source="ncithesaurus:Larynx"} xref: VHOG:0001279 xref: Wikipedia:Larynx xref: XAO:0003081 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: part_of UBERON:0000065 ! respiratory tract property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg xsd:anyURI property_value: UBPROP:0000001 "An anatomical cluster consisting of the epiglottus, the arytenoid cartilages, the thyroid cartilage, the cricoid cartilage and the muscles, membranes, and ligaments connecting them, and also of the mucosal covering these structures.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000268", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000003 "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001279", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "laryngeal" xsd:string [Term] id: UBERON:0001738 name: thyroid cartilage namespace: uberon def: "the largest of the laryngeal cartilages" [ISBN:0-397-51047-0, MGI:cwg, MP:0002260] subset: pheno_slim subset: uberon_slim synonym: "cartilago thyroidea" RELATED [Wikipedia:Thyroid_cartilage] synonym: "cartilago thyroidea" RELATED LATIN [Wikipedia:Thyroid_cartilage] synonym: "laryngeal prominence" RELATED [Wikipedia:Thyroid_cartilage] synonym: "pomus" RELATED [Wikipedia:Thyroid_cartilage] synonym: "pomus adamus" RELATED [Wikipedia:Thyroid_cartilage] xref: BTO:0003655 xref: EHDAA2:0002030 xref: EHDAA:9395 xref: EMAPA:18698 xref: FMA:55099 xref: GAID:112 xref: MA:0001764 xref: MESH:A02.165.507.870 xref: NCIT:C33780 xref: SCTID:263483000 xref: UMLS:C0040126 {source="ncithesaurus:Thyroid_Cartilage"} xref: VHOG:0001365 xref: Wikipedia:Thyroid_cartilage is_a: UBERON:0001739 ! laryngeal cartilage relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg xsd:anyURI property_value: UBPROP:0000001 "The largest cartilage of the larynx, having two broad processes that join anteriorly to form the Adam's apple. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/thyroid+cartilage"} property_value: UBPROP:0000003 "[In anura] a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) [In mammals] Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001739 name: laryngeal cartilage namespace: uberon def: "The cartilaginous structures that support the larynx." [MP:0002256] subset: pheno_slim synonym: "cartilage of larynx" EXACT [FMA:55108] synonym: "cartilagines laryngeales" EXACT PLURAL [] synonym: "larynx cartilage" EXACT [VHOG:0001550] xref: BTO:0003660 xref: EHDAA:8157 xref: EMAPA:18697 xref: FMA:55108 xref: GAID:107 xref: MA:0001758 xref: MESH:A02.165.507 xref: NCIT:C12281 xref: SCTID:263482005 xref: UMLS:C0023050 {source="ncithesaurus:Laryngeal_Cartilage"} xref: VHOG:0001550 is_a: UBERON:0003406 ! cartilage of respiratory system relationship: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0010212 ! laryngeal apparatus property_value: UBPROP:0000003 "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001550", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} property_value: UBPROP:0000202 FMA:64159 [Term] id: UBERON:0001740 name: arytenoid cartilage namespace: uberon def: "the paired triangular laryngeal cartilages located postlaterally at the level of the thyroid cartilage" [ISBN:0-397-51047-0, MGI:cwg, MP:0002257] subset: pheno_slim subset: uberon_slim synonym: "arytenoid" EXACT [EMAPA:18695] synonym: "arytenoids" RELATED [Wikipedia:Arytenoid_cartilage] synonym: "cartilagines arytenoidea" RELATED LATIN [Wikipedia:Arytenoid_cartilage] synonym: "cartilago arytaenoidea" RELATED [AAO:0000674] synonym: "cartilago arytenoidea" RELATED [] xref: AAO:0000674 xref: EMAPA:17977 xref: EMAPA:18695 xref: FMA:55109 xref: GAID:109 xref: MA:0001759 xref: MESH:A02.165.507.083 xref: NCIT:C32148 xref: SCTID:264446005 xref: UMLS:C0003943 {source="ncithesaurus:Arytenoid_Cartilage"} xref: Wikipedia:Arytenoid_cartilage is_a: UBERON:0001739 ! laryngeal cartilage property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png xsd:anyURI property_value: UBPROP:0000001 "Paired, anteroposteriorly elongated cartilages that are associated with the vocal cords. These cartilages are medially separated and hemispherical, and their concave side faces ventromedially.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000674", ontology="AAO", source="AAO:LAP"} [Term] id: UBERON:0001741 name: corniculate cartilage namespace: uberon def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilages] subset: uberon_slim synonym: "cartilage of Santorini" EXACT [] synonym: "cartilagines corniculata" EXACT LATIN [Wikipedia:Corniculate_cartilage] synonym: "Santorini's cartilage" EXACT [] xref: EMAPA:37484 {source="MA:th"} xref: FMA:55110 xref: MA:0001885 xref: NCIT:C32373 xref: SCTID:278989005 xref: UMLS:C0225556 {source="ncithesaurus:Corniculate_Cartilage"} xref: Wikipedia:Corniculate_cartilages is_a: UBERON:0003583 ! larynx connective tissue relationship: part_of UBERON:0001737 {source="FMA"} ! larynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png xsd:anyURI [Term] id: UBERON:0001742 name: epiglottic cartilage namespace: uberon def: "The most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259] subset: uberon_slim xref: EMAPA:37522 {source="MA:th"} xref: FMA:55112 xref: MA:0001763 xref: NCIT:C32526 xref: SCTID:278990001 xref: UMLS:C0458526 {source="ncithesaurus:Epiglottic_Cartilage"} is_a: UBERON:0001739 ! laryngeal cartilage relationship: part_of UBERON:0000388 ! epiglottis property_value: UBPROP:0000012 "laryngeal cartilage in MP" xsd:string {external_ontology="MP"} [Term] id: UBERON:0001743 name: ligament of larynx namespace: uberon def: "A ligament that is part of a larynx and connexts the cartilages of the larynx" [http://education.yahoo.com/reference/gray/subjects/subject/236] synonym: "laryngeal ligament" EXACT [] synonym: "larynx ligament" EXACT [MA:0001755] xref: EMAPA:37626 {source="MA:th"} xref: FMA:55131 xref: MA:0001755 xref: NCIT:C32933 xref: SCTID:279508004 xref: UMLS:C0458519 {source="ncithesaurus:Laryngeal_Ligament"} relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001760 name: frontal sinus namespace: uberon def: "The frontal sinus occupies the dorsal part of the skull medial to the orbit. It overlaps cranial and nasal cavities and is often referred to as the conchofrontal sinus. ." [MURDOCH:753, Wikipedia:Frontal_sinus] subset: pheno_slim subset: uberon_slim synonym: "cavity of frontal bone" EXACT [FMA:57417] synonym: "sinus frontales" RELATED LATIN [Wikipedia:Frontal_sinus] xref: FMA:57417 xref: GAID:357 xref: MA:0001793 xref: MESH:D005626 xref: NCIT:C12277 xref: OpenCyc:Mx4rvqMUR5wpEbGdrcN5Y29ycA xref: SCTID:181205008 xref: UMLS:C0016734 {source="ncithesaurus:Frontal_Sinus"} xref: Wikipedia:Frontal_sinus is_a: UBERON:0001825 {source="MA"} ! paranasal sinus property_value: depicted:by Nnh:front.svg xsd:anyURI property_value: UBPROP:0000008 "A unique feature in the horse is that the frontal sinus communicates with the caudal maxillary sinus via the frontomaxillary opening" xsd:string {source="MURDOCh"} [Term] id: UBERON:0001761 name: future foramen cecum namespace: uberon def: "A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132]" [ISBN:0124020607, VHOG:0000826] subset: uberon_slim synonym: "foramen caecum" BROAD [MA:0000725] synonym: "foramen cecum" BROAD [] synonym: "future foramen caecum" BROAD [] synonym: "future foramen cecum of tongue" BROAD [] xref: EHDAA2:0000550 xref: EHDAA:2150 xref: EHDAA:2977 xref: EMAPA:17069 xref: VHOG:0000826 relationship: part_of UBERON:0003091 ! thyroid primordium [Term] id: UBERON:0001764 name: maxillary sinus namespace: uberon def: "One of the paired paranasal sinuses, located in the body of the maxilla, communicating with the middle meatus of the nasal cavity." [MESH:A04.531.621.578, Wikipedia:Maxillary_sinus] subset: pheno_slim subset: uberon_slim synonym: "antrum of Highmore" EXACT [] synonym: "Highmore antrum" RELATED [MESH:A04.531.621.578] synonym: "maxillary antrum" RELATED [MESH:A04.531.621.578] synonym: "sinus maxilliaris" EXACT LATIN [Wikipedia:Maxillary_sinus] xref: CALOHA:TS-2231 xref: FMA:57715 xref: GAID:358 xref: MA:0001794 xref: MESH:D008443 xref: NCIT:C12275 xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA xref: SCTID:181204007 xref: UMLS:C0024957 {source="ncithesaurus:Maxillary_Sinus"} xref: Wikipedia:Maxillary_sinus is_a: UBERON:0001825 ! paranasal sinus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray1199.png xsd:anyURI property_value: RO:0002161 NCBITaxon:33554 [Term] id: UBERON:0001824 name: mucosa of larynx namespace: uberon def: "The mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261] synonym: "laryngeal mucosa" EXACT [] synonym: "laryngeal mucous membrane" RELATED [EMAPA:18334] synonym: "larynx mucosa" EXACT [] synonym: "larynx mucosa of organ" EXACT [OBOL:automatic] synonym: "larynx mucous membrane" EXACT [OBOL:automatic] synonym: "larynx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of larynx" EXACT [OBOL:automatic] synonym: "mucous membrane of larynx" EXACT [] synonym: "organ mucosa of larynx" EXACT [OBOL:automatic] synonym: "tunica mucosa laryngis" EXACT LATIN [FMA:59662, FMA:TA] xref: EMAPA:18334 xref: FMA:59662 xref: GAID:301 xref: MA:0001766 xref: MESH:D007820 xref: NCIT:C49246 xref: SCTID:361940006 xref: UMLS:C0023053 {source="ncithesaurus:Laryngeal_Mucosa"} is_a: UBERON:0000379 ! tracheal mucosa relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001825 name: paranasal sinus namespace: uberon def: "the paired air-filled cavities surrounded by the bones of the face that are lined by mucous membranes and are continuous with the nasal cavity" [ISBN:0-683-40008-8, MP:0002240] subset: pheno_slim subset: uberon_slim synonym: "nasal sinus" RELATED [GAID:355] synonym: "sinus" BROAD [] xref: CALOHA:TS-2082 xref: EHDAA:6489 xref: EMAPA:35662 xref: EV:0100038 xref: FMA:59679 xref: GAID:355 xref: MA:0000431 xref: MESH:D010256 xref: NCIT:C12763 xref: SCTID:181203001 xref: UMLS:C0030471 {source="ncithesaurus:Paranasal_Sinus"} xref: Wikipedia:Paranasal_sinuses relationship: part_of UBERON:0001004 ! respiratory system property_value: depicted:by Nnh:front.svg xsd:anyURI property_value: UBPROP:0000011 "Arise as epithelial lined diverticula of the lining of the nasal cavity. The extent of sinus development varies with species, most of the development occurs postnatally" xsd:string property_value: UBPROP:0000202 FMA:76587 [Term] id: UBERON:0001826 name: nasal cavity mucosa namespace: uberon def: "The mucous membrane that lines the nasal cavity[MP]." [MP:0002238] subset: pheno_slim synonym: "mucosa of nose" EXACT [FMA:59684] synonym: "mucous membrane of nose" EXACT [FMA:59684] synonym: "nasal mucosa" RELATED [] synonym: "tunica mucosa nasalis" EXACT [] synonym: "tunica mucosa nasi" EXACT LATIN [FMA:59684, FMA:TA] xref: BTO:0000912 xref: CALOHA:TS-0657 xref: EMAPA:36026 xref: FMA:59684 xref: GAID:302 xref: SCTID:310211009 xref: Wikipedia:Mucous_membrane_of_nose is_a: UBERON:0000379 ! tracheal mucosa relationship: part_of UBERON:0015788 ! olfactory apparatus chamber property_value: IAO:0000116 "TODO - check lining vs part of. split olfactory and nasal mucosa?" xsd:string [Term] id: UBERON:0001901 name: epithelium of trachea namespace: uberon alt_id: UBERON:0003227 def: "the epithelial lining of the trachea which contains numerous ciliated cells" [ISBN:0-397-51047-0, MGI:cwg, MP:0002285] subset: pheno_slim synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic] synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic] synonym: "epithelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea epithelial tissue" EXACT [OBOL:automatic] synonym: "trachea epithelium" EXACT [] synonym: "tracheal epithelium" EXACT [] synonym: "windpipe epithelial tissue" EXACT [OBOL:automatic] synonym: "windpipe epithelium" EXACT [OBOL:automatic] xref: BTO:0001389 xref: CALOHA:TS-1061 xref: EHDAA2:0002069 xref: EHDAA:5007 xref: EMAPA:16855 xref: EMAPA:18409 xref: FMA:62015 xref: MA:0001862 xref: NCIT:C33797 xref: UMLS:C1179002 {source="ncithesaurus:Tracheal_Epithelium"} xref: VHOG:0001045 is_a: UBERON:0008397 ! tracheobronchial epithelium relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0001951 name: epithelium of nasopharynx namespace: uberon alt_id: UBERON:0003237 def: "An epithelium that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic] synonym: "nasopharyngeal epithelium" RELATED [BTO:0004480] synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "nasopharynx epithelium" EXACT [] synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic] xref: BTO:0004480 xref: CALOHA:TS-0662 xref: EHDAA2:0001241 xref: EHDAA:7090 xref: EMAPA:17672 xref: FMA:62452 xref: MA:0001865 xref: NCIT:C49263 xref: UMLS:C1179157 {source="ncithesaurus:Nasopharynx_Epithelium"} xref: VHOG:0001038 is_a: UBERON:0003351 ! pharyngeal epithelium is_a: UBERON:0004814 ! upper respiratory tract epithelium relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0001952 name: epithelium of oropharynx namespace: uberon def: "An epithelium that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] synonym: "oropharyngeal epithelium" EXACT [] synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "oropharynx epithelium" EXACT [MA:0001605] xref: EHDAA2:0004083 xref: EMAPA:37705 {source="MA:th"} xref: FMA:62453 xref: MA:0001605 xref: NCIT:C49264 xref: UMLS:C1179158 {source="ncithesaurus:Oropharynx_Epithelium"} is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0001729 ! oropharynx property_value: UBPROP:0000012 "Composition varies with species and time. This is classified as nonkeratinizing stratified squamous in FMA, unilaminar in EHDAA2; the majority of the pharyngeal epithelium is unilaminar in zebrafish" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001955 name: epithelium of respiratory bronchiole namespace: uberon def: "An epithelium that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "epithelial tissue of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "respiratory bronchiole epithelium" EXACT [] xref: EMAPA:35730 xref: FMA:62498 xref: MA:0001773 xref: NCIT:C48943 xref: UMLS:C1179179 {source="ncithesaurus:Respiratory_Bronchiole_Epithelium"} is_a: UBERON:0002051 ! epithelium of bronchiole relationship: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0001956 name: cartilage of bronchus namespace: uberon def: "The hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [MP:0010988] subset: pheno_slim synonym: "bronchi cartilage" EXACT [OBOL:automatic] synonym: "bronchial cartilage" EXACT [] synonym: "bronchial cartilage ring" EXACT [MP:0010988] synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic] synonym: "bronchus cartilage" EXACT [] synonym: "cartilage of bronchi" EXACT [OBOL:automatic] synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic] synonym: "cartilagines bronchiales" EXACT PLURAL [] xref: EMAPA:35192 xref: FMA:62649 xref: MA:0001835 xref: NCIT:C49209 xref: SCTID:278980009 xref: UMLS:C0225604 {source="ncithesaurus:Bronchus_Cartilage"} is_a: UBERON:0003603 ! lower respiratory tract cartilage relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001957 name: submucosa of bronchus namespace: uberon def: "A submucosa that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi submucosa" EXACT [OBOL:automatic] synonym: "bronchial submucosa" EXACT [] synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic] synonym: "bronchus submucosa" EXACT [] synonym: "submucosa of bronchi" EXACT [OBOL:automatic] synonym: "submucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "submucous layer of bronchi" RELATED [BTO:0002108] synonym: "tela submucosa bronchi" EXACT LATIN [FMA:62653, FMA:TA] xref: BTO:0002108 xref: EMAPA:37449 {source="MA:th"} xref: FMA:62653 xref: MA:0001837 xref: NCIT:C49214 xref: SCTID:85546005 xref: UMLS:C0225601 {source="ncithesaurus:Bronchus_Submucosa"} is_a: UBERON:0004777 ! respiratory system submucosa relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001958 name: terminal bronchiole epithelium namespace: uberon def: "An epithelium that lines a terminal bronchiole." [http://orcid.org/0000-0002-6601-2165] synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "epithelial tissue of terminal bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "epithelium of terminal bronchiole" EXACT [FMA:62794] synonym: "terminal bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "terminal bronchiole epithelium" EXACT [] xref: EMAPA:36283 xref: FMA:62794 xref: MA:0001774 xref: NCIT:C33755 xref: UMLS:C1179400 {source="ncithesaurus:Terminal_Bronchiole_Epithelium"} is_a: UBERON:0002051 ! epithelium of bronchiole relationship: part_of UBERON:0002187 ! terminal bronchiole property_value: UBPROP:0000008 "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string [Term] id: UBERON:0001963 name: bronchial-associated lymphoid tissue namespace: uberon def: "A diffuse collection of lymphpoid cells that participate in airway immune responses" [ISBN:0123813611] comment: Lymphoid tissue associated with airways in mice has functional similarities to human BALT[ISBN:0123813611] Notes: FMA classifies this as organized, not diffuse subset: pheno_slim synonym: "BALT" RELATED [] synonym: "bronchus associated lymphoid tissue" EXACT [] xref: FMA:62821 xref: MA:0000135 xref: NCIT:C32234 xref: UMLS:C1179418 {source="ncithesaurus:Bronchus-Associated_Lymphoid_Tissue"} relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001997 name: olfactory epithelium namespace: uberon alt_id: UBERON:0004853 def: "A sensory epithelium inside the nasal cavity that is responsible for detecting odors[WP]." [Wikipedia:Olfactory_epithelium] comment: Genes: V1Rs, Trpc2 present in lamprey subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "main olfactory epithelium" EXACT [NCBIBook:NBK55971] synonym: "MOE" RELATED ABBREVIATION [NCBIBook:NBK55971] synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325] synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] synonym: "olfactory membrane" EXACT [BIRNLEX:2703] synonym: "olfactory sensory epithelium" EXACT [] synonym: "pseudostratified main olfactory epithelium" RELATED [http://www.ncbi.nlm.nih.gov/books/NBK55971/] synonym: "sensory olfactory epithelium" EXACT [] xref: AAO:0010158 xref: BIRNLEX:2703 xref: BTO:0000108 xref: CALOHA:TS-0703 xref: EFO:0001972 xref: EHDAA2:0001228 xref: EHDAA:4774 xref: EMAPA:17606 xref: FMA:64803 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 {source="BIRNLEX:2703"} xref: MA:0001325 xref: MAT:0000445 xref: NCIT:C33203 xref: SCTID:37623003 xref: TAO:0000554 xref: UMLS:C0599332 {source="BIRNLEX:2703"} xref: UMLS:C0599332 {source="ncithesaurus:Olfactory_Epithelium"} xref: VHOG:0000985 xref: Wikipedia:Olfactory_epithelium xref: ZFA:0000554 is_a: UBERON:0005384 ! nasal cavity epithelium relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png xsd:anyURI property_value: UBPROP:0000001 "Sensory lining of the medial wall, roof and anterior aspects of the main olfactory cavity (cavum principale).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000002 "relationship loss: part_of principal cavity (AAO:0000992)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO"} [Term] id: UBERON:0002031 name: epithelium of bronchus namespace: uberon def: "An epithelium that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] subset: efo_slim subset: pheno_slim synonym: "bronchi epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchi epithelium" EXACT [OBOL:automatic] synonym: "bronchial epithelium" EXACT [] synonym: "bronchial trunk epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk epithelium" EXACT [OBOL:automatic] synonym: "bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchus epithelium" EXACT [] synonym: "epithelial tissue of bronchi" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchus" EXACT [OBOL:automatic] synonym: "epithelium of bronchi" EXACT [OBOL:automatic] synonym: "epithelium of bronchial trunk" EXACT [OBOL:automatic] xref: BTO:0001845 xref: CALOHA:TS-1240 xref: EFO:0000307 xref: EMAPA:32691 xref: FMA:67782 xref: MA:0001839 xref: NCIT:C32231 xref: UMLS:C0599333 {source="ncithesaurus:Bronchial_Epithelium"} is_a: UBERON:0008397 ! tracheobronchial epithelium relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0002041 name: terminal bronchus namespace: uberon subset: organ_slim xref: EMAPA:37763 {source="MA:th"} xref: FMA:68416 xref: MA:0000440 is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0002048 name: lung namespace: uberon def: "Respiration organ that develops as an outpocketing of the esophagus." [http://orcid.org/0000-0002-6601-2165] comment: Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP] subset: efo_slim subset: major_organ subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "pulmo" EXACT LATIN [] xref: AAO:0000275 xref: AAO:0010567 xref: BTO:0000763 xref: CALOHA:TS-0568 xref: EFO:0000934 xref: EHDAA2:0001042 xref: EHDAA:1554 xref: EHDAA:2205 xref: EMAPA:16728 xref: EV:0100042 xref: FMA:7195 xref: GAID:345 xref: galen:Lung xref: MA:0000415 xref: MAT:0000135 xref: MESH:D008168 xref: MIAA:0000135 xref: NCIT:C12468 xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:181216001 xref: UMLS:C0024109 {source="ncithesaurus:Lung"} xref: VHOG:0000310 xref: Wikipedia:Lung xref: XAO:0000119 is_a: UBERON:0000171 ! respiration organ relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs property_value: RO:0002161 NCBITaxon:32443 {editor="BGEE:fb", source="https://github.com/obophenotype/uberon/issues/701"} property_value: RO:0002161 NCBITaxon:7777 {editor="BGEE:fb", source="https://github.com/obophenotype/uberon/issues/701"} property_value: seeAlso https://github.com/obophenotype/uberon/issues/701 xsd:anyURI property_value: UBPROP:0000001 "Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010567", ontology="AAO", source="AAO:SBH"} property_value: UBPROP:0000003 "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000310", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210, DOI:10.1371/journal.pone.0024019 Zheng W, Wang Z, Collins JE, Andrews RM, Stemple D, Gong Z, Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung. PLoS One (2011)", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "pulmonary" xsd:string property_value: UBPROP:0000008 "respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi" xsd:string [Term] id: UBERON:0002051 name: epithelium of bronchiole namespace: uberon def: "An epithelium that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "bronchiolar epithelium" EXACT [BTO:0001866] synonym: "bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchiole epithelium" EXACT [] synonym: "epithelial tissue of bronchiole" EXACT [OBOL:automatic] synonym: "epithelial tissue of lobular bronchiole" EXACT [OBOL:automatic] synonym: "epithelium of lobular bronchiole" EXACT [OBOL:automatic] synonym: "lobular bronchiole epithelial tissue" EXACT [OBOL:automatic] synonym: "lobular bronchiole epithelium" EXACT [OBOL:automatic] xref: BTO:0001866 xref: CALOHA:TS-0570 xref: EMAPA:32693 xref: FMA:62497 xref: FMA:69077 xref: MA:0001772 xref: NCIT:C48942 xref: UMLS:C1181296 {source="ncithesaurus:Bronchiole_Epithelium"} is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0002031 ! epithelium of bronchus is_a: UBERON:0004802 {source="BTO"} ! respiratory tract epithelium relationship: part_of UBERON:0002186 ! bronchiole relationship: part_of UBERON:0005039 ! mucosa of bronchiole property_value: UBPROP:0000012 "in FMA2 and FMA3, lobular bronchiole is an exact synonym of bronchiole; however there are two distinct terms for the corresponding epithelium." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002167 name: right lung namespace: uberon def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung] subset: pheno_slim subset: uberon_slim xref: EHDAA2:0001730 xref: EHDAA:4969 xref: EMAPA:17661 xref: FMA:7309 xref: MA:0000426 xref: NCIT:C33483 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:361967000 xref: UMLS:C0225706 {source="ncithesaurus:Right_Lung"} xref: VHOG:0000301 xref: Wikipedia:Right_lung is_a: UBERON:0002048 ! lung property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png xsd:anyURI property_value: UBPROP:0000003 "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000301", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210", source="http://bgee.unil.ch/"} property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0002168 name: left lung namespace: uberon def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]" [FMA:FMA, Wikipedia:Left_lung] subset: pheno_slim subset: uberon_slim xref: EHDAA2:0000943 xref: EHDAA:4947 xref: EMAPA:17653 xref: FMA:7310 xref: MA:0000425 xref: NCIT:C32967 xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA xref: SCTID:361982005 xref: UMLS:C0225730 {source="ncithesaurus:Left_Lung"} xref: VHOG:0000618 xref: Wikipedia:Left_lung is_a: UBERON:0002048 ! lung property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png xsd:anyURI property_value: UBPROP:0000003 "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000618", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210", source="http://bgee.unil.ch/"} property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0002169 name: alveolar sac namespace: uberon alt_id: UBERON:0008871 def: "The small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters" [MP:0010902, Wikipedia:Alveolar_sac] subset: pheno_slim subset: uberon_slim synonym: "air sac" RELATED [MP:0010902] synonym: "pulmonary alveolar sac" EXACT [MP:0010902] synonym: "sacculus alveolaris" EXACT [FMA:7317] xref: BTO:0000061 xref: EMAPA:35119 xref: FMA:7317 xref: MA:0000418 xref: NCIT:C32057 xref: OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA xref: SCTID:361964007 xref: UMLS:C0225691 {source="ncithesaurus:Alveolar_Sac"} xref: Wikipedia:Alveolar_sac is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0000117 ! respiratory tube relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system relationship: part_of UBERON:0008874 {source="FMA"} ! pulmonary acinus [Term] id: UBERON:0002170 name: upper lobe of right lung namespace: uberon def: "The lobe of the right lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "lobus superior (pulmo dexter)" EXACT LATIN [FMA:7333, FMA:TA] synonym: "lobus superior pulmonis dextri" EXACT LATIN [FMA:TA] synonym: "right cranial lobe of lung" EXACT [] synonym: "right lung cranial lobe" EXACT [MA:0000429] synonym: "right lung superior lobe" RELATED [MA:0000429] synonym: "right upper lobe" EXACT [FMA:7333] synonym: "right upper lobe of lung" EXACT [FMA:7333] synonym: "superior lobe of right lung" EXACT [FMA:7333] synonym: "upper lobe of right lung" EXACT [galen:UpperLobeOfRightLung] xref: EHDAA2:0001747 xref: EHDAA:4987 xref: EMAPA:17991 xref: FMA:7333 xref: galen:UpperLobeOfRightLung xref: MA:0000429 xref: NCIT:C33023 xref: SCTID:361969002 xref: UMLS:C1261074 {source="ncithesaurus:Upper_Lobe_of_the_Right_Lung"} xref: VHOG:0000859 is_a: UBERON:0006518 ! right lung lobe is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002171 name: lower lobe of right lung namespace: uberon def: "The lobe of the right lung that is furtherst from the head." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "inferior lobe of right lung" EXACT [FMA:7337] synonym: "lobus inferior (pulmo dexter)" EXACT LATIN [FMA:7337, FMA:TA] synonym: "lobus inferior pulmonis dextri" EXACT LATIN [FMA:7337, FMA:TA] synonym: "lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung] synonym: "right caudal lobe of lung" EXACT [] synonym: "right lower lobe" EXACT [FMA:7337] synonym: "right lower lobe of lung" EXACT [FMA:7337] synonym: "right lung caudal lobe" RELATED [MA:0000428] synonym: "right lung inferior lobe" RELATED [MA:0000428] xref: EHDAA2:0001740 xref: EHDAA:4979 xref: EMAPA:17986 xref: FMA:7337 xref: galen:LowerLobeOfRightLung xref: MA:0000428 xref: NCIT:C33022 xref: SCTID:361976007 xref: UMLS:C1261075 {source="ncithesaurus:Lower_Lobe_of_the_Right_Lung"} xref: VHOG:0000857 is_a: UBERON:0006518 ! right lung lobe is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002172 name: alveolar atrium namespace: uberon synonym: "alveolus of lung atrium" EXACT [OBOL:automatic] synonym: "atrium alveolare" EXACT [] synonym: "atrium of alveolus" EXACT [] synonym: "atrium of alveolus of lung" EXACT [OBOL:automatic] synonym: "atrium of lung alveolus" EXACT [OBOL:automatic] synonym: "lung alveolus atrium" EXACT [OBOL:automatic] xref: EMAPA:37390 {source="MA:th"} xref: FMA:7340 xref: MA:0000419 xref: SCTID:201806004 relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0002173 name: pulmonary alveolar duct namespace: uberon def: "the respiratory conducting tubes distal to the respiratory bronchiole that lead to the alveolar sacs and the alveoli" [ISBN:0-683-40008-8, MGI:cwg, MP:0002271] subset: pheno_slim subset: uberon_slim synonym: "alveolar duct" EXACT [MA:0000417] synonym: "ductus alveolaris" EXACT LATIN [FMA:7341, FMA:TA] synonym: "respiratory alveolar duct" EXACT [] xref: EMAPA:32694 xref: FMA:7341 xref: MA:0000417 xref: NCIT:C32056 xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA xref: UMLS:C0391892 {source="ncithesaurus:Alveolar_Duct"} xref: Wikipedia:Alveolar_duct is_a: UBERON:0000117 ! respiratory tube relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0006524 ! alveolar system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8f/Gray975.png xsd:anyURI property_value: UBPROP:0000008 "In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation" xsd:string [Term] id: UBERON:0002174 name: middle lobe of right lung namespace: uberon def: "In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]." [Wikipedia:Middle_lobe_of_right_lung] comment: Called 'middle lobe of lung' in FMA subset: pheno_slim subset: uberon_slim synonym: "intermediate lobe of right lung" EXACT [] synonym: "lobus medius pulmonis dextri" EXACT LATIN [FMA:7383, FMA:TA] synonym: "middle lobe of lung" BROAD [FMA:7383] synonym: "right lung middle lobe" EXACT [] synonym: "right lung, middle lobe" EXACT [] synonym: "right medial lobe" BROAD [] synonym: "right medial lobe of lung" EXACT [] synonym: "right middle lobe" BROAD [] synonym: "right middle lobe of lung" EXACT [] xref: EMAPA:17997 xref: FMA:7383 xref: galen:MiddleLobeOfRightLung xref: MA:0000430 xref: NCIT:C12286 xref: SCTID:361973004 xref: UMLS:C0225757 {source="ncithesaurus:Middle_Lobe_of_the_Right_Lung"} xref: Wikipedia:Middle_lobe_of_right_lung is_a: UBERON:0006518 ! right lung lobe is_a: UBERON:0008955 ! middle lobe of lung relationship: part_of UBERON:0002167 ! right lung property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png xsd:anyURI [Term] id: UBERON:0002177 name: right main bronchus namespace: uberon def: "The main bronchus on the right side." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Right_main_bronchus] subset: pheno_slim subset: uberon_slim synonym: "bronchus principalis dexter" RELATED LATIN [Wikipedia:Right_main_bronchus] synonym: "right bronchus" RELATED [] synonym: "right major bronchus" EXACT [] synonym: "right primary bronchus" EXACT [Wikipedia:Right_main_bronchus] synonym: "right principal bronchus" EXACT [Wikipedia:Right_main_bronchus] xref: EMAPA:37365 {source="MA:th"} xref: FMA:7395 xref: MA:0001849 xref: NCIT:C33486 xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvoIuvJwpEbGdrcN5Y29ycA xref: SCTID:361955002 xref: UMLS:C0225608 {source="ncithesaurus:Right_Main_Bronchus"} xref: Wikipedia:Right_main_bronchus is_a: UBERON:0002182 ! main bronchus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg xsd:anyURI property_value: UBPROP:0000008 "Divides into 3 lobar bronchi in humans" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0002178 name: left main bronchus namespace: uberon def: "The main bronchus on the left side." [Wikipedia:Left_main_bronchus] subset: pheno_slim subset: uberon_slim synonym: "bronchus principalis sinister" RELATED LATIN [Wikipedia:Left_main_bronchus] synonym: "left bronchus" RELATED [] synonym: "left major bronchus" EXACT [] synonym: "left primary bronchus" EXACT [Wikipedia:Left_main_bronchus] synonym: "left principal bronchus" EXACT [Wikipedia:Left_main_bronchus] xref: EMAPA:37364 {source="MA:th"} xref: FMA:7396 xref: MA:0001843 xref: NCIT:C32968 xref: SCTID:361959008 xref: UMLS:C0225630 {source="ncithesaurus:Left_Main_Bronchus"} xref: Wikipedia:Left_main_bronchus is_a: UBERON:0002182 ! main bronchus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg xsd:anyURI property_value: UBPROP:0000008 "Divides into 2 lobar bronchi in humans" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0002182 name: main bronchus namespace: uberon def: "One of two branches of the trachea." [Wikipedia:Main_bronchus] subset: efo_slim subset: organ_slim subset: uberon_slim synonym: "bronchus principalis" EXACT [FMA:7405] synonym: "extrapulmonary bronchus" EXACT [ISBN:0123813611] synonym: "mainstem bronchus" EXACT [] synonym: "major bronchus" EXACT [] synonym: "primary bronchus" EXACT [FMA:7405] synonym: "principal bronchus" EXACT [FMA:7405] synonym: "proximal bronchus" RELATED [] xref: EHDAA2:0001044 xref: EHDAA:3072 xref: EMAPA:16849 xref: FMA:7405 xref: MA:0000438 xref: NCIT:C12284 xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA xref: SCTID:245508000 xref: UMLS:C0024496 {source="ncithesaurus:Main_Bronchus"} xref: VHOG:0000370 xref: Wikipedia:Main_bronchus is_a: UBERON:0002185 ! bronchus property_value: UBPROP:0000008 "In humans, histologically identical to trachea." xsd:string [Term] id: UBERON:0002183 name: lobar bronchus namespace: uberon def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [GO:0060482, Wikipedia:Secondary_bronchus] subset: organ_slim subset: uberon_slim synonym: "bronchi lobaris" EXACT LATIN [Wikipedia:Secondary_bronchus] synonym: "lobar bronchi" RELATED PLURAL [Wikipedia:Secondary_bronchus] synonym: "secondary bronchi" RELATED PLURAL [Wikipedia:Secondary_bronchus] synonym: "secondary bronchus" EXACT [FMA:7406, Wikipedia:Secondary_bronchus] xref: EHDAA:4955 xref: EHDAA:4963 xref: EHDAA:4977 xref: EHDAA:4985 xref: EHDAA:4993 xref: EHDAA:8175 xref: EHDAA:8187 xref: EHDAA:8203 xref: EHDAA:8213 xref: EHDAA:8225 xref: EMAPA:32696 xref: FMA:7406 xref: MA:0000437 xref: NCIT:C32998 xref: OpenCyc:Mx4rwQMLXJwpEbGdrcN5Y29ycA xref: SCTID:245509008 xref: UMLS:C0225653 {source="ncithesaurus:Lobar_Bronchus"} xref: Wikipedia:Secondary_bronchus is_a: UBERON:0035767 ! intrapulmonary bronchus relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg xsd:anyURI property_value: UBPROP:0000010 "They have relatively large lumens that are lined by respiratory epithelium. There is a smooth muscle layer below the epithelium arranged as two ribbons of muscle that spiral in opposite directions. This smooth muscle layer contains seromucous glands. Irregularly arranged plates of hyaline cartilage surround the smooth muscle. These plates give structural support to the bronchus and maintain the patency of the lumen." xsd:string [Term] id: UBERON:0002184 name: segmental bronchus namespace: uberon def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [Wikipedia:Segmental_bronchus] subset: organ_slim subset: uberon_slim synonym: "tertiary bronchus" EXACT [] xref: EHDAA:7043 xref: EHDAA:7049 xref: EHDAA:7058 xref: EHDAA:7064 xref: EHDAA:7070 xref: EMAPA:37739 {source="MA:th"} xref: FMA:7407 xref: MA:0000439 xref: NCIT:C33526 xref: OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA xref: SCTID:245513001 xref: UMLS:C0444439 {source="ncithesaurus:Segmental_Bronchus"} xref: VHOG:0001446 xref: Wikipedia:Segmental_bronchus is_a: UBERON:0035767 ! intrapulmonary bronchus relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg xsd:anyURI [Term] id: UBERON:0002185 name: bronchus namespace: uberon def: "the upper conducting airways of the lung; these airways arise from the terminus of the trachea" [ISBN:0-397-51047-0, MESH:A04.411.125, MGI:cwg, MP:0002264] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "bronchi" EXACT PLURAL [] synonym: "bronchial tissue" RELATED [BTO:0001340] synonym: "bronchial trunk" EXACT [FMA:7409] xref: BTO:0001340 xref: CALOHA:TS-1229 xref: EFO:0000932 xref: EMAPA:32689 xref: EV:0100041 xref: FMA:7409 xref: GAID:346 xref: MA:0000436 xref: MAT:0000133 xref: MESH:D001980 xref: MIAA:0000133 xref: NCIT:C12683 xref: SCTID:181215002 xref: UMLS:C0006255 {source="ncithesaurus:Bronchus"} xref: VHOG:0000262 xref: Wikipedia:Bronchus xref: XAO:0000121 is_a: UBERON:0000117 ! respiratory tube relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg xsd:anyURI property_value: RO:0002161 NCBITaxon:8507 {source="Wikipedia"} property_value: UBPROP:0000001 "Each of the two primary divisions of the trachea leading respectively into the right and the left lung. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000262", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "bronchial" xsd:string property_value: UBPROP:0000008 "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue" xsd:string [Term] id: UBERON:0002186 name: bronchiole namespace: uberon def: "the conducting airway of the lungs found terminal to the bronchi; these structures contain neither cartilage nor mucous-secreting glands; the epithelium of the bronchioles becomes thinner with each branching" [ISBN:0-397-51047-0, MGI:cwg, MP:0002267] subset: pheno_slim subset: uberon_slim synonym: "bronchioli" RELATED PLURAL [] synonym: "bronchiolus" RELATED [BTO:0002375] synonym: "lobular bronchiole" EXACT [FMA:7410] xref: BTO:0002375 xref: CALOHA:TS-2003 xref: EHDAA:8171 xref: EHDAA:8183 xref: EHDAA:8199 xref: EHDAA:8221 xref: EMAPA:32697 xref: FMA:7410 xref: MA:0000422 xref: NCIT:C12684 xref: OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA xref: SCTID:278982001 xref: UMLS:C0006270 {source="ncithesaurus:Bronchiole"} xref: VHOG:0000675 xref: Wikipedia:Bronchiole is_a: UBERON:0000117 ! respiratory tube relationship: part_of UBERON:0002048 {source="MA"} ! lung relationship: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0007196 {source="FMA"} ! tracheobronchial tree relationship: part_of UBERON:0010368 {source="ncit"} ! pulmonary lobule property_value: depicted:by Alveoli:diagram.png xsd:anyURI property_value: UBPROP:0000007 "bronchiolar" xsd:string property_value: UBPROP:0000010 "lacks submucosa and cartilage plates; they have 3 layers: mucosa, muscular layer and outer layer" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0002187 name: terminal bronchiole namespace: uberon def: "the last conducting structure of non-respiratory bronchioles; after this point, the airways have alveoli in their walls" [ISBN:0-397-51047-0, MGI:cwg, MP:0002268] subset: pheno_slim subset: uberon_slim synonym: "bronchioli terminalis" RELATED LATIN [Wikipedia:Terminal_bronchiole] synonym: "bronchiolus terminalis" EXACT LATIN [] synonym: "terminal bronchiole tube" RELATED [] xref: BTO:0003223 xref: EMAPA:36282 xref: FMA:7411 xref: MA:0000424 xref: NCIT:C33754 xref: OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA xref: SCTID:278981008 xref: UMLS:C0225666 {source="ncithesaurus:Terminal_Bronchiole"} xref: Wikipedia:Terminal_bronchiole is_a: UBERON:0002186 ! bronchiole property_value: depicted:by Alveoli:diagram.png xsd:anyURI [Term] id: UBERON:0002188 name: respiratory bronchiole namespace: uberon def: "A bronchiole that is the first segment of the respiratory zone." [ISBN:0123813611, Wikipedia:Respiratory_bronchiole] subset: pheno_slim subset: uberon_slim synonym: "bronchiolus respiratorii" EXACT LATIN [Wikipedia:Respiratory_bronchiole] synonym: "bronchiolus respiratorius" EXACT LATIN [FMA:7412] xref: BTO:0003222 xref: EMAPA:35729 xref: FMA:7412 xref: MA:0000423 xref: NCIT:C33465 xref: OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA xref: SCTID:128517006 xref: UMLS:C1261270 {source="ncithesaurus:Respiratory_Bronchiole"} xref: Wikipedia:Respiratory_bronchiole is_a: UBERON:0002186 ! bronchiole relationship: part_of UBERON:0008874 {source="ISBN:0123813611"} ! pulmonary acinus property_value: depicted:by Alveoli:diagram.png xsd:anyURI property_value: UBPROP:0000008 "mice have few or none of these structures, with the terminal bronchioles transitioning directly to the alveolary ducts" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0002202 name: submucosa of trachea namespace: uberon def: "A submucosa that is part of a trachea." [OBOL:automatic] subset: pheno_slim synonym: "submucosa of windpipe" EXACT [OBOL:automatic] synonym: "submucous layer of trachea" RELATED [BTO:0002115] synonym: "trachea submucosa" EXACT [] synonym: "tracheal submucosa" EXACT [] synonym: "windpipe submucosa" EXACT [OBOL:automatic] xref: BTO:0002115 xref: EMAPA:35879 xref: FMA:7472 xref: MA:0001860 xref: NCIT:C49307 xref: SCTID:4419000 xref: UMLS:C0225586 {source="ncithesaurus:Trachea_Submucosa"} is_a: UBERON:0004777 ! respiratory system submucosa relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0002232 name: olfactory gland namespace: uberon def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [Wikipedia:Olfactory_glands] subset: organ_slim subset: pheno_slim synonym: "Bowman's gland" RELATED [] synonym: "gland of Bowman" RELATED [] synonym: "glandulae olfactoriae" RELATED LATIN [Wikipedia:Olfactory_glands] synonym: "olfactory gland of Bowman" EXACT [] xref: AAO:0010162 xref: BTO:0001697 xref: EMAPA:35613 xref: FMA:75801 xref: MA:0000287 xref: SCTID:368891001 xref: Wikipedia:Olfactory_glands is_a: UBERON:0012278 ! gland of nasal mucosa relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png xsd:anyURI property_value: UBPROP:0000001 "Multicellular mucous glands of the olfactory epithelium, present only in adults.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010162", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0002299 name: alveolus of lung namespace: uberon def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "alveoli" RELATED PLURAL [BTO:0000060] synonym: "alveolus" BROAD [] synonym: "alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus] synonym: "alveolus pulmonis" RELATED LATIN [Wikipedia:Pulmonary_alveolus] synonym: "lung alveolus" EXACT [] synonym: "pulmonary alveolus" EXACT [FMA:7318] synonym: "respiratory alveoli" RELATED PLURAL [] synonym: "respiratory alveolus" EXACT [] xref: BTO:0000060 xref: CALOHA:TS-0031 xref: EFO:0001985 xref: EMAPA:32682 xref: EV:0100043 xref: FMA:7318 xref: GAID:349 xref: MA:0000420 xref: MESH:D011650 xref: SCTID:361364000 xref: VHOG:0001445 xref: Wikipedia:Pulmonary_alveolus relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002169 {source="FMA"} ! alveolar sac relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system property_value: depicted:by Alveolus:diagram.svg xsd:anyURI [Term] id: UBERON:0002338 name: lamina propria of bronchus namespace: uberon def: "A lamina propria that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi lamina propria" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchi lamina propria mucosae" EXACT [OBOL:automatic] synonym: "bronchial lamina propria" RELATED [EMAPA:35194] synonym: "bronchial trunk lamina propria" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina propria mucosae" EXACT [OBOL:automatic] synonym: "bronchus lamina propria" EXACT [] synonym: "bronchus lamina propria mucosa" EXACT [OBOL:automatic] synonym: "bronchus lamina propria mucosae" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of bronchus" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina propria mucosae of bronchus" EXACT [OBOL:automatic] synonym: "lamina propria of bronchi" EXACT [OBOL:automatic] synonym: "lamina propria of bronchial trunk" EXACT [OBOL:automatic] xref: EMAPA:35194 xref: FMA:86619 xref: MA:0001836 xref: NCIT:C49212 xref: UMLS:C1707054 {source="ncithesaurus:Bronchus_Lamina_Propria"} is_a: UBERON:0000031 ! lamina propria of trachea relationship: part_of UBERON:0000410 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! bronchial mucosa relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0002339 name: epithelium of lobar bronchus namespace: uberon def: "The tissue made up of epithelial cells that lines the inside of the lobar bronchus." [GO:0060481] synonym: "epithelial tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of secondary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of secondary bronchus" EXACT [OBOL:automatic] synonym: "lobar bronchial epithelium" EXACT [] synonym: "lobar bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "lobar bronchus epithelium" EXACT [] synonym: "secondary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "secondary bronchus epithelium" EXACT [OBOL:automatic] xref: EMAPA:32695 xref: FMA:86624 xref: MA:0001842 is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0002340 name: epithelium of main bronchus namespace: uberon alt_id: UBERON:0003245 def: "An epithelium that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis epithelial tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "epithelial tissue of main bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "epithelium of bronchus principalis" EXACT [OBOL:automatic] synonym: "epithelium of primary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchial epithelium" EXACT [] synonym: "main bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "main bronchus epithelium" EXACT [] synonym: "primary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "primary bronchus epithelium" EXACT [OBOL:automatic] synonym: "principal bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "principal bronchus epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001047 xref: EHDAA:5003 xref: EMAPA:16851 xref: FMA:86625 xref: MA:0001847 xref: VHOG:0001034 is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0002341 name: epithelium of segmental bronchus namespace: uberon def: "An epithelium that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic] synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic] synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic] synonym: "segmental bronchial epithelium" EXACT [] synonym: "segmental bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "segmental bronchus epithelium" EXACT [] synonym: "tertiary bronchus epithelial tissue" EXACT [OBOL:automatic] synonym: "tertiary bronchus epithelium" EXACT [OBOL:automatic] xref: EMAPA:37740 {source="MA:th"} xref: FMA:86626 xref: MA:0001850 is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0002372 name: tonsil namespace: uberon def: "either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx" [MGI:cwg, MP:0002380] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "Mandel" RELATED [BTO:0001387] xref: BTO:0001387 xref: CALOHA:TS-1053 xref: EFO:0001401 xref: EMAPA:35871 xref: EV:0100052 xref: FMA:9609 xref: GAID:341 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=671 xref: MA:0000143 xref: MESH:A03.867.603.925 xref: NCIT:C12802 xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA xref: UMLS:C0836921 {source="ncithesaurus:Tonsil"} xref: UMLS:C1519547 {source="ncithesaurus:Tonsilar_Tissue"} xref: UMLS:C1519548 {source="ncithesaurus:Tonsillar_Lymphoid_Tissue"} xref: VHOG:0001139 xref: Wikipedia:Tonsil relationship: part_of UBERON:0001735 {source="cjm"} ! tonsillar ring property_value: IAO:0000232 "the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region" xsd:string [Term] id: UBERON:0002373 name: palatine tonsil namespace: uberon def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil] subset: efo_slim subset: uberon_slim synonym: "faucial tonsil" EXACT [] synonym: "tonsil" BROAD [] synonym: "tonsilla palatina" RELATED LATIN [Wikipedia:Palatine_tonsil] xref: BTO:0004714 xref: EFO:0001977 xref: EMAPA:35644 xref: EV:0100393 xref: FMA:9610 xref: MA:0000775 xref: MAT:0000291 xref: MIAA:0000291 xref: NCIT:C33250 xref: SCTID:265787001 xref: UMLS:C0040421 {source="ncithesaurus:Palatine_Tonsil"} xref: VHOG:0001140 xref: Wikipedia:Palatine_tonsil is_a: UBERON:0002372 ! tonsil property_value: depicted:by Illu:mouth.jpg xsd:anyURI property_value: RO:0002174 NCBITaxon:9989 {source="PMID:20144910"} property_value: UBPROP:0000011 "tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches" xsd:string {source="ISBN:1607950324"} [Term] id: UBERON:0002375 name: cricoid cartilage namespace: uberon def: "A cartilaginous ring that provides support for the arytenoid cartilages and forms the caudal part of the larynx." [AAO:LAP, FEED:rd, https://github.com/obophenotype/uberon/issues/257] subset: pheno_slim subset: uberon_slim synonym: "cartilaginis cricoideae" RELATED PLURAL [Wikipedia:Cricoid_cartilage] synonym: "cartilago cricoidea" EXACT LATIN [Wikipedia:Cricoid_cartilage] synonym: "cartilago cricoidea" RELATED PLURAL [] synonym: "cartilago cricotrachealis" RELATED [AAO:0000675] synonym: "cricoid" RELATED [Wikipedia:Cricoid_cartilage] synonym: "cricoidea" RELATED [Wikipedia:Cricoid_cartilage] synonym: "innominate cartilage" RELATED [VHOG:0001308] synonym: "krykoid cartilage" RELATED [Wikipedia:Cricoid_cartilage] xref: AAO:0000675 xref: EHDAA2:0000326 xref: EHDAA:9393 xref: EMAPA:18696 xref: FMA:9615 xref: GAID:110 xref: MA:0001762 xref: MESH:A02.165.507.211 xref: NCIT:C32400 xref: SCTID:263484006 xref: UMLS:C0010323 {source="ncithesaurus:Cricoid_Cartilage"} xref: VHOG:0001308 xref: Wikipedia:Cricoid_cartilage is_a: UBERON:0001739 {source="MA"} ! laryngeal cartilage property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png xsd:anyURI property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky property_value: UBPROP:0000001 "Cartilaginous ring that provides support for the arytenoid cartilages. Its ventral part is bent posteriorly to form a V.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000675", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000001 "The ringlike cartilage forming the caudal part of the larynx. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001308", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cricoid+cartilage"} property_value: UBPROP:0000003 "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001308", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} [Term] id: UBERON:0002400 name: parietal pleura namespace: uberon def: "The outer serous membrane of the pulmonary pleural." [UBERON:cjm, Wikipedia:Pulmonary_pleurae] comment: the part of the pleura external to the visceral pleura. It lines the inner surface of the chest wall, covers the diaphragm, and is reflected over the structures occupying the middle of the thorax subset: pheno_slim subset: uberon_slim synonym: "pleura parietalis" RELATED LATIN [Wikipedia:Parietal_pleura] xref: EMAPA:16776 xref: FMA:9733 xref: MA:0002488 xref: NCIT:C33273 xref: OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA xref: SCTID:361998003 xref: UMLS:C0225777 {source="ncithesaurus:Parietal_Pleura"} xref: VHOG:0001495 xref: Wikipedia:Parietal_pleura relationship: part_of UBERON:0000977 ! pleura [Term] id: UBERON:0002401 name: visceral pleura namespace: uberon def: "The inner serous membrane of the pulmonary pleural. The visceral pleura lines the lungs." [UBERON:cjm, Wikipedia:Pulmonary_pleurae] subset: pheno_slim subset: uberon_slim synonym: "lung mesothelium" RELATED [EHDAA2:0002205] synonym: "lung pleura" RELATED [] synonym: "pleura pulmonalis" EXACT LATIN [FMA:9734, FMA:TA] synonym: "pleura visceralis" EXACT LATIN [Wikipedia:Visceral_pleura] synonym: "pleura visceralis (pulmonalis)" EXACT [] synonym: "pulmonary pleura" RELATED INCONSISTENT [FMA:9734] synonym: "pulmonary visceral pleura" EXACT [] xref: EHDAA2:0002205 xref: EMAPA:16777 xref: FMA:9734 xref: MA:0002489 xref: NCIT:C33881 xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA xref: SCTID:361997008 xref: UMLS:C0225776 {source="ncithesaurus:Visceral_Pleura"} xref: VHOG:0001496 relationship: part_of UBERON:0000977 ! pleura relationship: part_of UBERON:0002048 {source="FMA"} ! lung property_value: UBPROP:0000001 "Each lung is invested by an exceedingly delicate serous membrane, the pleura, which is arranged in the form of a closed invaginated sac. A portion of the serous membrane covers the surface of the lung and dips into the fissures between its lobes; it is called the pulmonary pleura (or visceral pleura). The visceral pleura is attached directly to the lungs[Wikipedia:Visceral_pleura]." xsd:string {source="Wikipedia:Visceral_pleura"} property_value: UBPROP:0000012 "FMA treats this as part of the lungs" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002402 name: pleural cavity namespace: uberon def: "The fluid-filled cavity that lies between the visceral and parietal pleurae." [https://github.com/obophenotype/uberon/issues/86, Wikipedia:Pleural_cavity] subset: pheno_slim subset: uberon_slim synonym: "cavitas pleuralis" EXACT LATIN [Wikipedia:Pleural_cavity] synonym: "cavitum pleuralae" RELATED LATIN [Wikipedia:Pleural_cavity] synonym: "cavitum pleurale" RELATED LATIN [Wikipedia:Pleural_cavity] xref: BTO:0004422 xref: EHDAA2:0001475 xref: EMAPA:16773 xref: EMAPA:16774 xref: FMA:9740 xref: GAID:95 xref: MA:0000055 xref: MESH:A01.911.800.650 xref: NCIT:C12840 xref: OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA xref: SCTID:361999006 xref: UMLS:C0178802 {source="ncithesaurus:Pleural_Cavity"} xref: VHOG:0000581 xref: Wikipedia:Pleural_cavity relationship: part_of UBERON:0009778 ! pleural sac property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png xsd:anyURI property_value: UBPROP:0000003 "In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000581", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.205-206", source="http://bgee.unil.ch/"} property_value: UBPROP:0000009 "The contraction of the diaphragm creates a negative pressure within the pleural cavity which forces the lungs to expand resulting in passive exhalation and active inhalation. This breathing process can be made forceful through the contraction of the external intercostal muscles which forces the rib cage to expand and add to the negative pressure in the pleural cavity causing the lungs to fill with air. The fluid in the cavity provides lubrication and cushioning" xsd:string property_value: UBPROP:0000012 "the EHDAA2 class of the same is not equivalent. See https://github.com/obophenotype/uberon/issues/86" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0002453 name: ethmoid sinus namespace: uberon def: "the evaginations of the mucous membrane of the nasal cavity into the ethmoidal bony labyrinth, forming multiple small paranasal sinuses" [ISBN:0-683-40008-8, MP:0002245] subset: pheno_slim subset: uberon_slim synonym: "cellulae ethmoidales" RELATED LATIN [Wikipedia:Ethmoid_sinus] synonym: "ethmoidal air cell" RELATED [FMA:84115] synonym: "ethmoidal bone sinus" EXACT [Wikipedia:Ethmoid_bone_sinus] synonym: "ethmoidal sinus" EXACT [FMA:84115] xref: FMA:84115 xref: GAID:356 xref: MA:0001792 xref: MESH:D005005 xref: NCIT:C12276 xref: SCTID:181206009 xref: UMLS:C0015028 {source="ncithesaurus:Ethmoid_Sinus"} xref: Wikipedia:Ethmoid_bone_sinus is_a: UBERON:0001825 {source="FMA"} ! paranasal sinus property_value: depicted:by Nnh:front.svg xsd:anyURI [Term] id: UBERON:0002486 name: glottis namespace: uberon def: "the vocal apparatus of the larynx, which includes the vocal cords and the opening between them" [ISBN:0-397-51047-0, MGI:cwg, MP:0002255] subset: pheno_slim subset: uberon_slim xref: AAO:0010610 xref: BTO:0001627 xref: FMA:55414 xref: GAID:343 xref: MA:0002788 xref: MESH:D005931 xref: NCIT:C12724 xref: SCTID:264482000 xref: UMLS:C0017681 {source="ncithesaurus:Glottis"} xref: Wikipedia:Glottis relationship: part_of UBERON:0001737 ! larynx property_value: depicted:by Arytenoid:cartilage.png xsd:anyURI property_value: UBPROP:0000001 "A small, slit-like aperture lying longitudinally on the floor of the pharynx.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010610", ontology="AAO", source="AAO:BMZ"} [Term] id: UBERON:0002535 name: gill namespace: uberon def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [Wikipedia:Gill] comment: this term potentially applicable across multiple metazoa - see also the subclass 'pharyngeal arch derived gill' subset: functional_classification xref: AAO:0010171 xref: MESH:D005880 xref: Wikipedia:Gill relationship: part_of UBERON:0001004 ! respiratory system property_value: RO:0002161 NCBITaxon:32524 [Term] id: UBERON:0003091 name: thyroid primordium namespace: uberon def: "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [http://emedicine.medscape.com/article/845125-overview] subset: vertebrate_core synonym: "thyroid primordia" RELATED PLURAL [ZFA:0001081] xref: AAO:0011106 xref: BTO:0004709 xref: EHDAA2:0002033 xref: EHDAA:952 xref: EMAPA:16361 xref: NCIT:C34312 xref: TAO:0001081 xref: UMLS:C1519512 {source="ncithesaurus:Thyroid_Primordium"} xref: XAO:0000444 xref: ZFA:0001081 relationship: part_of UBERON:0001042 {source="VHOG"} ! chordate pharynx property_value: UBPROP:0000001 "Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle[ZFIN:curator]." xsd:string {source="ZFIN:curator"} property_value: UBPROP:0000008 "In all vertebrates the thyroid arises from the ventral aspect of the second pouch" xsd:string {source="PMID:16313389"} property_value: UBPROP:0000012 "Note that we follow EHDAA2 in dividing this into endoderm and mesenchyme. In this ontology we place the broad developmental relationship at this level, and include specific relationships to the pharyngeal endoderm at the level of the endoderm" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0003118 name: pharyngeal arch artery 1 namespace: uberon alt_id: UBERON:0004371 def: "The vessels formed within the first pair of branchial arches in embryogenesis" [MP:0010355] subset: pheno_slim subset: vertebrate_core synonym: "1st aortic arch artery" RELATED [EMAPA:16685] synonym: "1st arch artery" EXACT [EMAPA:16685] synonym: "1st branchial arch artery" RELATED [EMAPA:16685] synonym: "1st pharyngeal arch artery" RELATED [EMAPA:16685] synonym: "AA1" EXACT [ZFA:0005005] synonym: "aortic arch 1" EXACT [ZFA:0005005] synonym: "first aortic arch" EXACT [XAO:0000342] synonym: "first arch artery" RELATED [EMAPA:16685] synonym: "first branchial arch artery" EXACT [] synonym: "mandibular aortic arch" EXACT [ZFA:0005005] xref: AAO:0010415 xref: EHDAA2:0000007 xref: EMAPA:16202 xref: EMAPA:16685 xref: SCTID:308774003 xref: TAO:0005005 xref: VHOG:0000149 xref: XAO:0000342 xref: ZFA:0005005 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000008 "Disappears early in development in tetrapods" xsd:string property_value: UBPROP:0000012 "ZFA states that The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aortas" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0003119 name: pharyngeal arch artery 2 namespace: uberon alt_id: UBERON:0004372 def: "The vessels formed within the second pair of branchial arches in embryogenesis" [MP:0010356] subset: pheno_slim subset: vertebrate_core synonym: "2nd aortic arch artery" RELATED [EMAPA:16686] synonym: "2nd arch artery" EXACT [EHDAA2:0000051] synonym: "2nd branchial arch artery" RELATED [EMAPA:16686] synonym: "2nd pharyngeal arch artery" RELATED [EMAPA:16686] synonym: "AA2" EXACT [ZFA:0005006] synonym: "aortic arch 2" EXACT [ZFA:0005006] synonym: "hyoid aortic arch" EXACT [ZFA:0005006] synonym: "second aortic arch" EXACT [XAO:0000343] synonym: "second branchial arch artery" EXACT [] xref: AAO:0010418 xref: EHDAA2:0000051 xref: EMAPA:16203 xref: EMAPA:16686 xref: SCTID:308775002 xref: TAO:0005006 xref: VHOG:0000148 xref: Wikipedia:Aortic_arches#Arches_1_and_2 xref: XAO:0000343 xref: ZFA:0005006 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "The first and second arches disappear early, but the dorsal end of the second gives origin to the stapedial artery, a vessel which atrophies in humans but persists in some mammals. It passes through the ring of the stapes and divides into supraorbital, infraorbital, and mandibular branches which follow the three divisions of the trigeminal nerve. The infraorbital and mandibular arise from a common stem, the terminal part of which anastomoses with the external carotid. On the obliteration of the stapedial artery this anastomosis enlarges and forms the internal maxillary artery, and the branches of the stapedial artery are now branches of this vessel. The common stem of the infraorbital and mandibular branches passes between the two roots of the auriculotemporal nerve and becomes the middle meningeal artery; the original supraorbital branch of the stapedial is represented by the orbital twigs of the middle meningeal[WP][Wikipedia:Aortic_arches#Arches_1_and_2]." xsd:string {source="Wikipedia:Aortic_arches#Arches_1_and_2"} property_value: UBPROP:0000001 "The second in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 2 that is part of hyoid arch.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010418", ontology="AAO", source="ISBN:0-02-377110-0"} [Term] id: UBERON:0003120 name: pharyngeal arch artery 3 namespace: uberon alt_id: UBERON:0004352 def: "The vessels formed within the third pair of branchial arches in embryogenesis" [MP:0006356] subset: pheno_slim subset: vertebrate_core synonym: "3rd aortic arch artery" RELATED [EMAPA:16687] synonym: "3rd arch artery" EXACT [EHDAA2:0000070] synonym: "3rd branchial arch artery" RELATED [EMAPA:16687] synonym: "3rd pharyngeal arch artery" RELATED [EMAPA:16687] synonym: "AA3" EXACT [ZFA:0005007] synonym: "aortic arch 3" EXACT [ZFA:0005007] synonym: "carotid arch" EXACT [Wikipedia:Aortic_arches#Arch_3] synonym: "third aortic arch" EXACT [XAO:0000344] synonym: "third branchial arch artery" EXACT [] xref: AAO:0010419 xref: EHDAA2:0000070 xref: EMAPA:16687 xref: SCTID:308776001 xref: TAO:0005007 xref: VHOG:0000147 xref: Wikipedia:Aortic_arches#Arch_3 xref: XAO:0000344 xref: ZFA:0005007 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005007", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The third aortic arch constitutes the commencement of the internal carotid artery, and is therefore named the carotid arch[WP][Wikipedia:Aortic_arches#Arch_3]." xsd:string {source="Wikipedia:Aortic_arches#Arch_3"} property_value: UBPROP:0000001 "The third in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 3 lies within the 3rd branchial arch and branches directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010419", ontology="AAO", source="ISBN:0-02-377110-0"} [Term] id: UBERON:0003121 name: pharyngeal arch artery 4 namespace: uberon alt_id: UBERON:0004350 def: "The vessels formed within the fourth pair of branchial arches in embryogenesis" [MP:0006354] comment: proximal right subclavian subset: pheno_slim subset: vertebrate_core synonym: "4th aortic arch artery" RELATED [EMAPA:17004] synonym: "4th arch artery" EXACT [EHDAA2:0000087] synonym: "4th branchial arch artery" RELATED [EMAPA:17004] synonym: "4th pharyngeal arch artery" RELATED [EMAPA:17004] synonym: "AA4" EXACT [ZFA:0005008] synonym: "aortic arch 4" EXACT [ZFA:0005008] synonym: "fourth aortic arch" EXACT [XAO:0000355] synonym: "fourth branchial arch artery" EXACT [] synonym: "systemic arch" RELATED [ISBN:0073040584, XAO:0000355] xref: AAO:0010420 xref: EHDAA2:0000087 xref: EMAPA:17004 xref: SCTID:308777005 xref: TAO:0005008 xref: Wikipedia:Aortic_arches#Arch_4 xref: XAO:0000355 xref: ZFA:0005008 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005008", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The forth in a series paired arterial connections between the dorsal and ventral aortae, lies within the 4th branchial arch. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010420", ontology="AAO", source="ISBN:0-02-377110-0"} property_value: UBPROP:0000001 "The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP][Wikipedia:Aortic_arches#Arch_4]." xsd:string {source="Wikipedia:Aortic_arches#Arch_4"} property_value: UBPROP:0000011 "Normally, the left fourth arch becomes the aortic arch, the right fourth arch contributes to the innominate artery[http://emedicine.medscape.com/article/899609-overview] in birds it is the right fourth arch which forms the permanent aorta" xsd:string [Term] id: UBERON:0003122 name: pharyngeal arch artery 5 namespace: uberon def: "The vessels formed within the fifth pair of pharyngeal arches in embryogenesis." [http://orcid.org/0000-0002-6601-2165] subset: vertebrate_core synonym: "AA5" EXACT [ZFA:0005009] synonym: "aortic arch 5" EXACT [ZFA:0005009] synonym: "fifth aortic arch" EXACT [XAO:0000352] xref: AAO:0010421 xref: SCTID:308778000 xref: TAO:0005009 xref: VHOG:0000145 xref: Wikipedia:Aortic_arches#Arch_5 xref: XAO:0000352 xref: ZFA:0005009 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005009", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The fifth arch disappears on both sides[WP][Wikipedia:Aortic_arches#Arch_5]." xsd:string {source="Wikipedia:Aortic_arches#Arch_5"} property_value: UBPROP:0000001 "The fifth in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010421", ontology="AAO", source="ISBN:0-02-377110-0"} property_value: UBPROP:0000008 "In humans the 5th arch disappears on both sides" xsd:string [Term] id: UBERON:0003123 name: pharyngeal arch artery 6 namespace: uberon alt_id: UBERON:0004351 def: "The vessels formed within the sixth pair of branchial arches in embryogenesis" [MP:0006355] subset: pheno_slim subset: vertebrate_core synonym: "6th aortic arch artery" RELATED [EMAPA:17005] synonym: "6th arch artery" EXACT [EMAPA:17005] synonym: "6th branchial arch artery" RELATED [EMAPA:17005] synonym: "6th pharyngeal arch artery" RELATED [EMAPA:17005] synonym: "AA6" EXACT [ZFA:0005016] synonym: "aortic arch 6" EXACT [ZFA:0005016] synonym: "pulmonary arch" RELATED [ISBN:0073040584] synonym: "sixth aortic arch" EXACT [XAO:0000353] synonym: "sixth branchial arch artery" EXACT [] xref: AAO:0010422 xref: EHDAA2:0000102 xref: EMAPA:17005 xref: SCTID:308779008 xref: TAO:0005016 xref: VHOG:0000144 xref: Wikipedia:Aortic_arches#Arch_6 xref: XAO:0000353 xref: ZFA:0005016 is_a: UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005016", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The sixth in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. It forms part of the pulmonary arteries, and in the later embryo, the ductus arteriosis. Aortic arches 5 and 6 together supply the trunk and tail with oxygenated blood.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010422", ontology="AAO", source="ISBN:0-02-377110-0"} property_value: UBPROP:0000001 "The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP][Wikipedia:Aortic_arches#Arch_6]." xsd:string {source="Wikipedia:Aortic_arches#Arch_6"} property_value: UBPROP:0000011 "the distal left sixth arch becomes the ductus arteriosus, the proximal sixth arches bilaterally contribute to the proximal branch pulmonary arteries" xsd:string {source="http://emedicine.medscape.com/article/899609-overview"} [Term] id: UBERON:0003126 name: trachea namespace: uberon def: "The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea] subset: efo_slim subset: major_organ subset: pheno_slim subset: uberon_slim synonym: "cartilaginous trachea" EXACT [] synonym: "tracheal tubule" RELATED [BTO:0001388] synonym: "vertebrate trachea" EXACT SENSU [] synonym: "windpipe" EXACT [] xref: AAO:0010140 xref: BTO:0001388 xref: CALOHA:TS-1060 xref: EFO:0000935 xref: EHDAA2:0002066 xref: EHDAA:3078 xref: EMAPA:16853 xref: EV:0100040 xref: FMA:7394 xref: GAID:361 xref: MA:0000441 xref: MAT:0000137 xref: MESH:D014132 xref: MIAA:0000137 xref: NCIT:C12428 xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA xref: SCTID:181213009 xref: UMLS:C0040578 {source="ncithesaurus:Trachea"} xref: VHOG:0000371 xref: Wikipedia:Vertebrate_trachea xref: XAO:0000118 is_a: UBERON:0000117 ! respiratory tube relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg xsd:anyURI property_value: UBPROP:0000001 "An elongated tube which carries air to and from the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010140", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The respiratory tube between the larynx and the bronchi. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-29, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000371", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In primitive fishes and most tetrapods, the lungs of adults are usually paired. They lie ventral to the digestive tract and are connected to the outside environment through the trachea.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000371", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.409", source="http://bgee.unil.ch/"} property_value: UBPROP:0000007 "tracheal" xsd:string property_value: UBPROP:0000008 "In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx." xsd:string property_value: UBPROP:0000008 "in mouse 15-18 C-rings, 15-20 in human." xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0003127 name: open tracheal system trachea namespace: uberon def: "A respiratory airway that is part of an open tracheal system." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "invertebrate trachea" EXACT [] synonym: "trachea" BROAD SENSU [FBbt:00005043] xref: FBbt:00005043 xref: SPD:0000434 xref: TADS:0000315 xref: Wikipedia:Invertebrate_trachea is_a: UBERON:0001005 ! respiratory airway relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: UBERON:0003261 name: thyroid primordium endoderm namespace: uberon alt_id: UBERON:0005235 def: "An endoderm that is part of a thyroid primordium." [OBOL:automatic] synonym: "endoderm of thyroid primordium" EXACT [OBOL:automatic] xref: EHDAA:956 xref: EMAPA:25357 xref: RETIRED_EHDAA2:0002035 xref: VHOG:0001089 relationship: part_of UBERON:0003091 ! thyroid primordium [Term] id: UBERON:0003279 name: endothelium of trachea namespace: uberon def: "An endothelium that is part of a trachea." [OBOL:automatic] synonym: "endothelium of windpipe" EXACT [OBOL:automatic] synonym: "trachea endothelium" EXACT [OBOL:automatic] synonym: "windpipe endothelium" EXACT [OBOL:automatic] xref: EHDAA:3082 xref: RETIRED_EHDAA2:0002068 is_a: UBERON:0001901 ! epithelium of trachea relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003280 name: endothelium of main bronchus namespace: uberon def: "An endothelium that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis endothelium" EXACT [OBOL:automatic] synonym: "endothelium of bronchus principalis" EXACT [OBOL:automatic] synonym: "endothelium of primary bronchus" EXACT [OBOL:automatic] synonym: "endothelium of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchus endothelium" EXACT [OBOL:automatic] synonym: "primary bronchus endothelium" EXACT [OBOL:automatic] synonym: "principal bronchus endothelium" EXACT [OBOL:automatic] xref: EHDAA:3076 xref: RETIRED_EHDAA2:0001046 is_a: UBERON:0002340 ! epithelium of main bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003295 name: pharyngeal gland namespace: uberon def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [http://www.biology-online.org/dictionary/] subset: organ_slim synonym: "glandulae pharyngeae" RELATED [BTO:0004849] synonym: "pharynx gland" EXACT [EHDAA2:0001461] xref: BTO:0004849 xref: EHDAA2:0001461 xref: EHDAA:2967 xref: FMA:55075 is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0001042 {source="BTO"} ! chordate pharynx [Term] id: UBERON:0003351 name: pharyngeal epithelium namespace: uberon def: "An epithelium that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic] synonym: "epithelium of pharynx" EXACT [OBOL:automatic] synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic] synonym: "pharynx epithelium" EXACT [OBOL:automatic] xref: BSA:0000112 xref: BTO:0005240 xref: EMAPA:16708 xref: MA:0002725 xref: RETIRED_EHDAA2:0001460 xref: TAO:0001174 xref: XAO:0003202 xref: ZFA:0001174 is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx property_value: UBPROP:0000001 "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001174", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0003364 name: epithelium of right lung namespace: uberon def: "An epithelium that is part of a right lung [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of right lung" EXACT [OBOL:automatic] synonym: "right lung epithelial tissue" EXACT [OBOL:automatic] synonym: "right lung epithelium" EXACT [OBOL:automatic] xref: EMAPA:17663 xref: MA:0003132 is_a: UBERON:0000115 ! lung epithelium relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003365 name: epithelium of left lung namespace: uberon def: "An epithelium that is part of a left lung [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of left lung" EXACT [OBOL:automatic] synonym: "left lung epithelial tissue" EXACT [OBOL:automatic] synonym: "left lung epithelium" EXACT [OBOL:automatic] xref: EMAPA:17655 xref: MA:0003131 is_a: UBERON:0000115 ! lung epithelium relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003384 name: skeletal muscle tissue of pharynx namespace: uberon def: "A portion of skeletal muscle tissue that is part of a pharynx [Automatically generated definition]." [OBOL:automatic] synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic] synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic] xref: EMAPA:18963 is_a: UBERON:0004830 ! respiratory system skeletal muscle relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0003387 name: smooth muscle of trachea namespace: uberon alt_id: UBERON:0004244 def: "A portion of smooth muscle tissue that is part of a trachea [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "trachea smooth muscle" EXACT [MA:0001863] synonym: "tracheal smooth muscle" EXACT [BTO:0001391] xref: BTO:0001391 xref: EMAPA:19192 xref: FMA:262010 xref: MA:0001863 xref: NCIT:C49306 xref: UMLS:C1710458 {source="ncithesaurus:Trachea_Smooth_Muscle_Tissue"} is_a: UBERON:0004233 ! lower respiratory tract smooth muscle relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003389 name: mesothelium of diaphragm namespace: uberon def: "A mesothelium that is part of a diaphragm [Automatically generated definition]." [OBOL:automatic] synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic] synonym: "diaphragm mesothelium" EXACT [OBOL:automatic] synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic] synonym: "meso-epithelium of thoracic diaphragm" EXACT [OBOL:automatic] synonym: "mesothelium of thoracic diaphragm" EXACT [OBOL:automatic] synonym: "thoracic diaphragm meso-epithelium" EXACT [OBOL:automatic] synonym: "thoracic diaphragm mesothelium" EXACT [OBOL:automatic] xref: EMAPA:18429 is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0003404 name: lobar bronchus of right lung namespace: uberon def: "A lobar bronchus that is part of a right lung [Automatically generated definition]." [OBOL:automatic] synonym: "right lobar bronchus" EXACT [OBOL:automatic] synonym: "right lung lobar bronchus" EXACT [OBOL:automatic] synonym: "right lung secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus of right lung" EXACT [OBOL:automatic] xref: EMAPA:17664 xref: MA:0003134 xref: SCTID:245511004 is_a: UBERON:0002183 ! lobar bronchus relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006518 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! right lung lobe [Term] id: UBERON:0003405 name: lobar bronchus of left lung namespace: uberon def: "A lobar bronchus that is part of a left lung [Automatically generated definition]." [OBOL:automatic] synonym: "left lobar bronchus" EXACT [OBOL:automatic] synonym: "left lung lobar bronchus" EXACT [OBOL:automatic] synonym: "left lung secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus of left lung" EXACT [OBOL:automatic] xref: EMAPA:17388 xref: EMAPA:17656 xref: MA:0003133 xref: SCTID:245510003 is_a: UBERON:0002183 ! lobar bronchus relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0008951 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! left lung lobe [Term] id: UBERON:0003406 name: cartilage of respiratory system namespace: uberon def: "A cartilage element that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic] synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory system cartilage" EXACT [OBOL:automatic] xref: EMAPA:18694 xref: MA:0001818 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003410 name: oropharyngeal gland namespace: uberon def: "A gland that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] subset: organ_slim synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic] synonym: "gland of oropharynx" EXACT [EMAPA:25095] synonym: "oral part of pharynx gland" EXACT [OBOL:automatic] synonym: "oropharynx gland" EXACT [OBOL:automatic] xref: EMAPA:25095 is_a: UBERON:0003295 ! pharyngeal gland relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0003456 name: respiratory system lymphatic vessel namespace: uberon def: "A lymphatic vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic] synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic] xref: EMAPA:37580 {source="MA:th"} xref: MA:0001824 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003469 name: respiratory system artery namespace: uberon def: "An artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37569 {source="MA:th"} xref: MA:0001804 is_a: UBERON:0003643 ! respiratory system arterial blood vessel relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003489 name: respiratory system capillary endothelium namespace: uberon def: "An endothelium of capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary endothelium" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel endothelium" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of capillary vessel" EXACT [OBOL:automatic] xref: EMAPA:37575 {source="MA:th"} xref: MA:0001808 is_a: UBERON:0004702 ! respiratory system blood vessel endothelium relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003504 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system blood vessel relationship: part_of UBERON:0003526 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system capillary [Term] id: UBERON:0003490 name: respiratory system reticular lamina namespace: uberon def: "A reticular lamina that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius fibroreticular lamina" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "apparatus respiratorius reticular lamina" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of respiratory system" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system fibroreticular lamina" EXACT [OBOL:automatic] synonym: "respiratory system lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "reticular lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "reticular lamina of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37572 {source="MA:th"} xref: MA:0001817 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003492 name: bronchus reticular lamina namespace: uberon def: "A reticular lamina that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchi lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "bronchi reticular lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "bronchial trunk reticular lamina" EXACT [OBOL:automatic] synonym: "bronchus fibroreticular lamina" EXACT [OBOL:automatic] synonym: "bronchus lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchi" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of bronchus" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchi" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchial trunk" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of bronchus" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchi" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic] xref: EMAPA:37811 {source="MA:th"} xref: MA:0001834 is_a: UBERON:0003490 ! respiratory system reticular lamina relationship: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0009652 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! bronchus basement membrane [Term] id: UBERON:0003493 name: trachea reticular lamina namespace: uberon def: "A reticular lamina that is part of a trachea [Automatically generated definition]." [OBOL:automatic] synonym: "fibroreticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "fibroreticular lamina of windpipe" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "lamina fibroreticularis of windpipe" EXACT [OBOL:automatic] synonym: "reticular lamina of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "reticular lamina of windpipe" EXACT [OBOL:automatic] synonym: "windpipe fibroreticular lamina" EXACT [OBOL:automatic] synonym: "windpipe lamina fibroreticularis" EXACT [OBOL:automatic] synonym: "windpipe reticular lamina" EXACT [OBOL:automatic] xref: EMAPA:37554 {source="MA:th"} xref: MA:0001856 is_a: UBERON:0003490 ! respiratory system reticular lamina relationship: part_of UBERON:0003126 ! trachea relationship: part_of UBERON:0009653 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! trachea basement membrane [Term] id: UBERON:0003494 name: respiratory system venule namespace: uberon def: "A venule that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic] synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venule of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37587 {source="MA:th"} xref: MA:0001813 is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003495 name: respiratory system arteriole namespace: uberon def: "An arteriole that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37568 {source="MA:th"} xref: MA:0001803 is_a: UBERON:0003643 ! respiratory system arterial blood vessel relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003469 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system artery [Term] id: UBERON:0003504 name: respiratory system blood vessel namespace: uberon def: "A blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:35731 xref: EMAPA:35995 xref: MA:0001799 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003505 name: trachea blood vessel namespace: uberon alt_id: UBERON:0003525 def: "A blood vessel that is part of a trachea." [OBOL:automatic] synonym: "blood vessel of trachea" EXACT [OBOL:automatic] xref: EMAPA:35874 xref: MA:0001852 is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003512 name: lung blood vessel namespace: uberon def: "A blood vessel that is part of a lung [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of lung" EXACT [OBOL:automatic] synonym: "pulmonary vascular element" RELATED [EMAPA:32867] xref: EMAPA:32867 xref: MA:0002457 is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0003518 name: main bronchus blood vessel namespace: uberon def: "A blood vessel that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic] synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic] synonym: "blood vessel of principal bronchus" EXACT [OBOL:automatic] synonym: "bronchus principalis blood vessel" EXACT [OBOL:automatic] synonym: "primary bronchus blood vessel" EXACT [OBOL:automatic] synonym: "primary bronchus vascular element" RELATED [EMAPA:16852] synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic] synonym: "principal bronchus vascular element" RELATED [EMAPA:16852] xref: EMAPA:16852 xref: MA:0001844 is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003526 name: respiratory system capillary namespace: uberon def: "A capillary that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic] synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic] synonym: "blood capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "blood capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary of respiratory system" EXACT [OBOL:automatic] synonym: "capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "capillary vessel of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system blood capillary" EXACT [OBOL:automatic] synonym: "respiratory system capillary vessel" EXACT [OBOL:automatic] xref: EMAPA:37574 {source="MA:th"} xref: MA:0001807 is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003529 name: respiratory system lymphatic vessel endothelium namespace: uberon def: "An lymphatic vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of lymph vessel of respiratory system" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymph vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lymphatic vessel endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of lymph vessel" EXACT [OBOL:automatic] synonym: "respiratory system lymph vessel endothelium" EXACT [OBOL:automatic] synonym: "respiratory system lymphatic vessel endothelium" EXACT [OBOL:automatic] xref: EMAPA:37581 {source="MA:th"} xref: MA:0001825 is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel [Term] id: UBERON:0003536 name: right lung alveolar duct namespace: uberon def: "An alveolar duct that is part of a right lung [Automatically generated definition]." [OBOL:automatic] synonym: "alveolar duct of right lung" EXACT [OBOL:automatic] xref: EMAPA:35819 xref: MA:0001785 xref: NCIT:C49277 xref: UMLS:C1709958 {source="ncithesaurus:Right_Lung_Alveolar_Duct"} is_a: UBERON:0002173 ! pulmonary alveolar duct relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006526 ! right lung alveolar system [Term] id: UBERON:0003537 name: left lung alveolar duct namespace: uberon def: "An alveolar duct that is part of a left lung [Automatically generated definition]." [OBOL:automatic] comment: Mice have 1 left lobe synonym: "alveolar duct of left lung" EXACT [OBOL:automatic] xref: EMAPA:19183 xref: MA:0001776 xref: NCIT:C49250 xref: UMLS:C1708672 {source="ncithesaurus:Left_Lung_Alveolar_Duct"} is_a: UBERON:0002173 ! pulmonary alveolar duct relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006525 ! left lung alveolar system [Term] id: UBERON:0003538 name: right lung bronchiole namespace: uberon def: "A bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiole of right lung" EXACT [OBOL:automatic] synonym: "lobular bronchiole of right lung" EXACT [OBOL:automatic] synonym: "right lung lobular bronchiole" EXACT [OBOL:automatic] xref: EMAPA:35425 xref: MA:0001787 xref: NCIT:C49279 xref: SCTID:200089000 xref: UMLS:C0225670 {source="ncithesaurus:Right_Lung_Bronchiole"} is_a: UBERON:0002186 ! bronchiole relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003539 name: left lung bronchiole namespace: uberon def: "A bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiole of left lung" EXACT [OBOL:automatic] synonym: "left lung lobular bronchiole" EXACT [OBOL:automatic] synonym: "lobular bronchiole of left lung" EXACT [OBOL:automatic] xref: EMAPA:19000 xref: MA:0001778 xref: NCIT:C49252 xref: SCTID:200484003 xref: UMLS:C0225674 {source="ncithesaurus:Left_Lung_Bronchiole"} is_a: UBERON:0002186 ! bronchiole relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003540 name: right lung terminal bronchiole namespace: uberon def: "A terminal bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiolus terminalis of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of right lung" EXACT [OBOL:automatic] xref: EMAPA:36638 xref: MA:0001789 xref: NCIT:C49294 xref: UMLS:C1709961 {source="ncithesaurus:Right_Lung_Terminal_Bronchiole"} is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003538 ! right lung bronchiole relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003541 name: left lung terminal bronchiole namespace: uberon def: "A terminal bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiolus terminalis of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "terminal bronchiole of left lung" EXACT [OBOL:automatic] xref: EMAPA:36636 xref: MA:0001780 xref: NCIT:C49255 xref: UMLS:C1708675 {source="ncithesaurus:Left_Lung_Terminal_Bronchiole"} is_a: UBERON:0002187 ! terminal bronchiole is_a: UBERON:0003539 ! left lung bronchiole relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003542 name: right lung respiratory bronchiole namespace: uberon def: "A respiratory bronchiole that is part of a right lung [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiolus respiratorius of right lung" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of right lung" EXACT [OBOL:automatic] synonym: "right lung bronchiolus respiratorius" EXACT [OBOL:automatic] xref: EMAPA:36637 xref: MA:0001788 xref: NCIT:C49285 xref: UMLS:C1709960 {source="ncithesaurus:Right_Lung_Respiratory_Bronchiole"} is_a: UBERON:0002188 ! respiratory bronchiole is_a: UBERON:0003538 ! right lung bronchiole relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003543 name: left lung respiratory bronchiole namespace: uberon def: "A respiratory bronchiole that is part of a left lung [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiolus respiratorius of left lung" EXACT [OBOL:automatic] synonym: "left lung bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "respiratory bronchiole of left lung" EXACT [OBOL:automatic] xref: EMAPA:36635 xref: MA:0001779 xref: NCIT:C49254 xref: UMLS:C1708674 {source="ncithesaurus:Left_Lung_Respiratory_Bronchiole"} is_a: UBERON:0002188 ! respiratory bronchiole is_a: UBERON:0003539 ! left lung bronchiole relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003570 name: respiratory system connective tissue namespace: uberon def: "A portion of connective tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "portion of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "portion of connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system portion of connective tissue" EXACT [OBOL:automatic] synonym: "respiratory system textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "textus connectivus of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:35968 xref: EMAPA:35977 xref: MA:0001814 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003571 name: trachea connective tissue namespace: uberon def: "A portion of connective tissue that is part of a trachea." [OBOL:automatic] synonym: "connective tissue of trachea" EXACT [OBOL:automatic] synonym: "connective tissue of windpipe" EXACT [OBOL:automatic] xref: EMAPA:35876 xref: MA:0001853 is_a: UBERON:0003580 ! lower respiratory tract connective tissue relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003580 name: lower respiratory tract connective tissue namespace: uberon def: "A portion of connective tissue that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic] synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:37548 {source="MA:th"} xref: MA:0002409 is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0003582 name: nasopharynx connective tissue namespace: uberon def: "A portion of connective tissue that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx connective tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "nasal part of pharynx textus connectivus" EXACT [OBOL:automatic] synonym: "nasopharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "nasopharynx textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "portion of connective tissue of nasopharynx" EXACT [OBOL:automatic] synonym: "portion of connective tissue of rhinopharynx" EXACT [OBOL:automatic] synonym: "rhinopharynx connective tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "rhinopharynx textus connectivus" EXACT [OBOL:automatic] synonym: "textus connectivus of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "textus connectivus of nasopharynx" EXACT [OBOL:automatic] synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic] xref: EMAPA:37682 {source="MA:th"} xref: MA:0001864 is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0003583 name: larynx connective tissue namespace: uberon def: "A portion of connective tissue that is part of a larynx [Automatically generated definition]." [OBOL:automatic] synonym: "connective tissue of larynx" EXACT [OBOL:automatic] synonym: "laryngeal connective tissue" RELATED [EMAPA:35471] synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic] synonym: "larynx textus connectivus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of larynx" EXACT [OBOL:automatic] synonym: "textus connectivus of larynx" EXACT [OBOL:automatic] xref: EMAPA:35471 xref: MA:0001754 xref: NCIT:C49245 xref: UMLS:C1708651 {source="ncithesaurus:Laryngeal_Connective_Tissue"} is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0003590 name: main bronchus connective tissue namespace: uberon def: "A portion of connective tissue that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "connective tissue of main bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of principal bronchus" EXACT [OBOL:automatic] synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] xref: EMAPA:37550 {source="MA:th"} xref: MA:0001845 is_a: UBERON:0003592 ! bronchus connective tissue relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003591 name: lobar bronchus connective tissue namespace: uberon def: "A portion of connective tissue that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "connective tissue of lobar bronchus" EXACT [OBOL:automatic] synonym: "connective tissue of secondary bronchus" EXACT [OBOL:automatic] xref: EMAPA:37647 {source="MA:th"} xref: MA:0001841 is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003592 ! bronchus connective tissue relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0003592 name: bronchus connective tissue namespace: uberon def: "A portion of connective tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi connective tissue" EXACT [OBOL:automatic] synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus" EXACT [OBOL:automatic] synonym: "bronchial connective tissue" RELATED [EMAPA:35193] synonym: "bronchial mesenchyme" RELATED [EMAPA:32690] synonym: "bronchial trunk connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk textus connectivus" EXACT [OBOL:automatic] synonym: "bronchus portion of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus textus connectivus" EXACT [OBOL:automatic] synonym: "connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "portion of connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchi" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchial trunk" EXACT [OBOL:automatic] synonym: "textus connectivus of bronchus" EXACT [OBOL:automatic] xref: EMAPA:32690 xref: EMAPA:35193 xref: MA:0001831 xref: NCIT:C49210 xref: UMLS:C1707052 {source="ncithesaurus:Bronchus_Connective_Tissue"} is_a: UBERON:0003580 ! lower respiratory tract connective tissue relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0003603 name: lower respiratory tract cartilage namespace: uberon def: "A cartilage that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:37547 {source="MA:th"} xref: MA:0001819 xref: NCIT:C49256 xref: UMLS:C1708759 {source="ncithesaurus:Lower_Respiratory_Tract_Cartilage"} is_a: UBERON:0003406 ! cartilage of respiratory system relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0003604 name: trachea cartilage namespace: uberon def: "the ring-shaped cartilaginous structures that support the trachea" [http://orcid.org/0000-0002-6601-2165, J:97123, MGI:smb, MP:0003120] subset: pheno_slim synonym: "cartilage of the trachea" RELATED [Wikipedia:Tracheal_rings] synonym: "cartilage of trachea" EXACT [OBOL:automatic] synonym: "cartilage of windpipe" EXACT [OBOL:automatic] synonym: "cartilagines tracheales" RELATED LATIN [Wikipedia:Tracheal_rings] synonym: "cartilaginous ring of trachea" EXACT [EMAPA:18699] synonym: "cartilaginous trachea cartilage" EXACT [OBOL:automatic] synonym: "cartilago trachealis" EXACT [FMA:7434] synonym: "ring of the trachea" RELATED [Wikipedia:Tracheal_rings] synonym: "trachea ring" RELATED [] synonym: "tracheal cartilage" EXACT [FMA:7434] synonym: "tracheal ring" RELATED [Wikipedia:Tracheal_rings] synonym: "windpipe cartilage" EXACT [OBOL:automatic] xref: EMAPA:18699 xref: EMAPA:35875 xref: FMA:7434 xref: MA:0001857 xref: NCIT:C49304 xref: SCTID:278979006 xref: UMLS:C1710456 {source="ncithesaurus:Trachea_Cartilage"} xref: Wikipedia:Tracheal_rings is_a: UBERON:0003603 ! lower respiratory tract cartilage relationship: part_of UBERON:0003126 ! trachea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png xsd:anyURI property_value: IAO:0000116 "check whether to classify as part of splanchoncranium" xsd:string property_value: UBPROP:0000008 "in mammals the rings are incomplete, in avians the rings are complete." xsd:string [Term] id: UBERON:0003611 name: respiratory system elastic tissue namespace: uberon def: "An elastic tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius elastic connective tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius elastic tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "elastic connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "elastic tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "elastic tissue of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system elastic connective tissue" EXACT [OBOL:automatic] synonym: "respiratory system textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37579 {source="MA:th"} xref: MA:0001820 is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0004777 ! respiratory system submucosa [Term] id: UBERON:0003615 name: lung elastic tissue namespace: uberon def: "Elastic tissue that is part of a lung [Automatically generated definition]." [OBOL:automatic] synonym: "elastic connective tissue of lung" EXACT [OBOL:automatic] synonym: "elastic tissue of lung" EXACT [OBOL:automatic] synonym: "lung elastic connective tissue" EXACT [OBOL:automatic] synonym: "lung textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "pulmonary elastic fiber" NARROW [http://orcid.org/0000-0002-6601-2165] synonym: "textus connectivus elasticus of lung" EXACT [OBOL:automatic] xref: MA:0002860 is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0003616 name: bronchus elastic tissue namespace: uberon def: "An elastic tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchi elastic tissue" EXACT [OBOL:automatic] synonym: "bronchi textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "bronchial trunk elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk elastic tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "bronchus elastic connective tissue" EXACT [OBOL:automatic] synonym: "bronchus textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "elastic connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchi" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "elastic tissue of bronchus" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchi" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchial trunk" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of bronchus" EXACT [OBOL:automatic] xref: MA:0001838 xref: NCIT:C49211 xref: UMLS:C1707053 {source="ncithesaurus:Bronchus_Elastic_Tissue"} is_a: UBERON:0003592 ! bronchus connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue relationship: part_of UBERON:0001957 ! submucosa of bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0003617 name: trachea elastic tissue namespace: uberon def: "An elastic tissue that is part of a trachea [Automatically generated definition]." [OBOL:automatic] synonym: "cartilaginous trachea elastic connective tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea elastic tissue" EXACT [OBOL:automatic] synonym: "cartilaginous trachea textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "elastic connective tissue of vertebrate trachea" EXACT [OBOL:automatic] synonym: "elastic connective tissue of windpipe" EXACT [OBOL:automatic] synonym: "elastic tissue of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "elastic tissue of vertebrate trachea" EXACT [OBOL:automatic] synonym: "elastic tissue of windpipe" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of vertebrate trachea" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of windpipe" EXACT [OBOL:automatic] synonym: "vertebrate trachea elastic connective tissue" EXACT [OBOL:automatic] synonym: "vertebrate trachea elastic tissue" EXACT [OBOL:automatic] synonym: "vertebrate trachea textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "windpipe elastic connective tissue" EXACT [OBOL:automatic] synonym: "windpipe elastic tissue" EXACT [OBOL:automatic] synonym: "windpipe textus connectivus elasticus" EXACT [OBOL:automatic] xref: MA:0001861 is_a: UBERON:0003571 ! trachea connective tissue is_a: UBERON:0003611 ! respiratory system elastic tissue relationship: part_of UBERON:0002202 ! submucosa of trachea relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0003643 name: respiratory system arterial blood vessel namespace: uberon def: "An arterial blood vessel that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:37565 {source="MA:th"} xref: MA:0001800 is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003706 name: laryngeal vocal fold namespace: uberon def: "Either of two pairs of folds of mucous membrane projecting into the larynx." [http://medical-dictionary.thefreedictionary.com/] subset: pheno_slim synonym: "plica vocalis" RELATED [BTO:0005084] synonym: "true vocal cord" EXACT [FMA:55457] synonym: "vocal band" RELATED [BTO:0005084] synonym: "vocal chord" RELATED [BTO:0005084] synonym: "vocal cord" EXACT [FMA:55457] synonym: "vocal fold" RELATED [MESH:A04.329.364.737] xref: BTO:0005084 xref: EMAPA:19181 xref: FMA:55457 xref: GAID:344 xref: MESH:D014827 xref: NCIT:C12822 xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA xref: SCTID:245504003 xref: UMLS:C0042930 {source="ncithesaurus:Vocal_Cord"} relationship: part_of UBERON:0002486 {source="BTO", source="FMA-abduced"} ! glottis property_value: IAO:0000116 "we follow FMA in modeling this is mucous membrane plus ligament" xsd:string [Term] id: UBERON:0003831 name: respiratory system muscle namespace: uberon def: "Any muscle organ that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system muscle organ" EXACT [OBOL:automatic] xref: EMAPA:35733 xref: MA:0001828 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003948 name: blood-air barrier namespace: uberon def: "The membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm" [MP:0002324] subset: pheno_slim xref: MESH:D015824 relationship: part_of UBERON:0002048 ! lung property_value: IAO:0000116 "TODO - alveolar lumen" xsd:string [Term] id: UBERON:0003949 name: tubal tonsil namespace: uberon def: "The lymph tissue associated with the pharyngeal opening of the auditory tube" [MP:0002386] subset: pheno_slim synonym: "auditory tube lymph gland" EXACT [FMA:54975] synonym: "eustachian amygdala" EXACT [FMA:54975] synonym: "Gerlach's tonsil" EXACT [FMA:54975] synonym: "Gerlach's tubal tonsil" EXACT [FMA:54975] xref: FMA:54975 xref: SCTID:143319002 xref: Wikipedia:Tubal_tonsil is_a: UBERON:0002372 ! tonsil [Term] id: UBERON:0004110 name: midnasal cavity namespace: uberon def: "An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]." [HP:0010641] subset: pheno_slim xref: FMA:59675 relationship: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0004225 name: respiratory system smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "airway smooth muscle" RELATED [BTO:0001660] synonym: "airway smooth muscle cell" RELATED [BTO:0001660] synonym: "respiratory smooth muscle" EXACT [BTO:0001660] synonym: "smooth muscle of respiratory system" EXACT [OBOL:automatic] xref: BTO:0001660 xref: EMAPA:35734 xref: MA:0001830 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004233 name: lower respiratory tract smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] synonym: "involuntary muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract involuntary muscle" EXACT [OBOL:automatic] synonym: "lower respiratory tract non-striated muscle" EXACT [OBOL:automatic] synonym: "lower respiratory tract smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:35520 xref: MA:0002410 is_a: UBERON:0004225 ! respiratory system smooth muscle relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0004241 name: main bronchus smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis smooth muscle" EXACT [OBOL:automatic] synonym: "bronchus principalis smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchus principalis" EXACT [OBOL:automatic] synonym: "involuntary muscle of main bronchus" EXACT [OBOL:automatic] synonym: "involuntary muscle of primary bronchus" EXACT [OBOL:automatic] synonym: "involuntary muscle of principal bronchus" EXACT [OBOL:automatic] synonym: "main bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "main bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "main bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchus principalis" EXACT [OBOL:automatic] synonym: "non-striated muscle of main bronchus" EXACT [OBOL:automatic] synonym: "non-striated muscle of primary bronchus" EXACT [OBOL:automatic] synonym: "non-striated muscle of principal bronchus" EXACT [OBOL:automatic] synonym: "primary bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "primary bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "primary bronchus smooth muscle" EXACT [OBOL:automatic] synonym: "primary bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "principal bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "principal bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "principal bronchus smooth muscle" EXACT [OBOL:automatic] synonym: "principal bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchus principalis" EXACT [OBOL:automatic] synonym: "smooth muscle of main bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle of primary bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle of principal bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchus principalis" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of main bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of primary bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of principal bronchus" EXACT [OBOL:automatic] xref: EMAPA:37551 {source="MA:th"} xref: MA:0001848 is_a: UBERON:0004242 ! bronchus smooth muscle relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0004242 name: bronchus smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchi involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchi non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchi smooth muscle" EXACT [OBOL:automatic] synonym: "bronchi smooth muscle tissue" EXACT [OBOL:automatic] synonym: "bronchial smooth muscle" RELATED [EMAPA:35195] synonym: "bronchial trunk involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchial trunk non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchial trunk smooth muscle" EXACT [OBOL:automatic] synonym: "bronchial trunk smooth muscle tissue" EXACT [OBOL:automatic] synonym: "bronchus involuntary muscle" EXACT [OBOL:automatic] synonym: "bronchus non-striated muscle" EXACT [OBOL:automatic] synonym: "bronchus smooth muscle tissue" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchi" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchial trunk" EXACT [OBOL:automatic] synonym: "involuntary muscle of bronchus" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchi" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchial trunk" EXACT [OBOL:automatic] synonym: "non-striated muscle of bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchi" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchial trunk" EXACT [OBOL:automatic] synonym: "smooth muscle of bronchus" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchi" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of bronchus" EXACT [OBOL:automatic] xref: BTO:0004401 xref: EMAPA:35195 xref: MA:0001840 xref: NCIT:C49213 xref: UMLS:C1707055 {source="ncithesaurus:Bronchus_Smooth_Muscle_Tissue"} is_a: UBERON:0004233 ! lower respiratory tract smooth muscle relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0004296 name: respiratory system lymphatic vessel smooth muscle namespace: uberon def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37582 {source="MA:th"} xref: MA:0001826 is_a: UBERON:0004225 ! respiratory system smooth muscle relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel [Term] id: UBERON:0004297 name: respiratory system blood vessel smooth muscle namespace: uberon def: "A blood vessel smooth muscle that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37573 {source="MA:th"} xref: MA:0001806 is_a: UBERON:0004225 ! respiratory system smooth muscle relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004363 name: pharyngeal arch artery namespace: uberon alt_id: UBERON:0004342 def: "One of a series of paired embryological vascular structures formed within a pharyngeal arch; in the adult, some of these vessels give rise to the great vessels[MP]" [MP:0002672] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "a. arcuum pharyngeorum" RELATED LATIN [Wikipedia:Aortic_arches] synonym: "aortic arch" EXACT [ZFA:0005004] synonym: "aortic arch artery" RELATED [EMAPA:16684] synonym: "aortic arches" EXACT PLURAL [ZFA:0005004] synonym: "arteriae arcuum pharyngeorum" RELATED LATIN [Wikipedia:Aortic_arches] synonym: "branchial aortic arches" EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] synonym: "branchial aortic arches" RELATED PLURAL [ZFA:0005004, ZFIN:ZDB-PUB-080512-6] synonym: "branchial arch artery" EXACT [EMAPA:16684] synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672] synonym: "PAA" EXACT ABBREVIATION [MP:0002672] synonym: "pharyngeal arch arteries" RELATED PLURAL [] synonym: "pharyngeal arch artery" EXACT [MP:0002672] synonym: "pharyngeal arch artery" RELATED [VHOG:0000122] xref: AAO:0010414 xref: EFO:0003695 xref: EHDAA2:0000186 xref: EHDAA:398 xref: EHDAA:7327 xref: EMAPA:16684 xref: NCIT:C32123 xref: TAO:0005004 xref: UMLS:C0003489 {source="ncithesaurus:Aortic_Arch"} xref: VHOG:0000122 xref: Wikipedia:Aortic_arches xref: XAO:0000341 xref: ZFA:0005004 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0007303 {source="ZFA"} ! pharyngeal vasculature property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png xsd:anyURI property_value: IAO:0000116 "add specific artery derivatives" xsd:string property_value: IAO:0000232 "Do not confuse with arch of aorta." xsd:string property_value: UBPROP:0000001 "Paired vessels arching from the ventral to the dorsal aorta through the pharyngeal arches. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000122", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aortic+arches"} property_value: UBPROP:0000003 "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000122", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620", source="http://bgee.unil.ch/"} property_value: UBPROP:0000008 "Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods" xsd:string property_value: UBPROP:0000011 "The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches" xsd:string [Term] id: UBERON:0004368 name: Reichert's cartilage namespace: uberon def: "A continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure" [DOI:10.1111/j.1469-7580.2006.00524.x, MP:0004916] subset: pheno_slim synonym: "hyaloid cartilage" EXACT [MP:0004916] synonym: "hyoid cartilage" EXACT [EHDAA2:0000793] synonym: "Reichert cartilage" EXACT [] synonym: "second branchial arch cartilage" EXACT [] synonym: "second pharyngeal arch cartilage" EXACT [MP:0004916] xref: EHDAA2:0000793 xref: EMAPA:17622 xref: FMA:295800 is_a: UBERON:0003406 ! cartilage of respiratory system relationship: part_of UBERON:0001557 {source="EHDAA2"} ! upper respiratory tract property_value: UBPROP:0000011 "Classically defined as: a structure... develop the stapes, the styloid processes, the stylohyoid ligaments, and the lesser cornua of the hyoid bone; its proximal end gives rise to the stylohyoid ligament. Relationship to stapes disputed." xsd:string property_value: UBPROP:0000012 "in EHDAA2 this also develops from 3rd arch Mes from NC" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0004478 name: musculature of larynx namespace: uberon def: "The collection of muscles that are part of the larynx." [http://orcid.org/0000-0002-6601-2165] synonym: "laryngeal muscles" EXACT [FMA:46616] synonym: "laryngeal muscles set" EXACT [FMA:46616] synonym: "muscle group of larynx" EXACT [FMA:46616] synonym: "set of laryngeal muscles" EXACT [FMA:46616] synonym: "set of muscles of larynx" EXACT [FMA:264611] xref: FMA:264611 xref: FMA:46616 xref: MESH:D007821 xref: Wikipedia:Muscles_of_larynx relationship: part_of UBERON:0001737 ! larynx property_value: IAO:0000116 "currently defined by location rather than attachment" xsd:string [Term] id: UBERON:0004495 name: skeletal muscle tissue of diaphragm namespace: uberon def: "A portion of skeletal muscle tissue that is part of a diaphragm [Automatically generated definition]." [OBOL:automatic] xref: FMA:261898 is_a: UBERON:0004830 ! respiratory system skeletal muscle relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0004515 name: smooth muscle tissue of bronchiole namespace: uberon def: "A portion of smooth muscle tissue that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] synonym: "smooth muscle tissue of lobular bronchiole" EXACT [FMA:261081] xref: FMA:261045 xref: FMA:261081 is_a: UBERON:0004242 ! bronchus smooth muscle relationship: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0004516 name: smooth muscle tissue of terminal bronchiole namespace: uberon def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Automatically generated definition]." [OBOL:automatic] xref: FMA:261051 is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole relationship: part_of UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0004517 name: smooth muscle tissue of respiratory bronchiole namespace: uberon def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] xref: FMA:261055 is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole relationship: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0004702 name: respiratory system blood vessel endothelium namespace: uberon def: "A blood vessel endothelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:35732 xref: MA:0001805 is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004777 name: respiratory system submucosa namespace: uberon def: "A submucosa that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius submucosa" EXACT [OBOL:automatic] synonym: "submucosa of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "submucosa of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37578 {source="MA:th"} xref: MA:0001822 relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003570 ! respiratory system connective tissue [Term] id: UBERON:0004778 name: larynx submucosa namespace: uberon def: "A submucosa that is part of a larynx [Automatically generated definition]." [OBOL:automatic] synonym: "laryngeal submucosa" RELATED [EMAPA:35474] synonym: "submucosa of larynx" EXACT [OBOL:automatic] xref: EMAPA:35474 xref: FMA:321584 xref: MA:0002728 xref: SCTID:361941005 is_a: UBERON:0004777 ! respiratory system submucosa relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0004779 name: respiratory system lamina propria namespace: uberon def: "A lamina propria that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius lamina propria" EXACT [OBOL:automatic] synonym: "apparatus respiratorius lamina propria mucosa" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lamina propria mucosa of respiratory system" EXACT [OBOL:automatic] synonym: "lamina propria of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "lamina propria of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system lamina propria mucosa" EXACT [OBOL:automatic] xref: EMAPA:37576 {source="MA:th"} xref: MA:0001821 relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0004785 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system mucosa [Term] id: UBERON:0004785 name: respiratory system mucosa namespace: uberon def: "the mucous membrane lining the respiratory tract" [MESH:A04.760, MGI:cwg, MP:0002277] subset: pheno_slim synonym: "apparatus respiratorius mucosa" EXACT [OBOL:automatic] synonym: "apparatus respiratorius mucosa of organ" EXACT [OBOL:automatic] synonym: "apparatus respiratorius mucous membrane" EXACT [OBOL:automatic] synonym: "laryngeal mucous membrane" RELATED [EMAPA:18334] synonym: "mucosa of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of respiratory system" EXACT [OBOL:automatic] synonym: "mucosa of respiratory system" EXACT [OBOL:automatic] synonym: "mucous membrane of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "mucous membrane of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory mucosa" RELATED [BTO:0000973] synonym: "respiratory system mucosa of organ" EXACT [OBOL:automatic] synonym: "respiratory system mucous membrane" EXACT [OBOL:automatic] synonym: "respiratory tract mucosa" RELATED [] xref: BTO:0000973 xref: EMAPA:18334 xref: EMAPA:37577 {source="MA:th"} xref: FMA:302092 xref: GAID:304 xref: MA:0001827 xref: MESH:D020545 relationship: part_of UBERON:0001004 ! respiratory system property_value: IAO:0000116 "TODO - split respiratory tract mucosa from respiratory system mucosa" xsd:string [Term] id: UBERON:0004789 name: larynx mucous gland namespace: uberon def: "A mucous gland that is part of a larynx [Automatically generated definition]." [OBOL:automatic] synonym: "mucous gland of larynx" EXACT [OBOL:automatic] xref: EMAPA:37631 {source="MA:th"} xref: MA:0001767 is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001824 ! mucosa of larynx [Term] id: UBERON:0004798 name: respiratory system basal lamina namespace: uberon def: "A basal lamina that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius basal lamina" EXACT [OBOL:automatic] synonym: "apparatus respiratorius basal lamina of connective tissue" EXACT [OBOL:automatic] synonym: "basal lamina of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of respiratory system" EXACT [OBOL:automatic] synonym: "basal lamina of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system basal lamina of connective tissue" EXACT [OBOL:automatic] xref: EMAPA:37571 {source="MA:th"} xref: MA:0001816 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004799 name: trachea basal lamina namespace: uberon def: "A basal lamina that is part of a respiratory airway [Automatically generated definition]." [OBOL:automatic] synonym: "basal lamina of connective tissue of respiratory airway" EXACT [OBOL:automatic] xref: EMAPA:37553 {source="MA:th"} xref: MA:0001855 xref: NCIT:C49303 xref: UMLS:C1710454 {source="ncithesaurus:Trachea_Basal_Lamina"} is_a: UBERON:0004798 ! respiratory system basal lamina relationship: part_of UBERON:0001005 ! respiratory airway [Term] id: UBERON:0004800 name: bronchus basal lamina namespace: uberon def: "A basal lamina that is part of a bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "basal lamina of bronchi" EXACT [OBOL:automatic] synonym: "basal lamina of bronchial trunk" EXACT [OBOL:automatic] synonym: "basal lamina of bronchus" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of bronchi" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of bronchial trunk" EXACT [OBOL:automatic] synonym: "basal lamina of connective tissue of bronchus" EXACT [OBOL:automatic] synonym: "bronchi basal lamina" EXACT [OBOL:automatic] synonym: "bronchi basal lamina of connective tissue" EXACT [OBOL:automatic] synonym: "bronchial trunk basal lamina" EXACT [OBOL:automatic] synonym: "bronchial trunk basal lamina of connective tissue" EXACT [OBOL:automatic] synonym: "bronchus basal lamina of connective tissue" EXACT [OBOL:automatic] xref: EMAPA:37810 {source="MA:th"} xref: MA:0001833 xref: NCIT:C49207 xref: UMLS:C1707050 {source="ncithesaurus:Bronchus_Basal_Lamina"} is_a: UBERON:0004799 ! trachea basal lamina relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0004802 name: respiratory tract epithelium namespace: uberon def: "the pseudostratified ciliated epithelium that lines much of the conducting portion of the airway, including part of the nasal cavity and larynx, the trachea, and bronchi" [ISBN:0-683-40008-8, MGI:anna, MP:0010942] subset: pheno_slim synonym: "airway epithelium" RELATED [BTO:0000419] synonym: "epithelial tissue of respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of respiratory tract" EXACT [OBOL:automatic] synonym: "respiratory epithelium" RELATED [BTO:0000419] synonym: "respiratory tract epithelial tissue" EXACT [OBOL:automatic] xref: BTO:0000419 xref: CALOHA:TS-0023 xref: EMAPA:32827 xref: MA:0001480 xref: SCTID:321764001 xref: VHOG:0000981 is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0000065 ! respiratory tract relationship: part_of UBERON:0000072 ! proximo-distal subdivision of respiratory tract [Term] id: UBERON:0004807 name: respiratory system epithelium namespace: uberon def: "An epithelium that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "apparatus respiratorius epithelial tissue" EXACT [OBOL:automatic] synonym: "apparatus respiratorius epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "epithelial tissue of respiratory system" EXACT [OBOL:automatic] synonym: "epithelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "epithelium of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system epithelial tissue" EXACT [OBOL:automatic] xref: CALOHA:TS-0023 xref: EMAPA:32826 xref: MA:0001823 xref: VHOG:0000981 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004814 name: upper respiratory tract epithelium namespace: uberon def: "An epithelium that is part of a upper respiratory tract [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of upper respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of upper respiratory tract" EXACT [OBOL:automatic] synonym: "upper respiratory tract epithelial tissue" EXACT [OBOL:automatic] xref: EMAPA:35894 xref: MA:0001912 is_a: UBERON:0004802 ! respiratory tract epithelium relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0004815 name: lower respiratory tract epithelium namespace: uberon def: "An epithelium that is part of a lower respiratory tract [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic] synonym: "epithelium of lower respiratory tract" EXACT [OBOL:automatic] synonym: "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic] xref: EMAPA:37549 {source="MA:th"} xref: MA:0001481 is_a: UBERON:0004802 ! respiratory tract epithelium relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0004816 name: larynx epithelium namespace: uberon def: "An epithelium that is part of a larynx [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "epithelial tissue of larynx" EXACT [OBOL:automatic] synonym: "epithelium of larynx" EXACT [OBOL:automatic] synonym: "laryngeal epithelium" EXACT [OBOL:automatic] synonym: "larynx epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0004065 xref: EMAPA:35472 xref: MA:0001765 xref: NCIT:C49247 xref: UMLS:C0751258 {source="ncithesaurus:Laryngeal_Epithelium"} is_a: UBERON:0004802 ! respiratory tract epithelium relationship: part_of UBERON:0001737 ! larynx property_value: UBPROP:0000010 "composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx [ISBN:0-397-51047-0]" xsd:string [Term] id: UBERON:0004818 name: terminal bronchus epithelium namespace: uberon def: "An epithelium that is part of a terminal bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of terminal bronchus" EXACT [OBOL:automatic] synonym: "epithelium of terminal bronchus" EXACT [OBOL:automatic] synonym: "terminal bronchus epithelial tissue" EXACT [OBOL:automatic] xref: EMAPA:37764 {source="MA:th"} xref: MA:0001851 is_a: UBERON:0002031 ! epithelium of bronchus relationship: part_of UBERON:0002041 ! terminal bronchus [Term] id: UBERON:0004821 name: pulmonary alveolus epithelium namespace: uberon def: "The epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898] subset: pheno_slim synonym: "alveolar epithelium" RELATED [EMAPA:35121] synonym: "alveolus epithelial tissue" EXACT [OBOL:automatic] synonym: "alveolus epithelium" EXACT [MA:0001771] synonym: "epithelial tissue of alveolus" EXACT [OBOL:automatic] synonym: "epithelium of alveolus" EXACT [OBOL:automatic] synonym: "epithelium of pulmonary alveolus" EXACT [FMA:63915] synonym: "pulmonary alveolar epithelium" EXACT [FMA:63915] synonym: "pulmonary alveolus epithelium" EXACT [MP:0010898] xref: BTO:0003511 xref: EMAPA:35121 xref: FMA:63915 xref: MA:0001771 xref: NCIT:C12867 is_a: UBERON:0000115 ! lung epithelium relationship: part_of UBERON:0002299 ! alveolus of lung relationship: part_of UBERON:0004894 {source="FMA"} ! alveolar wall [Term] id: UBERON:0004830 name: respiratory system skeletal muscle namespace: uberon def: "A portion of skeletal muscle tissue that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "respiratory system skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "skeletal muscle of respiratory system" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37583 {source="MA:th"} xref: MA:0001829 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004848 name: respiratory system arterial endothelium namespace: uberon def: "An endothelium of artery that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius arterial endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius artery endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius endothelium of artery" EXACT [OBOL:automatic] synonym: "arterial endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "arterial endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "artery endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "artery endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "endothelium of artery of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of artery of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system artery endothelium" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of artery" EXACT [OBOL:automatic] xref: EMAPA:37566 {source="MA:th"} xref: MA:0001801 is_a: UBERON:0004702 ! respiratory system blood vessel endothelium is_a: UBERON:0004807 ! respiratory system epithelium relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003469 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system artery relationship: part_of UBERON:0003504 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system blood vessel relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: UBERON:0004849 name: respiratory system venous endothelium namespace: uberon def: "An endothelium of vein that is part of a respiratory system [Automatically generated definition]." [OBOL:automatic] synonym: "apparatus respiratorius endothelium of vein" EXACT [OBOL:automatic] synonym: "apparatus respiratorius vein endothelium" EXACT [OBOL:automatic] synonym: "apparatus respiratorius venous endothelium" EXACT [OBOL:automatic] synonym: "endothelium of vein of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "endothelium of vein of respiratory system" EXACT [OBOL:automatic] synonym: "respiratory system endothelium of vein" EXACT [OBOL:automatic] synonym: "respiratory system vein endothelium" EXACT [OBOL:automatic] synonym: "vein endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "vein endothelium of respiratory system" EXACT [OBOL:automatic] synonym: "venous endothelium of apparatus respiratorius" EXACT [OBOL:automatic] synonym: "venous endothelium of respiratory system" EXACT [OBOL:automatic] xref: EMAPA:37585 {source="MA:th"} xref: MA:0001811 is_a: UBERON:0004702 ! respiratory system blood vessel endothelium relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003504 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! respiratory system blood vessel [Term] id: UBERON:0004861 name: right lung alveolus namespace: uberon def: "An alveolus that is part of a right lung [Automatically generated definition]." [OBOL:automatic] synonym: "alveolus of right lung" EXACT [OBOL:automatic] xref: EMAPA:35997 xref: MA:0001786 xref: NCIT:C49278 xref: UMLS:C1709959 {source="ncithesaurus:Right_Lung_Alveolus"} is_a: UBERON:0002299 ! alveolus of lung relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006526 ! right lung alveolar system [Term] id: UBERON:0004862 name: left lung alveolus namespace: uberon def: "An alveolus that is part of a left lung [Automatically generated definition]." [OBOL:automatic] synonym: "alveolus of left lung" EXACT [OBOL:automatic] synonym: "alveolus of lobe of left lung" EXACT [OBOL:automatic] xref: EMAPA:19182 xref: MA:0001777 xref: NCIT:C49251 xref: UMLS:C1708673 {source="ncithesaurus:Left_Lung_Alveolus"} is_a: UBERON:0002299 ! alveolus of lung relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006525 ! left lung alveolar system [Term] id: UBERON:0004883 name: lung mesenchyme namespace: uberon def: "The mass of tissue made up of mesenchymal cells in the lung." [GO:0060484] subset: pheno_slim synonym: "lung-associated mesenchyme" EXACT [GO:0060484] synonym: "mesenchyme of lung" EXACT [OBOL:automatic] synonym: "pulmonary mesenchyme" EXACT [GO:0060484] xref: EMAPA:32866 relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0004884 name: lobar bronchus mesenchyme namespace: uberon def: "The mass of tissue composed of mesenchymal cells in the lobar bronchus.." [GO:0060483] synonym: "mesenchyme of lobar bronchus" EXACT [OBOL:automatic] xref: EMAPA:32698 is_a: UBERON:0004883 ! lung mesenchyme relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004886 name: lung hilus namespace: uberon def: "A depression on the surface of the lung where the bronchus, blood vessels and nerves enter." [GOC:lung_mtg, ISBN:0721662544] synonym: "hilum of lung" EXACT [] synonym: "hilum pulmonis" EXACT LATIN [FMA:7330, FMA:TA] synonym: "hilus of lung" EXACT [OBOL:automatic] synonym: "lung hilum" EXACT [OBOL:automatic] synonym: "pulmonary hilum" EXACT [FMA:7330] synonym: "pulmonary hilus" EXACT [OBOL:automatic] xref: EMAPA:36005 xref: FMA:7330 xref: MA:0003099 xref: NCIT:C49282 xref: SCTID:264017007 xref: UMLS:C0225701 {source="ncithesaurus:Hilar_Area_of_the_Lung"} xref: Wikipedia:Hilum_of_lung relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0004887 name: left lung hilus namespace: uberon def: "A lung hilus that is part of the left lung." [OBOL:automatic] synonym: "hilum of left lung" EXACT [] synonym: "hilus of left lung" EXACT [OBOL:automatic] synonym: "left lung hilum" EXACT [OBOL:automatic] synonym: "left pulmonary hilum" EXACT [FMA:9751] synonym: "left pulmonary hilus" EXACT [OBOL:automatic] xref: EHDAA2:0000962 xref: EHDAA:4965 xref: EMAPA:17980 xref: FMA:9751 xref: MA:0001781 xref: SCTID:361983000 xref: VHOG:0000483 is_a: UBERON:0004886 ! lung hilus relationship: part_of UBERON:0002168 ! left lung property_value: UBPROP:0000001 "The part of the left lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000483", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lung+hilus"} [Term] id: UBERON:0004888 name: right lung hilus namespace: uberon def: "A lung hilus that is part of the right lung." [OBOL:automatic] synonym: "hilum of right lung" EXACT [] synonym: "hilus of right lung" EXACT [OBOL:automatic] synonym: "right lung hilum" EXACT [OBOL:automatic] synonym: "right pulmonary hilum" EXACT [FMA:7330] synonym: "right pulmonary hilus" EXACT [OBOL:automatic] xref: EHDAA2:0001756 xref: EHDAA:4995 xref: EMAPA:17996 xref: FMA:7456 xref: MA:0001790 xref: SCTID:361968005 xref: VHOG:0000482 is_a: UBERON:0004886 ! lung hilus relationship: part_of UBERON:0002167 ! right lung property_value: UBPROP:0000001 "The part of the right lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000482", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lung+hilus"} [Term] id: UBERON:0004889 name: lobar bronchus vasculature namespace: uberon def: "Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs" [LG:0012616] is_a: UBERON:0000102 ! lung vasculature relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004890 name: right lung accessory lobe namespace: uberon def: "A specialized lobe of the right lung that extends to the left side of the organism" [LG:0012619] subset: pheno_slim synonym: "diaphragmatic lobe" NARROW [ISBN:0123813611] synonym: "intermediate lobe of right lung" NARROW [ISBN:0123813611] synonym: "right lung postcaval lobe" EXACT [MA:0000427] xref: EHDAA2:0001731 xref: EHDAA:4971 xref: EMAPA:17981 xref: MA:0000427 xref: VHOG:0000831 is_a: UBERON:0006518 ! right lung lobe relationship: part_of UBERON:0002167 ! right lung property_value: UBPROP:0000008 "in humans, the right lung typically has 3 lobes (superior, middle, inferior). The lobar fissures are often incomplete, making a connection between two apposed lobes. Conversely, more than the expected number of lobes may be produced by new fissures e.g. the azygous lobe of the lung. The additional lobes are termed 'accessory lobes' -- http://www.gpnotebook.co.uk/simplepage.cfm?ID=1120927803" xsd:string property_value: UBPROP:0000008 "In mouse this is sometimes divided into intermediate and diaphragmatic lobes" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0004892 name: lobar bronchus alveolar system namespace: uberon def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus" [LG:0012622] is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004893 name: interalveolar septum namespace: uberon def: "A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung." [LG:0012625, Wikipedia:Alveolar_septum] subset: pheno_slim synonym: "alveolar septum" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "septum interalveolare" RELATED [BTO:0003149] xref: BTO:0003149 xref: EMAPA:35433 xref: MA:0000421 xref: NCIT:C49473 xref: UMLS:C1706784 {source="ncithesaurus:Alveolar_Septum"} xref: Wikipedia:Alveolar_septum relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0004894 name: alveolar wall namespace: uberon alt_id: UBERON:0008872 def: "A wall that contains the alveoli" [LG:0012626, MP:0010903] subset: pheno_slim synonym: "alveolus wall" RELATED [EMAPA:35120] synonym: "pulmonary alveolar wall" EXACT [FMA:14117] synonym: "pulmonary interalveolar septum" EXACT [FMA:14117] synonym: "wall of pulmonary alveolus" EXACT [FMA:14117] xref: BTO:0002543 xref: EMAPA:35120 xref: FMA:14117 xref: MA:0002568 xref: NCIT:C13085 xref: SCTID:361965008 xref: UMLS:C0225695 {source="ncithesaurus:Alveolar_Wall"} relationship: part_of UBERON:0002299 ! alveolus of lung property_value: UBPROP:0000012 "part of wall in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0004895 name: alveolar smooth muscle namespace: uberon def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus" [LG:0012628] xref: EMAPA:35122 xref: MA:0002759 is_a: UBERON:0004233 ! lower respiratory tract smooth muscle relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0004896 name: right lung accessory lobe lobar bronchus namespace: uberon def: "The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi" [LG:0012636] synonym: "lobar bronchus of accessory lobe" BROAD [EMAPA:17982] synonym: "lobar bronchus of right lung accessory lobe" EXACT [VHOG:0000239] xref: EHDAA2:0001736 xref: EMAPA:17982 xref: VHOG:0000239 is_a: UBERON:0003404 ! lobar bronchus of right lung relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0004897 name: right lung accessory lobe lobar bronchus mesenchyme namespace: uberon def: "The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus" [LG:0012640] xref: EMAPA:17983 is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme relationship: part_of UBERON:0003404 ! lobar bronchus of right lung relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0004899 name: right lung cranial lobe lobar bronchus mesenchyme namespace: uberon def: "The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus" [LG:0012659] xref: EMAPA:17993 is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme relationship: part_of UBERON:0002170 ! upper lobe of right lung relationship: part_of UBERON:0003404 ! lobar bronchus of right lung [Term] id: UBERON:0004900 name: right lung middle lobe lobar bronchus mesenchyme namespace: uberon def: "The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus" [LG:0012672] xref: EMAPA:17999 is_a: UBERON:0004901 ! right lung lobar bronchus mesenchyme relationship: part_of UBERON:0002174 ! middle lobe of right lung relationship: part_of UBERON:0003404 ! lobar bronchus of right lung [Term] id: UBERON:0004901 name: right lung lobar bronchus mesenchyme namespace: uberon def: "The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus" [LG:0012681] xref: EMAPA:17665 is_a: UBERON:0004884 ! lobar bronchus mesenchyme is_a: UBERON:0009603 ! right lung associated mesenchyme relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004903 name: bronchoalveolar duct junction namespace: uberon def: "A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]." [MP:0004390] subset: pheno_slim xref: EMAPA:37448 {source="MA:th"} relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0004924 name: submucosa of pharynx namespace: uberon def: "The tissue underlying the tunica mucosa of the pharynx." [BTO:0002113] synonym: "pharyngeal submucosa" EXACT [FMA:75144] synonym: "pharyngobasilar fascia" RELATED [] synonym: "pharynx submucosa" EXACT [OBOL:automatic] synonym: "submucous coat of pharynx" RELATED [BTO:0002113] synonym: "submucous layer of pharynx" RELATED [BTO:0002113] synonym: "tela submucosa pharyngea" EXACT LATIN [FMA:75144, FMA:TA] synonym: "tela submucosa pharyngis" EXACT LATIN [BTO:0002113] xref: BTO:0002113 xref: FMA:75144 xref: SCTID:19594009 is_a: UBERON:0004777 ! respiratory system submucosa relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0004925 name: submucosa of laryngopharynx namespace: uberon def: "A submucosa that is part of a hypopharynx [Automatically generated definition]." [OBOL:automatic] synonym: "hypopharynx submucosa" EXACT [OBOL:automatic] synonym: "laryngeal pharynx submucosa" EXACT [OBOL:automatic] synonym: "laryngopharynx submucosa" EXACT [OBOL:automatic] synonym: "submucosa of hypopharynx" EXACT [OBOL:automatic] synonym: "submucosa of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "tela submucosa (pars laryngea pharyngis)" EXACT [FMA:55072] xref: FMA:55072 xref: SCTID:47496006 is_a: UBERON:0004924 ! submucosa of pharynx relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0004947 name: submucosa of right main bronchus namespace: uberon def: "A submucosa that is part of a right main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "right bronchus submucosa" EXACT [OBOL:automatic] synonym: "right main bronchial submucosa" EXACT [FMA:13139] synonym: "right main bronchus submucosa" EXACT [OBOL:automatic] synonym: "right principal bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of right bronchus" EXACT [OBOL:automatic] synonym: "submucosa of right principal bronchus" EXACT [OBOL:automatic] xref: FMA:13139 is_a: UBERON:0004949 ! submucosa of main bronchus relationship: part_of UBERON:0002177 ! right main bronchus [Term] id: UBERON:0004948 name: submucosa of left main bronchus namespace: uberon def: "A submucosa that is part of a left main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "left bronchus submucosa" EXACT [OBOL:automatic] synonym: "left main bronchial submucosa" EXACT [FMA:13140] synonym: "left main bronchus submucosa" EXACT [OBOL:automatic] synonym: "left principal bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of left bronchus" EXACT [OBOL:automatic] synonym: "submucosa of left principal bronchus" EXACT [OBOL:automatic] xref: FMA:13140 is_a: UBERON:0004949 ! submucosa of main bronchus relationship: part_of UBERON:0002178 ! left main bronchus [Term] id: UBERON:0004949 name: submucosa of main bronchus namespace: uberon def: "A submucosa that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis submucosa" EXACT [OBOL:automatic] synonym: "main bronchial submucosa" EXACT [FMA:13118] synonym: "main bronchus submucosa" EXACT [OBOL:automatic] synonym: "primary bronchus submucosa" EXACT [OBOL:automatic] synonym: "principal bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of bronchus principalis" EXACT [OBOL:automatic] synonym: "submucosa of primary bronchus" EXACT [OBOL:automatic] synonym: "submucosa of principal bronchus" EXACT [OBOL:automatic] xref: FMA:13118 is_a: UBERON:0001957 ! submucosa of bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0004950 name: submucosa of lobar bronchus namespace: uberon def: "A submucosa that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "lobar bronchial submucosa" EXACT [FMA:62669] synonym: "lobar bronchus submucosa" EXACT [OBOL:automatic] synonym: "secondary bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of secondary bronchus" EXACT [OBOL:automatic] xref: FMA:62669 is_a: UBERON:0001957 ! submucosa of bronchus relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0004951 name: submucosa of segmental bronchus namespace: uberon def: "A submucosa that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "segmental bronchial submucosa" EXACT [FMA:62670] synonym: "segmental bronchus submucosa" EXACT [OBOL:automatic] synonym: "submucosa of tertiary bronchus" EXACT [OBOL:automatic] synonym: "tertiary bronchus submucosa" EXACT [OBOL:automatic] xref: FMA:62670 is_a: UBERON:0001957 ! submucosa of bronchus relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0004952 name: submucosa of bronchiole namespace: uberon def: "A submucosa that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiole submucosa" EXACT [OBOL:automatic] synonym: "lobular bronchiole submucosa" EXACT [OBOL:automatic] synonym: "submucosa of lobular bronchiole" EXACT [OBOL:automatic] xref: FMA:62775 is_a: UBERON:0001957 ! submucosa of bronchus relationship: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0004982 name: mucosa of epiglottis namespace: uberon def: "A mucosa that is part of a epiglottis [Automatically generated definition]." [OBOL:automatic] synonym: "epiglottis mucosa" EXACT [OBOL:automatic] synonym: "epiglottis mucosa of organ" EXACT [OBOL:automatic] synonym: "epiglottis mucous membrane" EXACT [OBOL:automatic] synonym: "epiglottis organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of epiglottis" EXACT [OBOL:automatic] synonym: "mucous membrane of epiglottis" EXACT [OBOL:automatic] synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic] xref: FMA:64015 xref: SCTID:156751001 is_a: UBERON:0004987 ! mucosa of laryngopharynx relationship: part_of UBERON:0000388 ! epiglottis [Term] id: UBERON:0004987 name: mucosa of laryngopharynx namespace: uberon def: "A mucosa that is part of a hypopharynx [Automatically generated definition]." [OBOL:automatic] synonym: "hypopharynx mucosa" EXACT [OBOL:automatic] synonym: "hypopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "hypopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "hypopharynx organ mucosa" EXACT [OBOL:automatic] synonym: "laryngeal pharynx mucosa" EXACT [OBOL:automatic] synonym: "laryngeal pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "laryngeal pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "laryngeal pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "laryngopharynx mucosa" EXACT [OBOL:automatic] synonym: "laryngopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "laryngopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "laryngopharynx organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of hypopharynx" EXACT [OBOL:automatic] synonym: "mucosa of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of hypopharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of laryngopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of hypopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of laryngopharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of hypopharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of laryngeal pharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of laryngopharynx" EXACT [OBOL:automatic] xref: FMA:55030 xref: SCTID:362126008 is_a: UBERON:0000355 ! pharyngeal mucosa relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0005022 name: mucosa of nasopharynx namespace: uberon def: "A mucosa that is part of a nasopharynx [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of nasopharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of rhinopharynx" EXACT [OBOL:automatic] synonym: "mucosa of rhinopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of nasopharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of rhinopharynx" EXACT [OBOL:automatic] synonym: "nasal part of pharynx mucosa" EXACT [OBOL:automatic] synonym: "nasal part of pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "nasal part of pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "nasal part of pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "nasopharynx mucosa" EXACT [OBOL:automatic] synonym: "nasopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "nasopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "nasopharynx organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of nasal part of pharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of nasopharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of rhinopharynx" EXACT [OBOL:automatic] synonym: "rhinopharynx mucosa" EXACT [OBOL:automatic] synonym: "rhinopharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "rhinopharynx mucous membrane" EXACT [OBOL:automatic] synonym: "rhinopharynx organ mucosa" EXACT [OBOL:automatic] xref: FMA:54971 xref: SCTID:361938001 is_a: UBERON:0000355 ! pharyngeal mucosa is_a: UBERON:0000379 ! tracheal mucosa relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0005023 name: mucosa of oropharynx namespace: uberon def: "A mucosa that is part of a oropharynx [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucosa of organ of oropharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of oral part of pharynx" EXACT [OBOL:automatic] synonym: "mucous membrane of oropharynx" EXACT [OBOL:automatic] synonym: "oral part of pharynx mucosa" EXACT [OBOL:automatic] synonym: "oral part of pharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "oral part of pharynx mucous membrane" EXACT [OBOL:automatic] synonym: "oral part of pharynx organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of oral part of pharynx" EXACT [OBOL:automatic] synonym: "organ mucosa of oropharynx" EXACT [OBOL:automatic] synonym: "oropharynx mucosa" EXACT [OBOL:automatic] synonym: "oropharynx mucosa of organ" EXACT [OBOL:automatic] synonym: "oropharynx mucous membrane" EXACT [OBOL:automatic] synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic] xref: FMA:54933 xref: SCTID:144632009 is_a: UBERON:0000355 ! pharyngeal mucosa relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0005034 name: mucosa of right main bronchus namespace: uberon def: "A mucosa that is part of a right main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of organ of right bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of right main bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of right principal bronchus" EXACT [OBOL:automatic] synonym: "mucosa of right bronchus" EXACT [OBOL:automatic] synonym: "mucosa of right principal bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of right bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of right main bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of right principal bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of right bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of right main bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of right principal bronchus" EXACT [OBOL:automatic] synonym: "right bronchus mucosa" EXACT [OBOL:automatic] synonym: "right bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "right bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "right bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "right main bronchial mucosa" EXACT [FMA:13137] synonym: "right main bronchus mucosa" EXACT [OBOL:automatic] synonym: "right main bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "right main bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "right main bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "right principal bronchus mucosa" EXACT [OBOL:automatic] synonym: "right principal bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "right principal bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "right principal bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:13137 is_a: UBERON:0005036 ! mucosa of main bronchus relationship: part_of UBERON:0002177 ! right main bronchus [Term] id: UBERON:0005035 name: mucosa of left main bronchus namespace: uberon def: "A mucosa that is part of a left main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "left bronchus mucosa" EXACT [OBOL:automatic] synonym: "left bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "left bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "left bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "left main bronchial mucosa" EXACT [FMA:13138] synonym: "left main bronchus mucosa" EXACT [OBOL:automatic] synonym: "left main bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "left main bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "left main bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "left principal bronchus mucosa" EXACT [OBOL:automatic] synonym: "left principal bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "left principal bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "left principal bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of left bronchus" EXACT [OBOL:automatic] synonym: "mucosa of left principal bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of left bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of left main bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of left principal bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of left bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of left main bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of left principal bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of left bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of left main bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of left principal bronchus" EXACT [OBOL:automatic] xref: FMA:13138 is_a: UBERON:0005036 ! mucosa of main bronchus relationship: part_of UBERON:0002178 ! left main bronchus [Term] id: UBERON:0005036 name: mucosa of main bronchus namespace: uberon def: "A mucosa that is part of a main bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "bronchus principalis mucosa" EXACT [OBOL:automatic] synonym: "bronchus principalis mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchus principalis mucous membrane" EXACT [OBOL:automatic] synonym: "bronchus principalis organ mucosa" EXACT [OBOL:automatic] synonym: "main bronchial mucosa" EXACT [FMA:13115] synonym: "main bronchus mucosa" EXACT [OBOL:automatic] synonym: "main bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "main bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "main bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchus principalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchus principalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of main bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of primary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of principal bronchus" EXACT [OBOL:automatic] synonym: "mucosa of primary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of principal bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchus principalis" EXACT [OBOL:automatic] synonym: "mucous membrane of main bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of primary bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of principal bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchus principalis" EXACT [OBOL:automatic] synonym: "organ mucosa of main bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of primary bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of principal bronchus" EXACT [OBOL:automatic] synonym: "primary bronchus mucosa" EXACT [OBOL:automatic] synonym: "primary bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "primary bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "primary bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "principal bronchus mucosa" EXACT [OBOL:automatic] synonym: "principal bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "principal bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "principal bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:13115 is_a: UBERON:0000410 ! bronchial mucosa relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0005037 name: mucosa of lobar bronchus namespace: uberon def: "A mucosa that is part of a lobar bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "lobar bronchial mucosa" EXACT [FMA:62668] synonym: "lobar bronchus mucosa" EXACT [OBOL:automatic] synonym: "lobar bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "lobar bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "lobar bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of lobar bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of secondary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of secondary bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of lobar bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of secondary bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of lobar bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of secondary bronchus" EXACT [OBOL:automatic] synonym: "secondary bronchus mucosa" EXACT [OBOL:automatic] synonym: "secondary bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "secondary bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "secondary bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:62668 is_a: UBERON:0000410 ! bronchial mucosa relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0005038 name: mucosa of segmental bronchus namespace: uberon def: "A mucosa that is part of a segmental bronchus [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of organ of segmental bronchus" EXACT [OBOL:automatic] synonym: "mucosa of organ of tertiary bronchus" EXACT [OBOL:automatic] synonym: "mucosa of tertiary bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of segmental bronchus" EXACT [OBOL:automatic] synonym: "mucous membrane of tertiary bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of segmental bronchus" EXACT [OBOL:automatic] synonym: "organ mucosa of tertiary bronchus" EXACT [OBOL:automatic] synonym: "segmental bronchial mucosa" EXACT [FMA:62666] synonym: "segmental bronchus mucosa" EXACT [OBOL:automatic] synonym: "segmental bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "segmental bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "segmental bronchus organ mucosa" EXACT [OBOL:automatic] synonym: "tertiary bronchus mucosa" EXACT [OBOL:automatic] synonym: "tertiary bronchus mucosa of organ" EXACT [OBOL:automatic] synonym: "tertiary bronchus mucous membrane" EXACT [OBOL:automatic] synonym: "tertiary bronchus organ mucosa" EXACT [OBOL:automatic] xref: FMA:62666 is_a: UBERON:0000410 ! bronchial mucosa relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0005039 name: mucosa of bronchiole namespace: uberon def: "A mucosa that is part of a bronchiole [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiole mucosa" EXACT [OBOL:automatic] synonym: "bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "bronchiole organ mucosa" EXACT [OBOL:automatic] synonym: "lobular bronchiole mucosa" EXACT [OBOL:automatic] synonym: "lobular bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "lobular bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "lobular bronchiole organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of lobular bronchiole" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchiole" EXACT [OBOL:automatic] synonym: "mucosa of organ of lobular bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of lobular bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of lobular bronchiole" EXACT [OBOL:automatic] xref: FMA:263230 xref: FMA:62774 xref: SCTID:10887006 is_a: UBERON:0000410 ! bronchial mucosa relationship: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0005040 name: mucosa of terminal bronchiole namespace: uberon def: "A mucosa that is part of a terminal bronchiole [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiolus terminalis mucosa" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis mucous membrane" EXACT [OBOL:automatic] synonym: "bronchiolus terminalis organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "mucosa of organ of terminal bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "mucous membrane of terminal bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchiolus terminalis" EXACT [OBOL:automatic] synonym: "organ mucosa of terminal bronchiole" EXACT [OBOL:automatic] synonym: "terminal bronchiole mucosa" EXACT [OBOL:automatic] synonym: "terminal bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "terminal bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "terminal bronchiole organ mucosa" EXACT [OBOL:automatic] xref: FMA:263232 is_a: UBERON:0005039 ! mucosa of bronchiole relationship: part_of UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0005041 name: mucosa of respiratory bronchiole namespace: uberon def: "A mucosa that is part of a respiratory bronchiole [Automatically generated definition]." [OBOL:automatic] synonym: "bronchiolus respiratorius mucosa" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius mucosa of organ" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius mucous membrane" EXACT [OBOL:automatic] synonym: "bronchiolus respiratorius organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "mucosa of organ of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "mucous membrane of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "mucous membrane of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "organ mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic] synonym: "organ mucosa of respiratory bronchiole" EXACT [OBOL:automatic] synonym: "respiratory bronchiole mucosa" EXACT [OBOL:automatic] synonym: "respiratory bronchiole mucosa of organ" EXACT [OBOL:automatic] synonym: "respiratory bronchiole mucous membrane" EXACT [OBOL:automatic] synonym: "respiratory bronchiole organ mucosa" EXACT [OBOL:automatic] xref: FMA:263238 is_a: UBERON:0005039 ! mucosa of bronchiole relationship: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0005047 name: mucosa of vocal fold namespace: uberon def: "A mucosa that is part of a vocal cord [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of glottis" EXACT [FMA:64017] synonym: "mucosa of organ of true vocal cord" EXACT [OBOL:automatic] synonym: "mucosa of organ of vocal cord" EXACT [OBOL:automatic] synonym: "mucosa of true vocal cord" EXACT [OBOL:automatic] synonym: "mucosa of vocal cord" EXACT [OBOL:automatic] synonym: "mucous membrane of true vocal cord" EXACT [OBOL:automatic] synonym: "mucous membrane of vocal cord" EXACT [OBOL:automatic] synonym: "organ mucosa of true vocal cord" EXACT [OBOL:automatic] synonym: "organ mucosa of vocal cord" EXACT [OBOL:automatic] synonym: "true vocal cord mucosa" EXACT [OBOL:automatic] synonym: "true vocal cord mucosa of organ" EXACT [OBOL:automatic] synonym: "true vocal cord mucous membrane" EXACT [OBOL:automatic] synonym: "true vocal cord organ mucosa" EXACT [OBOL:automatic] synonym: "vocal cord mucosa" EXACT [OBOL:automatic] synonym: "vocal cord mucosa of organ" EXACT [OBOL:automatic] synonym: "vocal cord mucous membrane" EXACT [OBOL:automatic] synonym: "vocal cord organ mucosa" EXACT [OBOL:automatic] synonym: "vocal fold mucosa" EXACT [FMA:64017] xref: FMA:64017 is_a: UBERON:0001824 ! mucosa of larynx relationship: part_of UBERON:0003706 ! laryngeal vocal fold [Term] id: UBERON:0005155 name: open tracheal system namespace: uberon def: "An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424] subset: uberon_slim synonym: "invertebrate tracheal system" EXACT [] synonym: "open tracheal system" EXACT [] synonym: "tracheal system" BROAD SENSU [FBbt:00005024] xref: BTO:0003870 xref: FBbt:00005024 xref: SPD:0000427 xref: TADS:0000043 is_a: UBERON:0001004 ! respiratory system [Term] id: UBERON:0005203 name: trachea gland namespace: uberon def: "a tubuloacinar seromucous gland that is located principally in the submucosa of the trachea. Excretory ducts from this gland pass through the lamina propria to the tracheal lumen." [http://medical-dictionary.thefreedictionary.com/tracheal+glands, https://github.com/obophenotype/uberon/issues/1197, ISBN:1451113412, MGI:Anna, PMID:15973734] subset: organ_slim subset: pheno_slim synonym: "glandula trachealis" EXACT [FMA:7473] synonym: "tracheal gland" EXACT [FMA:7473] synonym: "tubular seromucous gland of trachea" RELATED [FMA:7473] xref: EMAPA:36574 xref: FMA:7473 xref: MA:0002937 xref: SCTID:197423006 is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0002202 ! submucosa of trachea property_value: UBPROP:0000009 "These glands secrete mucus, lysozyme, defensins, and other agents that help protect the lungs from particles and infectious agents." xsd:string [Term] id: UBERON:0005204 name: larynx submucosa gland namespace: uberon def: "A gland that is part of a larynx submucosa [Automatically generated definition]." [OBOL:automatic] subset: organ_slim synonym: "laryngeal submucosa gland" RELATED [EMAPA:35475] xref: EMAPA:35475 xref: MA:0002729 is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0004778 ! larynx submucosa [Term] id: UBERON:0005207 name: tonsil capsule namespace: uberon def: "A capsule that is part of a tonsil [Automatically generated definition]." [OBOL:automatic] xref: FMA:294647 xref: MA:0000776 relationship: part_of UBERON:0002372 ! tonsil [Term] id: UBERON:0005244 name: lobar bronchus of right lung cranial lobe namespace: uberon alt_id: UBERON:0012060 def: "." [Wikipedia:Eparterial_bronchus] synonym: "eparterial bronchus" RELATED [Wikipedia:Eparterial_bronchus] synonym: "lobar bronchus of cranial lobe" BROAD [EMAPA:17992] synonym: "right lung cranial lobe lobar bronchus" EXACT [EHDAA2:0001752] synonym: "right superior lobar bronchus" EXACT [FMA:7397] synonym: "right upper lobar bronchus" EXACT [FMA:7397] synonym: "right upper lobe bronchus" EXACT [FMA:7397] xref: EHDAA2:0001752 xref: EMAPA:17992 xref: FMA:7397 xref: SCTID:181806003 xref: SCTID:361956001 xref: VHOG:0000240 xref: Wikipedia:Eparterial_bronchus is_a: UBERON:0003404 ! lobar bronchus of right lung relationship: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: UBERON:0005245 name: lobar bronchus of right lung caudal lobe namespace: uberon def: "A lobar bronchus that is part of a lower lobe of right lung [Automatically generated definition]." [OBOL:automatic] synonym: "lobar bronchus of caudal lobe" EXACT [EMAPA:17987] xref: EHDAA2:0001744 xref: EMAPA:17987 xref: VHOG:0000250 is_a: UBERON:0003404 ! lobar bronchus of right lung relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: UBERON:0005314 name: alveolar primary septum namespace: uberon def: "A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]." [GO:0061143] is_a: UBERON:0004821 ! pulmonary alveolus epithelium relationship: part_of UBERON:0000116 ! lung saccule property_value: IAO:0000116 "TODO - check UBERON:0004893 interalveolar septum" xsd:string [Term] id: UBERON:0005315 name: alveolar secondary septum namespace: uberon def: "A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]." [GO:0061144] is_a: UBERON:0004821 ! pulmonary alveolus epithelium relationship: part_of UBERON:0000116 ! lung saccule property_value: IAO:0000116 "TODO - check UBERON:0004893 interalveolar septum" xsd:string [Term] id: UBERON:0005384 name: nasal cavity epithelium namespace: uberon def: "An epithelium that lines the nasal cavity." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "nasal epithelium" EXACT [FMA:63140] synonym: "nasal mucosa" RELATED [MA:0001324] xref: CALOHA:TS-0656 xref: EHDAA2:0001227 xref: EHDAA:6803 xref: EMAPA:17605 xref: FMA:63140 xref: MA:0001324 xref: NCIT:C49261 xref: UMLS:C1709151 {source="ncithesaurus:Nasal_Cavity_Epithelium"} xref: VHOG:0000501 is_a: UBERON:0004814 ! upper respiratory tract epithelium relationship: part_of UBERON:0001826 ! nasal cavity mucosa property_value: IAO:0000116 "this class may in future be split into the embryonic precursor of the oronasal membrane and the structure that is part of the mucosa in the developed organism" xsd:string [Term] id: UBERON:0005385 name: nasal cavity respiratory epithelium namespace: uberon def: "An epithelium that is part of the respiratory segment of the nasal mucosa [Automatically generated definition]." [https://github.com/obophenotype/uberon/issues/50, OBOL:automatic] xref: EHDAA2:0001230 xref: EHDAA:6807 xref: EMAPA:17607 xref: MA:0001326 xref: NCIT:C49262 xref: UMLS:C1709152 {source="ncithesaurus:Nasal_Cavity_Respiratory_Epithelium"} is_a: UBERON:0005384 ! nasal cavity epithelium relationship: part_of UBERON:0015786 ! respiratory segment of nasal mucosa property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0005386 name: olfactory segment of nasal mucosa namespace: uberon def: "That portion of the nasal mucosa containing the sensory endings for olfaction; the organ of smell[MESH]." [MESH:A04.531.520.573, Wikipedia:Olfactory_mucosa] subset: pheno_slim synonym: "olfactory area of nasal mucosa" EXACT [FMA:77199] synonym: "olfactory mucosa" EXACT [] synonym: "olfactory part of nasal mucosa" EXACT [FMA:77199] synonym: "olfactory zone of nasal mucosa" EXACT [FMA:77199] synonym: "pars olfactoria tunicae mucosae nasi" EXACT LATIN [FMA:77199, FMA:TA] synonym: "pars olfactoria tunicae mucosae nasi" RELATED LATIN [Wikipedia:Olfactory_mucosa] xref: CALOHA:TS-2197 xref: EMAPA:37918 {source="MA:th"} xref: FMA:77199 xref: GAID:303 xref: MESH:D009831 xref: NCIT:C33205 xref: UMLS:C0028937 {source="ncithesaurus:Olfactory_Mucosa"} xref: Wikipedia:Olfactory_mucosa is_a: UBERON:0001826 ! nasal cavity mucosa property_value: UBPROP:0000001 "The olfactory mucosa is located in the upper region of the nasal cavity and is made up of the olfactory epithelium and the underlying lamina propria, connective tissue containing fibroblasts, blood vessels, Bowman's glands and bundles of fine axons from the olfactory neurons. The mucus protects the olfactory epithelium and allows odors to dissolve so that they can be detected by olfactory receptor neurons. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP][Wikipedia:Olfactory_mucosa]." xsd:string {source="Wikipedia:Olfactory_mucosa"} [Term] id: UBERON:0005562 name: thymus primordium namespace: uberon def: "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]." [ZFA:0001077] subset: efo_slim subset: vertebrate_core synonym: "thymic primordium" EXACT [OBOL:automatic] synonym: "thymic rudiment" EXACT [ZFA:0001077] xref: EFO:0003622 xref: EHDAA2:0002023 xref: EHDAA:2969 xref: EMAPA:17523 xref: TAO:0001077 xref: ZFA:0001077 is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0003295 {source="EHDAA2"} ! pharyngeal gland property_value: IAO:0000116 "we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution." xsd:string {source="ISBN:0781714125"} property_value: UBPROP:0000001 "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001077", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "variability of developmental origin: In fish, thymic primordia are generated by all the pouches except the first. However, in avians the thymus arises from pouches 3 and 4, whereas in humans it is only generated by the third pouch[PMID:16313389] The thymus arises from the second pouch in frogs, 2-6 in cartilaginous fish, 2-3 in reptiles, 3 or 4 in bony fish, birds and mammals. The final number is variable - 5 paired organs in sharks, 4 in caecilians, 3 in urodeles, 1 in many teleost, anurans and many mammals" xsd:string {source="ISBN:0781714125"} [Term] id: UBERON:0005639 name: right lung cranial lobe epithelium namespace: uberon def: "An epithelium that is part of a upper lobe of right lung." [OBOL:automatic] xref: EHDAA2:0001751 is_a: UBERON:0003364 ! epithelium of right lung relationship: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: UBERON:0005640 name: right lung caudal lobe epithelium namespace: uberon def: "An epithelium that is part of a lower lobe of right lung." [OBOL:automatic] xref: EHDAA2:0001743 is_a: UBERON:0003364 ! epithelium of right lung relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: UBERON:0005655 name: right lung accessory lobe epithelium namespace: uberon def: "An epithelium that is part of a right lung accessory lobe." [OBOL:automatic] xref: EHDAA2:0001735 is_a: UBERON:0003364 ! epithelium of right lung relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0005672 name: right lung endothelium namespace: uberon def: "An endothelium that is part of a right lung." [OBOL:automatic] xref: EHDAA2:0001755 is_a: UBERON:0003364 ! epithelium of right lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0005673 name: left lung endothelium namespace: uberon def: "An endothelium that is part of a left lung." [OBOL:automatic] xref: EHDAA2:0000961 is_a: UBERON:0003365 ! epithelium of left lung relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0005674 name: right lung cranial lobe endothelium namespace: uberon def: "An endothelium that is part of a upper lobe of right lung." [OBOL:automatic] xref: EHDAA:4991 xref: RETIRED_EHDAA2:0001750 is_a: UBERON:0005639 ! right lung cranial lobe epithelium is_a: UBERON:0005672 ! right lung endothelium relationship: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: UBERON:0005675 name: right lung caudal lobe endothelium namespace: uberon def: "An endothelium that is part of a lower lobe of right lung." [OBOL:automatic] xref: EHDAA:4983 xref: RETIRED_EHDAA2:0001742 is_a: UBERON:0005640 ! right lung caudal lobe epithelium is_a: UBERON:0005672 ! right lung endothelium relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: UBERON:0005676 name: right lung accessory lobe endothelium namespace: uberon def: "An endothelium that is part of a right lung accessory lobe." [OBOL:automatic] xref: EHDAA:4975 xref: RETIRED_EHDAA2:0001734 is_a: UBERON:0005655 ! right lung accessory lobe epithelium is_a: UBERON:0005672 ! right lung endothelium relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0005678 name: right lung cranial lobe segmental bronchus namespace: uberon def: "A segmental bronchus that is part of a upper lobe of right lung." [OBOL:automatic] xref: EHDAA2:0001754 is_a: UBERON:0002184 ! segmental bronchus relationship: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: UBERON:0005679 name: right lung caudal lobe segmental bronchus namespace: uberon def: "A segmental bronchus that is part of a lower lobe of right lung." [OBOL:automatic] xref: EHDAA2:0001746 is_a: UBERON:0002184 ! segmental bronchus relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: UBERON:0005680 name: right lung accessory lobe segmental bronchus namespace: uberon def: "A segmental bronchus that is part of a right lung accessory lobe." [OBOL:automatic] xref: EHDAA2:0001738 is_a: UBERON:0002184 ! segmental bronchus relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0005681 name: right lung upper lobe bronchiole namespace: uberon def: "A bronchiole that is part of a upper lobe of right lung." [OBOL:automatic] synonym: "bronchiole of right upper lobe" EXACT [] synonym: "bronchiole of right upper lobe of lung" EXACT [] synonym: "right lung cranial lobe bronchiole" EXACT [EHDAA2:0001749] xref: EHDAA2:0001749 xref: EMAPA:19006 xref: SCTID:84841004 is_a: UBERON:0003538 ! right lung bronchiole relationship: part_of UBERON:0002170 ! upper lobe of right lung [Term] id: UBERON:0005682 name: right lung accessory lobe bronchiole namespace: uberon def: "A bronchiole that is part of a right lung accessory lobe." [OBOL:automatic] xref: EHDAA2:0001733 xref: EMAPA:19002 is_a: UBERON:0003538 ! right lung bronchiole relationship: part_of UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0005872 name: 1st arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 1st and 2nd pharyngeal arch." [ISBN:0124020607, VHOG:OG] subset: vertebrate_core synonym: "1st arch branchial groove" EXACT [EHDAA2:0000008] synonym: "1st arch groove ectoderm" EXACT [EHDAA2:0000009] synonym: "1st branchial cleft" RELATED [EMAPA:16119] synonym: "1st pharyngeal cleft" RELATED [VHOG:0000969] synonym: "1st pharyngeal groove" EXACT [VHOG:0000969] synonym: "1st pharyngeal groove ectoderm" EXACT [VHOG:0000554] synonym: "branchial groove of 1st arch" EXACT [EMAPA:16119] xref: EHDAA2:0000009 xref: EHDAA:575 xref: EMAPA:16119 xref: VHOG:0000554 xref: VHOG:0000969 is_a: UBERON:0005879 ! pharyngeal cleft property_value: UBPROP:0000003 "In all jawed vertebrates the first arch forms the jaw, while the second arch forms the hyoid apparatus. These two arches are separated by the first pharyngeal pouch and cleft.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000969", ontology="VHOG", source="DOI:10.1016/j.semcdb.2010.01.022 Grevellec A, Tucker AS, The pharyngeal pouches and clefts: development, evolution, structure and derivatives. Seminars in Cell and Developmental Biology (2010)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005873 name: 2nd arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 2nd and 3rd pharyngeal arch." [ISBN:0124020607, VHOG:OG] subset: vertebrate_core synonym: "2nd arch branchial groove" EXACT [EHDAA2:0000054] synonym: "2nd arch groove ectoderm" EXACT [EHDAA2:0000057] synonym: "2nd branchial cleft" RELATED [EMAPA:16396] synonym: "2nd pharyngeal cleft" RELATED [VHOG:0000972] synonym: "2nd pharyngeal groove" EXACT [VHOG:0000972] synonym: "2nd pharyngeal groove ectoderm" EXACT [VHOG:0000568] synonym: "branchial groove of 2nd arch" EXACT [EMAPA:16396] xref: EHDAA2:0000057 xref: EHDAA:613 xref: EMAPA:16396 xref: VHOG:0000568 xref: VHOG:0000972 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0005874 name: 3rd arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 3rd and 4th pharyngeal arch." [ISBN:0124020607, VHOG:OG] subset: vertebrate_core synonym: "3rd arch branchial groove" EXACT [EHDAA2:0000071] synonym: "3rd arch groove ectoderm" EXACT [EHDAA2:0000074] synonym: "3rd branchial cleft" RELATED [EMAPA:16581] synonym: "3rd pharyngeal cleft" RELATED [VHOG:0000973] synonym: "3rd pharyngeal groove" EXACT [VHOG:0000973] synonym: "3rd pharyngeal groove ectoderm" EXACT [VHOG:0000572] synonym: "branchial groove of 3rd arch" EXACT [EMAPA:16581] xref: EHDAA2:0000074 xref: EHDAA:1082 xref: EMAPA:16581 xref: VHOG:0000572 xref: VHOG:0000973 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0005875 name: 4th arch pharyngeal cleft namespace: uberon def: "A groove that is situated between the 4th and 5th pharyngeal arch." [ISBN:0124020607, VHOG:OG] subset: vertebrate_core synonym: "4th arch branchial groove" EXACT [RETIRED_EHDAA2:0000088] synonym: "4th arch pharyngeal groove ectoderm" EXACT [EHDAA2:0000089] synonym: "4th branchial cleft" RELATED [EMAPA:16761] synonym: "4th pharyngeal cleft" RELATED [VHOG:0000968] synonym: "4th pharyngeal groove" EXACT [VHOG:0000968] synonym: "4th pharyngeal groove ectoderm" EXACT [VHOG:0000577] synonym: "branchial groove of 4th arch" EXACT [EMAPA:16761] xref: EHDAA2:0000089 xref: EHDAA:1665 xref: EMAPA:16761 xref: EMAPA:16762 xref: RETIRED_EHDAA2:0000088 xref: VHOG:0000577 xref: VHOG:0000968 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0005879 name: pharyngeal cleft namespace: uberon def: "An external pocketing of pharyngeal ectoderm that contacts a region of endoderm (a pharyngeal pouch) and interdigitates in the anterior and posterior directions by the pharyngeal arches." [http://orcid.org/0000-0002-6601-2165, PMID:23020903] subset: pheno_slim synonym: "branchial cleft" RELATED [Wikipedia:Pharyngeal_groove] synonym: "branchial groove" RELATED [AAO:0010623, Wikipedia:Pharyngeal_groove] synonym: "gill cleft" NARROW [] synonym: "Kiemenspalten" RELATED [] synonym: "pharyngeal ectodermal cleft" RELATED [] synonym: "pharyngeal groove" BROAD [Wikipedia:Pharyngeal_groove] synonym: "pharyngeal groove ectoderm" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pharyngeal slit" RELATED INCONSISTENT [] synonym: "sulcus pharyngei" RELATED LATIN [Wikipedia:Pharyngeal_groove] xref: AAO:0010623 xref: EMAPA:32750 xref: FMA:295672 xref: NCIT:C34250 xref: UMLS:C1280559 {source="ncithesaurus:Pharyngeal_Groove"} xref: Wikipedia:Pharyngeal_groove is_a: UBERON:0016545 ! pharyngeal ectoderm property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg xsd:anyURI property_value: IAO:0000116 "Note we use overlaps as the relationship to the arches" xsd:string property_value: UBPROP:0000012 "EMAPA distinguishes between the groove ectoderm and epithelium, with the latter arising after the former" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0006257 name: laryngotracheal groove namespace: uberon def: "A groove in the floor of the pharynx formed from the ventral diverticulum of endoderm that arises from the floor of the foregut caudal to the pharynx. This structure is the precursor for the larynx and trachea[WP,edited]." [http://isc.temple.edu/marino/embryology/resp98/respdev.htm, Wikipedia:Laryngotracheal_groove] synonym: "laryngo-tracheal groove" EXACT [EHDAA2:0004073] synonym: "laryngo-tracheal tube" RELATED [Wikipedia:Laryngotracheal_groove] synonym: "laryngotracheal endoderm" RELATED [] synonym: "sulcus laryngotrachealis" EXACT LATIN [Wikipedia:Laryngotracheal_groove] xref: EHDAA2:0004073 xref: EHDAA:1005 xref: EMAPA:16739 xref: NCIT:C34198 xref: RETIRED_EHDAA2:0000909 xref: SCTID:361426003 xref: UMLS:C1283960 {source="ncithesaurus:Laryngotracheal_Tube"} xref: VHOG:0001404 xref: Wikipedia:Laryngotracheal_groove relationship: part_of UBERON:0001558 {source="EHDAA2"} ! lower respiratory tract property_value: IAO:0000116 "Note we currently have pharynx as part of the upper respiratory tract - separate by development?" xsd:string property_value: UBPROP:0000003 "Lung development begins with the appearance of the laryngotracheal groove, which is a small diverticulum that arises from the floor of the primitive pharynx at E9 in mouse and 4 wk in human.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001404", ontology="VHOG", source="PMID:15817505 Warburton D, Bellusci S, De Langhe S, Del Moral PM, Fleury V, Mailleux A, Tefft D, Unbekandt M, Wang K, Shi W, Molecular mechanisms of early lung specification and branching morphogenesis. Pediatric Research (2005)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0006325 name: laryngeal intrinsic ligament namespace: uberon synonym: "intrinsic ligament of larynx" EXACT [FMA:72058] xref: EMAPA:37628 {source="MA:th"} xref: FMA:72058 xref: MA:0001757 xref: SCTID:279557001 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0006326 name: base of arytenoid namespace: uberon synonym: "arytenoid cartilage base" EXACT [FMA:55349] synonym: "base of arytenoid" EXACT [FMA:55349] synonym: "base of arytenoid cartilage" EXACT [FMA:55349] xref: EMAPA:37424 {source="MA:th"} xref: FMA:55349 xref: MA:0001761 xref: SCTID:279532006 is_a: UBERON:0003583 ! larynx connective tissue relationship: part_of UBERON:0001740 ! arytenoid cartilage [Term] id: UBERON:0006327 name: laryngeal extrinsic muscle namespace: uberon synonym: "extrinsic muscle of larynx" EXACT [FMA:55225] xref: EMAPA:37629 {source="MA:th"} xref: FMA:55225 xref: MA:0001769 xref: SCTID:244808004 is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0006328 name: laryngeal intrinsic muscle namespace: uberon synonym: "intrinsic laryneal muscles" RELATED [FEED:FEED] synonym: "intrinsic laryngeal muscle" EXACT [FEED:FEED] synonym: "intrinsic muscle of larynx" EXACT [FMA:55226] xref: EMAPA:37630 {source="MA:th"} xref: FMA:55226 xref: MA:0001770 xref: SCTID:244810002 is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0006494 name: apex of arytenoid namespace: uberon synonym: "apex of arytenoid cartilage" EXACT [FMA:55348] synonym: "arytenoid cartilage apex" EXACT [FMA:55348] xref: EMAPA:37423 {source="MA:th"} xref: FMA:55348 xref: MA:0001760 xref: SCTID:279534007 is_a: UBERON:0003583 ! larynx connective tissue relationship: part_of UBERON:0001740 {source="MA"} ! arytenoid cartilage [Term] id: UBERON:0006518 name: right lung lobe namespace: uberon def: "A lobe of lung that is part of a right lung." [OBOL:automatic] synonym: "lobe of right lung" EXACT [] synonym: "lobe of the right lung" EXACT [ncithesaurus:Lobe_of_the_Right_Lung] xref: EMAPA:35155 xref: MA:0001791 xref: NCIT:C48944 xref: SCTID:272654004 xref: UMLS:C1285106 {source="ncithesaurus:Lobe_of_the_Right_Lung"} is_a: UBERON:0000101 ! lobe of lung relationship: part_of UBERON:0002167 ! right lung property_value: UBPROP:0000008 "4 in mice, divided into 3 in human by two interlobal fissures" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0006524 name: alveolar system namespace: uberon def: "System pertaining to a bronchus and alveoli." [BTO:0000136] subset: pheno_slim synonym: "bronchoalveolar system" RELATED [BTO:0000136] synonym: "pulmonary alveolar system" EXACT [MP:0010899] xref: BTO:0000136 xref: CALOHA:TS-1296 xref: EMAPA:32692 xref: MA:0000416 relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0006525 name: left lung alveolar system namespace: uberon xref: EMAPA:19001 xref: MA:0001775 relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0006526 name: right lung alveolar system namespace: uberon xref: EMAPA:35717 xref: MA:0001784 relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0006670 name: central tendon of diaphragm namespace: uberon def: "the three-lobed cloverleaf-shaped aponeurosis situated at the center of the diaphragm; the central tendon is fused with the fibrous pericardium that provides attachment for the muscle fibers" [MGI:csmith, MP:0012061] subset: pheno_slim synonym: "central tendon" EXACT [FMA:58279] synonym: "centrum tendineum" EXACT [FMA:58279] synonym: "centrum tendineum diaphragmatis" EXACT LATIN [FMA:58279, FMA:TA] xref: EMAPA:17702 xref: FMA:58279 xref: NCIT:C34119 xref: SCTID:244943002 xref: UMLS:C0230162 {source="ncithesaurus:Central_Tendon_of_the_Diaphragm"} xref: VHOG:0001399 xref: Wikipedia:Central_tendon_of_diaphragm is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001103 {source="VHOG"} ! diaphragm property_value: UBPROP:0000003 "In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001399", ontology="VHOG", source="DOI:10.1016/j.resp.2006.06.003", source="http://bgee.unil.ch/"} [Term] id: UBERON:0006679 name: carina of trachea namespace: uberon def: "A cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea." [Wikipedia:Carina_of_trachea] synonym: "bifurcation of the trachea" RELATED [Wikipedia:Carina_of_trachea] synonym: "carina" BROAD [FMA:7465] synonym: "carina (anatomy)" RELATED [Wikipedia:Carina_of_trachea] synonym: "carina of trachea" RELATED [Wikipedia:Carina_of_trachea] synonym: "carina tracheae" EXACT [EMAPA:18407] synonym: "carina tracheae" RELATED LATIN [Wikipedia:Carina_of_trachea] synonym: "tracheal carina" EXACT [FMA:7465] xref: EMAPA:18407 xref: FMA:7465 xref: NCIT:C25264 xref: SCTID:181214003 xref: UMLS:C0225594 {source="ncithesaurus:Carina"} xref: Wikipedia:Carina_of_trachea is_a: UBERON:0003604 ! trachea cartilage relationship: part_of UBERON:0003126 ! trachea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f2/Diagrama_de_los_pulmones-c.svg xsd:anyURI [Term] id: UBERON:0006680 name: trachealis namespace: uberon def: "A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]." [Wikipedia:Trachealis_muscle] synonym: "tracheal muscle" EXACT [FMA:7466] synonym: "trachealis muscle" EXACT [FMA:7466] xref: EMAPA:19193 xref: FMA:7466 xref: SCTID:197333002 xref: Wikipedia:Trachealis_muscle is_a: UBERON:0003387 ! smooth muscle of trachea relationship: part_of UBERON:0003387 ! smooth muscle of trachea [Term] id: UBERON:0006685 name: pharyngeal tubercle namespace: uberon def: "On the lower surface of the basilar part of occipital bone, about 1 cm. in front of the foramen magnum, is the pharyngeal tubercle which gives attachment to the fibrous raphC) of the pharynx, also known as the pharyngeal raphe. This is the point of attachment for the superior pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_tubercle] xref: EMAPA:19250 xref: FMA:75746 xref: Wikipedia:Pharyngeal_tubercle relationship: part_of UBERON:0001042 {source="EMAPA"} ! chordate pharynx [Term] id: UBERON:0006832 name: lumen of open tracheal system trachea namespace: uberon def: "An anatomical space that surrounded_by a open tracheal system trachea." [OBOL:automatic] synonym: "tracheal lumen" BROAD SENSU [FBbt:00007410] xref: FBbt:00007410 relationship: part_of UBERON:0003127 ! open tracheal system trachea [Term] id: UBERON:0006833 name: lumen of trachea namespace: uberon def: "An anatomical space that surrounded_by a trachea." [OBOL:automatic] synonym: "lumen of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "tracheal lumen" EXACT [FMA:7469] xref: FMA:7469 xref: SCTID:197486000 relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0007145 name: dome of diaphragm namespace: uberon synonym: "diaphragm dome" EXACT [FMA:13332] xref: EMAPA:18046 xref: FMA:13332 xref: SCTID:244940004 xref: VHOG:0000933 relationship: part_of UBERON:0001103 ! diaphragm property_value: UBPROP:0000003 "In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000933", ontology="VHOG", source="DOI:10.1016/j.resp.2006.06.003 Brainerd EL, Owerkowicz T, Functional morphology and evolution of aspiration breathing in tetrapods. Respiratory physiology and neurobiology (2006)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0007161 name: medial arcuate ligament namespace: uberon def: "The medial arcuate ligament (also medial lumbocostal arch) is tendinous fascia that arches over the psoas major muscle as it passes through the diaphragm." [Wikipedia:Medial_arcuate_ligament] synonym: "internal arcuate ligament" RELATED [Wikipedia:Medial_arcuate_ligament] synonym: "medial lumbocostal arch" RELATED [Wikipedia:Medial_arcuate_ligament] synonym: "medial lumbocostal arches" RELATED [Wikipedia:Medial_arcuate_ligament] xref: EMAPA:19237 xref: FMA:58282 xref: Wikipedia:Medial_arcuate_ligament is_a: UBERON:0015214 ! arcuate ligament [Term] id: UBERON:0007162 name: lateral arcuate ligament namespace: uberon def: "The lateral arcuate ligament (also lateral lumbocostal arch) is a ligament under the diaphragm that arches across the upper part of the quadratus lumborum. It is traversed by the subcostal nerve, artery and vein." [Wikipedia:Lateral_arcuate_ligament] synonym: "external arcuate ligament" RELATED [Wikipedia:Lateral_arcuate_ligament] synonym: "lateral lumbocostal arch" RELATED [Wikipedia:Lateral_arcuate_ligament] xref: EMAPA:19238 xref: FMA:58283 xref: Wikipedia:Lateral_arcuate_ligament is_a: UBERON:0015214 ! arcuate ligament [Term] id: UBERON:0007166 name: left dome of diaphragm namespace: uberon synonym: "left dome of diaphragm viewed radiologically" EXACT [FMA:13334] xref: EMAPA:25047 xref: FMA:13334 xref: SCTID:244941000 is_a: UBERON:0007145 ! dome of diaphragm [Term] id: UBERON:0007167 name: right dome of diaphragm namespace: uberon synonym: "right dome of diaphragm viewed radiologically" EXACT [FMA:13333] xref: EMAPA:25048 xref: FMA:13333 xref: SCTID:244942007 is_a: UBERON:0007145 ! dome of diaphragm [Term] id: UBERON:0007196 name: tracheobronchial tree namespace: uberon alt_id: UBERON:0004102 def: "The structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells." [Wikipedia:Tracheobronchial_tree] subset: organ_slim subset: pheno_slim synonym: "arbor tracheobronchialis" EXACT LATIN [FMA:7393, FMA:TA] synonym: "tracheobronchial system" RELATED [HP:0005607] xref: FMA:7393 xref: NCIT:C117875 xref: SCTID:361384001 xref: Wikipedia:Tracheobronchial_tree relationship: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0007250 name: lingual tonsil namespace: uberon def: "the lymph tissue on the floor of the oropharyngeal passage, near the root of the tongue" [MGI:cwg, MP:0002385] subset: pheno_slim synonym: "lingual tonsillar tissue" EXACT [MA:0000773] synonym: "tonsilla lingualis" RELATED LATIN [Wikipedia:Lingual_tonsils] xref: FMA:54836 xref: MA:0000773 xref: NCIT:C32988 xref: SCTID:276957006 xref: UMLS:C0229871 {source="ncithesaurus:Lingual_Tonsil"} xref: Wikipedia:Lingual_tonsils is_a: UBERON:0002372 ! tonsil property_value: depicted:by Illu04:tongue.jpg xsd:anyURI [Term] id: UBERON:0007267 name: trachea pre-cartilage rings namespace: uberon def: "A pre-cartilage condensation that is part of a trachea." [OBOL:automatic] xref: EHDAA2:0002070 xref: EHDAA:7082 is_a: UBERON:0009505 ! mesenchyme of trachea relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0007303 name: pharyngeal vasculature namespace: uberon def: "A vasculature that is part of a chordate pharynx." [OBOL:automatic] synonym: "branchial vasculature" EXACT [ZFA:0005003] xref: TAO:0005003 xref: ZFA:0005003 relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0007311 name: sputum namespace: uberon def: "Matter ejected from the lungs, bronchi, and trachea, through the mouth." [Dorlands_Medical_Dictionary:MerckSource] synonym: "expectoration" RELATED [BTO:0001297] xref: BTO:0001297 xref: CALOHA:TS-0963 xref: EMAPA:36553 xref: FMA:312401 xref: GAID:1171 xref: MA:0002536 xref: MESH:D013183 xref: NCIT:C13278 xref: UMLS:C0038056 {source="ncithesaurus:Sputum"} relationship: part_of UBERON:0006524 ! alveolar system [Term] id: UBERON:0007689 name: thyroid diverticulum namespace: uberon def: "endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]." [MP:0004662, Wikipedia:Thyroid_diverticulum] synonym: "diverticulum thyroideum" RELATED LATIN [Wikipedia:Thyroid_diverticulum] synonym: "saccus thyroideus" RELATED LATIN [Wikipedia:Thyroid_diverticulum] xref: Wikipedia:Thyroid_diverticulum relationship: part_of UBERON:0001042 {source="VHOG"} ! chordate pharynx [Term] id: UBERON:0008310 name: nasopharyngeal gland namespace: uberon def: "A gland that is part of a nasopharynx." [OBOL:automatic] subset: organ_slim xref: FMA:55076 xref: SCTID:178973008 is_a: UBERON:0003295 ! pharyngeal gland relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0008397 name: tracheobronchial epithelium namespace: uberon def: "Epithelium pertaining to the trachea and bronchi." [Dorlands_Medical_Dictionary:MerckMedicus] synonym: "bronchotracheal epithelium" RELATED [BTO:0002925] xref: BTO:0002925 xref: CALOHA:TS-1063 is_a: UBERON:0004815 ! lower respiratory tract epithelium relationship: part_of UBERON:0007196 ! tracheobronchial tree [Term] id: UBERON:0008572 name: posterior crico-arytenoid namespace: uberon def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoarytaenoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "cricoarytænoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "musculus cricoarytenoideus posterior" RELATED LATIN [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoid" EXACT [FMA:46576] synonym: "posterior cricoarytenoid muscle" EXACT [Wikipedia:Posterior_cricoarytenoid_muscle] synonym: "posterior cricoarytenoideus" EXACT [FMA:46576] xref: FMA:46576 xref: SCTID:244812005 xref: Wikipedia:Posterior_cricoarytenoid_muscle is_a: UBERON:0010932 ! crico-arytenoid muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9d/Musculuscricoarytenoideusposterior.png xsd:anyURI [Term] id: UBERON:0008573 name: lateral crico-arytenoid namespace: uberon def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytaenoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytænoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "cricoarytænoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoid" EXACT [FMA:46579] synonym: "lateral cricoarytenoid muscle" EXACT [Wikipedia:Lateral_cricoarytenoid_muscle] synonym: "lateral cricoarytenoideus" EXACT [FMA:46579] synonym: "musculus cricoarytenoideus lateralis" RELATED LATIN [Wikipedia:Lateral_cricoarytenoid_muscle] xref: FMA:46579 xref: SCTID:244813000 xref: Wikipedia:Lateral_cricoarytenoid_muscle is_a: UBERON:0010932 ! crico-arytenoid muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/34/Musculuscricoarytenoideuslateralis.png xsd:anyURI [Term] id: UBERON:0008574 name: transverse arytenoid namespace: uberon def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [Wikipedia:Arytenoid_muscle] synonym: "arytenoid transversus" RELATED [] synonym: "tranverse arytenoid muscle" RELATED [Wikipedia:Transverse_arytenoid] xref: FMA:46582 xref: Wikipedia:Arytenoid_muscle is_a: UBERON:0010958 ! arytenoid muscle [Term] id: UBERON:0008575 name: oblique arytenoid namespace: uberon def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [Wikipedia:Oblique_arytenoid_muscle] synonym: "arytenoid obliquus" RELATED [] synonym: "oblique arytenoid muscle" RELATED [Wikipedia:Oblique_arytenoid] xref: FMA:46583 xref: SCTID:244817004 xref: Wikipedia:Oblique_arytenoid_muscle is_a: UBERON:0010958 ! arytenoid muscle [Term] id: UBERON:0008576 name: thyro-arytenoid namespace: uberon def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [Wikipedia:Thyroarytenoid_muscle] synonym: "musculus thyroarytenoideus" RELATED LATIN [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytaenoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytænoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoarytænoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyreoepiglotticus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid %26 vocalis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyro-arytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid" EXACT [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "thyroarytænoideus" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis" RELATED [Wikipedia:Thyroarytenoid_muscle] synonym: "ventricularis muscle" RELATED [Wikipedia:Thyroarytenoid_muscle] xref: FMA:46588 xref: NCIT:C33776 xref: SCTID:361814004 xref: UMLS:C0224183 {source="ncithesaurus:Thyroarytenoid_Muscle"} xref: Wikipedia:Thyroarytenoid_muscle is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png xsd:anyURI [Term] id: UBERON:0008577 name: vocalis muscle namespace: uberon def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [Wikipedia:Vocal_muscle] synonym: "musculus vocalis" RELATED LATIN [Wikipedia:Vocal_muscle] synonym: "vocal muscle" EXACT [FMA:46591] synonym: "vocalis" EXACT [] xref: FMA:46591 xref: NCIT:C33886 xref: SCTID:244820007 xref: UMLS:C0224181 {source="ncithesaurus:Vocalis_Muscle"} xref: Wikipedia:Vocal_muscle is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx relationship: part_of UBERON:0008576 {source="FEED:rd", source="Wikipedia"} ! thyro-arytenoid property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png xsd:anyURI property_value: UBPROP:0000012 "in FMA this is not placed under thyro-arytenoid but almost all sources consider this to be the case (confirmed with FEED:rd)" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0008804 name: stylopharyngeus muscle namespace: uberon def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle] synonym: "M. stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "musculus stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle] synonym: "musculus stylopharyngeus" RELATED LATIN [Wikipedia:Stylopharyngeus_muscle] synonym: "stylopharyngeus" EXACT [Wikipedia:Stylopharyngeus_muscle] xref: FMA:46664 xref: NCIT:C33639 xref: SCTID:244806000 xref: UMLS:C1522014 {source="ncithesaurus:Stylopharyngeus"} xref: Wikipedia:Stylopharyngeus_muscle is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/59/Musculusstylopharyngeus.png xsd:anyURI property_value: UBPROP:0000001 "The stylopharyngeus is a pharyngeal arch III muscle that participates in oral/pharyngeal behaviors and is innervated by the n. to stylopharyngeus branch of the glossopharyngeal n. and attaches to the hyoid apparatus and the pharynx.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0008815 name: pharyngeal slit namespace: uberon def: "An organ formed from the perforation between the point of contact between ectoderm and endoderm in the pharynx. The slits assist in filtering food particles from the water." [http://orcid.org/0000-0002-6601-2165, PMID:23020903] subset: organ_slim synonym: "gill slit" RELATED [] synonym: "pharyngeal perforation" RELATED [PMID:23020903] xref: Wikipedia:Pharyngeal_slit relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by 280px-Gill:slits.png xsd:anyURI property_value: IAO:0000116 "requires review. Kardong uses the term pharyngeal slit for Chondrichthyans. 'branchial slit' may also be used for amniote structures." xsd:string property_value: RO:0002161 NCBITaxon:7742 property_value: UBPROP:0000008 "homologous to pharyngeal pouches" xsd:string property_value: UBPROP:0000008 "may have been present in deuterostome ancestor[PMID:11961109]" xsd:string property_value: UBPROP:0000008 "Some hemichordate species can have as many as 200 gill slits" xsd:string [Term] id: UBERON:0008817 name: thymus primordium endoderm namespace: uberon def: "An endoderm that is part of a thymus primordium." [OBOL:automatic] relationship: part_of UBERON:0005562 ! thymus primordium [Term] id: UBERON:0008870 name: pulmonary alveolar parenchyma namespace: uberon def: "The distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages" [MP:0010901] subset: pheno_slim xref: EMAPA:37942 {source="MA:th"} is_a: UBERON:0008946 ! lung parenchyma relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008873 name: alveolar pore namespace: uberon def: "The openings in the alveolar septum that permit air flow between adjacent alveoli" [MP:0010904] subset: pheno_slim xref: EMAPA:37391 {source="MA:th"} relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008874 name: pulmonary acinus namespace: uberon def: "The part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs] subset: pheno_slim synonym: "acinus pulmonaris" EXACT LATIN [FMA:7313, FMA:TA] synonym: "arbor alveolaris" EXACT LATIN [FMA:7313, FMA:TA] synonym: "lobulus pulmonis primarius" EXACT LATIN [FMA:7313, FMA:TA] synonym: "primary pulmonary lobule" EXACT [FMA:7313] synonym: "respiratory lobule" EXACT [] xref: EMAPA:37941 {source="MA:th"} xref: FMA:7313 xref: NCIT:C33426 xref: SCTID:361365004 xref: UMLS:C0225696 {source="ncithesaurus:Pulmonary_Acinus"} xref: Wikipedia:Acinus#The_Lungs is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule [Term] id: UBERON:0008891 name: external gill namespace: uberon def: "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes[BTO]." [BTO:0004689, Wikipedia:External_gills] xref: AAO:0010174 xref: BTO:0004689 xref: Wikipedia:External_gills xref: XAO:0000120 is_a: UBERON:0002535 {source="BTO"} ! gill property_value: UBPROP:0000001 "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes. Instead, the respiratory organs are set on a frill of stalks protruding from the sides of an animals head. This type of gill is most commonly observed on the aquatic larva of most species of salamanders, lungfish, and bichirs (which have only one large pair), and are retained by neotenic adult salamanders and some species of adult lungfish. They are present on non-transforming salamander species such as the mudpuppy, as well as most members of the Proteidae and Sirenidae families, which naturally never metamorphose into an air-breathing form. The embryos of frogs and caecilians also develop external gills at some point in their development, though these are either resorbed before or disappear shortly after hatching. Fossils of the distant relatives of modern amphibians, such as Branchiosaurus and Apateon, also show evidence of external gills. The external gills commonly consist of a single stalk (rami) protruding from a gill arch behind the head of the animal, above an associated gill slit. The stalk usually contains muscle tissue, and may be moved by the animal as a free appendage, in order to stir up stagnant water. The stalk is lined by many thinly walled filaments (fimbriae), containing the majority of blood vessels used in gas exchange. Animals usually have one external gill originating on each gill arch (except the hyoid), which leads to there being three pairs of external gills in salamanders, and four in the gilled larvae of lungfish[Wikipedia:External_gills]." xsd:string {source="Wikipedia:External_gills"} [Term] id: UBERON:0008892 name: internal gill namespace: uberon xref: AAO:0010176 is_a: UBERON:0002535 {source="AAO"} ! gill [Term] id: UBERON:0008946 name: lung parenchyma namespace: uberon def: "A parenchyma that is part of a lung." [OBOL:automatic] synonym: "parenchyma of lung" RELATED [BTO:0000763] synonym: "pulmonary parenchyma" RELATED [EMAPA:35522] synonym: "respiratory portion of lung" EXACT [FMA:27360] xref: EMAPA:35522 xref: FMA:27360 xref: MA:0003168 xref: SCTID:201712001 relationship: part_of UBERON:0002048 {source="FMA"} ! lung [Term] id: UBERON:0008948 name: upper lobe of lung namespace: uberon def: "A lobe of the lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] synonym: "cranial lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus superior" EXACT [FMA:7334] synonym: "lobus superior pulmonis" EXACT LATIN [FMA:TA] synonym: "superior lobe of lung" EXACT [FMA:7334] xref: FMA:7334 xref: galen:UpperLobeOfLung xref: NCIT:C12285 xref: SCTID:303548008 xref: UMLS:C0225756 {source="ncithesaurus:Lung_Upper_Lobe"} is_a: UBERON:0000101 ! lobe of lung property_value: IAO:0000116 "the logical definition must have a clause stating position relative to a lower lobe, otherwise a single lobed side (such as the left lobe in the mouse) trivially classifies as an upper lobe" xsd:string [Term] id: UBERON:0008949 name: lower lobe of lung namespace: uberon def: "The bottom most subdivision of either the right or left lung." [ncithesaurus:Lung_Lower_Lobe] synonym: "inferior lobe of lung" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus inferior" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "lobus inferior pulmonis" EXACT [https://orcid.org/0000-0002-6601-2165] xref: FMA:7335 xref: galen:LowerLobeOfLung xref: NCIT:C12287 xref: SCTID:303549000 xref: UMLS:C0225758 {source="ncithesaurus:Lung_Lower_Lobe"} is_a: UBERON:0000101 ! lobe of lung property_value: IAO:0000116 "defining lobes spatially across species" xsd:string [Term] id: UBERON:0008950 name: azygous lobe of lung namespace: uberon def: "The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure." [http://www.e-radiography.net/radpath/a/azygoslobe.htm, http://www.gpnotebook.co.uk] is_a: UBERON:0004890 ! right lung accessory lobe [Term] id: UBERON:0008951 name: left lung lobe namespace: uberon def: "A lobe of lung that is part of a left lung." [OBOL:automatic] synonym: "lobe of left lung" EXACT [] synonym: "lobe of the left lung" EXACT [] xref: EHDAA:2981 xref: NCIT:C48945 xref: SCTID:272655003 xref: UMLS:C1285107 {source="ncithesaurus:Lobe_of_the_Left_Lung"} is_a: UBERON:0000101 ! lobe of lung relationship: part_of UBERON:0002168 ! left lung property_value: UBPROP:0000008 "1 in mice, divided into 2 in human by a single interlobar fissure, the oblqiue fissure" xsd:string {source="ISBN:0123813611"} [Term] id: UBERON:0008952 name: upper lobe of left lung namespace: uberon def: "The lobe of the left lung that is closest to the head." [https://orcid.org/0000-0002-6601-2165] synonym: "left lung cranial lobe" EXACT [EHDAA2:0000953] synonym: "left upper lobe" EXACT [FMA:7370] synonym: "left upper lobe of lung" EXACT [FMA:7370] synonym: "lobus superior (pulmo sinister)" EXACT LATIN [FMA:7370, FMA:TA] synonym: "lobus superior pulmonis sinistri" EXACT LATIN [FMA:TA] synonym: "superior lobe of left lung" EXACT [FMA:7370] xref: EHDAA2:0000953 xref: EHDAA:4957 xref: FMA:7370 xref: galen:UpperLobeOfLeftLung xref: NCIT:C33021 xref: SCTID:361984006 xref: UMLS:C1261076 {source="ncithesaurus:Upper_Lobe_of_the_Left_Lung"} is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung is_a: UBERON:0008951 ! left lung lobe relationship: part_of UBERON:0002168 ! left lung property_value: RO:0002161 NCBITaxon:10088 {source="ISBN:0123813611"} [Term] id: UBERON:0008953 name: lower lobe of left lung namespace: uberon def: "A lower lobe of lung that is part of a left lung." [OBOL:automatic] synonym: "inferior lobe of left lung" EXACT [FMA:7371] synonym: "left lower lobe" EXACT [FMA:7371] synonym: "left lower lobe of lung" EXACT [FMA:7371] synonym: "left lung caudal lobe" EXACT [EHDAA2:0000945] synonym: "lobus inferior (pulmo sinister)" EXACT [FMA:7371] synonym: "lobus inferior pulmonis sinistri" EXACT LATIN [FMA:TA] xref: EHDAA2:0000945 xref: EHDAA:4949 xref: FMA:7371 xref: galen:LowerLobeOfLeftLung xref: NCIT:C33020 xref: SCTID:361989001 xref: UMLS:C1261077 {source="ncithesaurus:Lower_Lobe_of_the_Left_Lung"} is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung is_a: UBERON:0008951 ! left lung lobe relationship: part_of UBERON:0002168 ! left lung property_value: RO:0002161 NCBITaxon:10088 {source="ISBN:0123813611"} [Term] id: UBERON:0008954 name: lingula of left lung namespace: uberon def: "Anterioinferior portion of left upper lung lobe" [ISBN:0123813611, Wikipedia:Lingula_of_left_lung] synonym: "left pulmonary lingula" EXACT [FMA:7433] synonym: "lingula of lung" EXACT [FMA:7433] synonym: "lingula of the lung" EXACT [] synonym: "middle lobe of left lung" RELATED [galen:MiddleLobeOfLeftLung] xref: FMA:7433 xref: galen:MiddleLobeOfLeftLung xref: NCIT:C40373 xref: SCTID:184916009 xref: UMLS:C0225740 {source="ncithesaurus:Lingula"} xref: Wikipedia:Lingula_of_left_lung relationship: part_of UBERON:0008952 {source="ISBN:0123813611"} ! upper lobe of left lung property_value: RO:0002161 NCBITaxon:10088 {source="ISBN:0123813611"} property_value: UBPROP:0000008 "the lingula of the left lung in humans is not normally considered a true lobe" xsd:string {seeAlso="https://github.com/obophenotype/uberon/issues/79"} property_value: UBPROP:0000012 "in Galen, it is a middle lobe" xsd:string [Term] id: UBERON:0008955 name: middle lobe of lung namespace: uberon def: "A lobe of the lung that is situated somewhere between an upper lobe and lower lobe." [https://orcid.org/0000-0002-6601-2165] synonym: "lung middle lobe" EXACT [] xref: galen:MiddleLobeOfLung xref: SCTID:362900002 is_a: UBERON:0000101 ! lobe of lung property_value: UBPROP:0000008 "mice have 4 right lobes (5 in some schemes), humans have 2, and thus no middle lobe (the lingula is not a lobe)" xsd:string [Term] id: UBERON:0008961 name: parabronchus namespace: uberon def: "tertiary bronchus in the avian lung." [http://medical-dictionary.thefreedictionary.com/parabronchi] synonym: "neopulmonic parabronchus" NARROW [] synonym: "paleopulmonic parabronchus" NARROW [] synonym: "parabronchi" RELATED PLURAL [] is_a: UBERON:0002184 {notes="tertiary", source="ISBN:0073040584"} ! segmental bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009058 name: faveolus namespace: uberon def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [PMID:12869615] comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] synonym: "edicula" RELATED SENSU [PMID:12625309] synonym: "faveoli" RELATED PLURAL [] synonym: "lung faveolus" EXACT [] relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009060 name: air sac namespace: uberon def: "Any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs" [http://www.thefreedictionary.com/air+sac, Wikipedia:Bird_anatomy#Respiratory_system] comment: Three distinct sets of organs perform respiration-the anterior air sacs (interclavicular, cervicals, and anterior thoracics), the lungs, and the posterior air sacs (posterior thoracics and abdominals). The posterior and anterior air sacs, typically nine, expand during inhalation. Air enters the bird via the trachea. Half of the inhaled air enters the posterior air sacs, the other half passes through the lungs and into the anterior air sacs. Air from the anterior air sacs empties directly into the trachea and out the bird's mouth or nares. The posterior air sacs empty their air into the lungs. Air passing through the lungs as the bird exhales is expelled via the trachea. Some taxonomic groups (Passeriformes) possess 7 air sacs, as the clavicular air sacs may interconnect or be fused with the cranial thoracic air sacs[WP] synonym: "psotcranial air sac" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "sacci pneumatici" EXACT LATIN [] xref: MESH:D000400 xref: NCIT:C120926 xref: SCTID:49081009 xref: Wikipedia:Bird_anatomy#Respiratory_system relationship: part_of UBERON:0001004 ! respiratory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f2/BirdRespiration.svg xsd:anyURI [Term] id: UBERON:0009061 name: anterior air sac namespace: uberon comment: interclavicular, cervicals, & anterior thoracics subset: grouping_class synonym: "cranial air sac" RELATED [] is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009062 name: posterior air sac namespace: uberon comment: Half of the inhaled air enters the posterior air sacs. The posterior air sacs empty their air into the lungs. // posterior thoracics & abdominals subset: grouping_class synonym: "caudal air sac" RELATED [] is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009063 name: interclavicular air sac namespace: uberon comment: Unapaired[Kardong] is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009064 name: cervical air sac namespace: uberon xref: SCTID:62426003 is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009065 name: anterior thoracic air sac namespace: uberon synonym: "cranial thoracic air sac" RELATED [] synonym: "cranial thoracic sac" RELATED [] xref: SCTID:17911004 is_a: UBERON:0009061 ! anterior air sac [Term] id: UBERON:0009066 name: posterior thoracic air sac namespace: uberon synonym: "caudal thoracic air sac" RELATED [] synonym: "caudal thoracic sac" RELATED [] xref: SCTID:10576005 is_a: UBERON:0009062 ! posterior air sac [Term] id: UBERON:0009067 name: abdominal air sac namespace: uberon xref: SCTID:43701009 is_a: UBERON:0009062 ! posterior air sac [Term] id: UBERON:0009071 name: mesobronchus namespace: uberon subset: organ_slim synonym: "mesobronchi" RELATED PLURAL [] is_a: UBERON:0002182 {source="ISBN:0073040584"} ! main bronchus is_a: UBERON:0035767 ! intrapulmonary bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009072 name: ventrobronchus namespace: uberon subset: organ_slim synonym: "ventrobronchi" RELATED PLURAL [] is_a: UBERON:0035767 ! intrapulmonary bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009073 name: dorsobronchus namespace: uberon synonym: "dorsobronchi" RELATED PLURAL [] is_a: UBERON:0002183 {notes="secondary"} ! lobar bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009074 name: syrinx organ namespace: uberon def: "vocal organ of birds, located at the base of a trachea" [Wikipedia:Syrinx_(bird_anatomy)] subset: organ_slim synonym: "avian vocal organ" RELATED [] synonym: "syrinx" RELATED [] xref: NCIT:C111323 xref: Wikipedia:Syrinx_(bird_anatomy) relationship: part_of UBERON:0003126 ! trachea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/87/Syrinx.jpg xsd:anyURI [Term] id: UBERON:0009075 name: membrana tympaniformis namespace: uberon def: "A anatomical wall that is part of a syrinx organ." [OBOL:automatic] synonym: "syrinx organ wall" EXACT [] synonym: "wall of syrinx" EXACT [Wikipedia:Syrinx_(bird_anatomy)] relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009076 name: membrana tympaniformis lateralis namespace: uberon synonym: "lateral wall of syrinx" EXACT [] is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009077 name: membrana tympaniformis medialis namespace: uberon synonym: "medial wall of syrinx" EXACT [] is_a: UBERON:0009075 ! membrana tympaniformis [Term] id: UBERON:0009078 name: pessulus namespace: uberon def: "A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds" [http://www.encyclo.co.uk/webster/P/64] is_a: UBERON:0003604 ! trachea cartilage relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009116 name: thymoid namespace: uberon def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [PMID:21293377] comment: Genes: FOXN1 subset: organ_slim is_a: UBERON:0003295 ! pharyngeal gland relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0009119 name: branchial basket namespace: uberon def: "The network-like non-segmented cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali, connected to the heart and surrounding respiratory tissue." [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm, UBERON:cjm] subset: cyclostome_subset synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg xsd:anyURI property_value: IAO:0000116 "developmental relationship needs to be changed if the scope is broadened, as NC is vertebrate-specific" xsd:string property_value: RO:0002161 NCBITaxon:117570 property_value: UBPROP:0000008 "May also be present in amphioxus" xsd:string property_value: UBPROP:0000009 "functions by elastic recoil" xsd:string [Term] id: UBERON:0009120 name: gill filament namespace: uberon def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [http://www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-961014-576] subset: efo_slim synonym: "gill filaments" EXACT PLURAL [ZFA:0000667] xref: BTO:0002150 xref: EFO:0003554 xref: TAO:0000667 xref: ZFA:0000667 relationship: part_of UBERON:0002535 {source="ZFA"} ! gill property_value: UBPROP:0000001 "Branched region of the gill where respiratory exchange takes place. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000667", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0009504 name: mesenchyme of main bronchus namespace: uberon def: "Mesenchyme that is part of a developing main bronchus." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "main bronchus associated mesenchyme" EXACT [EHDAA2:0001045] synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] xref: EHDAA2:0001045 xref: EMAPA:16850 relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0009505 name: mesenchyme of trachea namespace: uberon def: "Mesenchyme that is part of a developing trachea." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "trachea associated mesenchyme" EXACT [EHDAA2:0002067] xref: EHDAA2:0002067 xref: EMAPA:16854 relationship: part_of UBERON:0003126 ! trachea [Term] id: UBERON:0009536 name: vascular element of left lung namespace: uberon def: "A vascular plexus that is part of a left lung." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000963 xref: EMAPA:17660 is_a: UBERON:0000102 ! lung vasculature relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0009537 name: vascular element of right lung namespace: uberon def: "A vascular plexus that is part of a right lung." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0001757 xref: EMAPA:17668 is_a: UBERON:0000102 ! lung vasculature relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0009602 name: left lung associated mesenchyme namespace: uberon def: "Mesenchyme that is part of a developing left lung." [OBOL:automatic] synonym: "left lung mesenchyme" EXACT [EMAPA:17654] xref: EHDAA2:0000944 xref: EMAPA:16730 xref: EMAPA:17654 is_a: UBERON:0004883 ! lung mesenchyme relationship: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0009603 name: right lung associated mesenchyme namespace: uberon def: "Mesenchyme that is part of a developing right lung." [OBOL:automatic] synonym: "right lung mesenchyme" EXACT [EMAPA:17662] xref: EHDAA2:0001739 xref: EMAPA:17662 is_a: UBERON:0004883 ! lung mesenchyme relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0009644 name: trachea non-cartilage connective tissue namespace: uberon xref: EMAPA:35878 xref: MA:0001859 is_a: UBERON:0003571 {source="MA"} ! trachea connective tissue [Term] id: UBERON:0009652 name: bronchus basement membrane namespace: uberon def: "A basement membrane that is part of a bronchus." [OBOL:automatic] synonym: "bronchial basement membrane" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37809 {source="MA:th"} xref: MA:0001832 xref: NCIT:C49208 xref: UMLS:C1707051 {source="ncithesaurus:Bronchus_Basement_Membrane"} is_a: UBERON:0015329 ! respiratory system basement membrane relationship: part_of UBERON:0002031 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of bronchus relationship: part_of UBERON:0002185 ! bronchus property_value: UBPROP:0000012 "MA classifies as type of connective tissue: https://github.com/obophenotype/mouse-anatomy-ontology/issues/108" xsd:string {external_ontology="MA"} [Term] id: UBERON:0009653 name: trachea basement membrane namespace: uberon def: "A basement membrane that is part of a trachea." [OBOL:automatic] xref: EMAPA:37552 {source="MA:th"} xref: MA:0001854 xref: NCIT:C49302 xref: UMLS:C1710455 {source="ncithesaurus:Trachea_Basement_Membrane"} is_a: UBERON:0015329 ! respiratory system basement membrane relationship: part_of UBERON:0001901 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! epithelium of trachea relationship: part_of UBERON:0003126 ! trachea relationship: part_of UBERON:0009644 {source="MA-modified"} ! trachea non-cartilage connective tissue [Term] id: UBERON:0009671 name: nasal fin namespace: uberon def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308] xref: EHDAA2:0004548 xref: FMA:295940 is_a: UBERON:0005384 ! nasal cavity epithelium relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium [Term] id: UBERON:0009672 name: oronasal membrane namespace: uberon def: "The oronasal membrane separates the oral cavity and nasal cavity." [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] synonym: "bucconasal membrane" EXACT [EHDAA:7840] xref: EHDAA2:0000188 xref: EHDAA:7840 xref: EHDAA:7984 xref: FMA:295942 relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium property_value: IAO:0000116 "split into two?" xsd:string property_value: UBPROP:0000008 "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" xsd:string [Term] id: UBERON:0009695 name: epithelium of laryngopharynx namespace: uberon def: "A epithelium that is part of a hypopharynx." [OBOL:automatic] synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454] synonym: "laryngopharynx epithelium" EXACT [FMA:62454] xref: EHDAA2:0004575 xref: FMA:62454 is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0001051 {source="EHDAA2"} ! hypopharynx [Term] id: UBERON:0009778 name: pleural sac namespace: uberon def: "A serous sac that has the pleura and the pleural cavity as parts." [https://github.com/obophenotype/uberon/issues/86] subset: non_informative xref: EHDAA2:0004737 xref: FMA:9690 xref: SCTID:361996004 relationship: part_of UBERON:0001558 {source="FMA"} ! lower respiratory tract property_value: UBPROP:0000012 "despite its name the class EHDAA2:0004737 is not a true cavity, it corresponds to what we call the sac" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0009867 name: Hatschek's diverticulum namespace: uberon relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0009868 name: Hatschek's left diverticulum namespace: uberon def: "A Hatschek's diverticulum that is in the left side of a multicellular organism." [OBOL:automatic] is_a: UBERON:0009867 ! Hatschek's diverticulum property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0009869 name: Hatschek's right diverticulum namespace: uberon def: "A Hatschek's diverticulum that is in the right side of a multicellular organism." [OBOL:automatic] is_a: UBERON:0009867 ! Hatschek's diverticulum property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0009948 name: clavicular air sac namespace: uberon xref: SCTID:2574004 is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009959 name: lumen of oropharynx namespace: uberon def: "A anatomical space that is enclosed by a oropharynx." [OBOL:automatic] synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556] synonym: "oropharynx lumen" EXACT [FMA:55095] xref: EHDAA2:0004556 xref: FMA:55095 relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0010002 name: pulmonary neuroendocrine body namespace: uberon def: "corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors." [MP:0010921] subset: pheno_slim synonym: "NEB" EXACT [MP:0010921] synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921] xref: EMAPA:37943 {source="MA:th"} is_a: UBERON:0000061 {source="MP"} ! anatomical structure relationship: part_of UBERON:0000115 ! lung epithelium [Term] id: UBERON:0010019 name: spiracle (sensu Vertebrata) namespace: uberon def: "A small hole behind each eye that opens to the mouth in some fish. In the primitive jawless fish the first gill opening immediately behind the mouth is essentially similar to the other gill openings." [ISBN:0073040584, Wikipedia:Spiracle#Vertebrates] synonym: "spiracle" BROAD SENSU [NCBITaxon:7742] synonym: "vertebrate spiracle" EXACT [] xref: Wikipedia:Spiracle#Vertebrates relationship: part_of UBERON:0001004 ! respiratory system property_value: RO:0002161 NCBITaxon:32523 property_value: RO:0002175 NCBITaxon:119203 property_value: UBPROP:0000008 "In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups." xsd:string property_value: UBPROP:0000008 "The spiracle is still found in all cartilaginous fish except chimaeras, and in bony fishes in the coelacanth, sturgeon, paddlefish and bichirs. It is also seen as an otic notch in the skull of the extinct labyrinthodonts, and is thought to be associated with the ear opening in amniotes and frogs" xsd:string {source="WP"} property_value: UBPROP:0000012 "GO term spiracle morphogenesis, open tracheal system - does not refer to this structure" xsd:string {isAbout="GO:0035277"} [Term] id: UBERON:0010060 name: pharyngeal opening of pharyngotympanic tube namespace: uberon def: "On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "ostium pharyngeum tubae auditivae" EXACT LATIN [FMA:TA] synonym: "ostium pharyngeum tubae auditivae" RELATED LATIN [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "ostium pharyngeum tubae auditoriae" EXACT LATIN [FMA:TA] synonym: "pharyngeal opening of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal opening of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal orifice of pharyngotympanic tube" EXACT [FMA:54979] synonym: "pharyngeal ostium" RELATED [Wikipedia:Pharyngeal_opening_of_auditory_tube] synonym: "pharyngeal ostium of auditory tube" EXACT [FMA:54979] synonym: "pharyngeal ostium of eustachian tube" EXACT [FMA:54979] synonym: "pharyngeal ostium of pharyngotympanic tube" EXACT [FMA:54979] synonym: "pharyngeal tubal ostium" EXACT [FMA:54979] xref: FMA:54979 xref: SCTID:368945008 xref: Wikipedia:Pharyngeal_opening_of_auditory_tube relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray1029.png xsd:anyURI [Term] id: UBERON:0010061 name: lumen of nasopharynx namespace: uberon synonym: "nasopharyngeal luman" EXACT [] synonym: "nasopharynx cavity" EXACT [] synonym: "nasopharynx lumen" EXACT [FMA:55094] xref: FMA:55094 relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0010212 name: laryngeal apparatus namespace: uberon def: "Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring." [AAO:0000267] synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904] xref: AAO:0000267 xref: EHDAA2:0000904 relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx property_value: IAO:0000116 "check this. See also https://github.com/obophenotype/uberon/wiki/The-axial-skeleton" xsd:string [Term] id: UBERON:0010213 name: laryngeal pre-cartilage condensation namespace: uberon relationship: part_of UBERON:0010212 {source="EHDAA2-abstracted"} ! laryngeal apparatus [Term] id: UBERON:0010214 name: cricoid pre-cartilage condensation namespace: uberon xref: EHDAA2:0000327 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010215 name: arytenoid swellings namespace: uberon def: "paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed" [http://www.medilexicon.com/medicaldictionary.php?t=87317] xref: EHDAA2:0000146 relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus property_value: UBPROP:0000012 "EHDAA2 and EMAPA appear to be inconsistent" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0010219 name: thyroid pre-cartilage condensation namespace: uberon xref: EHDAA2:0004088 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010220 name: arytenoid pre-cartilage condensation namespace: uberon synonym: "arytenoid swelling pre-cartilage condensation" EXACT [EMAPA:17387] xref: EHDAA2:0000144 xref: EMAPA:17387 xref: VHOG:0000998 is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation [Term] id: UBERON:0010221 name: laryngeal associated mesenchyme namespace: uberon comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? xref: EHDAA2:0004085 relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx [Term] id: UBERON:0010234 name: palatopharyngeus muscle namespace: uberon def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [Wikipedia:Palatopharyngeus_muscle] synonym: "musculus palatopharyngeus" RELATED LATIN [Wikipedia:Palatopharyngeus_muscle] synonym: "palatopharyngeal muscle" EXACT [] synonym: "palatopharyngeus" EXACT [FMA:46666] synonym: "pharyngopalatinus" RELATED [Wikipedia:Palatopharyngeus_muscle] synonym: "pharyngopalatinus muscle" EXACT [Wikipedia:Palatopharyngeus_muscle] xref: FMA:46666 xref: SCTID:244796000 xref: Wikipedia:Palatopharyngeus_muscle is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png xsd:anyURI property_value: UBPROP:0000001 "Palatopharyngeus is a muscle that attaches to the palatine bones, soft palate, and pharynx and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: UBPROP:0000010 "It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae" xsd:string [Term] id: UBERON:0010368 name: pulmonary lobule namespace: uberon def: "The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in diameter. Each lobule is composed of 4-8 terminal bronchioles and their distal alveolar ducts and sacs. The lobules are separated by fibrous interlobular septa." [ncithesaurus:Pulmonary_Lobule] synonym: "lobulus pulmonis" EXACT LATIN [FMA:75739, FMA:TA] xref: FMA:75739 xref: NCIT:C33428 relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0010369 name: secondary pulmonary lobule namespace: uberon def: "A unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa." [PMID:3259815] synonym: "lobulus pulmonis secondarius" EXACT LATIN [FMA:7414, FMA:TA] xref: FMA:7414 is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule relationship: part_of UBERON:0008946 {source="FMA"} ! lung parenchyma property_value: UBPROP:0000001 "a pyramidal mass of lung tissue with sides that are bounded by the incomplete interlobular connective tissue septa and with a base, which is 1-2 cm in diameter, which usually faces the pleural surface of the lung; lobules that occupy a more central position in the lung are not well defined and are considered to consist of three to five pulmonary acini with proximate terminal bronchioles." xsd:string {source="http://medical-dictionary.thefreedictionary.com/secondary+pulmonary+lobule"} [Term] id: UBERON:0010384 name: lumen of laryngopharynx namespace: uberon def: "A anatomical space that is enclosed by a hypopharynx." [OBOL:automatic] synonym: "laryngopharynx lumen" EXACT [FMA:55096] xref: FMA:55096 relationship: part_of UBERON:0001051 {source="FMA"} ! hypopharynx [Term] id: UBERON:0010423 name: primary lymphoid nodule of tonsil namespace: uberon def: "A primary nodular lymphoid tissue that is part of a tonsil." [OBOL:automatic] synonym: "lymphoid nodule of tonsil" RELATED [FMA:86018] xref: FMA:86018 relationship: part_of UBERON:0002372 ! tonsil [Term] id: UBERON:0010927 name: thyroepiglotticus muscle namespace: uberon def: "fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx." [http://medical-dictionary.thefreedictionary.com/thyroepiglottic+muscle, Wikipedia:Thyroepiglottic_muscle] synonym: "pars thyroepiglottica (musculus thyroarytenoideus)" EXACT [FMA:46594] synonym: "pars thyroepiglottica musculi thyroarytenoidei" RELATED LATIN [Wikipedia:Thyroepiglottic_muscle] synonym: "pars thyroepiglottica musculus thyroarytenoidei" EXACT LATIN [FMA:TA] synonym: "thyro-epiglottic part of thyro-arytenoid" EXACT [FMA:46594] synonym: "thyroepiglottic" EXACT [] synonym: "thyroepiglottic muscle" EXACT [FMA:46594] synonym: "thyroepiglotticus" EXACT [FMA:46594] synonym: "thyroepiglottus" EXACT [] synonym: "thyroepiglottus muscle" EXACT [] xref: FMA:46594 xref: NCIT:C33778 xref: SCTID:244819001 xref: UMLS:C0224182 {source="ncithesaurus:Thyroepiglottic_Muscle"} xref: Wikipedia:Thyroepiglottic_muscle is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx relationship: part_of UBERON:0008576 {source="FMA"} ! thyro-arytenoid property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png xsd:anyURI property_value: UBPROP:0000001 "Thexton, see notes from WG2.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: UBPROP:0000012 "not a distinct muscle in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010928 name: cricopharyngeus muscle namespace: uberon def: "The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. (from Vagus, CN X), and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus." [MFMO:0000009] comment: muscle belly synonym: "cricopharyngeal part" BROAD [] synonym: "cricopharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46661] synonym: "cricopharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46661] synonym: "cricopharyngeal part of inferior pharyngeal constrictor muscle" EXACT [] synonym: "cricopharyngeus" EXACT [FMA:46661] synonym: "cricopharyngeus portion of the inferior pharyngeal constrictor" EXACT [] synonym: "musculus cricopharyngeus" EXACT LATIN [FMA:46661, FMA:TA] synonym: "pars cricopharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46661] synonym: "pars cricopharyngea musculus constrictoris pharyngis inferioris" EXACT LATIN [FMA:TA] xref: FMA:46661 xref: MFMO:0000009 xref: NCIT:C32401 xref: SCTID:244804002 xref: UMLS:C0224214 {source="ncithesaurus:Cricopharyngeus_Muscle"} is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor property_value: UBPROP:0000001 "The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. , and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010932 name: crico-arytenoid muscle namespace: uberon def: "Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle" [Wikipedia:Cricoarytenoid_muscle] subset: grouping_class subset: non_informative synonym: "crico-arytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle] synonym: "cricoarytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle] synonym: "cricoarytenoid muscle" EXACT [Wikipedia:Cricoarytenoid_muscle] synonym: "cricoarytenoideus" EXACT [] xref: EMAPA:37498 {source="MA:th"} xref: MA:0002283 xref: NCIT:C32398 xref: SCTID:244811003 xref: UMLS:C0448336 {source="ncithesaurus:Cricoarytenoid_Muscle"} xref: Wikipedia:Cricoarytenoid_muscle is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle relationship: part_of UBERON:0001737 {source="FMA"} ! larynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png xsd:anyURI property_value: IAO:0000116 "candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530" xsd:string property_value: seeAlso https://github.com/obophenotype/uberon/issues/530 xsd:anyURI [Term] id: UBERON:0010936 name: thyropharyngeus muscle namespace: uberon comment: muscle belly synonym: "musculus thyropharyngeus" EXACT LATIN [FMA:46658, FMA:TA] synonym: "pars thyropharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46658] synonym: "pars thyropharyngea musculus constrictoris pharyngis inferioris" EXACT LATIN [FMA:TA] synonym: "thyropharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46658] synonym: "thyropharyngeal part of inferior constrictor pharyngeus muscle" EXACT [] synonym: "thyropharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46658] synonym: "thyropharyngeus" EXACT [FMA:46658] xref: FMA:46658 xref: SCTID:244805001 is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor [Term] id: UBERON:0010937 name: salpingopharyngeus muscle namespace: uberon def: "The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus." [Wikipedia:Salpingopharyngeus_muscle] synonym: "musculus salpingopharyngeus" RELATED LATIN [Wikipedia:Salpingopharyngeus_muscle] synonym: "salpingopharyngeus" EXACT [Wikipedia:Salpingopharyngeus_muscle] xref: FMA:46665 xref: NCIT:C33510 xref: SCTID:244807009 xref: UMLS:C1521985 {source="ncithesaurus:Salpingopharyngeus"} xref: Wikipedia:Salpingopharyngeus_muscle is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001042 ! chordate pharynx property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e3/Salpingopharyngeus.png xsd:anyURI property_value: UBPROP:0000001 "Salpingopharyngeus is a muscle that attaches to pharyngotympanic tube and the pharynx and is innervated by pharyngeal plexus of CN X and participates in oral/pharyngeal behaviors.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} [Term] id: UBERON:0010958 name: arytenoid muscle namespace: uberon def: "A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts." [Wikipedia:Arytenoid_muscle] synonym: "aryepiglotticus muscle" RELATED [Wikipedia:Arytenoid_muscle] synonym: "arytaenoideus" RELATED [Wikipedia:Arytenoid_muscle] synonym: "arytaenoideus" RELATED LATIN [Wikipedia:Arytenoid_muscle] synonym: "arytaenoideus muscle" RELATED [Wikipedia:Arytenoid_muscle] xref: NCIT:C32149 xref: UMLS:C1510945 {source="ncithesaurus:Arytenoid_Muscle"} xref: Wikipedia:Arytenoid_muscle is_a: UBERON:0006328 ! laryngeal intrinsic muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png xsd:anyURI property_value: IAO:0000116 "TODO - check child relationships" xsd:string [Term] id: UBERON:0011025 name: aryepiglotticus muscle namespace: uberon def: "The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis." [Wikipedia:Aryepiglottic_muscle] synonym: "ary-epiglottic part of oblique arytenoid" EXACT [FMA:46602] synonym: "aryepiglottic" EXACT [] synonym: "aryepiglottic muscle" EXACT [FMA:46602] synonym: "aryepiglotticus" EXACT [Wikipedia:Aryepiglottic_muscle] synonym: "aryepiglottus" EXACT [FEED:FEED] synonym: "aryepiglottus muscle" EXACT [FEED:FEED] synonym: "musculus aryepiglotticus" RELATED LATIN [Wikipedia:Aryepiglottic_muscle] synonym: "pars aryepiglottica (musculus arytenoideus obliquus)" EXACT [FMA:46602] synonym: "pars aryepiglottica musculi arytenoidei obliqui" RELATED LATIN [Wikipedia:Aryepiglottic_muscle] synonym: "pars aryepiglottica musculus arytenoidei obliqui" EXACT LATIN [FMA:TA] xref: FMA:46602 xref: NCIT:C32146 xref: SCTID:244818009 xref: UMLS:C0224177 {source="ncithesaurus:Aryepiglottic_Muscle"} xref: Wikipedia:Aryepiglottic_muscle is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx relationship: part_of UBERON:0008575 {source="FMA"} ! oblique arytenoid property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png xsd:anyURI [Term] id: UBERON:0011150 name: pharyngeal arch derived gill namespace: uberon def: "A gill that develops_from a pharyngeal gill precursor." [OBOL:automatic] subset: efo_slim subset: uberon_slim synonym: "branchia" RELATED [BTO:0000518] synonym: "gills" RELATED PLURAL [VHOG:0001214] xref: BTO:0000518 xref: EFO:0000933 xref: GAID:1218 xref: MAT:0000134 xref: MIAA:0000134 xref: NCIT:C92593 xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA xref: TAO:0000354 xref: UMLS:C0017558 {source="ncithesaurus:Gill"} xref: VHOG:0001214 xref: XAO:0000120 xref: ZFA:0000354 is_a: UBERON:0002535 ! gill property_value: UBPROP:0000001 "Anatomical structure consisting of a series of membranes which allow dissolved oxygen from the water to pass into the bloodstream and carbon dioxide to pass out of the bloodstream.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010171", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000001 "The respiratory organ of most aquatic animals that breathe water to obtain oxygen, consisting of a filamentous structure of vascular membranes across which dissolved gases are exchanged. [Free_Online_Dictionary]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001214", ontology="VHOG", source="http://bgee.unil.ch/", source="http://www.thefreedictionary.com/gill"} property_value: UBPROP:0000003 "Gill slits in the pharyngeal region of the intestine, which are also present in (at least) tunicates and acranians, are taken over to the craniote ancestor.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001214", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.209", source="http://bgee.unil.ch/"} [Term] id: UBERON:0011157 name: cuneiform cartilage namespace: uberon def: "The cuneiform cartilages of the larynx are two small, elongated pieces of yellow elastic cartilage, placed one on either side, in the aryepiglottic fold, where they give rise to small whitish elevations on the surface of the mucous membrane, just in front of the arytenoid cartilages." [Wikipedia:Cuneiform_cartilages] synonym: "cartilage of Morgagni" EXACT [FMA:55111] synonym: "cartilage of Wrisberg" EXACT [FMA:55111] synonym: "cartilagines cuneiformes" RELATED LATIN [Wikipedia:Cuneiform_cartilages] synonym: "cartilago apicalis intermedia" RELATED [AAO:0000690] synonym: "cartilago apicalis seu cartilago Santoriniana" RELATED [AAO:0000690] synonym: "Wrisbergi cartilage" EXACT [AAO:0000690] xref: AAO:0000690 xref: FMA:55111 xref: NCIT:C32417 xref: SCTID:264456009 xref: Wikipedia:Cuneiform_cartilages is_a: UBERON:0001739 {source="FMA"} ! laryngeal cartilage is_a: UBERON:0003583 ! larynx connective tissue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/50/Gray956.png xsd:anyURI property_value: UBPROP:0000001 "Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000690", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000012 "compare with AAO def, 'Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages.'" xsd:string {external_ontology="AAO"} [Term] id: UBERON:0011289 name: pharyngobasilar fascia namespace: uberon def: "The pharyngeal aponeurosis (or pharyngobasilar fascia, or fibrous coat), is situated between the mucous and muscular layers. It is thick above where the muscular fibers are wanting, and is firmly connected to the basilar portion of the occipital and the petrous portions of the temporal bones. As it descends it diminishes in thickness, and is gradually lost. It is strengthened posteriorly by a strong fibrous band, which is attached above to the pharyngeal spine on the under surface of the basilar portion of the occipital bone, and passes downward, forming a median raphe, which gives attachment to the Constrictores pharyngis." [Wikipedia:Pharyngobasilar_fascia] synonym: "pharyngeal aponeurosis" EXACT [FMA:55074] synonym: "pharyngeal aponeurosis" RELATED [Wikipedia:Pharyngobasilar_fascia] xref: FMA:55074 xref: SCTID:16675008 xref: Wikipedia:Pharyngobasilar_fascia relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0011311 name: hyoepiglottic ligament namespace: uberon def: "An elastic band connecting the anterior surface of the epiglottis to the upper border of the body of the hyoid bone." [Wikipedia:Hyoepiglottic_ligament] synonym: "hyo-epiglottic ligament" EXACT [FMA:55227] synonym: "igamentum hyoepiglotticum" EXACT LATIN [Wikipedia:Hyoepiglottic_ligament] xref: FMA:55227 xref: NCIT:C32751 xref: SCTID:279552007 xref: UMLS:C0225515 {source="ncithesaurus:Hyoepiglottic_Ligament"} xref: Wikipedia:Hyoepiglottic_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0011312 name: hyoepiglottic muscle namespace: uberon comment: Developed in mammals other than human. EDITOR NOTE: TODO add relationship to hyoepiglottic ligament. synonym: "hyo-epiglottic muscle" EXACT [] synonym: "hyoepiglotticus" EXACT [] synonym: "hyoepiglottus" EXACT [] is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0011345 name: pharyngeal raphe namespace: uberon def: "The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors." [Wikipedia:Pharyngeal_raphe] synonym: "raphe pharyngis" EXACT [Wikipedia:Pharyngeal_raphe] xref: FMA:55077 xref: SCTID:179763009 xref: Wikipedia:Pharyngeal_raphe is_a: UBERON:0003570 ! respiratory system connective tissue relationship: part_of UBERON:0001042 ! chordate pharynx property_value: UBPROP:0000012 "isa anatomical line in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011495 name: rectus thoracis muscle namespace: uberon def: "Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration." [MURDOCH:2224] synonym: "rectus thoracis" EXACT [MA:0002366] xref: EMAPA:37709 {source="MA:th"} xref: MA:0002366 is_a: UBERON:0014398 ! respiratory muscle [Term] id: UBERON:0011623 name: horn of thyroid cartilage namespace: uberon synonym: "cornu of thyroid cartilage" EXACT [FMA:55300] synonym: "thyroid cartilage horn" EXACT [FMA:55300] xref: FMA:55300 xref: SCTID:279518009 relationship: part_of UBERON:0001738 ! thyroid cartilage [Term] id: UBERON:0011624 name: superior horn of thyroid cartilage namespace: uberon def: "The superior horn of thyroid cartilage is long and narrow, directed upward, backward, and medialward, and ends in a conical extremity, which gives attachment to the lateral hyothyroid ligament." [Wikipedia:Superior_horn_of_thyroid_cartilage] synonym: "cornu superius (cartilago thyroidea)" EXACT [FMA:55294] synonym: "cornu superius cartilaginis thyroideae" EXACT LATIN [] synonym: "superior cornu of thyroid cartilage" EXACT [FMA:55294] xref: FMA:55294 xref: SCTID:279520007 xref: Wikipedia:Superior_horn_of_thyroid_cartilage is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage [Term] id: UBERON:0011625 name: inferior horn of thyroid cartilage namespace: uberon def: "The inferior horn of thyroid cartilage is short and thick; it is directed downward, with a slight inclination forward and medialward, and presents, on the medial side of its tip, a small oval articular facet for articulation with the side of the cricoid cartilage." [Wikipedia:Inferior_horn_of_thyroid_cartilage] synonym: "cornu inferius (cartilago thyroidea)" EXACT [FMA:55297] synonym: "cornu inferius cartilaginis thyroidea" EXACT LATIN [FMA:55297, FMA:TA] synonym: "cornu inferius cartilaginis thyroideae" EXACT LATIN [] xref: FMA:55297 xref: SCTID:279521006 xref: Wikipedia:Inferior_horn_of_thyroid_cartilage is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage [Term] id: UBERON:0011862 name: pulmonary collagen fibril namespace: uberon def: "The connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011641] subset: pheno_slim relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0011985 name: infraorbital sinus namespace: uberon def: "An air-filled recess in the head of birds which lies lateral to the nasal cavity into which it opens" [http://medical-dictionary.thefreedictionary.com/infraorbital+sinus] synonym: "sinus infraorbitalis" EXACT LATIN [] is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0012055 name: left lung lower lobe bronchiole namespace: uberon def: "A bronchiole that is part of a lower lobe of left lung." [OBOL:automatic] comment: Mouse has single left lobe synonym: "bronchiole of left lower lobe" EXACT [] synonym: "bronchiole of left lower lobe of lung" EXACT [] synonym: "left lung caudal lobe bronchiole" EXACT [EHDAA2:0000947] xref: EHDAA2:0000947 xref: SCTID:80548008 is_a: UBERON:0003539 ! left lung bronchiole relationship: part_of UBERON:0008953 ! lower lobe of left lung [Term] id: UBERON:0012056 name: left lung upper lobe bronchiole namespace: uberon def: "A bronchiole that is part of a upper lobe of left lung." [OBOL:automatic] comment: Mouse has single left lobe synonym: "bronchiole of left cranial lobe" EXACT [] synonym: "bronchiole of left upper lobe" EXACT [] synonym: "bronchiole of left upper lobe of lung" EXACT [] synonym: "left lung cranial lobe bronchiole" EXACT [EHDAA2:0000955] xref: EHDAA2:0000955 xref: SCTID:72426004 is_a: UBERON:0003539 ! left lung bronchiole relationship: part_of UBERON:0008952 ! upper lobe of left lung [Term] id: UBERON:0012059 name: right lung lower lobe bronchiole namespace: uberon def: "A bronchiole that is part of a lower lobe of right lung." [OBOL:automatic] synonym: "bronchiole of right cranial lobe" EXACT [] synonym: "bronchiole of right lower lobe" EXACT [] synonym: "bronchiole of right lower lobe of lung" EXACT [] synonym: "right lung caudal lobe bronchiole" EXACT [EHDAA2:0004094] xref: EHDAA2:0004094 xref: EMAPA:19004 xref: SCTID:15215000 is_a: UBERON:0003538 ! right lung bronchiole relationship: part_of UBERON:0002171 ! lower lobe of right lung [Term] id: UBERON:0012063 name: lobar bronchus of right lung middle lobe namespace: uberon def: "A lobar bronchus that is part of a middle lobe of right lung." [OBOL:automatic] synonym: "bronchus of right middle lobe" EXACT [FMA:7401] synonym: "middle lobar bronchus" EXACT [FMA:7401] synonym: "middle lobe bronchus" EXACT [FMA:7401] xref: EMAPA:17998 xref: FMA:7401 is_a: UBERON:0003404 ! lobar bronchus of right lung relationship: part_of UBERON:0002174 ! middle lobe of right lung [Term] id: UBERON:0012065 name: lobar bronchus of left lung upper lobe namespace: uberon def: "A lobar bronchus that is part of a upper lobe of left lung." [OBOL:automatic] synonym: "bronchus of left upper lobe" EXACT [FMA:7423] synonym: "left superior lobar bronchus" EXACT [FMA:7423] synonym: "left upper lobar bronchus" EXACT [FMA:7423] synonym: "left upper lobe bronchus" EXACT [FMA:7423] xref: FMA:7423 is_a: UBERON:0003405 ! lobar bronchus of left lung relationship: part_of UBERON:0008952 ! upper lobe of left lung [Term] id: UBERON:0012066 name: lobar bronchus of left lung lower lobe namespace: uberon def: "A lobar bronchus that is part of a lower lobe of left lung." [OBOL:automatic] synonym: "bronchus of left lower lobe" EXACT [FMA:7432] synonym: "left inferior lobar bronchus" EXACT [FMA:7432] synonym: "left lower lobar bronchus" EXACT [FMA:7432] synonym: "left lower lobe bronchus" EXACT [FMA:7432] xref: FMA:7432 xref: SCTID:361961004 is_a: UBERON:0003405 ! lobar bronchus of left lung relationship: part_of UBERON:0008953 ! lower lobe of left lung [Term] id: UBERON:0012067 name: primary bronchiole namespace: uberon def: "A bronchiole that arises from a segmental bronchus and does not contain cartilage." [ISBN:0123813611, Wikipedia:Bronchiole#Primary_bronchioles] synonym: "proximal bronchiole" EXACT [FMA:62510] xref: FMA:62510 xref: Wikipedia:Bronchiole#Primary_bronchioles is_a: UBERON:0002186 {source="FMA"} ! bronchiole [Term] id: UBERON:0012068 name: right lung middle lobe bronchiole namespace: uberon def: "A bronchiole that is part of a middle lobe of right lung." [OBOL:automatic] synonym: "bronchiole of middle right lobe" EXACT [] synonym: "bronchiole of right middle lobe" EXACT [] synonym: "bronchiole of right middle lobe of lung" EXACT [] xref: EMAPA:19008 xref: SCTID:69714005 is_a: UBERON:0003538 ! right lung bronchiole relationship: part_of UBERON:0002174 ! middle lobe of right lung [Term] id: UBERON:0012082 name: bronchial lumen namespace: uberon def: "An anatomical cavity that is part of a bronchus." [OBOL:automatic] synonym: "bronchial lumen" EXACT [FMA:62646] synonym: "lumen of bronchus" EXACT [FMA:62646] xref: FMA:62646 xref: SCTID:199401001 relationship: part_of UBERON:0002185 {source="FMA"} ! bronchus [Term] id: UBERON:0012083 name: lumen of primary bronchus namespace: uberon def: "An anatomical cavity that is part of a main bronchus." [OBOL:automatic] synonym: "lumen of main bronchus" EXACT [FMA:13116] synonym: "main bronchial lumen" EXACT [FMA:13116] synonym: "principal bronchial lumen" EXACT [] xref: FMA:13116 is_a: UBERON:0012082 ! bronchial lumen relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0012084 name: lumen of secondary bronchus namespace: uberon def: "An anatomical cavity that is part of a lobar bronchus." [OBOL:automatic] synonym: "lobar bronchial lumen" EXACT [FMA:62520] synonym: "lumen of lobar bronchus" EXACT [FMA:62520] synonym: "secondary bronchial lumen" EXACT [] xref: FMA:62520 is_a: UBERON:0012082 ! bronchial lumen relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0012085 name: lumen of tertiary bronchus namespace: uberon def: "An anatomical cavity that is part of a segmental bronchus." [OBOL:automatic] synonym: "lumen of segmental bronchus" EXACT [FMA:62593] synonym: "segmental bronchial lumen" EXACT [FMA:62593] xref: FMA:62593 is_a: UBERON:0012082 ! bronchial lumen relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0012086 name: lumen of parabronchus namespace: uberon def: "An anatomical cavity that is part of a parabronchus." [OBOL:automatic] is_a: UBERON:0012085 ! lumen of tertiary bronchus relationship: part_of UBERON:0008961 ! parabronchus [Term] id: UBERON:0012087 name: air capillary of parabronchus namespace: uberon def: "An extension of the parabronchus, the walls of which are the site of gas exchange" [http://www.vetmed.vt.edu/education/Curriculum/VM8054/Labs/Lab26/Examples/exairves.htm, ISBN:0073040584] synonym: "air capillary" EXACT [] synonym: "air vesicle" EXACT [] relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0012088 name: lateroobronchus namespace: uberon is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0012100 name: appendicocostalis muscle namespace: uberon def: "One of of three muscles associated with the uncinate processes." [PMID:15755883] synonym: "appendicocostalis" EXACT [PMID:15755883] is_a: UBERON:0003831 ! respiratory system muscle [Term] id: UBERON:0012121 name: respiratory velum namespace: uberon def: "A respiratory pump found in basal craniates" [Wikipedia:http\://palaeos.com/vertebrates/glossary/glossaryUV.html] synonym: "velum" BROAD [] is_a: UBERON:0000171 ! respiration organ property_value: RO:0002161 NCBITaxon:7776 property_value: RO:0002175 NCBITaxon:7762 property_value: UBPROP:0000008 "this is restricted to hagfishes; structure with same name found in tunicates." xsd:string property_value: UBPROP:0000009 "Muscular scroll-like flap that moves water through median nostril and over gills" xsd:string property_value: UBPROP:0000015 "trifid and posteriorly directed lamina arising from roof of pharynx, behind posterior end of naso-pharyngeal duct;" xsd:string [Term] id: UBERON:0012181 name: tonsil crypt namespace: uberon def: "Tonsils consist of an extensive system of crypts, which result in a large internal surface. The tonsils contain four lymphoid compartments that influence immune functions, namely the reticular crypt epithelium, the extrafollicular area, the mantle zones of lymphoid follicles, and the follicular germinal centers. In human palatine tonsils, the very first part exposed to the outside environment is tonsillar epithelium." [Wikipedia:Tonsillar_crypts] synonym: "cryptae tonsillares" EXACT LATIN [Wikipedia:Tonsillar_crypts] synonym: "tonsillar crypt" EXACT [FMA:55044] xref: FMA:55044 xref: MA:0000777 xref: NCIT:C33791 xref: SCTID:143723007 xref: UMLS:C0229876 {source="ncithesaurus:Tonsillar_Crypt"} xref: Wikipedia:Tonsillar_crypts is_a: UBERON:0013696 ! tonsil epithelium relationship: part_of UBERON:0002372 {source="MA"} ! tonsil [Term] id: UBERON:0012278 name: gland of nasal mucosa namespace: uberon def: "The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands." [Wikipedia:Nasal_glands] subset: pheno_slim synonym: "glandula nasalis" EXACT LATIN [] synonym: "glandulae nasales" EXACT LATIN [] synonym: "nasal gland" BROAD [] xref: EMAPA:37871 {source="MA:th"} xref: FMA:321518 xref: NCIT:C22725 xref: SCTID:368881007 xref: UMLS:C1522269 {source="ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC"} xref: Wikipedia:Nasal_glands is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0001826 ! nasal cavity mucosa [Term] id: UBERON:0012330 name: nasal-associated lymphoid tissue namespace: uberon def: "The lymphocytic cell population present in the mucosa of the nasopharyngeal duct of some animals." [ncithesaurus:Nasal-Associated_Lymphoid_Tissue] synonym: "NALT" EXACT ABBREVIATION [Wikipedia:Mucosa-associated_lymphoid_tissue#Categorisation] synonym: "naso-pharyngeal lymphoid tissue" EXACT [FMA:79771] xref: FMA:79771 xref: MA:0003030 xref: NCIT:C77659 xref: UMLS:C2698431 {source="ncithesaurus:Nasal-Associated_Lymphoid_Tissue"} relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0012416 name: respiratory system arterial smooth muscle namespace: uberon xref: EMAPA:37567 {source="MA:th"} xref: MA:0001802 is_a: UBERON:0004297 ! respiratory system blood vessel smooth muscle relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel [Term] id: UBERON:0013074 name: cornual diverticulum namespace: uberon def: "An extension of the frontal sinus into the horn" [http://cal.vet.upenn.edu/projects/grossanat/largemenu/rheadsinlr.htm] synonym: "cornual sinus" EXACT [] xref: SCTID:53994006 relationship: part_of UBERON:0001760 ! frontal sinus [Term] id: UBERON:0013157 name: 1st arch maxillary-mandibular cleft namespace: uberon synonym: "1st arch maxillary-mandibular groove ectoderm" EXACT [EHDAA2:0000046] synonym: "ectoderm of maxillary-mandibular groove" EXACT [EMAPA:16395] xref: EHDAA2:0000046 xref: EMAPA:16395 is_a: UBERON:0005879 ! pharyngeal cleft [Term] id: UBERON:0013167 name: cricopharyngeal ligament namespace: uberon def: "Laryngeal ligament that connects the cricoid cartilage to the pharynx[WP,modified]" [Wikipedia:Cricopharyngeal_ligament] synonym: "crico-pharyngeal ligament" EXACT [] synonym: "ligamentum cricopharyngeum" EXACT LATIN [Wikipedia:Cricopharyngeal_ligament] xref: FMA:55260 xref: SCTID:172455006 xref: Wikipedia:Cricopharyngeal_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx [Term] id: UBERON:0013168 name: thyroepiglottic ligament namespace: uberon def: "Laryngeal ligament that connects the epiglottis to the thyroid cartilage[WP,modified]" [Wikipedia:Thyroepiglottic_ligament] synonym: "ligamentum thyroepiglotticum" EXACT LATIN [] synonym: "thyroepiglottic ligament" EXACT [FMA:55230] xref: FMA:55230 xref: NCIT:C33777 xref: SCTID:279562000 xref: UMLS:C0225514 {source="ncithesaurus:Thyroepiglottic_Ligament"} xref: Wikipedia:Thyroepiglottic_ligament is_a: UBERON:0006325 {source="FMA"} ! laryngeal intrinsic ligament [Term] id: UBERON:0013169 name: vestibular ligament namespace: uberon def: "The vestibular fold is a fibroelastic band which passes from the ventral margin of the cuneiform cartilage to the cranial dorsal surface of the thyroid cartilage. It forms the support for the free edge of the vestibular fold." [MURDOCH:2193, Wikipedia:Vestibular_ligament] synonym: "ligamentum vestibulare" EXACT LATIN [Wikipedia:Vestibular_ligament] synonym: "ventricular ligament" EXACT [Wikipedia:Vestibular_ligament] synonym: "vestibular ligament of larynx" EXACT [] xref: FMA:64147 xref: SCTID:279561007 xref: Wikipedia:Vestibular_ligament is_a: UBERON:0006325 {source="FMA"} ! laryngeal intrinsic ligament [Term] id: UBERON:0013170 name: cricoarytenoid ligament namespace: uberon def: "Laryngeal ligament that connects the cricoid and arytenoid cartilages[WP,modified]" [Wikipedia:Cricoarytenoid_ligament] synonym: "crico-arytenoid ligament" EXACT [FMA:55261] synonym: "ligamentum cricoaryteneoideum" EXACT LATIN [Wikipedia:Cricoarytenoid_ligament] xref: FMA:55261 xref: SCTID:172533001 xref: Wikipedia:Cricoarytenoid_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx [Term] id: UBERON:0013171 name: cricothyroid ligament namespace: uberon def: "This attaches the caudal border of the thyroid cartilage to the ventral arch of the cricoid cartilage. Its sheetlike ventral portion is sometimes referred to as the cricothyroid membrane. Being elastic, it 'balances' movement at the hinge-like cricothyroid joint and determines the resting position of the larynx when the muscles are relaxed[MURDOCH]. The cricothyroid ligament is the larger part of the laryngeal membrane, continuing inferiorly as a median or anterior part and twin lateral ligaments. The median cricothyroid ligament is a flat band of white tissue joining the cricoid and thyroid cartilages, while the lateral cricothyroid ligament is also known as the cricothyroid membrane (also called conus elasticus)." [MURDOCH:483, Wikipedia:Cricothyroid_ligament] synonym: "crico-thyroid ligament" EXACT [] synonym: "ligamentum cricothyreoideum" EXACT LATIN [Wikipedia:Cricothyroid_ligament] xref: FMA:55233 xref: NCIT:C32403 xref: SCTID:279558006 xref: UMLS:C0225542 {source="ncithesaurus:Cricothyroid_Ligament"} xref: Wikipedia:Cricothyroid_ligament is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0013172 name: cricotracheal ligament namespace: uberon def: "The cricotracheal ligament connects the cricoid cartilage with the first ring of the trachea[WP]. The caudal border of the cricoid cartilage is joined to the first ring of the trachea by this ligament. It is an extrinsic laryngeal ligament. It resembles the fibrous membrane which connects the cartilaginous rings of the trachea to each other." [MURDOCH:486, Wikipedia:Cricotracheal_ligament] xref: FMA:55259 xref: NCIT:C32405 xref: SCTID:279553002 xref: UMLS:C0225543 {source="ncithesaurus:Cricotracheal_Ligament"} xref: Wikipedia:Cricotracheal_ligament is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx [Term] id: UBERON:0013233 name: supraorbital gland namespace: uberon def: "A lateral nasal gland that removes sodium chloride from the bloodstream." [Wikipedia:Supraorbital_gland] xref: Wikipedia:Supraorbital_gland is_a: UBERON:0012278 ! gland of nasal mucosa property_value: UBPROP:0000009 "The gland's function is similar to that of the kidneys, though it is much more efficient at removing salt, allowing Penguins to survive without access to fresh water. Contrary to popular belief, the gland does not directly convert saltwater to freshwater. The term supraorbital refers to the area just above the eye socket (which is known as the orbit of the eye. ) Living in saltwater environments would naturally pose a large problem for penguins because the ingestion of saltwater would be detrimental to a penguin's health. Although penguins do not directly drink water, it is taken in when they engulf prey. As a result, saltwater enters their system and must be effectively excreted. The supraorbital gland has thus enabled the penguins' survival in such environments due to its water-filtering capability. The gland is located just above the eyes and surrounds a capillary in the head. This capillary constantly strains out the salt in the saltwater that a penguin takes in. Since the byproduct of the gland has roughly five times as much salt as would normally be found in the animal's fluids, the supraorbital gland is highly efficient. The penguin excretes the salt byproduct as a brine through its bill. Often, the fluid drips out, and this gives the appearance of a runny nose. However, the fluid may also be sneezed out. In the absence of saltwater, caused by captivity, the supraorbital gland will lie dormant as it has no other purpose. Having a dormant supraorbital gland does not negatively affect the health of a penguin" xsd:string [Term] id: UBERON:0013479 name: lung endothelium namespace: uberon def: "A blood vessel endothelium that is part of a lung [Automatically