format-version: 1.2 ontology: uberon/subsets/sensory-minimal owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\n\n############################\n# Classes\n############################\n\n# Class: ()\n\nEquivalentClasses( ObjectSomeValuesFrom( ))\n\n# Class: (compound eye retinal cell)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: owl:Nothing (owl:Nothing)\n\nSubClassOf(owl:Nothing owl:Nothing)\n\n\n) [Term] id: BFO:0000002 name: continuant relationship: part_of BFO:0000002 ! continuant [Term] id: BFO:0000004 name: independent continuant is_a: BFO:0000002 ! continuant relationship: part_of BFO:0000004 ! independent continuant [Term] id: BFO:0000040 name: material entity is_a: BFO:0000004 ! independent continuant [Term] id: CARO:0000000 name: anatomical entity is_a: CARO:0030000 ! biological entity [Term] id: CARO:0030000 name: biological entity is_a: BFO:0000004 ! independent continuant [Term] id: CL:0000006 name: neuronal receptor cell namespace: cell synonym: "neuronal receptor cell (sensu Animalia)" EXACT [] is_a: CL:0000197 ! sensory receptor cell [Term] id: CL:0000098 name: sensory epithelial cell namespace: cell def: "A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells." [] comment: The term "neuroepithelial cell" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710). synonym: "neuroepithelial cell" BROAD [] xref: BTO:0004301 is_a: CL:0000197 ! sensory receptor cell [Term] id: CL:0000197 name: sensory receptor cell namespace: cell def: "A cell that is capable of detection of a stimulus involved in sensory perception." [] synonym: "receptor cell" EXACT [] relationship: part_of UBERON:0001032 ! sensory system [Term] id: CL:0000198 name: pain receptor cell namespace: cell def: "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings." [] comment: Editor note: request detection of stimulus involved in sensory perception of pain; add develops_from relationship synonym: "nociceptor" EXACT [] synonym: "nocireceptor" EXACT [] is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000202 name: auditory hair cell namespace: cell alt_id: CL:0000201 def: "A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [] comment: In mammals these cells are located in the organ of Corti. synonym: "auditory receptor cell" EXACT [] synonym: "cochlear hair cell" EXACT [] synonym: "inner ear hair cell" RELATED [] synonym: "inner ear receptor cell" RELATED [] xref: FMA:62364 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0002491 ! auditory epithelial cell relationship: part_of UBERON:0002227 ! spiral organ of cochlea [Term] id: CL:0000203 name: gravity sensitive cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000204 name: acceleration receptive cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000205 name: thermoreceptor cell namespace: cell def: "A cellular receptor which mediates the sense of temperature. Thermoreceptor cells in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain." [] is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000207 name: olfactory receptor cell namespace: cell synonym: "odorant receptor cell" EXACT [] synonym: "olfactory receptor neuron" EXACT [] synonym: "olfactory sensory neuron" EXACT [] synonym: "Schultze's cell" EXACT [] xref: BTO:0004185 xref: FMA:67860 xref: Wikipedia:Olfactory_receptor_neuron is_a: CL:0000006 ! neuronal receptor cell relationship: part_of UBERON:0005725 ! olfactory system [Term] id: CL:0000209 name: taste receptor cell namespace: cell def: "A cell type found in the spherical or ovoid clusters of receptor cells found mainly in the epithelium of the tongue and constituting the end organs of the sense of taste." [] synonym: "taste bud cell" EXACT [] xref: FMA:67910 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell [Term] id: CL:0000210 name: photoreceptor cell namespace: cell def: "A cell specialized to detect and transduce light." [] xref: BTO:0001060 xref: CALOHA:TS-0868 xref: FBbt:00004211 xref: FMA:86740 is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000287 name: eye photoreceptor cell namespace: cell is_a: CL:0000210 ! photoreceptor cell relationship: part_of UBERON:0000970 ! eye [Term] id: CL:0000347 name: scleral cell namespace: cell def: "A cell of the sclera of the eye." [] relationship: part_of UBERON:0001773 ! sclera [Term] id: CL:0000348 name: choroidal cell of the eye namespace: cell def: "A cell of the choroid of the eye." [] relationship: part_of UBERON:0001776 ! optic choroid [Term] id: CL:0000376 name: humidity receptor cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:0000488 name: visible light photoreceptor cell namespace: cell def: "A photoreceptor cell that detects visible light." [] is_a: CL:0000210 ! photoreceptor cell [Term] id: CL:0000489 name: scotopic photoreceptor cell namespace: cell is_a: CL:0000210 ! photoreceptor cell [Term] id: CL:0000490 name: photopic photoreceptor cell namespace: cell is_a: CL:0000488 ! visible light photoreceptor cell [Term] id: CL:0000494 name: UV sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that detects ultraviolet light." [] is_a: CL:0000210 ! photoreceptor cell [Term] id: CL:0000495 name: blue sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that is sensitive to blue light." [] is_a: CL:0000490 ! photopic photoreceptor cell [Term] id: CL:0000496 name: green sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that is sensitive to green light." [] is_a: CL:0000490 ! photopic photoreceptor cell [Term] id: CL:0000497 name: red sensitive photoreceptor cell namespace: cell def: "A photoreceptor cell that is sensitive to red light." [] is_a: CL:0000490 ! photopic photoreceptor cell [Term] id: CL:0000551 name: unimodal nocireceptor namespace: cell is_a: CL:0000198 ! pain receptor cell [Term] id: CL:0000567 name: polymodal nocireceptor namespace: cell is_a: CL:0000198 ! pain receptor cell [Term] id: CL:0000573 name: retinal cone cell namespace: cell def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." [] xref: BTO:0001036 xref: CALOHA:TS-0866 xref: FMA:67748 is_a: CL:0010009 ! camera-type eye photoreceptor cell [Term] id: CL:0000575 name: corneal epithelial cell namespace: cell alt_id: CL:1000431 def: "An epithelial cell of the cornea." [] synonym: "epithelial cell of cornea" EXACT [] xref: BTO:0004298 xref: CALOHA:TS-0173 xref: FMA:70551 relationship: part_of UBERON:0000964 ! cornea [Term] id: CL:0000587 name: cold sensing thermoreceptor cell namespace: cell def: "A thermoreceptor cell that detects reduced temperatures." [] is_a: CL:0000205 ! thermoreceptor cell [Term] id: CL:0000589 name: cochlear inner hair cell namespace: cell def: "A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated." [] synonym: "inner hair cell" BROAD [] xref: BTO:0003667 xref: FMA:62365 is_a: CL:0000202 ! auditory hair cell [Term] id: CL:0000591 name: warmth sensing thermoreceptor cell namespace: cell def: "A thermoreceptor cell that detects increased temperatures." [] is_a: CL:0000205 ! thermoreceptor cell [Term] id: CL:0000601 name: outer hair cell namespace: cell def: "A mechanoreceptor in the organ of Corti. In mammals the outer hair cells are arranged in three rows which are further from the modiolus than the single row of inner hair cells. The motile properties of the outer hair cells may contribute actively to tuning the sensitivity and frequency selectivity of the cochlea." [] synonym: "cochlear outer hair cell" EXACT [] xref: BTO:0003666 xref: FMA:62366 is_a: CL:0000202 ! auditory hair cell [Term] id: CL:0000602 name: pressoreceptor cell namespace: cell def: "A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls." [] is_a: CL:1000082 ! stretch receptor cell [Term] id: CL:0000604 name: retinal rod cell namespace: cell def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." [] xref: BTO:0001024 xref: CALOHA:TS-0870 xref: FMA:67747 is_a: CL:0010009 ! camera-type eye photoreceptor cell [Term] id: CL:0000633 name: Hensen cell namespace: cell def: "A tall supporting cell that is arranged in rows adjacent to the last row of outer phalangeal cells. This cell type constitutes the outer border of the organ of Corti." [] synonym: "cell of Hensen" EXACT [] synonym: "external limiting cell of organ of Corti" EXACT [] synonym: "Hensen's cell" EXACT [] xref: FMA:79799 is_a: CL:0002490 ! organ of Corti supporting cell [Term] id: CL:0000634 name: Claudius cell namespace: cell def: "A cuboidal cell which along with Boettcher's cells form the floor of the external spiral sulcus, external to the organ of Corti." [] synonym: "cell of Claudius" EXACT [] synonym: "external supporting cell of Claudius" RELATED [] synonym: "external supporting cell of vestibular epithelium" EXACT [] xref: FMA:79802 is_a: CL:0002315 ! supporting cell of cochlea [Term] id: CL:0000635 name: Deiter's cell namespace: cell def: "The outer phalangeal cells of the organ of Corti. This cell holds the base of the hair cell in a cup-shaped depression." [] synonym: "Deiters cell" EXACT [] synonym: "outer phalangeal cell" EXACT [] xref: FMA:75725 is_a: CL:0002165 ! phalangeal cell [Term] id: CL:0000687 name: R1 photoreceptor cell namespace: cell synonym: "R1 cell" EXACT [] is_a: CL:0000488 ! visible light photoreceptor cell is_a: CL:2000019 ! compound eye photoreceptor cell relationship: part_of UBERON:0000971 ! ommatidium [Term] id: CL:0000690 name: R2 photoreceptor cell namespace: cell synonym: "R2 cell" EXACT [] is_a: CL:0000488 ! visible light photoreceptor cell is_a: CL:2000019 ! compound eye photoreceptor cell relationship: part_of UBERON:0000971 ! ommatidium [Term] id: CL:0000694 name: R3 photoreceptor cell namespace: cell synonym: "R3 cell" EXACT [] is_a: CL:0000488 ! visible light photoreceptor cell is_a: CL:2000019 ! compound eye photoreceptor cell relationship: part_of UBERON:0000971 ! ommatidium [Term] id: CL:0000697 name: R4 photoreceptor cell namespace: cell synonym: "R4 cell" EXACT [] is_a: CL:0000488 ! visible light photoreceptor cell is_a: CL:2000019 ! compound eye photoreceptor cell relationship: part_of UBERON:0000971 ! ommatidium [Term] id: CL:0000702 name: R5 photoreceptor cell namespace: cell synonym: "R5 cell" EXACT [] is_a: CL:0000488 ! visible light photoreceptor cell is_a: CL:2000019 ! compound eye photoreceptor cell relationship: part_of UBERON:0000971 ! ommatidium [Term] id: CL:0000705 name: R6 photoreceptor cell namespace: cell synonym: "R6 cell" EXACT [] is_a: CL:0000488 ! visible light photoreceptor cell is_a: CL:2000019 ! compound eye photoreceptor cell relationship: part_of UBERON:0000971 ! ommatidium [Term] id: CL:0000707 name: R7 photoreceptor cell namespace: cell synonym: "R7 cell" EXACT [] is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0000494 ! UV sensitive photoreceptor cell [Term] id: CL:0000709 name: R8 photoreceptor cell namespace: cell synonym: "R8 cell" EXACT [] is_a: CL:0000488 ! visible light photoreceptor cell is_a: CL:2000019 ! compound eye photoreceptor cell relationship: part_of UBERON:0000971 ! ommatidium [Term] id: CL:0000718 name: compound eye cone cell namespace: cell synonym: "cone cell (sensu Endopterygota)" RELATED [] relationship: part_of UBERON:0000018 ! compound eye [Term] id: CL:0000719 name: posterior cone cell (sensu Endopterygota) namespace: cell is_a: CL:0000718 ! compound eye cone cell [Term] id: CL:0000720 name: anterior cone cell (sensu Endopterygota) namespace: cell is_a: CL:0000718 ! compound eye cone cell [Term] id: CL:0000721 name: equatorial cone cell (sensu Endopterygota) namespace: cell is_a: CL:0000718 ! compound eye cone cell [Term] id: CL:0000740 name: retinal ganglion cell namespace: cell def: "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve." [] synonym: "gangliocyte" EXACT [] synonym: "ganglion cell of retina" EXACT [] synonym: "RGC" EXACT [] xref: BTO:0001800 xref: FMA:67765 is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina [Term] id: CL:0000745 name: retina horizontal cell namespace: cell def: "A neuron that laterally connects other neurons in the inner nuclear layer of the retina." [] synonym: "horizontal cell" EXACT [] xref: BTO:0004120 is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: CL:0000748 name: retinal bipolar neuron def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer." [] is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina [Term] id: CL:0000749 name: ON-bipolar cell namespace: cell def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors." [] is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000750 name: OFF-bipolar cell namespace: cell def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells depolatize in response to light to dark transition." [] is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000751 name: rod bipolar cell namespace: cell def: "A bipolar neuron found in the retina that is synapsed by rod photoreceptor cells but not by cone photoreceptor cells. These neurons depolarize in response to light." [] xref: FMA:67750 is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000752 name: cone retinal bipolar cell namespace: cell def: "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer." [] is_a: CL:0000748 ! retinal bipolar neuron [Term] id: CL:0000753 name: type 1 cone bipolar cell (sensu Mus) def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell body of these cells is in the middle of the inner plexiform layer. The dendritic tree is stout and the axon terminates in sublamina 1. The axonal terminal is wide and has only a few varicosities." [] synonym: "DB1 cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000754 name: type 2 cone bipolar cell (sensu Mus) namespace: cell def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is not well filled and the dendrites are more delicate than in type 1 cells. The axon terminal is bushier and exhibits a dense plexus of varicosities in the inner part of sublamina 1 (Ghosh et al., 2004). It can be differentiated from other retinal bipolar neurons by its expression of marker genes: Neto1, Lhx3 and Irx-6 (Shekhar, 2016)." [] synonym: "FMB cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000755 name: type 3 cone bipolar cell (sensu Mus) namespace: cell def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is delicate and the dendritic tips appear small when compared with type 1 cells. The axon terminal is stratified and restricted to sublamina 2 of the inner plexiform layer." [] synonym: "DB2 cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000756 name: type 4 cone bipolar cell (sensu Mus) namespace: cell def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell has a diffuse axon terminal with varicosities in sublaminae 1 and 2 of the inner plexiform layer." [] synonym: "DB3 cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000757 name: type 5 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is restricted