generated definition]." [OBOL:automatic] synonym: "respiratory endothelium" RELATED [BTO:0004128] xref: BTO:0004128 xref: CALOHA:TS-0573 is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0004702 ! respiratory system blood vessel endothelium relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0013653 name: velar skeleton namespace: uberon def: "Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches" [http://orcid.org/0000-0002-6601-2165, ISBN:9780226315683] synonym: "skeleton of velum" EXACT [http://orcid.org/0000-0002-6601-2165] relationship: part_of UBERON:0012121 ! respiratory velum property_value: RO:0002161 NCBITaxon:7776 property_value: RO:0002175 NCBITaxon:7762 [Term] id: UBERON:0013688 name: tonsil germinal center namespace: uberon def: "A germinal center that is part of a tonsil." [OBOL:automatic] synonym: "tonsil reaction center" RELATED [CALOHA:TS-1288] xref: CALOHA:TS-1288 relationship: part_of UBERON:0002372 ! tonsil property_value: IAO:0000116 "consider adding related terms, e.g. secondary lymphoid tissue of tonsil" xsd:string property_value: UBPROP:0000001 "The germinal center or reaction center is the activated center of a lymphoid follicle in secondary lymphoid tissue where B-lymphocytes are stimulated by antigens and helper T cells (T-lymphocytes, helper-inducer) are stimulated to generate memory cells. Here, the germinal center of a tonsil[TS-1288]." xsd:string {source="TS-1288"} [Term] id: UBERON:0013696 name: tonsil epithelium namespace: uberon def: "The epithelium that forms the surface of the tonsil dips into the underlying connective tissue in numerous places, forming crypts kown as tonsillar crypts. Stratified squamous epithelium, that may be heavily infiltrated by lymphocytes. Epithelial cells are present in the germinal as well as in the periphery of the nodule." [CALOHA:TS-2070] synonym: "epithelium of tonsil" RELATED [CALOHA:TS-2070] synonym: "tonsil epithelial cell" RELATED [CALOHA:TS-2070] xref: CALOHA:TS-2070 is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0002372 ! tonsil [Term] id: UBERON:0014372 name: fibroelastic membrane of larynx namespace: uberon def: "A layer of fibrous and elastic fibers, taking the place of the submucosa in the larynx. It is divided by the laryngeal ventricle into two parts: the quadrangular membrane superiorly and the conus elasticus inferiorly." [http://www.medilexicon.com/medicaldictionary.php?t=53910] synonym: "fibro-elastic membrane of larynx" EXACT [FMA:55239] synonym: "membrana fibroelastica laryngis" EXACT LATIN [http://www.medilexicon.com/medicaldictionary.php?t=53910] xref: FMA:55239 xref: SCTID:361942003 relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0014385 name: aryepiglottic fold namespace: uberon def: "The entrance of the larynx is a triangular opening, narrow in front, wide behind, and sloping obliquely downward and backward. It is bounded, in front, by the epiglottis; behind, by the apices of the arytenoid cartilages, the corniculate cartilages, and the interarytenoid notch; and on either side, by a fold of mucous membrane, enclosing ligamentous and muscular fibers, stretched between the side of the epiglottis and the apex of the arytenoid cartilage; this is the aryepiglottic fold, on the posterior part of the margin of which the cuneiform cartilage forms a more or less distinct whitish prominence, the cuneiform tubercle. These folds form the upper borders of the quadrangular membrane." [Wikipedia:Aryepiglottic_fold] subset: pheno_slim synonym: "ary-epiglottic fold" EXACT [FMA:55448] synonym: "aryepiglottic folds" RELATED [Wikipedia:Aryepiglottic_fold] synonym: "aryepiglottic sphincter" RELATED [Wikipedia:Aryepiglottic_fold] synonym: "aryepiglottis" RELATED [Wikipedia:Aryepiglottic_fold] synonym: "plica aryepiglottica" RELATED LATIN [Wikipedia:Aryepiglottic_fold] xref: FMA:55448 xref: NCIT:C32147 xref: SCTID:245503009 xref: UMLS:C1510944 {source="ncithesaurus:Aryteno-epiglottic_Fold"} xref: Wikipedia:Aryepiglottic_fold relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0014398 name: respiratory muscle namespace: uberon def: "Muscle that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001004 ! respiratory system property_value: IAO:0000232 "this class may be merged with 'respiratory system muscle'; check intercostals" xsd:string [Term] id: UBERON:0014479 name: elephant trunk namespace: uberon def: "An appendage formed by the fusion of the nose and upper lip." [https://github.com/obophenotype/uberon/issues/295, Wikipedia:Elephant#Trunk] synonym: "proboscis" BROAD [] synonym: "trunk" BROAD INCONSISTENT [] synonym: "trunk of elephant" EXACT [] xref: SCTID:41253007 relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0014765 name: crus of diaphragm namespace: uberon def: "The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta." [PMID:23586979] comment: Classification notes: May be considered an external sphincter[PMID:8224664] synonym: "crura of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] synonym: "crural diaphragm" EXACT [PMID:23586979] synonym: "crus of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] synonym: "diaphragm crura" RELATED PLURAL [] synonym: "diaphragmatic crura" RELATED [Wikipedia:Crus_of_diaphragm] xref: EHDAA2:0000597 xref: EMAPA:17703 xref: SCTID:244668003 xref: VHOG:0001546 xref: Wikipedia:Crus_of_diaphragm relationship: part_of UBERON:0001103 {source="PMID:23586979"} ! diaphragm [Term] id: UBERON:0014766 name: right crus of diaphragm namespace: uberon def: "A crus of diaphragm that is in_the_right_side_of a diaphragm." [OBOL:automatic] synonym: "crus dextrum (Diaphragma)" EXACT LATIN [FMA:58286, FMA:TA] synonym: "crus dextrum diaphragmatis" EXACT LATIN [FMA:58286, FMA:TA] synonym: "external sphincter of esophagus" EXACT [FMA:58286] synonym: "right crus of diaphragm" EXACT [FMA:58286] synonym: "right crus of lumbar part of diaphragm" EXACT [FMA:58286] xref: FMA:58286 xref: SCTID:362690009 is_a: UBERON:0014765 ! crus of diaphragm property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0014767 name: left crus of diaphragm namespace: uberon def: "A crus of diaphragm that is in_the_left_side_of a diaphragm." [OBOL:automatic] synonym: "crus sinistrum (Diaphragma)" EXACT LATIN [FMA:58287, FMA:TA] synonym: "crus sinistrum diaphragmatis" EXACT LATIN [FMA:58287, FMA:TA] synonym: "left crus of diaphragm" EXACT [FMA:58287] synonym: "left crus of lumbar part of diaphragm" EXACT [FMA:58287] xref: FMA:58287 xref: SCTID:244937004 is_a: UBERON:0014765 ! crus of diaphragm property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0015214 name: arcuate ligament namespace: uberon def: "A ligament that is part of a diaphragm." [OBOL:automatic] xref: EMAPA:19236 xref: FMA:58280 relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0015215 name: median arcuate ligament namespace: uberon def: "The median arcuate ligament is a ligament under the diaphragm that connects the right and left crura of diaphragm." [Wikipedia:Median_arcuate_ligament] xref: FMA:58281 xref: Wikipedia:Median_arcuate_ligament is_a: UBERON:0015214 ! arcuate ligament [Term] id: UBERON:0015246 name: septal organ of Masera namespace: uberon def: "A small island of olfactory neuroepithelium lying bilaterally at the ventral base of the nasal septum near the entrance of the nasopharynx." [NCBIBook:NBK55971] synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] xref: EMAPA:35766 xref: MA:0002890 relationship: part_of UBERON:0001997 ! olfactory epithelium property_value: UBPROP:0000008 "This olfactory apparatus has been observed in many mammals, including rat, mouse, hamster, deer mouse, rabbit, opossum, guinea pig, bandicoot, and koala (Rodolfo-Masera 1943; Adams and McFarland 1971; Bojsen-Moller 1975; Katz and Merzel 1977; Breipohl et al. 1983, 1989; Kratzing 1984a, 1984b; Taniguchi et al. 1993), but not in cat (Breipohl et al. 1983) or ferret (Weiler and Farbman 2003)" xsd:string {source="NCBIBook:NBK55971"} [Term] id: UBERON:0015247 name: bifurcation of trachea namespace: uberon def: "This is the point at which the trachea splits into two (left and right) principal bronchi. It is located in the region of the fourth to sixth intercostal space, though this varies with species and with respiratory phase. This position closely associates the bifurcation with the heart base. The thickened median crest initiating the bifurcation is called the tracheal carina ." [MURDOCH:1966] synonym: "bifurcatio tracheae" EXACT LATIN [FMA:TA] synonym: "tracheal bifurcation" EXACT [FMA:7464] xref: EMAPA:37555 {source="MA:th"} xref: FMA:7464 xref: MA:0003114 xref: SCTID:361954003 relationship: part_of UBERON:0003126 {source="MA"} ! trachea [Term] id: UBERON:0015329 name: respiratory system basement membrane namespace: uberon def: "A basement membrane of epithelium that is part of a respiratory system." [OBOL:automatic] xref: EMAPA:37570 {source="MA:th"} xref: MA:0001815 relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0003570 {source="MA"} ! respiratory system connective tissue [Term] id: UBERON:0015472 name: tracheobronchial lymph node namespace: uberon alt_id: UBERON:0016381 def: "A lymph node located near the bifurcation of the trachea." [ncithesaurus:Tracheobronchial_Lymph_Node] synonym: "bronchial lymph node" NARROW [MA:0003078] synonym: "lymph node, tracheobronchial" RELATED [] synonym: "nodus tracheobronchiale lymphaticus" EXACT [FMA:5950] synonym: "tracheobronchal lymph node" EXACT [PMID:16624319] synonym: "tracheobronchal node" EXACT [PMID:16624319] synonym: "tracheobronchial node" EXACT [FMA:5950] xref: FMA:5950 xref: MA:0003068 xref: NCIT:C77651 xref: SCTID:245341003 xref: UMLS:C0229751 xref: Wikipedia:Tracheobronchial_lymph_nodes relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: UBPROP:0000001 "Single (unpaired) lymph node at the tracheal bifurcation." xsd:string {source="PMID:16624319", taxon="NCBITaxon:10090"} [Term] id: UBERON:0015784 name: duct of olfactory gland namespace: uberon def: "A duct that is part of a olfactory gland." [OBOL:automatic] synonym: "olfactory gland duct" EXACT [] relationship: part_of UBERON:0002232 ! olfactory gland [Term] id: UBERON:0015785 name: acinus of olfactory gland namespace: uberon def: "A acinus that is part of a olfactory gland." [OBOL:automatic] synonym: "acinar part of olfactory gland" EXACT [] synonym: "olfactory gland acinus" EXACT [] relationship: part_of UBERON:0002232 ! olfactory gland [Term] id: UBERON:0015786 name: respiratory segment of nasal mucosa namespace: uberon def: "The portion of the nasal mucosa that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] synonym: "pars respiratoria tunicae mucosae nasi" EXACT LATIN [FMA:77198, FMA:TA] synonym: "respiratory zone of nasal mucosa" EXACT [FMA:77198] xref: FMA:77198 is_a: UBERON:0001826 ! nasal cavity mucosa relationship: part_of UBERON:0001004 ! respiratory system property_value: UBPROP:0000010 "lined with ciliated pseudostratified columnar epithelium (respiratory epithelium). The respiratory segment has a very vascularized lamina propria allowing the venous plexuses of the conchal mucosa to engorge with blood, restricting airflow and causing air to be directed to the other side of the nose." xsd:string {source="Wikipedia:Nasal_cavity"} [Term] id: UBERON:0015787 name: upper respiratory conduit namespace: uberon def: "Any anatomical conduit which is part of the upper respiratory tract" [http://orcid.org/0000-0002-6601-2165] synonym: "respiratory conduit" RELATED [FMA:265132] xref: FMA:265132 relationship: part_of UBERON:0001557 ! upper respiratory tract property_value: UBPROP:0000001 "Anatomical cluster which consists a segment of the upper respiratory tract[FMA:265132]." xsd:string {source="FMA:265132"} [Term] id: UBERON:0015788 name: olfactory apparatus chamber namespace: uberon def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] xref: FMA:265136 is_a: UBERON:0015787 ! upper respiratory conduit [Term] id: UBERON:0015794 name: left lung lobar bronchus epithelium namespace: uberon def: "A epithelium that is part of a lobar bronchus of left lung." [OBOL:automatic] xref: EMAPA:17658 xref: MA:0003135 is_a: UBERON:0002339 ! epithelium of lobar bronchus is_a: UBERON:0003365 ! epithelium of left lung relationship: part_of UBERON:0003405 ! lobar bronchus of left lung [Term] id: UBERON:0015795 name: right lung lobar bronchus epitheium namespace: uberon def: "A epithelium that is part of a lobar bronchus of right lung." [OBOL:automatic] xref: EMAPA:17666 xref: MA:0003136 is_a: UBERON:0002339 ! epithelium of lobar bronchus is_a: UBERON:0003364 ! epithelium of right lung relationship: part_of UBERON:0003404 ! lobar bronchus of right lung [Term] id: UBERON:0016405 name: pulmonary capillary namespace: uberon def: "A capillary that is part of a lung." [OBOL:automatic] subset: pheno_slim synonym: "capillary of lung" EXACT [FMA:14121] xref: FMA:14121 is_a: UBERON:0003512 ! lung blood vessel is_a: UBERON:0003526 ! respiratory system capillary relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0016458 name: esophageal hiatus namespace: uberon def: "A hole in the diaphragm through which the esophagus passes" [HP:0002036] subset: pheno_slim synonym: "esophageal hiatus of diaphragm" EXACT [FMA:58289] synonym: "oesophageal aperture" EXACT [FMA:58289] synonym: "oesophageal hiatus" EXACT [FMA:58289] xref: FMA:58289 relationship: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0016481 name: bronchial lymph node namespace: uberon def: "A lymph node that is part of a bronchus." [OBOL:automatic] xref: MA:0003078 xref: NCIT:C32232 xref: UMLS:C1305372 relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0016545 name: pharyngeal ectoderm namespace: uberon alt_id: UBERON:2001379 def: "The external part of the developing pharynx that is made of ectoderm. During vertebrate development, pockets form in pharyngeal ectoderm between the pharyngeal arches." [http://orcid.org/0000-0002-6601-2165, PMID:23020903] xref: TAO:0001379 xref: ZFA:0001379 is_a: UBERON:0003351 ! pharyngeal epithelium relationship: part_of UBERON:0001042 ! chordate pharynx [Term] id: UBERON:0017616 name: afferent spiracular artery namespace: uberon def: "A section of a pharyngeal arch artery that carries blood away from the spiracle." [ISBN:0073040584] is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0003118 ! pharyngeal arch artery 1 [Term] id: UBERON:0017617 name: efferent spiracular artery namespace: uberon def: "A section of a pharyngeal arch artery that drains the spiracle." [ISBN:0073040584] is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0003118 ! pharyngeal arch artery 1 [Term] id: UBERON:0018103 name: posterior fascicle of palatopharyngeus namespace: uberon def: "The thinner portion of the muscle of the palatopharyngeal arch, originating in the region of the midline where its fibers interdigitate with the contralateral partner, then passing posterior to the levator veli palatini muscle to join the longitudinal layer of pharyngeal musculature; acts as a sort of sphincter, reducing the caliber of the isthmus of fauces at the palatopharyngeal arch." [http://medical-dictionary.thefreedictionary.com/velopharyngeal+sphincter] synonym: "fasciculus posterior (musculus palatopharyngeus)" EXACT [FMA:46684] synonym: "fasciculus posterior musculus palatopharyngei" EXACT LATIN [FMA:46684, FMA:TA] synonym: "musculus sphincter palatopharyngeus" EXACT [FMA:TA] synonym: "palatopharyngeal sphincter" EXACT [FMA:46684] synonym: "velopharyngeal sphincter" EXACT [http://medical-dictionary.thefreedictionary.com/velopharyngeal+sphincter] xref: FMA:46684 xref: SCTID:244801005 relationship: part_of UBERON:0010234 {source="FMA"} ! palatopharyngeus muscle [Term] id: UBERON:0018226 name: pulmonary part of lymphatic system namespace: uberon def: "An organ system subdivision that is the part of the lymphoid system that includes the pulmonary lymphatic vessels." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "pulmonary lymphatic chain" EXACT [FMA:67999] synonym: "pulmonary lymphatic vasculature" RELATED [] xref: FMA:67999 relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0018227 name: pulmonary lymphatic vessel namespace: uberon def: "A lymphatic vessel that is part of a lung." [OBOL:automatic] synonym: "lymphatic vessel of lung" EXACT [] xref: FMA:234006 xref: SCTID:321862009 is_a: UBERON:0003456 ! respiratory system lymphatic vessel relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0018226 ! pulmonary part of lymphatic system [Term] id: UBERON:0019190 name: mucous gland of lung namespace: uberon synonym: "bronchial gland" EXACT [FMA:13119] synonym: "bronchial mucous gland" EXACT [FMA:13119] synonym: "peribronchial gland" EXACT [BTO:0004638] xref: BTO:0004638 xref: FMA:13119 xref: SCTID:88410004 is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0034680 name: laryngeal prominence namespace: uberon def: "A zone of thyroid cartilage formed by fusion of the two plate-like laminae of the cartilages." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Thyroid_cartilage] synonym: "Adam's apple" EXACT [FMA:55304] synonym: "Adams apple" EXACT [] xref: BTO:0003656 xref: FMA:55304 xref: SCTID:362648003 relationship: part_of UBERON:0001738 ! thyroid cartilage [Term] id: UBERON:0034721 name: pharyngeal taste bud namespace: uberon def: "A taste bud that is located in the pharynx." [http://orcid.org/0000-0002-6601-2165] relationship: part_of UBERON:0000355 ! pharyngeal mucosa property_value: RO:0002175 NCBITaxon:7778 [Term] id: UBERON:0034937 name: pharyngeal bar namespace: uberon synonym: "branchial bar" RELATED [] synonym: "gill bar" RELATED [] relationship: part_of UBERON:0001042 ! chordate pharynx property_value: RO:0002161 NCBITaxon:7776 property_value: RO:0002175 NCBITaxon:117569 property_value: RO:0002175 NCBITaxon:7737 property_value: UBPROP:0000008 "Haikouella possessed a small number of pharyngeal bars that may have been composed of mucocartilage, as in modern lampreys (Holland and Chen, 2001). the pharyngeal bars of Haikouella were probably derived from neural crest, as were the sensory components of the cranial nerves that innervated its pharyngeal muscles[http://icb.oxfordjournals.org/content/42/4/743.full]" xsd:string [Term] id: UBERON:0035077 name: lateral nasal gland namespace: uberon def: "Any of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those described for the major serous salivary glands; secretory contents of the LNG drain into the nasal vestibule; the LNG is a major site for the synthesis and secretion of odorant-binding proteins that serve as odorant carriers in nasal mucus; it also, synthesizes large amounts of immunoglobulin A, which is important for immune defense of the upper respiratory tract, and testosterone and salivary androgen-binding proteins, which are likely important in olfaction and reproductive behavior" [MP:0013582] synonym: "glandula nasalis lateralis" EXACT LATIN [MP:0013582] synonym: "LNG" RELATED ABBREVIATION [MP:0013582] synonym: "Steno gland" EXACT [MP:0013582] synonym: "Steno's gland" EXACT [MP:0013582] xref: EMAPA:37894 {source="MA:th"} is_a: UBERON:0012278 ! gland of nasal mucosa [Term] id: UBERON:0035120 name: fauces namespace: uberon def: "lateral walls of the oropharynx that are located medial to the palatoglossal folds" [http://www.avdc.org/Nomenclature.pdf] xref: FMA:55019 xref: SCTID:361362001 relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0035228 name: tonsillar fossa namespace: uberon def: "Between the plica triangularis and the surface of the palatine tonsils is a space known as the tonsillar fossa (or tonsillar sinus); in many cases, however, this sinus is obliterated by its walls becoming adherent." [Wikipedia:Tonsillar_fossa] synonym: "tonsillar bed" EXACT [FMA:55041] synonym: "tonsillar sinus" EXACT [FMA:55041] xref: FMA:55041 xref: NCIT:C12235 xref: SCTID:362596009 xref: UMLS:C0229881 xref: Wikipedia:Tonsillar_fossa relationship: part_of UBERON:0002372 ! tonsil [Term] id: UBERON:0035240 name: posterior wall of oropharynx namespace: uberon xref: FMA:55032 xref: NCIT:C12240 xref: SCTID:276960004 xref: UMLS:C0227155 relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0035270 name: roof of nasopharynx namespace: uberon synonym: "nasopharynx roof" EXACT [FMA:54906] synonym: "pharyngeal fornix" EXACT [FMA:54906] synonym: "roof of nasal part of pharynx" EXACT [FMA:54906] synonym: "superior nasopharynx" EXACT [FMA:54906] synonym: "superior wall of nasopharynx" EXACT [FMA:54906] synonym: "vault of pharynx" EXACT [FMA:54906] xref: FMA:54906 xref: NCIT:C12242 xref: SCTID:179268001 xref: UMLS:C0225492 relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0035286 name: lateral wall of oropharynx namespace: uberon xref: FMA:55008 xref: NCIT:C12239 xref: SCTID:362125007 xref: UMLS:C0227156 relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0035313 name: posterior wall of laryngopharynx namespace: uberon synonym: "posterior wall of hypopharynx" EXACT [FMA:55063] xref: FMA:55063 xref: NCIT:C12249 xref: SCTID:276966005 xref: UMLS:C0227174 relationship: part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0035383 name: lateral wall of nasopharynx namespace: uberon synonym: "lateral nasopharynx" EXACT [FMA:54908] xref: FMA:54908 xref: NCIT:C12244 xref: SCTID:361937006 xref: UMLS:C0225486 relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0035401 name: posterior wall of nasopharynx namespace: uberon synonym: "posterior nasopharynx" EXACT [FMA:54907] xref: FMA:54907 xref: NCIT:C12243 xref: SCTID:361936002 xref: UMLS:C0225484 relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0035431 name: mediastinal pleura namespace: uberon def: "The parietal pleura that lines the mediastinum." [ncithesaurus:Mediastinal_Pleura] synonym: "mediastinal part of parietal pleura" EXACT [FMA:9736] synonym: "pars mediastinalis (pleurae)" EXACT [FMA:9736] synonym: "pars mediastinalis pleurae parietalis" EXACT LATIN [FMA:9736, FMA:TA] xref: FMA:9736 xref: NCIT:C94820 xref: SCTID:362002008 xref: UMLS:C0225789 xref: Wikipedia:Mediastinal_pleura relationship: part_of UBERON:0002400 {source="FMA"} ! parietal pleura [Term] id: UBERON:0035453 name: laryngeal ventricle namespace: uberon synonym: "ventricle of larynx" EXACT [FMA:64171] synonym: "ventricle of Morgagni" EXACT [FMA:64171] xref: FMA:64171 xref: NCIT:C32935 xref: SCTID:361949007 xref: UMLS:C0225566 relationship: part_of UBERON:0001737 {source="ncithesaurus"} ! larynx [Term] id: UBERON:0035468 name: costodiaphragmatic recess namespace: uberon def: "The angled junction where the diaphragm meets the chest wall." [ncithesaurus:Costophrenic_Angle] synonym: "costophrenic angle" EXACT [FMA:11355] xref: FMA:11355 xref: NCIT:C32393 xref: SCTID:46297007 xref: UMLS:C0230151 xref: Wikipedia:Costodiaphragmatic_recess relationship: part_of UBERON:0001103 {source="ncithesaurus"} ! diaphragm [Term] id: UBERON:0035767 name: intrapulmonary bronchus namespace: uberon xref: FMA:223208 xref: NCIT:C12930 xref: UMLS:C1512970 is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0035831 name: costal diaphragm namespace: uberon def: "The domain of the diaphragm that is a thin domed sheet of muscle composed of a radial array of myofibers extending laterally from the ribs and medially to a central tendon." [PMID:23586979] synonym: "costal part of diaphragm" EXACT [FMA:58277] synonym: "pars costalis diaphragmatis" EXACT LATIN [FMA:TA] xref: FMA:58277 xref: SCTID:368048007 relationship: part_of UBERON:0001103 {source="PMID:23586979"} ! diaphragm [Term] id: UBERON:0035963 name: epithelial lining fluid namespace: uberon def: "Epithelial lining fluid forms a thin fluid layer that covers the mucosa of the alveoli, the small airways, and the large airways." [BTO:0005566, PMID:21948403] synonym: "ELF" RELATED [BTO:0005566] xref: BTO:0005566 xref: FMA:276456 relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0036068 name: subglottis namespace: uberon def: "The lower portion of the larynx, extending from just beneath the vocal cords down to the top of the trachea." [MP:0030000, ORCID:orcid.org/0000-0002-6490-7723, Wikipedia:Subglottis] synonym: "infraglottic part of larynx" EXACT [FMA:55477] synonym: "subglottic larynx" EXACT [FMA:55477] synonym: "subglottic region" EXACT [MP:0030000] xref: EMAPA:37969 {source="MA:th"} xref: FMA:55477 xref: NCIT:C12280 xref: SCTID:281511009 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: part_of UBERON:0001737 ! larynx property_value: UBPROP:0000009 "the structures in the subglottis are implicated in the regulation of the temperature of the breath" xsd:string [Term] id: UBERON:0036071 name: diaphragmaticus muscle namespace: uberon def: "A skeletal muscle found in crocodilians that is analogous to the diaphragm of mammals" [https://github.com/obophenotype/uberon/issues/1229, PMID:22323207] synonym: "diaphragmaticus" RELATED [] is_a: UBERON:0003831 ! respiratory system muscle relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0036225 name: respiratory system gland namespace: uberon def: "Any gland that is part os the respiratory system." [UBERON:cjm] relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0036263 name: supraglottic part of larynx namespace: uberon def: "The upper part of the larynx, including the epiglottis; the area above the vocal cords." [NCIT:C12279] synonym: "supraglottic larynx" EXACT [FMA:55476] synonym: "supraglottis" EXACT [NCIT:C12279] xref: FMA:55476 xref: NCIT:C12279 xref: SCTID:361953009 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: part_of UBERON:0001737 {source="FMA"} ! larynx [Term] id: UBERON:0036274 name: tonsillar pillar namespace: uberon def: "The anterior and posterior borders of the tonsillar fossa. They are composed of muscle tissue." [NCIT:C12236] comment: Consider merge with palatopharyngeus xref: NCIT:C12236 relationship: part_of UBERON:0002372 {source="NCIT"} ! tonsil [Term] id: UBERON:0038897 name: superior tracheobronchial lymph node namespace: uberon synonym: "4 thoracic lymph node" EXACT [FMA:5959] synonym: "4R+L thoracic lymph node" EXACT [FMA:5959] synonym: "lower paratracheal lymph node" EXACT [FMA:5959] synonym: "nodus tracheobronchiale superiore lymphaticus" EXACT [FMA:5959] synonym: "station 4 lymph node" EXACT [FMA:5959] synonym: "station 4 N2 lymph node" EXACT [FMA:5959] xref: FMA:5959 is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node [Term] id: UBERON:0038900 name: inferior tracheobronchial lymph node namespace: uberon synonym: "carinate lymph node" EXACT [FMA:5962] synonym: "nodus tracheobronchialis inferioris lymphaticus" EXACT [FMA:5962] xref: FMA:5962 is_a: UBERON:0015472 {source="FMA"} ! tracheobronchial lymph node [Term] id: UBERON:2000202 name: efferent portion of pharyngeal arch artery namespace: uberon def: "A section of a pharyngeal arch artery that carries blood away from the gills." [ISBN:0073040584] synonym: "efferent branchial artery" EXACT [ZFA:0000202] synonym: "efferent portion of branchial artery" EXACT [] xref: TAO:0000202 xref: ZFA:0000202 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0004363 ! pharyngeal arch artery [Term] id: UBERON:2000211 name: gill lamella namespace: uberon synonym: "gill lamellae" EXACT PLURAL [TAO:0000211] xref: ZFA:0000211 relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000319 name: branchiostegal membrane namespace: uberon xref: ZFA:0000319 relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000666 name: filamental artery namespace: uberon synonym: "filamental arteries" EXACT PLURAL [TAO:0000666] xref: ZFA:0000666 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0007303 ! pharyngeal vasculature relationship: part_of UBERON:0009120 ! gill filament property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000716 name: afferent portion of pharyngeal arch artery namespace: uberon def: "A section of a pharyngeal arch artery that delivers blood to the gills." [ISBN:0073040584] synonym: "afferent branchial artery" EXACT [ZFA:0000716] synonym: "afferent portion of branchial artery" EXACT [] xref: TAO:0000716 xref: ZFA:0000716 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0004363 ! pharyngeal arch artery property_value: UBPROP:0000001 "Artery that is part of the pharyngeal arches 3-5, and forms the afferent portion of a loop off of the aortic arch[ZFA]." xsd:string {source="ZFA:0000716"} [Term] id: UBERON:2001467 name: pharyngeal mesoderm namespace: uberon xref: ZFA:0001467 relationship: part_of UBERON:0001042 ! chordate pharynx property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001857 name: hyoidean artery namespace: uberon def: "An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch." [TAO:wd] is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001990 name: epibranchial arborescent organ namespace: uberon def: "Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired." [TAO:wd] comment: Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. synonym: "suprabranchial organ" EXACT [TAO:0001990] relationship: part_of UBERON:0001042 ! chordate pharynx property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2002057 name: gill opening namespace: uberon def: "Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head." [TAO:wd] comment: In teleosts, there is typically a single gill opening posterior to the operculum. synonym: "branchial aperture" EXACT [TAO:0002057] synonym: "branchial opening" EXACT [TAO:0002057] synonym: "gill aperture" EXACT [TAO:0002057] synonym: "opercular opening" EXACT [TAO:0002057] xref: ZFA:0005389 relationship: part_of UBERON:0001042 ! chordate pharynx property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2002116 name: epibranchial organ namespace: uberon relationship: part_of UBERON:0001042 ! chordate pharynx property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005012 name: afferent filamental artery namespace: uberon synonym: "AFA" EXACT [TAO:0005012] synonym: "afferent filamental arteries" EXACT PLURAL [TAO:0005012] xref: ZFA:0005012 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000666 ! filamental artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005013 name: concurrent branch afferent branchial artery namespace: uberon def: "The branch of the afferent branchial artery that continues posteriodorsally. Isogai et al. 2001." [ZFIN:curator] synonym: "CCB" EXACT [TAO:0005013] xref: ZFA:0005013 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005014 name: recurrent branch afferent branchial artery namespace: uberon def: "The anterioventral proceeding branch of the afferent branchial artery. Isogai et al. 2001." [ZFIN:curator] synonym: "RCB" EXACT [TAO:0005014] synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL [TAO:0005014] xref: ZFA:0005014 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005015 name: afferent lamellar arteriole namespace: uberon synonym: "afferent lamellar arterioles" EXACT PLURAL [TAO:0005015] synonym: "AFL" EXACT [TAO:0005015] xref: ZFA:0005015 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005012 ! afferent filamental artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005018 name: efferent filamental artery namespace: uberon synonym: "EFA" EXACT [TAO:0005018] xref: ZFA:0005018 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000202 ! efferent portion of pharyngeal arch artery relationship: part_of UBERON:2000666 ! filamental artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005019 name: efferent lamellar arteriole namespace: uberon synonym: "efferent lamellar arterioles" EXACT PLURAL [TAO:0005019] synonym: "ELA" EXACT [TAO:0005019] xref: ZFA:0005019 is_a: UBERON:0003469 ! respiratory system artery relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005018 ! efferent filamental artery property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:3000085 name: cavum inferius namespace: uberon def: "Accessory cavity located ventral to the cavum principale and cavum medius." [AAO:LAP] is_a: UBERON:0001707 ! nasal cavity property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000086 name: cavum internasale namespace: uberon is_a: UBERON:0001707 ! nasal cavity property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000087 name: cavum medius namespace: uberon def: "Small accessory cavity located between the cavum principale and cavum inferius." [AAO:LAP] is_a: UBERON:0001707 ! nasal cavity property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000088 name: cavum praenasale namespace: uberon is_a: UBERON:0001707 ! nasal cavity property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000089 name: cavum principale namespace: uberon def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:LAP] {comment="AAO:EJS"} is_a: UBERON:0001707 ! nasal cavity property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000676 name: bronchial process namespace: uberon def: "Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring." [AAO:LAP] synonym: "processus trachealis" RELATED [UBERON:3000676] relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000677 name: lateral process of cricoid cartilage namespace: uberon synonym: "lateral process" BROAD [] relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000678 name: esophageal process namespace: uberon def: "Median process located on the posterior end of the cricoid cartilage." [AAO:LAP] synonym: "spina oesophagea" RELATED [UBERON:3000678] relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000688 name: prominentia apicalis dorsalis namespace: uberon def: "Anterior end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis anterior" RELATED [UBERON:3000688] relationship: part_of UBERON:0001740 ! arytenoid cartilage property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000689 name: prominentia apicalis ventralis namespace: uberon def: "Posterior (cardiac) end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis posterior" RELATED [UBERON:3000689] relationship: part_of UBERON:0001740 ! arytenoid cartilage property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000948 name: articular process namespace: uberon def: "Paired processes located on the anterior end of the cricoid cartilage." [AAO:LAP] synonym: "processus articularis anterior" RELATED [UBERON:3000948] relationship: part_of UBERON:0002375 ! cricoid cartilage property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010197 name: lateral recess namespace: uberon def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS] relationship: part_of UBERON:0001707 ! nasal cavity property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010200 name: vasculature of respiratory integument namespace: uberon def: "Blood vessels in respiratory skin." [AAO:EJS] is_a: UBERON:0003504 ! respiratory system blood vessel relationship: part_of UBERON:0001004 ! respiratory system property_value: IAO:0000116 "Modified from the original AAO source" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010524 name: bronchial tube namespace: uberon def: "Either of the short tubes which bifurcate posteriorly from the trachea and lead into the lungs." [AAO:BJB] relationship: part_of UBERON:0001004 ! respiratory system property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010613 name: laryngo-tracheal chamber namespace: uberon def: "Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid." [AAO:BMZ] relationship: part_of UBERON:0001737 ! larynx created_by: amphibian_anatomy_curators [Term] id: UBERON:6005054 name: insect spiracle namespace: uberon def: "Opening of the tracheal system on the surface of the body." [FlyBase:FBrf0166419] xref: FBbt:00005054 relationship: part_of UBERON:0005155 ! open tracheal system [Term] id: UBERON:8410043 name: bronchus submucosal gland namespace: uberon def: "A submucosal gland located in a bronchus." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] synonym: "airway submucosal gland" BROAD [] synonym: "bronchial submucosal gland" EXACT [] synonym: "submucosal bronchial gland" EXACT [] synonym: "submucosal bronchus gland" EXACT [] xref: EFO:0010666 is_a: UBERON:0036225 ! respiratory system gland relationship: part_of UBERON:0002185 ! bronchus created_by: http://orcid.org/0000-0002-2825-0621 [Term] id: http://owltools.org/Q [Typedef] id: part_of name: part of name: part_of namespace: external namespace: protein namespace: quality namespace: uberon def: "a core relation that holds between a part and its whole" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam xref: BFO:0000050 property_value: IAO:0000111 "is part of" xsd:string property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 property_value: RO:0040042 BFO:0000002 property_value: RO:0040042 BFO:0000003 property_value: RO:0040042 BFO:0000004 property_value: RO:0040042 BFO:0000017 property_value: RO:0040042 BFO:0000019 property_value: RO:0040042 BFO:0000020 property_value: RO:0040042 BFO:0000031 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true