to sublamina 3 of the inner plexiform layer. It is narrowly stratified and branched. The dendritic tree has many delicate branches." [] synonym: "DB4 cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000758 name: type 6 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The cell has a loose, delicate axon terminal that opens in sublamina 3 of the inner plexiform layer and descends into sublamina 4." [] synonym: "DB5 cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000759 name: type 7 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is narrowly stratified and are found just below a calretinin-expressing band in sublamina 4 of the inner plexiform layer." [] synonym: "IMB cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000760 name: type 8 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. This cell has the widest dendritic field and the widest axon terminal of all retinal bipolar cells. The axon terminal is delicate and stratified through sublaminae 4 and 5 of the inner plexiform layer." [] synonym: "DB6 cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000761 name: type 9 cone bipolar cell (sensu Mus) namespace: cell def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The dendritic tree is wide and the dendritic convergence indicates cone selectivity. The axon terminal is sparsely branched and terminates in sublamina 5 of the inner plexiform layer." [] synonym: "BB cone bipolar cell" EXACT [] is_a: CL:0000752 ! cone retinal bipolar cell [Term] id: CL:0000847 name: ciliated olfactory receptor neuron namespace: cell def: "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob." [] synonym: "ciliated olfactory sensory neuron" EXACT [] synonym: "ciliated sensory neuron" EXACT [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000848 name: microvillous olfactory receptor neuron namespace: cell def: "An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli." [] synonym: "microvillous olfactory sensory neuron" EXACT [] synonym: "microvillous sensory neuron" RELATED [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000849 name: crypt olfactory receptor neuron namespace: cell def: "An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli." [] synonym: "crypt cell" EXACT [] synonym: "crypt olfactory sensory neuron" EXACT [] synonym: "crypt sensory neuron" EXACT [] is_a: CL:0000207 ! olfactory receptor cell [Term] id: CL:0000851 name: neuromast mantle cell namespace: cell def: "Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded." [] relationship: part_of UBERON:0008904 ! neuromast [Term] id: CL:0000852 name: neuromast support cell namespace: cell def: "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells." [] relationship: part_of UBERON:0008904 ! neuromast [Term] id: CL:0000853 name: olfactory epithelial support cell namespace: cell def: "Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons." [] synonym: "olfactory sustentacular cell" EXACT [] synonym: "supporting cell of olfactory epithelium" EXACT [] synonym: "sustentaculocyte of olfactory epithelium" EXACT [] xref: FMA:62302 is_a: CL:0002169 ! basal cell of olfactory epithelium [Term] id: CL:0000856 name: neuromast hair cell namespace: cell def: "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." [] is_a: CL:0000006 ! neuronal receptor cell relationship: part_of UBERON:0008904 ! neuromast [Term] id: CL:0002084 name: Boettcher cell namespace: cell def: "A Boettcher cell is a polyhedral cells on the basilar membrane of the cochlea, and is located beneath Claudius cells. A Boettcher cell is considered a supporting cell for the organ of Corti, and is present only in the lower turn of the cochlea. These cells interweave with each other, and project microvilli into the intercellular space. Because of their structural specialization, a Boettcher cell is believed to play a significant role in the function of the cochlea. They demonstrate high levels of calmodulin, and may be involved in mediating Ca(2+) regulation and ion transport." [] synonym: "Boettcher's cell" EXACT [] synonym: "Bottcher cell" EXACT [] synonym: "Bottcher's cell" EXACT [] is_a: CL:0002315 ! supporting cell of cochlea created_by: tmeehan creation_date: 2010-07-14T03:22:02Z [Term] id: CL:0002162 name: internal epithelial cell of tympanic membrane namespace: cell def: "An extremely flattened cell type found on the inner side of the tympanic membrane. The surface of this cell type carries sparse pleomorphic microvilli that are more common near the junctional zones." [] xref: FMA:70626 relationship: part_of UBERON:0002364 ! tympanic membrane created_by: tmeehan creation_date: 2010-08-25T10:49:46Z [Term] id: CL:0002163 name: internal pillar cell of cochlea namespace: cell def: "A rod-shpaed cell that forms a single row adjacent to and supporting the inner hair cells." [] xref: FMA:75722 xref: FMA:75726 is_a: CL:1000191 ! pillar cell created_by: tmeehan creation_date: 2010-08-25T11:05:21Z [Term] id: CL:0002164 name: external pillar cell of cochlea namespace: cell def: "A rod-shaped cell found in 3 or 4 rows that lie adjacent to and support the outer hair cells." [] xref: FMA:75727 is_a: CL:1000191 ! pillar cell created_by: tmeehan creation_date: 2010-08-25T11:05:23Z [Term] id: CL:0002165 name: phalangeal cell namespace: cell def: "A supporting cell that is attached to the basement membrane and forms rows that support the hair cells." [] xref: FMA:79800 is_a: CL:0002490 ! organ of Corti supporting cell created_by: tmeehan creation_date: 2010-08-25T01:29:07Z [Term] id: CL:0002167 name: olfactory epithelial cell namespace: cell def: "A specialized cell involved in sensory perception of smell." [] xref: FMA:67870 is_a: CL:0000098 ! sensory epithelial cell created_by: tmeehan creation_date: 2010-08-26T01:47:13Z [Term] id: CL:0002168 name: border cell of cochlea namespace: cell def: "A border cell is a slender columnar cell on the medial portion of the basilar membrane." [] xref: FMA:79798 is_a: CL:0002315 ! supporting cell of cochlea created_by: tmeehan creation_date: 2010-08-25T01:47:12Z [Term] id: CL:0002169 name: basal cell of olfactory epithelium namespace: cell alt_id: CL:1000395 def: "An epithelial cell located on the basal lamina of the olfactory epithelium." [] synonym: "horizontal basal call" BROAD [] xref: FMA:62303 is_a: CL:0002167 ! olfactory epithelial cell relationship: part_of UBERON:0001997 ! olfactory epithelium created_by: tmeehan creation_date: 2010-08-26T01:58:54Z [Term] id: CL:0002171 name: globose cell of olfactory epithelium namespace: cell def: "A rounded or elliptical epithelial cell, with pale-staining open face nucleus and pale cytoplasm rich in free ribosomes and clusters of centrioles; form a distinct basal zone spaced slightly from the basal surface of the epithelium." [] synonym: "blastema cell of olfactory epithelium" EXACT [] xref: FMA:67874 is_a: CL:0002169 ! basal cell of olfactory epithelium created_by: tmeehan creation_date: 2010-08-26T01:59:18Z [Term] id: CL:0002172 name: interdental cell of cochlea namespace: cell def: "A long, spindle-shaped supporting cells arranged in parallel rows that secretes components of the tectorial membrane and potassium ions into the endolymph." [] synonym: "interdental cell" EXACT [] xref: FMA:79797 is_a: CL:0002315 ! supporting cell of cochlea relationship: part_of UBERON:0002276 ! lamina of spiral limbus created_by: tmeehan creation_date: 2010-08-25T02:02:48Z [Term] id: CL:0002184 name: basal proper cell of olfactory epithelium namespace: cell def: "A flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells; lie in contact with the basal lamina of olfactory epithelium." [] synonym: "horizontal basal cells" EXACT [] xref: FMA:62304 is_a: CL:0002169 ! basal cell of olfactory epithelium created_by: tmeehan creation_date: 2010-08-26T01:59:22Z [Term] id: CL:0002222 name: vertebrate lens cell namespace: cell def: "A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [] xref: FMA:70950 relationship: part_of UBERON:0000965 ! lens of camera-type eye created_by: tmeehan creation_date: 2010-09-07T10:38:03Z [Term] id: CL:0002223 name: anterior lens cell namespace: cell def: "A cell of the transparent layer of simple cuboidal epithelium over the anterior surface of the lens; transform into lens fiber(s)." [] xref: FMA:63181 is_a: CL:0002224 ! lens epithelial cell created_by: tmeehan creation_date: 2010-09-07T10:45:45Z [Term] id: CL:0002224 name: lens epithelial cell namespace: cell def: "A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth." [] xref: FMA:67559 is_a: CL:0002222 ! vertebrate lens cell relationship: part_of UBERON:0001803 ! epithelium of lens created_by: tmeehan creation_date: 2010-09-07T10:45:47Z [Term] id: CL:0002225 name: secondary lens fiber namespace: cell def: "A lens fiber cell that develops from primary lens fiber; located towards the center of lens; cell organelles are normally degraded or in the process of being degraded." [] synonym: "secondary lens fibre" EXACT [] is_a: CL:0011004 ! lens fiber cell created_by: tmeehan creation_date: 2010-09-07T10:53:39Z [Term] id: CL:0002226 name: non-nucleated secondary lens fiber namespace: cell def: "A secondary lens fiber cell that lacks a nucleus." [] synonym: "non-nucleated secondary lens fibre" EXACT [] xref: FMA:67561 is_a: CL:0002225 ! secondary lens fiber created_by: tmeehan creation_date: 2010-09-07T11:15:23Z [Term] id: CL:0002227 name: nucleated secondary lens fiber namespace: cell def: "A secondary fiber cell that contains a nucleus." [] synonym: "nucleated secondary lens fibre" EXACT [] xref: FMA:70949 is_a: CL:0002225 ! secondary lens fiber created_by: tmeehan creation_date: 2010-09-07T11:15:26Z [Term] id: CL:0002228 name: primary lens fiber namespace: cell def: "An elongating cell that rapidly obliterates the lumen of the lens vesicle. Subsequently, differentiation of this cell type at the lens equator leads to the formation of secondary fiber cells that come to overlie the primary fibers." [] synonym: "primary lens fibre" EXACT [] xref: FMA:70613 is_a: CL:0011004 ! lens fiber cell created_by: tmeehan creation_date: 2010-09-07T11:19:01Z [Term] id: CL:0002243 name: smooth muscle cell of sphincter of pupil namespace: cell def: "A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells." [] synonym: "smooth muscle fiber of sphincter of pupil" EXACT [] synonym: "smooth muscle fibre of sphincter of pupil" RELATED [] xref: FMA:70611 relationship: part_of UBERON:0001607 ! sphincter pupillae created_by: tmeehan creation_date: 2010-09-08T08:53:42Z [Term] id: CL:0002285 name: type III taste bud cell namespace: cell def: "A taste receptor cell that is characterized by morphologically identifiable synaptic contacts with the gustatory nerve fibers and expression of the synaptic membrane protein-25 (SNAP-25) and NCAM." [] synonym: "taste bud basal cell" BROAD [] synonym: "type 3 taste cell" EXACT [] xref: FMA:67940 is_a: CL:0000209 ! taste receptor cell created_by: tmeehan creation_date: 2010-09-13T10:57:21Z [Term] id: CL:0002286 name: type II taste cell namespace: cell def: "A taste receptor cell that has a short microvilli, a projecting apical region, a large rounded nucleus, and expresses taste chemoreceptors thus making them the transducing cell for taste qualities." [] synonym: "type 2 taste cell" EXACT [] xref: FMA:62381 is_a: CL:0000209 ! taste receptor cell created_by: tmeehan creation_date: 2010-09-13T10:57:26Z [Term] id: CL:0002287 name: type IV taste receptor cell namespace: cell def: "A rounded, mitotically active stem cell which is the source of new cells of the taste bud; located basally." [] comment: There is debate about the exact lineage of these cell types from this progenitor. See PMID:15738192. synonym: "taste bud basal cell" BROAD [] synonym: "type 4 taste cell" EXACT [] xref: FMA:62380 is_a: CL:0000209 ! taste receptor cell created_by: tmeehan creation_date: 2010-09-13T10:57:29Z [Term] id: CL:0002288 name: type V taste receptor cell namespace: cell def: "A cell type that forms the boundary with the surrounding epithelium." [] xref: FMA:67941 is_a: CL:0000209 ! taste receptor cell created_by: tmeehan creation_date: 2010-09-13T10:57:31Z [Term] id: CL:0002289 name: type I taste bud cell namespace: cell def: "A densely staining taste receptor cell that contains many dense vacuoles in their apical regions which project into the apical space and bear microvilli. This cell type serves as a supporting cell by surrounding and isolating the other cell types from each other; secrete a dense amorphous material that surrounds the microvilli in the taste pore. This cell type expresses a glial glutumate transporter, GLAST." [] synonym: "dark tongue cell" EXACT [] synonym: "type I taste cell" EXACT [] synonym: "type taste 1 cell" EXACT [] xref: FMA:62356 is_a: CL:0000209 ! taste receptor cell created_by: tmeehan creation_date: 2010-09-13T10:57:35Z [Term] id: CL:0002314 name: external supporting cell of vestibular epithelium namespace: cell def: "An auditory epithelial support cell located in the vestibular epithelium that has many hallmarks of glial cells. This cell type express glial markers such as vimentin, S100, glutamate-aspartate transporter, low affinity neurotrophin receptor p75, glial fibrillary acidic protein, and proteolipid protein." [] xref: FMA:75809 is_a: CL:0002316 ! supporting cell of vestibular epithelium created_by: tmeehan creation_date: 2010-09-14T03:20:01Z [Term] id: CL:0002315 name: supporting cell of cochlea namespace: cell def: "An epithelial supporting cell located in the cochlea." [] xref: FMA:79796 is_a: CL:0005014 ! auditory epithelial support cell relationship: part_of UBERON:0001844 ! cochlea created_by: tmeehan creation_date: 2010-09-14T03:31:38Z [Term] id: CL:0002316 name: supporting cell of vestibular epithelium namespace: cell def: "A supporting cell of the vestibular epithelium." [] xref: FMA:75607 is_a: CL:0005014 ! auditory epithelial support cell relationship: part_of UBERON:0001862 ! vestibular labyrinth created_by: tmeehan creation_date: 2010-09-14T03:31:44Z [Term] id: CL:0002317 name: external limiting cell of vestibular epithelium namespace: cell def: "An external limiting cell found in the vestibular epithelium." [] xref: FMA:75808 is_a: CL:0002316 ! supporting cell of vestibular epithelium created_by: tmeehan creation_date: 2010-09-14T03:33:50Z [Term] id: CL:0002363 name: keratocyte namespace: cell def: "A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate." [] synonym: "corneal fibroblast" EXACT [] synonym: "corneal keratocyte" EXACT [] relationship: part_of UBERON:0001777 ! substantia propria of cornea created_by: tmeehan creation_date: 2010-09-22T01:57:40Z [Term] id: CL:0002367 name: trabecular meshwork cell namespace: cell def: "A cell that lines the trabecular meshwork, which is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." [] synonym: "trabeculocyte" EXACT [] relationship: part_of UBERON:0005969 ! eye trabecular meshwork created_by: tmeehan creation_date: 2010-09-23T04:18:50Z [Term] id: CL:0002480 name: nasal mucosa goblet cell namespace: cell def: "A goblet cell located in the nasal epithelium." [] xref: MP:0002262 relationship: part_of UBERON:0005384 ! nasal cavity epithelium created_by: tmeehan creation_date: 2010-12-03T03:03:02Z [Term] id: CL:0002485 name: retinal melanocyte namespace: cell def: "A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium." [] relationship: part_of UBERON:0000966 ! retina created_by: tmeehan creation_date: 2010-12-03T03:25:32Z [Term] id: CL:0002486 name: strial intermediate cell namespace: cell def: "A melanocyte located between the epithelial marginal cell layer and the mesodermal basal cell layer within the intrastrial space; the predominant cellular component of the electrogenic machinery that generates an endocochlear potential (80-100 mV) ." [] is_a: CL:0002491 ! auditory epithelial cell relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct created_by: tmeehan creation_date: 2010-12-03T03:29:15Z [Term] id: CL:0002490 name: organ of Corti supporting cell namespace: cell def: "A supporting cell of the organ of Corti." [] is_a: CL:0002315 ! supporting cell of cochlea relationship: part_of UBERON:0002227 ! spiral organ of cochlea created_by: tmeehan creation_date: 2010-12-06T03:09:01Z [Term] id: CL:0002491 name: auditory epithelial cell namespace: cell def: "A specialized cell involved in auditory sensory perception." [] is_a: CL:0000098 ! sensory epithelial cell created_by: tmeehan creation_date: 2010-12-06T03:18:43Z [Term] id: CL:0002492 name: strial marginal cell namespace: cell def: "A polarized columnar cell that covesr the lateral surface of the cochlear duct, secretes potassium ions and forms a continuous sheet in contact with the endolymph; marginal cells form extensive interdigitations with the basal and intermediate cells in the normal adult stria." [] is_a: CL:0002491 ! auditory epithelial cell created_by: tmeehan creation_date: 2010-12-06T03:20:41Z [Term] id: CL:0002493 name: strial basal cell namespace: cell def: "A polarized cell that is juxtaposed to fibrocytes in the underlying spiral ligament. This cell type secretes potassium ions derived from fibrocytes through gap junctions." [] comment: Basal cells form a multi-layered epithelial barrier that separates the extracellular spaces of the stria vascularis and the spiral ligament[PMID:18353863] is_a: CL:0002491 ! auditory epithelial cell relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct created_by: tmeehan creation_date: 2010-12-06T03:26:53Z [Term] id: CL:0002550 name: fibroblast of the conjunctiva namespace: cell def: "A fibroblast that is part of the conjuctiva of the eye." [] relationship: part_of UBERON:0001811 ! conjunctiva created_by: tmeehan creation_date: 2011-02-28T05:03:44Z [Term] id: CL:0002565 name: iris pigment epithelial cell namespace: cell def: "A pigment cell located in the epithelium of the iris." [] relationship: part_of UBERON:0002506 ! iris epithelium created_by: tmeehan creation_date: 2011-03-01T05:28:52Z [Term] id: CL:0002585 name: retinal blood vessel endothelial cell namespace: cell def: "A blood vessel endothelial cell that is part of the retina." [] is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina created_by: tmeehan creation_date: 2011-03-06T03:28:27Z [Term] id: CL:0002586 name: retinal pigment epithelial cell namespace: cell def: "An epithelial cell of the retinal pigmented epithelium." [] xref: BTO:0004910 xref: FMA:75802 is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0001782 ! pigmented layer of retina created_by: tmeehan creation_date: 2011-03-06T03:37:09Z [Term] id: CL:0002665 name: otic fibrocyte namespace: cell def: "A fibrocyte of the cochlea that has specialized structural and molecular adaptions." [] relationship: part_of UBERON:0006725 ! spiral ligament created_by: tmeehan creation_date: 2011-07-11T03:35:01Z [Term] id: CL:0002666 name: type 2 otic fibrocyte namespace: cell def: "An otic fibrocyte that underlies the spiral prominence and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." [] synonym: "type II otic fibrocyte" EXACT [] synonym: "type II spiral ligament fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte created_by: tmeehan creation_date: 2011-07-11T03:40:40Z [Term] id: CL:0002667 name: type 5 otic fibrocyte namespace: cell def: "An otic fibrocyte that resides above the stria vasularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." [] synonym: "type V otic fibrocyte" EXACT [] synonym: "type V spiral ligament fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte created_by: tmeehan creation_date: 2011-07-11T03:40:42Z [Term] id: CL:0002668 name: type 4 otic fibrocyte namespace: cell def: "An otic fibrocyte that is lateral to the basilar membrane and anchoris it to the lateral wall." [] synonym: "type IV otic fibrocyte" EXACT [] synonym: "type IV spiral ligament fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte created_by: tmeehan creation_date: 2011-07-11T03:40:46Z [Term] id: CL:0002669 name: type 3 otic fibrocyte namespace: cell def: "An otic fibrocyte that lines the otic capsule." [] synonym: "type III otic fibrocyte" EXACT [] synonym: "type III spiral ligament fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte created_by: tmeehan creation_date: 2011-07-11T03:40:50Z [Term] id: CL:0002670 name: type 1 otic fibrocyte namespace: cell def: "An otic fibrocyte that underlies the stria vascularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." [] synonym: "type I otic fibrocyte" EXACT [] synonym: "type I spiral ligament fibrocyte" EXACT [] is_a: CL:0002665 ! otic fibrocyte created_by: tmeehan creation_date: 2011-07-11T03:39:27Z [Term] id: CL:0005008 name: macular hair cell namespace: cell def: "An auditory hair cell located in the macula that is sensitive to auditory stimuli." [] is_a: CL:0000202 ! auditory hair cell relationship: part_of UBERON:0000054 ! macula [Term] id: CL:0005014 name: auditory epithelial support cell namespace: cell def: "A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells." [] is_a: CL:0002491 ! auditory epithelial cell [Term] id: CL:0005015 name: inner phalangeal cell namespace: cell def: "An auditory epithelial support cell that surrounds the nerve fibers and synapses of the auditory inner hair cells." [] xref: FMA:79801 is_a: CL:0002165 ! phalangeal cell [Term] id: CL:0007017 name: Stiftchenzellen def: "An epidermal cell with apical microvilli or a single apical projection have synaptic associations with nerve fibres in the epidermis." [] comment: Taxon specificity not yet fully known, but are known in anuran larvae but not in adults. is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell created_by: haendel [Term] id: CL:0008021 name: anterior lateral line ganglion neuron is_a: CL:2000031 ! lateral line ganglion neuron relationship: part_of UBERON:2001391 ! anterior lateral line ganglion [Term] id: CL:0008027 name: rod bipolar cell (sensu Mus) def: "A bipolar neuron found in the retina that is synapsed by rod photoreceptor cells. These neurons have axons that arborize and synapse to targets in inner plexiform layers 4 and 5 and depolarize in response to light." [] is_a: CL:0000751 ! rod bipolar cell created_by: dos creation_date: 2017-06-29T11:05:22Z [Term] id: CL:0009001 name: compound eye retinal cell def: "Any cell in the compound eye, a light sensing organ composed of ommatidia." [] xref: GOC:pr xref: PMID:12021768 [Term] id: CL:0009004 name: retinal cell namespace: cell def: "Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [] xref: PMID:10702418 relationship: part_of UBERON:0005388 ! photoreceptor array [Term] id: CL:0010009 name: camera-type eye photoreceptor cell synonym: "camera type eye photoreceptor cell" EXACT [] is_a: CL:0000287 ! eye photoreceptor cell relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: CL:0011004 name: lens fiber cell def: "A vetebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye." [] synonym: "lens fibre cell" EXACT [] is_a: CL:0002222 ! vertebrate lens cell [Term] id: CL:0011104 name: interplexiform cell def: "A type of interneuron in the retinal inner nuclear layer which\ncarries information from the inner plexiform layer and the outer\nplexiform layer." [] comment: Need to MIREOT retinal inner nuclear layer (part of) is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0001791 ! inner nuclear layer of retina [Term] id: CL:0011105 name: dopamanergic interplexiform cell def: "A type of interneuron in the retinal inner nuclear layer which\ncarries information from the inner plexiform layer and the outer\nplexiform layer, using dopamine." [] comment: This type of cell is found in Danio rerio. is_a: CL:0011104 ! interplexiform cell [Term] id: CL:0011106 name: GABAnergic interplexiform cell def: "A type of interneuron in the retinal inner nuclear layer which\ncarries information from the inner plexiform layer and the outer\nplexiform layer using GABA." [] comment: This type of cell is found in many mammals. is_a: CL:0011104 ! interplexiform cell [Term] id: CL:0011107 name: Muller cell def: "Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer." [] synonym: "Muller glia" EXACT [] synonym: "Müller cell" EXACT [] is_a: CL:0009004 ! retinal cell relationship: part_of UBERON:0000966 ! retina [Term] id: CL:0011113 name: spiral ganglion neuron def: "Neuron found in the spriral ganglion." [] relationship: part_of UBERON:0000395 ! cochlear ganglion [Term] id: CL:1000050 name: lateral line nerve glial cell relationship: part_of UBERON:0008906 ! lateral line nerve [Term] id: CL:1000082 name: stretch receptor cell namespace: cell is_a: CL:0000006 ! neuronal receptor cell [Term] id: CL:1000191 name: pillar cell namespace: cell def: "A rod-like cell in the inner ear, having their heads joined and their bases on the basilar membrane widely separated so as to form a spiral tunnel known as the tunnel of Corti." [] synonym: "cochlear pillar cell" RELATED [] synonym: "pillar cell of cochlea" EXACT [] synonym: "pillar cell of corti" EXACT [] synonym: "rod cell of Corti" EXACT [] xref: FMA:75722 is_a: CL:0002490 ! organ of Corti supporting cell [Term] id: CL:1000236 name: posterior lateral line nerve glial cell is_a: CL:1000050 ! lateral line nerve glial cell relationship: part_of UBERON:2000175 ! posterior lateral line nerve [Term] id: CL:1000239 name: anterior lateral line nerve glial cell is_a: CL:1000050 ! lateral line nerve glial cell relationship: part_of UBERON:2000425 ! anterior lateral line nerve [Term] id: CL:1000245 name: posterior lateral line ganglion neuron is_a: CL:2000031 ! lateral line ganglion neuron relationship: part_of UBERON:2001314 ! posterior lateral line ganglion [Term] id: CL:1000378 name: type 1 vestibular sensory cell of stato-acoustic epithelium namespace: cell def: "A type I vestibular sensory cell that is part of the stato-acoustic epithelium." [] xref: FMA:263186 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell [Term] id: CL:1000379 name: type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [] xref: FMA:263188 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell relationship: part_of UBERON:0003241 ! epithelium of utricle [Term] id: CL:1000380 name: type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [] xref: FMA:263190 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell relationship: part_of UBERON:0002212 ! macula of saccule of membranous labyrinth relationship: part_of UBERON:0003242 ! epithelium of saccule [Term] id: CL:1000381 name: type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [] xref: FMA:263192 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell relationship: part_of UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: CL:1000382 name: type 2 vestibular sensory cell of stato-acoustic epithelium namespace: cell def: "A type II vestibular sensory cell that is part of the stato-acoustic epithelium." [] xref: FMA:263194 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell [Term] id: CL:1000383 name: type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [] xref: FMA:263196 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell relationship: part_of UBERON:0003241 ! epithelium of utricle [Term] id: CL:1000384 name: type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [] xref: FMA:263198 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell relationship: part_of UBERON:0002212 ! macula of saccule of membranous labyrinth relationship: part_of UBERON:0003242 ! epithelium of saccule [Term] id: CL:1000385 name: type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [] xref: FMA:263200 is_a: CL:0000006 ! neuronal receptor cell is_a: CL:0000098 ! sensory epithelial cell relationship: part_of UBERON:0006935 ! crista ampullaris neuroepithelium [Term] id: CL:1000391 name: melanocyte of eyelid namespace: cell def: "A melanocyte that is part of the eyelid." [] synonym: "eyelid melanocyte" EXACT [] synonym: "sebaceous gland of wolff" EXACT [] xref: FMA:59175 relationship: part_of UBERON:0001711 ! eyelid [Term] id: CL:1000432 name: conjunctival epithelial cell namespace: cell def: "An epithelial cell that is part of the conjunctiva." [] synonym: "epithelial cell of conjunctiva" EXACT [] xref: FMA:70552 relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: CL:1000433 name: epithelial cell of lacrimal canaliculus namespace: cell def: "An epithelial cell that is part of the lacrimal canaliculus." [] xref: FMA:70553 relationship: part_of UBERON:0001770 ! lacrimal canaliculus [Term] id: CL:1000434 name: epithelial cell of external acoustic meatus namespace: cell def: "An epithelial cell that is part of the external acoustic meatus." [] xref: FMA:70555 relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: CL:1000435 name: epithelial cell of lacrimal duct namespace: cell def: "An epithelial cell that is part of the lacrimal duct." [] xref: FMA:70559 relationship: part_of UBERON:0001850 ! lacrimal drainage system [Term] id: CL:1000436 name: epithelial cell of lacrimal sac namespace: cell def: "An epithelial cell that is part of the lacrimal sac." [] xref: FMA:70560 relationship: part_of UBERON:0001351 ! lacrimal sac [Term] id: CL:1000437 name: epithelial cell of nasolacrimal duct namespace: cell def: "An epithelial cell that is part of the nasolacrimal duct." [] xref: FMA:70561 is_a: CL:1000435 ! epithelial cell of lacrimal duct relationship: part_of UBERON:0002392 ! nasolacrimal duct [Term] id: CL:1000443 name: ciliary muscle cell namespace: cell def: "A smooth muscle cell that is part of the ciliary body." [] synonym: "smooth muscle cell of ciliary body" EXACT [] xref: FMA:70610 relationship: part_of UBERON:0001775 ! ciliary body [Term] id: CL:1000444 name: mesothelial cell of anterior chamber of eye namespace: cell def: "A mesothelial cell that is part of the anterior chamber of eyeball." [] xref: FMA:70615 relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: CL:1000445 name: myoepithelial cell of dilator pupillae namespace: cell def: "A myoepithelial cell that is part of the dilatator pupillae." [] xref: FMA:70619 relationship: part_of UBERON:0001608 ! dilatator pupillae [Term] id: CL:1001561 name: vomeronasal sensory neuron namespace: cl def: "Chemosensitive cells that innervate the vomernasal organ epithelium and are responsible for receiving and transmitting pheromone signals." [] is_a: CL:0000006 ! neuronal receptor cell relationship: part_of UBERON:0002255 ! vomeronasal organ [Term] id: CL:2000019 name: compound eye photoreceptor cell namespace: cell def: "Any photoreceptor cell that is part of a compound eye." [] is_a: CL:0000287 ! eye photoreceptor cell relationship: part_of UBERON:0000018 ! compound eye created_by: TermGenie creation_date: 2014-06-24T23:16:45Z [Term] id: CL:2000031 name: lateral line ganglion neuron namespace: cell def: "Any neuron that is part of a lateral line ganglion." [] relationship: part_of UBERON:2000120 ! lateral line ganglion created_by: TermGenie creation_date: 2014-06-25T01:17:57Z [Term] id: CL:2000034 name: anterior lateral line neuromast hair cell namespace: cell def: "Any neuromast hair cell that is part of a anterior lateral line." [] is_a: CL:0000856 ! neuromast hair cell relationship: part_of UBERON:2001470 ! anterior lateral line created_by: TermGenie creation_date: 2014-06-25T03:44:37Z [Term] id: CL:2000035 name: anterior lateral line neuromast mantle cell namespace: cell def: "Any neuromast mantle cell that is part of a anterior lateral line." [] is_a: CL:0000851 ! neuromast mantle cell relationship: part_of UBERON:2001470 ! anterior lateral line created_by: TermGenie creation_date: 2014-06-25T03:44:44Z [Term] id: CL:2000036 name: anterior lateral line neuromast support cell namespace: cell def: "Any neuromast support cell that is part of a anterior lateral line." [] is_a: CL:0000852 ! neuromast support cell relationship: part_of UBERON:2001470 ! anterior lateral line created_by: TermGenie creation_date: 2014-06-25T03:44:51Z [Term] id: CL:2000037 name: posterior lateral line neuromast hair cell namespace: cell def: "Any neuromast hair cell that is part of a posterior lateral line." [] is_a: CL:0000856 ! neuromast hair cell relationship: part_of UBERON:0006334 ! posterior lateral line created_by: TermGenie creation_date: 2014-06-25T03:44:57Z [Term] id: CL:2000038 name: posterior lateral line neuromast mantle cell namespace: cell def: "Any neuromast mantle cell that is part of a posterior lateral line." [] is_a: CL:0000851 ! neuromast mantle cell relationship: part_of UBERON:0006334 ! posterior lateral line created_by: TermGenie creation_date: 2014-06-25T03:45:04Z [Term] id: CL:2000039 name: posterior lateral line neuromast support cell namespace: cell def: "Any neuromast support cell that is part of a posterior lateral line." [] is_a: CL:0000852 ! neuromast support cell relationship: part_of UBERON:0006334 ! posterior lateral line created_by: TermGenie creation_date: 2014-06-25T03:45:11Z [Term] id: CL:2000070 name: optic choroid fibroblast namespace: cell def: "Any fibroblast that is part of a optic choroid." [] comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6620 relationship: part_of UBERON:0001776 ! optic choroid created_by: TermGenie creation_date: 2014-10-07T18:50:43Z [Term] id: CL:2000084 name: conjunctiva goblet cell namespace: cell def: "Any goblet cell that is part of a conjunctiva." [] is_a: CL:1000432 ! conjunctival epithelial cell created_by: TermGenie creation_date: 2014-12-02T19:28:38Z [Term] id: CL:2000094 name: nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa namespace: cell def: "Any epithelial cell of viscerocranial mucosa that is part of a nasal cavity respiratory epithelium." [] relationship: part_of UBERON:0005385 ! nasal cavity respiratory epithelium created_by: TermGenie creation_date: 2015-03-31T22:25:17Z [Term] id: UBERON:0000003 name: naris namespace: uberon def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [http://orcid.org/0000-0001-9114-8737] subset: uberon_slim subset: vertebrate_core xref: AAO:0000311 xref: EHDAA2:0001225 xref: EHDAA:9083 xref: EMAPA:17847 xref: galen:Naris xref: http://www.snomedbrowser.com/Codes/Details/272650008 xref: MA:0000282 xref: VHOG:0000663 relationship: part_of UBERON:0005725 ! olfactory system property_value: UBPROP:0000001 "One of paired external openings of the nasal chamber.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000311", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "Naris refer to the external and interior naris (choana) of tetrapods, and to anterior and posterior naris of zebrafish. It seems now accepted that the structure is homologous: The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000663", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nature02843 Zhu M, Ahlberg PE, The origin of the internal nostril in tetrapodes. Nature (2004)"} property_value: UBPROP:0000008 "in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity" xsd:string property_value: UBPROP:0000012 "we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000004 name: nose namespace: uberon def: "The olfactory organ of vertebrates, consisting of nares, olfactory epithelia and the structures and skeletal framework of the nasal cavity." [UBERON:cjm] subset: efo_slim subset: major_organ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "nasal sac" EXACT SENSU [ZFA:0000047] synonym: "nasus" RELATED LATIN [http://en.wikipedia.org/wiki/Nose] synonym: "nose" EXACT HUMAN_PREFERRED [MA:0000281] synonym: "olfactory apparatus" RELATED [UBERON:cjm] synonym: "peripheral olfactory organ" EXACT [ZFA:0000047] synonym: "proboscis" RELATED [] xref: BTO:0000840 xref: CALOHA:TS-2037 xref: EHDAA2:0001274 xref: EHDAA:1502 xref: EMAPA:16542 xref: EV:0100037 xref: EV:0100370 xref: FMA:46472 xref: GAID:77 xref: galen:Nose xref: http://en.wikipedia.org/wiki/Nose xref: http://linkedlifedata.com/resource/umls/id/C0028429 xref: http://www.snomedbrowser.com/Codes/Details/181195007 xref: MA:0000281 xref: MAT:0000139 xref: MESH:D009666 xref: MIAA:0000139 xref: NCIT:C12756 xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA xref: TAO:0000047 xref: UMLS:C0028429 {source="ncithesaurus:Nose"} xref: ZFA:0000047 is_a: UBERON:0002268 ! olfactory organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d0/Canine-nose.jpg xsd:anyURI property_value: UBPROP:0000001 "a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)[Wikipedia:Nose]." xsd:string {source="http://en.wikipedia.org/wiki/Nose"} property_value: UBPROP:0000001 "Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired[ZFA:0000047]." xsd:string {source="ZFA:0000047"} property_value: UBPROP:0000001 "the organ that is specialized for smell and is part of the respiratory system" xsd:string {source="MP:0002233"} property_value: UBPROP:0000008 "the structure of the nose varies across vertebrates. In tetrapods the nose is part of the respiratory system.[PMID:25312359]" xsd:string [Term] id: UBERON:0000005 name: chemosensory organ namespace: uberon subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0005726 ! chemosensory system [Term] id: UBERON:0000018 name: compound eye namespace: uberon def: "A light sensing organ composed of ommatidia" [FB:gg, http://en.wikipedia.org/wiki/Compound_eye] subset: organ_slim subset: uberon_slim synonym: "adult compound eye" RELATED [] synonym: "faceted eye" RELATED [] synonym: "Facettenauge" RELATED [BTO:0001921] synonym: "insect eye" RELATED [] synonym: "Komplexauge" RELATED [BTO:0001921] synonym: "zusammengesetztes Auge" RELATED [BTO:0001921] xref: BTO:0001921 xref: Compound:eye xref: FBbt:00004508 xref: HAO:0000217 xref: TGMA:0000024 is_a: UBERON:0015165 ! multi-unit eye property_value: seeAlso https://github.com/obophenotype/uberon/issues/457 xsd:anyURI property_value: UBPROP:0000008 "The term compound eye is sometimes used for the multi-unit eyes of annelids, bivalves, echinoderms. We follow Richter et al and restrict this class to the arthropod structure for these structures" xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} [Term] id: UBERON:0000019 name: camera-type eye namespace: uberon def: "An organ of sight that includes the camera-type eyeball and supporting structures such as the lacrimal apparatus, the conjunctiva, the eyelid." [GO:0043010, https://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "camera-type eye plus associated structures" RELATED [] synonym: "eye" BROAD [FMA:54448] synonym: "eyes" RELATED PLURAL [TAO:0000107] synonym: "orbital part of face" RELATED [FMA:54448] synonym: "orbital region" RELATED [FMA:54448] synonym: "regio orbitalis" EXACT LATIN [FMA:54448, FMA:TA] synonym: "vertebrate eye" NARROW [] xref: AAO:0010340 xref: BIRNLEX:1169 xref: BTO:0004688 xref: EHDAA2:0000484 xref: EHDAA:936 xref: EMAPA:16198 xref: FMA:54448 xref: http://linkedlifedata.com/resource/umls/id/C0015392 xref: http://linkedlifedata.com/resource/umls/id/C1280202 xref: http://www.snomedbrowser.com/Codes/Details/181143004 xref: MA:0000261 xref: NCIT:C12401 xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA xref: TAO:0000107 xref: UMLS:C0015392 {source="BIRNLEX:1169"} xref: UMLS:C0015392 {source="ncithesaurus:Eye"} xref: UMLS:C1280202 {source="BIRNLEX:1169"} xref: VHOG:0000275 xref: XAO:0000179 xref: ZFA:0000107 is_a: UBERON:0000047 ! simple eye property_value: UBPROP:0000001 "A cavitated compound organ that transduces light waves into neural signals.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000107", ontology="TAO", source="TAO:wd"} property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000275", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)"} property_value: UBPROP:0000012 "FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ), as well as other structures, and the orbit of skull. MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0000020 name: sense organ namespace: uberon def: "An organ that is capable of transducing sensory stimulus to the nervous system." [https://github.com/obophenotype/uberon/issues/549, https://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "organ of sense organ system" EXACT [OBOL:accepted] synonym: "organ of sensory organ system" EXACT [OBOL:accepted] synonym: "organ of sensory system" EXACT [OBOL:accepted] synonym: "sense organ system organ" EXACT [OBOL:automatic] synonym: "sensillum" NARROW [WBbt:0006929] synonym: "sensor" RELATED [] synonym: "sensory organ" EXACT [] synonym: "sensory organ system organ" EXACT [OBOL:automatic] synonym: "sensory system organ" EXACT [OBOL:accepted] synonym: "Sinnesorgan" RELATED [BTO:0000202] xref: AEO:0000094 xref: BSA:0000121 xref: BTO:0000202 xref: CALOHA:TS-2043 xref: EHDAA2:0001824 xref: EHDAA:500 xref: EMAPA:35955 xref: FBbt:00005155 xref: GAID:63 xref: HAO:0000930 xref: http://linkedlifedata.com/resource/umls/id/C0935626 xref: http://www.snomedbrowser.com/Codes/Details/244485009 xref: MA:0000017 xref: MESH:D012679 xref: NCIT:C33224 xref: UMLS:C0935626 {source="ncithesaurus:Organ_of_the_Special_Sense"} xref: VHOG:0001407 xref: WBbt:0006929 relationship: part_of UBERON:0001032 ! sensory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png xsd:anyURI property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000046 name: stemma namespace: uberon def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [http://en.wikipedia.org/wiki/Eye#Pit_eyes, http://en.wikipedia.org/wiki/Stemma] subset: uberon_slim synonym: "pit eye" EXACT [http://en.wikipedia.org/wiki/Eye#Pit_eyes] xref: http://en.wikipedia.org/wiki/Stemma is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000047 name: simple eye namespace: uberon def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [http://en.wikipedia.org/wiki/Eye#Simple_eyes] subset: grouping_class subset: uberon_slim xref: Simple_eyes xref: TGMA:0000729 is_a: UBERON:0000970 ! eye [Term] id: UBERON:0000048 name: pinhole eye namespace: uberon def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [http://en.wikipedia.org/wiki/Pinhole_eye, https://doi.org/10.1146/annurev.ne.15.030192.000245] subset: grouping_class subset: uberon_slim xref: Pinhole:eye is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000049 name: spherical lensed eye namespace: uberon def: "simple eye that consists of a lens of one refractive index" [http://en.wikipedia.org/wiki/Eye#Spherical_lensed_eye] subset: grouping_class is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000050 name: simple eye with multiple lenses namespace: uberon def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [http://en.wikipedia.org/wiki/Eye#Multiple_lenses] subset: grouping_class subset: uberon_slim xref: Multiple_lenses is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000053 name: macula lutea namespace: uberon def: "An oval area in the retina, usually located temporal to the posterior pole of the eye and slightly below the level of the optic disk. It is characterized by the presence of a yellow pigment diffusely permeating the inner layers, contains the fovea centralis in its center, and provides the best phototopic visual acuity. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)" [MESH:A09.371.729.522] subset: pheno_slim subset: uberon_slim synonym: "macula" RELATED [] synonym: "macula flava retinae" RELATED [BTO:0003015] synonym: "macula retinae" RELATED [BTO:0003015] synonym: "maculae" RELATED [] xref: BIRNLEX:2540 xref: BTO:0003015 xref: EMAPA:36516 xref: EV:0100349 xref: FMA:58637 xref: GAID:909 xref: http://en.wikipedia.org/wiki/Macula_of_retina xref: http://linkedlifedata.com/resource/umls/id/C0450295 xref: http://linkedlifedata.com/resource/umls/id/C1284755 xref: http://www.snomedbrowser.com/Codes/Details/362517001 xref: MA:0001306 xref: MESH:D008266 xref: NCIT:C26464 xref: NCIT:C33044 xref: UMLS:C0450295 {source="ncithesaurus:Macula_Lutea"} xref: UMLS:C0450295 {source="BIRNLEX:2540"} xref: UMLS:C1284755 {source="BIRNLEX:2540"} relationship: part_of UBERON:0000966 ! retina property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png xsd:anyURI [Term] id: UBERON:0000054 name: macula namespace: uberon def: "Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified]." [MESH:A09.246.631.909.625.125] subset: pheno_slim subset: uberon_slim synonym: "acoustic macula" RELATED [MESH:A09.246.631.909.625.125] synonym: "acoustic maculae" RELATED PLURAL [MESH:A09.246.631.909.625.125] synonym: "macula" EXACT [] synonym: "maculae" EXACT PLURAL [] synonym: "sensory macula" EXACT [ZFA:0000386] synonym: "sensory patch" EXACT [ZFA:0000386] xref: GAID:777 xref: MESH:D008267 xref: TAO:0000386 xref: ZFA:0000386 relationship: part_of UBERON:0001846 ! internal ear property_value: IAO:0000232 "this refers to the inner ear structure, not the macula of the retina. We follow ZFA in including a grouping class for the macula of utricle and sacule" xsd:string property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000386", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000007 "macular" xsd:string [Term] id: UBERON:0000061 name: anatomical structure namespace: uberon def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003] subset: upper_level synonym: "biological structure" EXACT [] synonym: "connected biological structure" EXACT [CARO:0000003] xref: AAO:0010825 xref: AEO:0000003 xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 xref: FBbt:00007001 xref: FMA:305751 xref: FMA:67135 xref: GAID:781 xref: HAO:0000003 xref: http://dbpedia.org/ontology/AnatomicalStructure xref: http://www.snomedbrowser.com/Codes/Details/362889002 xref: MA:0003000 xref: MESH:D000825 xref: TAO:0000037 xref: TGMA:0001823 xref: VHOG:0001759 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000207 name: compound eye corneal lens namespace: uberon def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] synonym: "acellular lens" RELATED [] xref: FBbt:00004199 xref: TADS:0000304 is_a: UBERON:0005389 ! transparent eye structure relationship: part_of UBERON:0000018 ! compound eye created_by: cjm creation_date: 2009-04-18T01:35:32Z [Term] id: UBERON:0000389 name: lens cortex namespace: uberon def: "Tissue that surrounds the lens nucleus" [http://www.thefreedictionary.com/lens+cortex] synonym: "cortex of lens" EXACT [FMA:58970] xref: BTO:0001632 xref: CALOHA:TS-0542 xref: FMA:58970 xref: http://www.snomedbrowser.com/Codes/Details/280626006 xref: MESH:A09.371.509.225 relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0000390 name: lens nucleus namespace: uberon def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633] synonym: "nucleus of lens" EXACT [FMA:58971] xref: BTO:0001633 xref: FMA:58971 xref: http://www.snomedbrowser.com/Codes/Details/280628007 xref: MESH:A09.371.509.670 relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0000395 name: cochlear ganglion namespace: uberon def: "The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, MP:0002855] subset: pheno_slim synonym: "cochlear part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "Corti's ganglion" EXACT [FMA:53445] synonym: "ganglion cochlearis" RELATED [BTO:0001688] synonym: "ganglion of Corti" EXACT [FMA:53445] synonym: "ganglion spirale" RELATED LATIN [http://en.wikipedia.org/wiki/Spiral_ganglion] synonym: "ganglion spirale cochleae" RELATED [BTO:0001688] synonym: "spiral ganglion" EXACT [FMA:53445] synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688] synonym: "vestibulocochlear ganglion cochlear component" RELATED [EMAPA:17572] synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085] xref: BAMS:GcVIII xref: BTO:0001688 xref: EHDAA2:0002198 xref: EMAPA:17572 xref: FMA:53445 xref: GAID:722 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1405 xref: http://www.snomedbrowser.com/Codes/Details/368955007 xref: MA:0001085 xref: MESH:D013136 xref: Spiral:ganglion xref: VHOG:0001183 relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion relationship: part_of UBERON:0016490 ! auditory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png xsd:anyURI property_value: IAO:0000116 "in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems" xsd:string [Term] id: UBERON:0000396 name: vallate papilla namespace: uberon alt_id: UBERON:0002927 def: "Any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue" [MGI:smb, MP:0006258] subset: pheno_slim synonym: "circumvallate papilla" EXACT [MA:0001594] synonym: "circumvallate papilla of tongue" EXACT [FMA:54822] synonym: "circumvallate papillae" RELATED PLURAL [] synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA] synonym: "vallate papilla of tongue" EXACT [] xref: BIRNLEX:4106_2 xref: BTO:0001705 xref: EMAPA:18271 xref: FMA:54822 xref: http://linkedlifedata.com/resource/umls/id/C0226965 xref: http://linkedlifedata.com/resource/umls/id/C1182961 xref: http://linkedlifedata.com/resource/umls/id/C1267555 xref: http://www.snomedbrowser.com/Codes/Details/69517000 xref: MA:0001594 xref: NCIT:C32322 xref: UMLS:C0226965 {source="BIRNLEX:4106_2"} xref: UMLS:C1182961 {source="BIRNLEX:4106_2"} xref: UMLS:C1182961 {source="ncithesaurus:Circumvallate_Papilla"} xref: UMLS:C1267555 {source="BIRNLEX:4106_2"} xref: Vallate:papilla is_a: UBERON:0014389 ! gustatory papilla of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1015.png xsd:anyURI property_value: UBPROP:0000001 "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongu[BTO:0001705, Wikipedia:Vallate_papilla]e" xsd:string {source="BTO:0001705, Wikipedia:Vallate_papilla"} [Term] id: UBERON:0000402 name: nasal vestibule namespace: uberon def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nasal_vestibule] synonym: "vestibular part of nasal cavity" EXACT [FMA:59644] synonym: "vestibulum nasale" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED [BTO:0001761] synonym: "vestibulum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_vestibule] xref: BTO:0001761 xref: CALOHA:TS-0660 xref: FMA:59644 xref: http://www.snomedbrowser.com/Codes/Details/278940000 xref: Nasal:vestibule is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001707 ! nasal cavity property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png xsd:anyURI [Term] id: UBERON:0000465 name: material anatomical entity namespace: uberon def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737] subset: upper_level xref: AAO:0010264 xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 xref: FBbt:00007016 xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 xref: TGMA:0001826 xref: VHOG:0001721 is_a: BFO:0000040 ! material entity is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000467 name: anatomical system namespace: uberon def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011] subset: pheno_slim subset: uberon_slim subset: upper_level synonym: "anatomical systems" RELATED PLURAL [ZFA:0001439] synonym: "body system" EXACT [BIRNLEX:14] synonym: "connected anatomical system" EXACT [CARO:0000011] synonym: "organ system" EXACT [] synonym: "system" BROAD [GO:0048731] xref: AAO:0000007 xref: AEO:0000011 xref: BILA:0000011 xref: BIRNLEX:14 xref: BSA:0000049 xref: CALOHA:TS-2088 xref: CARO:0000011 xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 xref: FBbt:00004856 xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 xref: http://linkedlifedata.com/resource/umls/id/C0460002 xref: http://www.snomedbrowser.com/Codes/Details/278195005 xref: MA:0000003 xref: NCIT:C12919 xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ xref: Organ:system xref: TAO:0001439 xref: TGMA:0001831 xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"} xref: VHOG:0001725 xref: WBbt:0005746 xref: WBbt:0005763 xref: XAO:0003002 xref: ZFA:0001439 is_a: UBERON:0000061 ! anatomical structure property_value: seeAlso EHDAA2:0001330 [Term] id: UBERON:0000941 name: cranial nerve II namespace: uberon def: "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, ISBN:0471888893] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "02 optic nerve" EXACT [AAO:0010345] synonym: "2n" BROAD ABBREVIATION [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource] synonym: "CN-II" RELATED [ZFA:0000435] synonym: "cranial II" EXACT [] synonym: "nerve II" RELATED [NeuroNames:289] synonym: "nervus opticus" EXACT LATIN [] synonym: "nervus opticus [II]" EXACT LATIN [FMA:50863, FMA:TA] synonym: "optic" RELATED [TAO:0000435] synonym: "optic II" EXACT [EHDAA2:0001313] synonym: "optic II nerve" EXACT [EHDAA2:0001313] synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435] synonym: "optic nerve [II]" EXACT [] synonym: "second cranial nerve" EXACT [] xref: AAO:0010345 xref: BAMS:2n xref: BAMS:IIn xref: BAMS:nII xref: BIRNLEX:1640 xref: CALOHA:TS-0713 xref: DHBA:15544 xref: EFO:0004258 xref: EHDAA2:0001313 xref: EHDAA:6788 xref: EMAPA:17575 xref: FMA:50863 xref: GAID:831 xref: HBA:9307 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=289 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=289 {source="BIRNLEX:1640"} xref: http://linkedlifedata.com/resource/umls/id/C0029130 xref: http://www.snomedbrowser.com/Codes/Details/180938001 xref: MA:0001097 xref: MBA:848 xref: MESH:D009900 xref: NCIT:C12761 xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA xref: Optic:nerve xref: TAO:0000435 xref: UMLS:C0029130 {source="BIRNLEX:1640"} xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"} xref: VHOG:0000543 xref: XAO:0000188 xref: ZFA:0000435 relationship: part_of UBERON:0002104 ! visual system property_value: IAO:0000116 "Do not classify under 'cranial nerve', as this is not a true nerve - should be classified as evaginated sensory afferent[ISBN:0471888893]" xsd:string property_value: UBPROP:0000001 "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000435", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010345", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup (reference 1); The (optic) stalk persists as the optic nerve (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000543", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429, http://medical-dictionary.thefreedictionary.com/optic+stalk"} property_value: UBPROP:0000012 "(relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon" xsd:string {external_ontology="MA"} [Term] id: UBERON:0000963 name: head sensillum namespace: uberon xref: FBbt:00004114 xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0000964 name: cornea namespace: uberon def: "the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure" [ISBN:0-683-40008-8, MESH:A09.371.060.217, MP:0001312] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cornea of camera-type eye" EXACT [GO:0061303] synonym: "corneas" RELATED PLURAL [ZFA:0000640] synonym: "tunica cornea" RELATED [] xref: AAO:0010344 xref: BTO:0000286 xref: CALOHA:TS-0171 xref: EFO:0000377 xref: EHDAA2:0000316 xref: EHDAA:10199 xref: EMAPA:17161 xref: EV:0100341 xref: FMA:58238 xref: GAID:892 xref: http://en.wikipedia.org/wiki/Cornea xref: http://linkedlifedata.com/resource/umls/id/C0010031 xref: http://www.snomedbrowser.com/Codes/Details/181162001 xref: MA:0000266 xref: MESH:D003315 xref: NCIT:C12342 xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA xref: TAO:0000640 xref: UMLS:C0010031 {source="ncithesaurus:Cornea"} xref: VHOG:0000164 xref: XAO:0000180 xref: ZFA:0000640 relationship: part_of UBERON:0001801 {source="MA"} ! anterior segment of eyeball relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region relationship: part_of UBERON:0012430 {source="FMA-isa"} ! tunica fibrosa of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: UBPROP:0000007 "corneal" xsd:string property_value: UBPROP:0000008 "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals. In fish, and aquatic vertebrates in general, the cornea plays no role in focusing light, since it has virtually the same refractive index as water" xsd:string [Term] id: UBERON:0000965 name: lens of camera-type eye namespace: uberon def: "Transparent part of camera-type eye that helps to refract light to be focused on the retina." [http://en.wikipedia.org/wiki/Lens_(anatomy), http://orcid.org/0000-0002-6601-2165] comment: The lens is avascular and nourished by diffusion from the aqueous and vitreous subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "camera-type eye lens" EXACT [GO:0002088] synonym: "crystalline lens" RELATED [BTO:0000723] synonym: "eye lens" EXACT SENSU [] synonym: "lens" EXACT SENSU [] synonym: "lens crystallina" EXACT [http://en.wikipedia.org/wiki/Lens_(anatomy)] synonym: "lenses" RELATED PLURAL [ZFA:0000035] synonym: "ocular lens" RELATED [BTO:0000723] xref: AAO:0010348 xref: BTO:0000723 xref: CALOHA:TS-0545 xref: EHDAA:9057 xref: EMAPA:17838 xref: EV:0100343 xref: FMA:58241 xref: http://linkedlifedata.com/resource/umls/id/C0023317 xref: http://www.snomedbrowser.com/Codes/Details/181169005 xref: Lens:(anatomy) xref: MA:0000275 xref: MAT:0000141 xref: MESH:A09.371.509 xref: MIAA:0000141 xref: NCIT:C12743 xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0000975 xref: TAO:0000035 xref: UMLS:C0023317 {source="ncithesaurus:Crystalline_Lens"} xref: VHOG:0000169 xref: XAO:0000008 xref: ZFA:0000035 is_a: UBERON:0005389 ! transparent eye structure relationship: part_of UBERON:0001801 ! anterior segment of eyeball property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000169", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)"} property_value: UBPROP:0000008 "This class excludes compound eye corneal lenses." xsd:string [Term] id: UBERON:0000966 name: retina namespace: uberon def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [http://en.wikipedia.org/wiki/Retina, ZFIN:curator] comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "inner layer of eyeball" EXACT [] synonym: "Netzhaut" RELATED [BTO:0001175] synonym: "retina of camera-type eye" EXACT [GO:0060041] synonym: "retinas" RELATED PLURAL [ZFA:0000152] synonym: "tunica interna of eyeball" EXACT [] xref: AAO:0010352 xref: BAMS:R xref: BIRNLEX:1153 xref: BTO:0001175 xref: CALOHA:TS-0865 xref: EFO:0000832 xref: EHDAA2:0001627 xref: EHDAA:4757 xref: EMAPA:17168 xref: EV:0100348 xref: FMA:58301 xref: GAID:755 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1862 xref: http://en.wikipedia.org/wiki/Retina xref: http://linkedlifedata.com/resource/umls/id/C0035298 xref: http://linkedlifedata.com/resource/umls/id/C1278894 xref: http://www.snomedbrowser.com/Codes/Details/181171005 xref: MA:0000276 xref: MAT:0000142 xref: MBA:304325711 xref: MESH:D012160 xref: MIAA:0000142 xref: NCIT:C12343 xref: NIFSTD_RETIRED:birnlex_1156 xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA xref: TAO:0000152 xref: UMLS:C0035298 {source="BIRNLEX:1153"} xref: UMLS:C0035298 {source="ncithesaurus:Retina"} xref: UMLS:C1278894 {source="BIRNLEX:1153"} xref: VHOG:0000229 xref: XAO:0000009 xref: ZFA:0000152 is_a: UBERON:0005388 ! photoreceptor array relationship: part_of UBERON:0001802 ! posterior segment of eyeball relationship: part_of UBERON:0019207 ! chorioretinal region property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png xsd:anyURI property_value: UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000152", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000229", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)"} property_value: UBPROP:0000007 "retinal" xsd:string [Term] id: UBERON:0000970 name: eye namespace: uberon def: "An organ that detects light." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: functional_classification subset: major_organ subset: organ_slim subset: uberon_slim synonym: "light-detecting organ" RELATED [] synonym: "visual apparatus" RELATED [EV:0100336] xref: BILA:0000017 xref: BTO:0000439 xref: CALOHA:TS-0309 xref: EFO:0000827 xref: EV:0100336 xref: FBbt:00005162 xref: GAID:69 xref: http://en.wikipedia.org/wiki/Eye xref: MAT:0000140 xref: MESH:D005123 xref: MIAA:0000140 xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002104 ! visual system property_value: IAO:0000232 "This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each)" xsd:string property_value: UBPROP:0000007 "ocular" xsd:string property_value: UBPROP:0000007 "optic" xsd:string property_value: UBPROP:0000010 "Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva," xsd:string [Term] id: UBERON:0000971 name: ommatidium namespace: uberon def: "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells." [http://www.ncbi.nlm.nih.gov/pubmed/21062451] subset: uberon_slim synonym: "omatidia" RELATED PLURAL [] synonym: "omatidium" EXACT [] xref: BTO:0001922 xref: FBbt:00004510 xref: HAO:0000666 xref: http://en.wikipedia.org/wiki/Ommatidium xref: MAT:0000143 xref: MIAA:0000143 is_a: UBERON:0000970 {source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} ! eye is_a: UBERON:0002536 ! arthropod sensillum relationship: part_of UBERON:0000018 ! compound eye property_value: UBPROP:0000007 "ommatidial" xsd:string [Term] id: UBERON:0001032 name: sensory system namespace: uberon def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [http://en.wikipedia.org/wiki/Sensory_system] subset: efo_slim subset: uberon_slim subset: vertebrate_core synonym: "organa sensuum" EXACT LATIN [FMA:75259, FMA:TA] synonym: "organa sensuum" RELATED LATIN [http://en.wikipedia.org/wiki/Sensory_system] synonym: "sense organ subsystem" EXACT [] synonym: "sense organs" EXACT [FMA:75259] synonym: "sense organs set" EXACT [FMA:75259] synonym: "sensory organ system" RELATED [] synonym: "sensory subsystem" EXACT [] synonym: "sensory systems" EXACT PLURAL [TAO:0000282] synonym: "set of sense organs" RELATED [FMA:75259] xref: AAO:0000555 xref: BAMS:SEN xref: BILA:0000099 xref: EFO:0000805 xref: EHDAA2:0003094 xref: EMAPA:16192 xref: FBbt:00007692 xref: FMA:75259 xref: MA:0002442 xref: MAT:0000031 xref: MIAA:0000031 xref: NLXANAT:090816 xref: Sensory:system xref: TAO:0000282 xref: VHOG:0001674 xref: XAO:0003194 xref: ZFA:0000282 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0004456 ! entire sense organ system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png xsd:anyURI property_value: UBPROP:0000003 "An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001674", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)"} property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string [Term] id: UBERON:0001038 name: chordotonal organ namespace: uberon def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament." [FB:FBrf0056378, http://en.wikipedia.org/wiki/Chordotonal_organ] comment: To be ceded to Arthropod anatomy ontology subset: efo_slim subset: organ_slim subset: uberon_slim synonym: "ch" RELATED [] synonym: "scolopophorous organ" RELATED [] xref: Chordotonal:organ xref: EFO:0000940 xref: FBbt:00005215 xref: MAT:0000209 xref: MIAA:0000209 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0001062 name: anatomical entity namespace: uberon def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] subset: upper_level xref: AAO:0010841 xref: AEO:0000000 xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 xref: FBbt:10000000 xref: FBbt_root:00000000 xref: FMA:62955 xref: HAO:0000000 xref: http://linkedlifedata.com/resource/umls/id/C1515976 xref: MA:0000001 xref: NCIT:C12219 xref: TAO:0100000 xref: TGMA:0001822 xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"} xref: WBbt:0000100 xref: XAO:0000000 xref: ZFA:0100000 is_a: BFO:0000004 ! independent continuant [Term] id: UBERON:0001351 name: lacrimal sac namespace: uberon def: "The upper dilated end of the nasolacrimal duct that is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla; it connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity; like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue." [MGI:anna] subset: pheno_slim subset: uberon_slim synonym: "lachrymal sac" EXACT [] synonym: "lacrymal sac" EXACT [] synonym: "saccus lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_sac] xref: FMA:20289 xref: http://linkedlifedata.com/resource/umls/id/C0229289 xref: http://www.snomedbrowser.com/Codes/Details/362534009 xref: Lacrimal:sac xref: MA:0001298 xref: NCIT:C32909 xref: UMLS:C0229289 {source="ncithesaurus:Lacrimal_Sac"} relationship: part_of UBERON:0002392 ! nasolacrimal duct property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI [Term] id: UBERON:0001352 name: external acoustic meatus namespace: uberon def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [http://en.wikipedia.org/wiki/External_acoustic_meatus] subset: pheno_slim subset: uberon_slim synonym: "auditory canal" EXACT [] synonym: "auditory meatus" RELATED [EHDAA2:0000460] synonym: "ear canal" EXACT [http://en.wikipedia.org/wiki/Ear_canal] synonym: "external acoustic tube" EXACT [FMA:61734] synonym: "external auditory canal" EXACT [] synonym: "external auditory meatus" RELATED [] synonym: "external auditory tube" EXACT [FMA:61734] xref: EHDAA2:0000460 xref: EHDAA:8975 xref: EMAPA:17588 xref: EV:0100356 xref: FMA:61734 xref: GAID:864 xref: galen:ExternalAuditoryMeatus xref: http://en.wikipedia.org/wiki/External_acoustic_meatus xref: http://linkedlifedata.com/resource/umls/id/C0013444 xref: http://www.snomedbrowser.com/Codes/Details/181178004 xref: MA:0000260 xref: MESH:D004424 xref: NCIT:C12498 xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA xref: UMLS:C0013444 {source="ncithesaurus:External_Acoustic_Meatus"} xref: VHOG:0000977 relationship: part_of UBERON:0001691 {source="FMA"} ! external ear property_value: IAO:0000116 "consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct." xsd:string property_value: UBPROP:0000011 "tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469]" xsd:string property_value: UBPROP:0000012 "subdivision of head in FMA." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001457 name: skin of eyelid namespace: uberon def: "A zone of skin that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blepharon zone of skin" EXACT [OBOL:automatic] synonym: "eyelid skin" EXACT [] synonym: "eyelid zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of blepharon" EXACT [OBOL:automatic] synonym: "zone of skin of eyelid" EXACT [OBOL:automatic] xref: EMAPA:37536 {source="MA:th"} xref: FMA:24760 xref: http://linkedlifedata.com/resource/umls/id/C0222088 xref: http://www.snomedbrowser.com/Codes/Details/245947005 xref: MA:0001256 xref: NCIT:C52718 xref: UMLS:C0222088 {source="ncithesaurus:Eyelid_Skin"} relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001459 name: skin of external ear namespace: uberon def: "A zone of skin that is part of a external ear [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic] synonym: "auricular region zone of skin" EXACT [OBOL:automatic] synonym: "ear skin" EXACT [] synonym: "external ear skin" EXACT [] synonym: "external ear zone of skin" EXACT [OBOL:automatic] synonym: "outer ear zone of skin" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region" EXACT [OBOL:automatic] synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic] synonym: "zone of skin of external ear" EXACT [OBOL:automatic] synonym: "zone of skin of outer ear" EXACT [OBOL:automatic] xref: EMAPA:35301 xref: FMA:24775 xref: http://linkedlifedata.com/resource/umls/id/C0222110 xref: http://www.snomedbrowser.com/Codes/Details/244073008 xref: MA:0001233 xref: NCIT:C49481 xref: UMLS:C0222110 {source="ncithesaurus:Ear_Skin"} relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001576 name: intrinsic muscle of tongue namespace: uberon def: "The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII." [http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop] synonym: "intrinsic lingual muscle" EXACT [] synonym: "intrinsic tongue muscle" EXACT [] xref: EHDAA2:0002064 xref: EHDAA:9152 xref: EMAPA:18280 xref: FMA:46701 xref: http://www.snomedbrowser.com/Codes/Details/244788005 xref: MA:0002327 xref: VHOG:0000748 relationship: part_of UBERON:0001723 ! tongue property_value: UBPROP:0000001 "The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: UBPROP:0000003 "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000748", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1002/dvdy.20587 Kusakabe R, Kuratani S, Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey. Developmental Dynamics (2005)"} property_value: UBPROP:0000009 "The main function of the intrinsic muscles is to provide shape. They are not involved with changing the position of the tongue and are not attached to bone" xsd:string {source="WP"} [Term] id: UBERON:0001578 name: orbicularis oculi muscle namespace: uberon def: "A circumorbital muscle in the face that closes the eyelid[HP]." [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] comment: It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [Wikipedia:Orbicularis_oculi_muscle] subset: pheno_slim subset: uberon_slim synonym: "musculus orbicularis oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] synonym: "orbicularis oculi" EXACT [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] synonym: "tensor tarsi" RELATED [http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle] xref: EMAPA:35619 xref: FMA:46779 xref: http://en.wikipedia.org/wiki/Orbicularis_oculi_muscle xref: http://linkedlifedata.com/resource/umls/id/C0224122 xref: http://www.snomedbrowser.com/Codes/Details/244726006 xref: MA:0001254 xref: NCIT:C52886 xref: UMLS:C0224122 {source="ncithesaurus:Orbicularis_Oculi"} is_a: UBERON:0004277 ! eye muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png xsd:anyURI [Term] id: UBERON:0001583 name: extrinsic auricular muscle namespace: uberon def: "Auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]." [http://en.wikipedia.org/wiki/Auriculares_muscles, http://www.daviddarling.info/encyclopedia/A/auricle.html] xref: Auriculares:muscles xref: EMAPA:37527 {source="MA:th"} xref: FMA:46854 xref: http://www.snomedbrowser.com/Codes/Details/244758001 xref: MA:0001230 is_a: UBERON:0001595 ! auricular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/00/Gray906.png xsd:anyURI property_value: UBPROP:0000012 "Wikipedia topic refers to the extrinsic auricular muscles" xsd:string [Term] id: UBERON:0001595 name: auricular muscle namespace: uberon def: "A muscle that is part of the pinna and is attached to the auricular cartilage" [http://orcid.org/0000-0002-6601-2165] synonym: "attolens aurem muscle" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "attrahens aurem muscle" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "auriclular" BROAD [] synonym: "auriculares" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "auriculares anterior" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "auriculares muscles" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "auricularis" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "auricularis muscle" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "auricularis muscles" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "muscle of auricle" EXACT [] synonym: "musculi auriculares" EXACT LATIN [http://en.wikipedia.org/wiki/Auricular_muscles] synonym: "temporoparietalis" RELATED [http://en.wikipedia.org/wiki/Auricular_muscles] xref: Auricular:muscles xref: EMAPA:35159 xref: FMA:48966 xref: http://www.snomedbrowser.com/Codes/Details/244757006 xref: MA:0001229 relationship: part_of UBERON:0001757 {source="MA"} ! pinna property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI property_value: UBPROP:0000014 "In some mammals these muscles can adjust the direction of the pinna. In humans these muscles possess very little action. The auricularis anterior draws the auricula forward and upward; the Auricularis superior slightly raises it; and the Auricularis posterior draws it backward." xsd:string [Term] id: UBERON:0001596 name: intrinsic auricular muscle namespace: uberon def: "Auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis" [http://www.daviddarling.info/encyclopedia/A/auricle.html] xref: EMAPA:37528 {source="MA:th"} xref: FMA:48967 xref: http://www.snomedbrowser.com/Codes/Details/244762007 xref: MA:0001231 is_a: UBERON:0001595 {source="FMA"} ! auricular muscle [Term] id: UBERON:0001599 name: stapedius muscle namespace: uberon def: "The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [http://en.wikipedia.org/wiki/Stapedius_muscle] subset: pheno_slim subset: uberon_slim synonym: "musculus stapedius" RELATED LATIN [http://en.wikipedia.org/wiki/Stapedius_muscle] synonym: "stapedius" EXACT [EHDAA2:0001909] xref: EHDAA:9029 xref: EMAPA:18586 xref: FMA:49027 xref: GAID:164 xref: http://linkedlifedata.com/resource/umls/id/C0038151 xref: http://www.snomedbrowser.com/Codes/Details/244780003 xref: MA:0001220 xref: MESH:D013198 xref: NCIT:C33611 xref: Stapedius:muscle xref: UMLS:C0038151 {source="ncithesaurus:Stapedius_Muscle"} xref: VHOG:0000813 is_a: UBERON:0004113 ! muscle of auditory ossicle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png xsd:anyURI property_value: UBPROP:0000003 "The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000813", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.398"} [Term] id: UBERON:0001600 name: tensor tympani namespace: uberon alt_id: UBERON:0005238 def: "The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] subset: uberon_slim synonym: "eustachian muscle" EXACT [] synonym: "M. tensor tympani" RELATED [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] synonym: "musculus tensor tympani" RELATED LATIN [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] synonym: "tensor tympani muscle" EXACT [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] synonym: "tympanic muscle" RELATED [http://en.wikipedia.org/wiki/Tensor_tympani_muscle] xref: EHDAA2:0002002 xref: EHDAA:10167 xref: EHDAA:10191 xref: EMAPA:18587 xref: FMA:49028 xref: GAID:166 xref: http://en.wikipedia.org/wiki/Tensor_tympani_muscle xref: http://linkedlifedata.com/resource/umls/id/C0039529 xref: http://www.snomedbrowser.com/Codes/Details/244779001 xref: MA:0001221 xref: MESH:D013719 xref: NCIT:C33748 xref: UMLS:C0039529 {source="ncithesaurus:Tensor_Tympani"} xref: VHOG:0000698 is_a: UBERON:0004113 ! muscle of auditory ossicle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png xsd:anyURI property_value: UBPROP:0000003 "The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000698", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.333-334 and same reference Table 10-4"} [Term] id: UBERON:0001601 name: extra-ocular muscle namespace: uberon alt_id: UBERON:0006229 def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, http://en.wikipedia.org/wiki/Extraocular_muscles] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "extra-ocular skeletal muscle" EXACT [] synonym: "extraocular muscle" EXACT [FMA:49033] synonym: "extraocular musculature" EXACT [ZFA:0000511] synonym: "extraocular skeletal muscle" EXACT [MA:0001271] synonym: "extrinsic eye muscle" EXACT [OBOL:automatic] synonym: "extrinsic muscle of eyeball" EXACT [FMA:49033] synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482] synonym: "musculi externi bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Extraocular_muscles] xref: AAO:0010028 xref: BTO:0001579 xref: CALOHA:TS-0305 xref: EFO:0001921 xref: EHDAA2:0000482 xref: EHDAA:5729 xref: EMAPA:18234 xref: Extraocular:muscles xref: FMA:49033 xref: http://www.snomedbrowser.com/Codes/Details/181150000 xref: MA:0001271 xref: TAO:0000511 xref: VHOG:0000549 xref: ZFA:0000511 is_a: UBERON:0004277 ! eye muscle relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg xsd:anyURI property_value: IAO:0000116 "todo - resolve discrepancies in which muscles are considered extra-ocular" xsd:string property_value: UBPROP:0000001 "Any of the six small muscles that control movement of the eyeball within the socket. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000549", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/extraocular+muscle"} property_value: UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010028", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these (extrinsic ocular) muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000549", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331"} property_value: UBPROP:0000007 "extraocular" xsd:string property_value: UBPROP:0000008 "Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi." xsd:string property_value: UBPROP:0000011 "Myofibers in extraocular muscles are derived from mesoderm, whereas muscle connective tissue cells arise from neural crest.[PMID:16638982]" xsd:string property_value: UBPROP:0000012 "BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate." xsd:string {external_ontology="BTO"} [Term] id: UBERON:0001602 name: medial rectus extraocular muscle namespace: uberon alt_id: UBERON:0004836 def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_rectus_muscle] comment: Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "m. rectus medialis" EXACT [] synonym: "medial recti" RELATED PLURAL [ZFA:0000301] synonym: "medial rectus" EXACT [FMA:49037] synonym: "medial rectus extraocular muscle" EXACT [MA:0001281] synonym: "medial rectus muscle" EXACT [] synonym: "musculus rectus medialis" EXACT [AAO:0010113] synonym: "musculus rectus medialis bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_rectus_muscle] xref: AAO:0010113 xref: FMA:49037 xref: http://en.wikipedia.org/wiki/Medial_rectus_muscle xref: http://linkedlifedata.com/resource/umls/id/C0582820 xref: http://www.snomedbrowser.com/Codes/Details/181151001 xref: MA:0001281 xref: NCIT:C33068 xref: TAO:0000301 xref: UMLS:C0582820 {source="ncithesaurus:Medial_Rectus_Muscle"} xref: VHOG:0001127 xref: ZFA:0000301 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001127", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331"} [Term] id: UBERON:0001603 name: lateral rectus extra-ocular muscle namespace: uberon alt_id: UBERON:0004837 def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [http://en.wikipedia.org/wiki/Lateral_rectus_muscle] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "lateral extraocular muscle" RELATED [] synonym: "lateral recti" RELATED PLURAL [ZFA:0000383] synonym: "lateral rectus" EXACT [FMA:49038] synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280] synonym: "lateral rectus muscle" EXACT [] synonym: "M. rectus lateralis" EXACT [] synonym: "musculus rectus lateralis" EXACT [AAO:0010107] synonym: "musculus rectus lateralis bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_rectus_muscle] synonym: "posterior rectus" EXACT [ZFA:0000383, ZFIN:ZDB-PUB-970121-6] xref: AAO:0010107 xref: FMA:49038 xref: http://en.wikipedia.org/wiki/Lateral_rectus_muscle xref: http://linkedlifedata.com/resource/umls/id/C0582821 xref: http://www.snomedbrowser.com/Codes/Details/181152008 xref: MA:0001280 xref: NCIT:C32945 xref: TAO:0000383 xref: UMLS:C0582821 {source="ncithesaurus:Lateral_Rectus_Muscle"} xref: VHOG:0001129 xref: ZFA:0000383 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI property_value: UBPROP:0000001 "Cranial nerve VI innervated; lateral in the rectus group.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010107", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001129", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331"} [Term] id: UBERON:0001604 name: levator palpebrae superioris namespace: uberon def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [http://en.wikipedia.org/wiki/Levator_palpebrae_superioris] subset: pheno_slim subset: uberon_slim xref: EMAPA:36652 xref: FMA:49041 xref: http://en.wikipedia.org/wiki/Levator_palpebrae_superioris xref: http://linkedlifedata.com/resource/umls/id/C0224134 xref: http://www.snomedbrowser.com/Codes/Details/244774006 xref: MA:0001272 xref: NCIT:C52802 xref: UMLS:C0224134 {source="ncithesaurus:Levator_Palpebrae_Superioris"} is_a: UBERON:0001601 {source="FMA"} ! extra-ocular muscle relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI [Term] id: UBERON:0001605 name: ciliary muscle namespace: uberon def: "The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [http://en.wikipedia.org/wiki/Ciliary_muscle] subset: pheno_slim subset: uberon_slim synonym: "Bowman`s muscles" RELATED [BTO:0000654] synonym: "ciliaris" RELATED [http://en.wikipedia.org/wiki/Ciliary_muscle] synonym: "musculus ciliaris" RELATED LATIN [http://en.wikipedia.org/wiki/Ciliary_muscle] synonym: "musculus ciliarus" EXACT [BTO:0000654] xref: BTO:0000654 xref: Ciliary:muscle xref: EMAPA:35240 xref: FMA:49151 xref: http://linkedlifedata.com/resource/umls/id/C0559230 xref: http://www.snomedbrowser.com/Codes/Details/280862009 xref: MA:0001269 xref: NCIT:C32315 xref: UMLS:C0559230 {source="ncithesaurus:Ciliary_Muscle"} is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png xsd:anyURI [Term] id: UBERON:0001606 name: muscle of iris namespace: uberon def: "." [http://en.wikipedia.org/wiki/Iris_muscle] subset: uberon_slim synonym: "iris muscle" EXACT [] synonym: "iris muscle organ" EXACT [OBOL:automatic] synonym: "muscle organ of iris" EXACT [OBOL:automatic] xref: EMAPA:35448 xref: FMA:49154 xref: http://www.snomedbrowser.com/Codes/Details/280888007 xref: Iris:muscle xref: MA:0001287 is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle relationship: part_of UBERON:0001769 ! iris property_value: IAO:0000116 "revisit this, see issue #331" xsd:string property_value: UBPROP:0000008 "in aves, stromal mesenchymal cells may migrate to the iris and become skeletal" xsd:string property_value: UBPROP:0000008 "The muscle cells of the iris are smooth muscle in mammals and amphibians, but are striated muscle in birds and reptiles. Many fish have neither, and, as a result, their irides are unable to dilate and contract, so that the pupil always remains of a fixed size[Romer, via WP]" xsd:string [Term] id: UBERON:0001607 name: sphincter pupillae namespace: uberon def: "A sphincter muscle that is part of the iris." [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] subset: uberon_slim synonym: "circular fibers" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "constrictor pupillae" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "iris constrictor" RELATED [] synonym: "iris constrictor muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "iris sphincter" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "iris sphincter muscle" EXACT [BTO:0000656] synonym: "M. sphincter pupillae" EXACT [] synonym: "m. sphincter pupillae" RELATED LATIN [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "musculus sphincter pupillae" EXACT [BTO:0000656] synonym: "pupillary constrictor muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "pupillary sphincter" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "pupillary sphincter muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "sphincter muscle of pupil" EXACT [BTO:0000656] synonym: "sphincter pupillae" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "sphincter pupillae muscle" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] synonym: "spincter pupillae" RELATED [http://en.wikipedia.org/wiki/Iris_sphincter_muscle] xref: BTO:0000656 xref: EMAPA:35788 xref: FMA:49157 xref: http://en.wikipedia.org/wiki/Iris_sphincter_muscle xref: http://linkedlifedata.com/resource/umls/id/C0229189 xref: http://www.snomedbrowser.com/Codes/Details/280889004 xref: MA:0001289 xref: NCIT:C33586 xref: UMLS:C0229189 {source="ncithesaurus:Sphincter_Pupillae_Muscle"} is_a: UBERON:0001606 ! muscle of iris is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png xsd:anyURI property_value: UBPROP:0000008 "In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]" xsd:string property_value: UBPROP:0000008 "WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure" xsd:string property_value: UBPROP:0000009 "constricts iris" xsd:string [Term] id: UBERON:0001608 name: dilatator pupillae namespace: uberon def: "A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]." [http://en.wikipedia.org/wiki/Iris_dilator_muscle] subset: uberon_slim synonym: "dilator muscle of pupil" EXACT [] synonym: "dilator of pupil" EXACT [] synonym: "dilator pupillae" EXACT [] synonym: "dilator pupillae muscle" EXACT [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "dilator pupillae muscle" RELATED [BTO:0001371] synonym: "iris dilator" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "iris dilator muscle" EXACT [BTO:0001371] synonym: "musculus dilatator pupillae" EXACT LATIN [FMA:49158, FMA:TA] synonym: "musculus dilatator pupillae" RELATED LATIN [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "musculus dilator pupillae" RELATED [BTO:0001371] synonym: "pupil dilator" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "pupil dilator muscle" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "pupillary dilator" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "pupillary dilator muscle" EXACT [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "pupillary muscle" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "radial muscle" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "radial muscle of iris" EXACT [http://en.wikipedia.org/wiki/Iris_dilator_muscle] synonym: "radiating fibers" RELATED [http://en.wikipedia.org/wiki/Iris_dilator_muscle] xref: BTO:0001371 xref: EMAPA:35286 xref: FMA:49158 xref: http://en.wikipedia.org/wiki/Iris_dilator_muscle xref: http://linkedlifedata.com/resource/umls/id/C0229190 xref: http://www.snomedbrowser.com/Codes/Details/280890008 xref: MA:0001288 xref: NCIT:C32463 xref: UMLS:C0229190 {source="ncithesaurus:Dilator_Pupillae_Muscle"} is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png xsd:anyURI property_value: UBPROP:0000009 "It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina" xsd:string [Term] id: UBERON:0001610 name: lingual artery namespace: uberon def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [http://en.wikipedia.org/wiki/Lingual_artery] subset: uberon_slim synonym: "arteria lingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Lingual_artery] synonym: "lingual branch of external carotid artery" EXACT [] xref: AAO:0010492 xref: EMAPA:36324 xref: FMA:49526 xref: http://linkedlifedata.com/resource/umls/id/C0226104 xref: http://www.snomedbrowser.com/Codes/Details/181327002 xref: Lingual:artery xref: MA:0001992 xref: NCIT:C52961 xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA xref: UMLS:C0226104 {source="ncithesaurus:Lingual_Artery"} relationship: part_of UBERON:0001723 ! tongue property_value: depicted:by Lingual:artery.PNG xsd:anyURI property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tongue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO"} [Term] id: UBERON:0001611 name: sublingual artery namespace: uberon def: "A branch of the lingual artery that supplies the sublingual gland." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "arteria sublingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Sublingual_artery] synonym: "sublingual branch of lingual artery" EXACT [] xref: AAO:0010491 xref: EMAPA:37115 {source="MA:th"} xref: FMA:49543 xref: http://linkedlifedata.com/resource/umls/id/C0226106 xref: http://www.snomedbrowser.com/Codes/Details/368706006 xref: MA:0002049 xref: NCIT:C53002 xref: Sublingual:artery xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"} relationship: part_of UBERON:0001610 ! lingual artery property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png xsd:anyURI property_value: IAO:0000116 "Check grouping with amphibian structure of the same name" xsd:string property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tip of the snout where branches go to the tongue and the m. geniohyoideus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO", source="AAO:BJB"} property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO"} [Term] id: UBERON:0001620 name: central retinal artery namespace: uberon def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_retinal_artery] subset: uberon_slim synonym: "arteria centralis retinae" RELATED [http://en.wikipedia.org/wiki/Central_retinal_artery] synonym: "arteria centralis retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Central_retinal_artery] synonym: "central artery of retina" EXACT [] synonym: "central artery of the retina" RELATED [http://en.wikipedia.org/wiki/Central_retinal_artery] synonym: "retinal artery" EXACT [] synonym: "Zinn's artery" EXACT [] xref: EMAPA:37113 {source="MA:th"} xref: FMA:49879 xref: GAID:508 xref: http://en.wikipedia.org/wiki/Central_retinal_artery xref: http://linkedlifedata.com/resource/umls/id/C0035301 xref: http://www.snomedbrowser.com/Codes/Details/277771001 xref: MA:0002038 xref: MESH:D012161 xref: NCIT:C52997 xref: UMLS:C0035301 {source="ncithesaurus:Retinal_Artery"} is_a: UBERON:0003501 ! retina blood vessel property_value: depicted:by Gray514:updated.png xsd:anyURI [Term] id: UBERON:0001648 name: vestibulocochlear nerve namespace: uberon def: "Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain." [http://en.wikipedia.org/wiki/Vestibulocochlear_nerve, ISBN:0471209627] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "8n" BROAD ABBREVIATION [BIRNLEX:890, NIFSTD:NeuroNames_abbrevSource] synonym: "acoustic nerve" EXACT [FMA:50869] synonym: "acoustic nerve (Crosby)" EXACT [] synonym: "acoustic VIII nerve" EXACT [] synonym: "CN-VIII" EXACT [] synonym: "cochlear-vestibular nerve" EXACT [] synonym: "cochleovestibular nerve" EXACT [] synonym: "cranial nerve VIII" EXACT [] synonym: "eighth cranial nerve" EXACT [] synonym: "nervus octavus" RELATED LATIN [NeuroNames:553] synonym: "nervus statoacusticus" RELATED LATIN [NeuroNames:553] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "nervus vestibulocochlearis [viii]" EXACT LATIN [FMA:50869, FMA:TA] synonym: "octaval nerve" RELATED [] synonym: "stato-acoustic nerve" EXACT [] synonym: "statoacoustic nerve" RELATED [] synonym: "vestibulocochlear nerve [VIII]" EXACT [] synonym: "vestibulocochlear nerve tree" EXACT [] synonym: "vestibulocochlear VIII nerve" EXACT [] synonym: "VIII nerve" EXACT [] synonym: "VIIIth cranial nerve" EXACT [] xref: AAO:0010473 xref: BAMS:8n xref: BAMS:nVIII xref: BAMS:VIIIn xref: BIRNLEX:890 xref: BTO:0003490 xref: EHDAA2:0002194 xref: EMAPA:17801 xref: FMA:50869 xref: GAID:839 xref: HBA:9331 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=553 {source="BIRNLEX:890"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=553 xref: http://linkedlifedata.com/resource/umls/id/C0001162 xref: http://linkedlifedata.com/resource/umls/id/C1278835 xref: http://www.snomedbrowser.com/Codes/Details/180945001 xref: MA:0001109 xref: MBA:933 xref: MESH:D000159 xref: NCIT:C12996 xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA xref: TAO:0000247 xref: UMLS:C0001162 {source="BIRNLEX:890"} xref: UMLS:C0001162 {source="ncithesaurus:Vestibulocochlear_Nerve"} xref: UMLS:C1278835 {source="BIRNLEX:890"} xref: Vestibulocochlear:nerve xref: VHOG:0000695 xref: XAO:0003095 xref: ZFA:0000247 relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png xsd:anyURI property_value: UBPROP:0000001 "Nerve primarily composed of special somatic afferent fibers innervating the inner ear, and is involved in balance, position, and hearing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010473", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000695", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625"} [Term] id: UBERON:0001673 name: central retinal vein namespace: uberon def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Central_retinal_vein] subset: efo_slim subset: uberon_slim synonym: "retinal vein" EXACT [MA:0002213] synonym: "vena centralis retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Central_retinal_vein] xref: EFO:0004271 xref: EMAPA:37185 {source="MA:th"} xref: FMA:51799 xref: GAID:524 xref: http://en.wikipedia.org/wiki/Central_retinal_vein xref: http://linkedlifedata.com/resource/umls/id/C0035327 xref: http://www.snomedbrowser.com/Codes/Details/280913005 xref: MA:0002213 xref: MESH:D012169 xref: NCIT:C53063 xref: UMLS:C0035327 {source="ncithesaurus:Retinal_Vein"} relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0001681 name: nasal bone namespace: uberon def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [http://en.wikipedia.org/wiki/Nasal_bone, https://github.com/obophenotype/uberon/issues/265, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "adnasal@fr" EXACT [TAO:0000365] synonym: "nasal bones" RELATED PLURAL [ZFA:0000365] synonym: "nasal@fr" EXACT [TAO:0000365] synonym: "nasals" RELATED PLURAL [TAO:0000365] synonym: "os nasale" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_bone] xref: AAO:0000312 xref: EMAPA:19202 xref: FMA:52745 xref: GAID:222 xref: http://linkedlifedata.com/resource/umls/id/C0027422 xref: http://www.snomedbrowser.com/Codes/Details/181801008 xref: MA:0001494 xref: MESH:D009295 xref: Nasal:bone xref: NCIT:C33157 xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA xref: TAO:0000365 xref: UMLS:C0027422 {source="ncithesaurus:Nasal_Bone"} xref: VHOG:0001370 xref: ZFA:0000365 relationship: part_of UBERON:0000004 ! nose property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg xsd:anyURI property_value: UBPROP:0000001 "Paired bone of intramembranous origin that roofs the olfactory capsule.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000312", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000001 "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000365", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: overlaps mesethmoid-nasal joint (TAO:0001677)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000365", ontology="TAO"} property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000312", ontology="AAO"} property_value: UBPROP:0000005 "Synonym adnasal used in Weitzman 1960, and synonym discussed in Vari 1995.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000365", ontology="TAO", source="Curator"} property_value: UBPROP:0000008 "In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X)" xsd:string [Term] id: UBERON:0001686 name: auditory ossicle bone namespace: uberon def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [http://en.wikipedia.org/wiki/Auditory_ossicle, https://github.com/obophenotype/uberon/issues/91] subset: pheno_slim subset: uberon_slim synonym: "auditory bone" EXACT [] synonym: "auditory ossicle" RELATED [MA:0000254] synonym: "ear bone" RELATED [MA:0000254] synonym: "ear ossicle" RELATED [] synonym: "ear ossicles" RELATED PLURAL [] synonym: "middle ear bone" RELATED [] synonym: "middle ear ossicle" EXACT [MP:0005105] synonym: "ossicle" BROAD [EMAPA:17824, http://en.wikipedia.org/wiki/Auditory_ossicle] synonym: "ossicle of ear" RELATED [] synonym: "ossicle of inner ear" RELATED [] synonym: "ossicular chain" RELATED PLURAL [] xref: AAO:0011015 xref: Auditory:ossicle xref: EHDAA2:0001183 xref: EHDAA:5697 xref: EMAPA:17824 xref: EV:0100360 xref: FMA:52750 xref: http://linkedlifedata.com/resource/umls/id/C0013450 xref: http://www.snomedbrowser.com/Codes/Details/181184001 xref: MA:0000254 xref: NCIT:C32164 xref: UMLS:C0013450 {source="ncithesaurus:Auditory_Ossicle"} xref: VHOG:0000461 xref: XAO:0000214 is_a: UBERON:0035130 ! auditory ossicle endochondral element property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg xsd:anyURI property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: IAO:0000116 "This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5." xsd:string property_value: UBPROP:0000001 "The small bones of the middle ear: incus, malleus, and stapes. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/auditory+ossicles"} property_value: UBPROP:0000003 "Additional structural analysis within a phylogenetic context has led to the remarkable discovery that in synapsids, thought to be ancestral to mammals, both the quadrate and articular have become reduced and less firmly articulated with their surrounding bones, reducing their jaw-joint-bearing role. This trend culminated with the incorporation of the quadrate, the columella (which remains articulated with the quadrate), and the articular into the expanded middle ear in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.695"} property_value: UBPROP:0000011 "Studies have shown that ear bones in mammal embryos are attached to the dentary, which is part of the jaw. These are ossified portions of cartilage -- called Meckel's cartilage -- that are attached to the jaw. As the embryo develops, the cartilage hardens to form bone. Later in development, the bone structure breaks loose from the jaw and migrates to the inner ear area. The structure is known as the middle ear, and is made up of the incus, stapes, malleus, and tympanic membrane. These correspond to the quadrate, prearticular, articular, and angular structures in the reptile jaw. For this reason, researchers believe the similarity of the results shows that mammals and reptiles have a common ancestry." xsd:string {source="WP"} [Term] id: UBERON:0001687 name: stapes bone namespace: uberon def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [http://en.wikipedia.org/wiki/Stapes, https://doi.org/10.1111/j.1469-7580.2005.00441.x] subset: pheno_slim subset: uberon_slim synonym: "columella" RELATED SENSU [http://en.wikipedia.org/wiki/Stapes] synonym: "columella auris" RELATED [AAO:0000580] synonym: "columellare" RELATED [AAO:0000580] synonym: "interstapediale" RELATED [AAO:0000580] synonym: "mediostapediale" RELATED [AAO:0000580] synonym: "mesostapediale" RELATED [AAO:0000580] synonym: "os columellare" RELATED [AAO:0000580] synonym: "os intermedium" RELATED [AAO:0000580] synonym: "stapellos" RELATED LATIN [http://en.wikipedia.org/wiki/Stapes] synonym: "stapes" RELATED [AAO:0000580] synonym: "stelidium" RELATED [AAO:0000580] synonym: "stilus columellare" RELATED [AAO:0000580] synonym: "stirrup" EXACT [] xref: EMAPA:18585 xref: FMA:52751 xref: GAID:868 xref: http://en.wikipedia.org/wiki/Stapes xref: http://linkedlifedata.com/resource/umls/id/C0038152 xref: http://www.snomedbrowser.com/Codes/Details/264199009 xref: MA:0001217 xref: MESH:D013199 xref: NCIT:C33612 xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA xref: UMLS:C0038152 {source="ncithesaurus:Stapes"} xref: VHOG:0000688 is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0015016 ! stapes endochondral element property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png xsd:anyURI property_value: UBPROP:0000003 "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)"} property_value: UBPROP:0000008 "'This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.' Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357?[VHOG]." xsd:string property_value: UBPROP:0000011 "As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes." xsd:string {source="https://doi.org/10.1111/j.1469-7580.2005.00441.x"} [Term] id: UBERON:0001688 name: incus bone namespace: uberon def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [http://en.wikipedia.org/wiki/Incus] subset: pheno_slim subset: uberon_slim synonym: "incus" EXACT [MA:0001215] synonym: "incus bone" EXACT [] synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 xref: FMA:52752 xref: GAID:866 xref: http://en.wikipedia.org/wiki/Incus xref: http://linkedlifedata.com/resource/umls/id/C0021181 xref: http://www.snomedbrowser.com/Codes/Details/272649008 xref: MA:0001215 xref: MESH:D007188 xref: NCIT:C32770 xref: UMLS:C0021181 {source="ncithesaurus:Incus"} xref: VHOG:0000689 is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0015017 ! incus endochondral element property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png xsd:anyURI property_value: UBPROP:0000003 "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000689", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948"} [Term] id: UBERON:0001689 name: malleus bone namespace: uberon def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [http://en.wikipedia.org/wiki/Malleus] subset: pheno_slim subset: uberon_slim synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] synonym: "malleus" BROAD [MA:0001216] synonym: "malleus" EXACT LATIN [http://en.wikipedia.org/wiki/Malleus] xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 xref: http://en.wikipedia.org/wiki/Malleus xref: http://linkedlifedata.com/resource/umls/id/C0024631 xref: http://www.snomedbrowser.com/Codes/Details/264090005 xref: MA:0001216 xref: MESH:D008307 xref: NCIT:C33051 xref: UMLS:C0024631 {source="ncithesaurus:Malleus"} xref: VHOG:0000690 is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0015018 ! malleus endochondral element property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png xsd:anyURI property_value: UBPROP:0000003 "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000690", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948"} [Term] id: UBERON:0001690 name: ear namespace: uberon def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, http://en.wikipedia.org/wiki/Ear] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "auditory apparatus" RELATED [] synonym: "auris" RELATED [BTO:0000368] xref: AAO:0011014 xref: BIRNLEX:1062 xref: BTO:0000368 xref: CALOHA:TS-1165 xref: EFO:0000826 xref: EHDAA2:0000423 xref: EHDAA:502 xref: EMAPA:16193 xref: EV:0100353 xref: FMA:52780 xref: GAID:62 xref: galen:Ear xref: http://en.wikipedia.org/wiki/Ear xref: http://linkedlifedata.com/resource/umls/id/C0013443 xref: http://linkedlifedata.com/resource/umls/id/C0521421 xref: http://www.snomedbrowser.com/Codes/Details/1910005 xref: MA:0000236 xref: MAT:0000138 xref: MESH:D004423 xref: MIAA:0000138 xref: NCIT:C12394 xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA xref: UMLS:C0013443 {source="ncithesaurus:Ear"} xref: UMLS:C0013443 {source="BIRNLEX:1062"} xref: UMLS:C0521421 {source="BIRNLEX:1062"} xref: VHOG:0000330 xref: XAO:0000189 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg xsd:anyURI property_value: UBPROP:0000001 "The organ of hearing and of equilibrium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000330", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/ear"} property_value: UBPROP:0000003 "Both vertebrate and invertebrate auditory organs are thought to have evolved from primitive mechanosensors, but the nature of the ancestral structure and the evolutionary trajectories followed in distinct animal lineages remain unknown. In particular, we do not know how many types of mechanosensor existed in the protostome-deuterostome ancestor from which insects and vertebrates evolved or whether the PDA had an auditory organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000330", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1002/dvdy.20207 Boekhoff-Falk G, Hearing in Drosophila: Development of Johnston's organ and emerging parallels to vertebrate ear development. Developmental Dynamics (2005)"} property_value: UBPROP:0000007 "auricular" xsd:string [Term] id: UBERON:0001691 name: external ear namespace: uberon def: "Part of the ear external to the tympanum (eardrum). It typically consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, http://en.wikipedia.org/wiki/External_ear] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "auricular region" BROAD [] synonym: "auricular region of head" EXACT [] synonym: "auris externa" RELATED [BTO:0002100] synonym: "outer ear" EXACT [MA:0000258] xref: AAO:0011037 xref: BIRNLEX:1705 xref: BTO:0002100 xref: EFO:0004221 xref: EHDAA2:0000462 xref: EHDAA:3786 xref: EMAPA:16991 xref: EV:0100354 xref: External:ear xref: FMA:52781 xref: GAID:104 xref: http://linkedlifedata.com/resource/umls/id/C0013453 xref: http://linkedlifedata.com/resource/umls/id/C1269548 xref: http://www.snomedbrowser.com/Codes/Details/420893000 xref: MA:0000258 xref: MAT:0000147 xref: MESH:D004431 xref: MIAA:0000147 xref: NCIT:C12292 xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA xref: UMLS:C0013453 {source="ncithesaurus:External_Ear"} xref: UMLS:C0013453 {source="BIRNLEX:1705"} xref: UMLS:C1269548 {source="BIRNLEX:1705"} xref: VHOG:0000311 xref: XAO:0000190 relationship: part_of UBERON:0001690 ! ear property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/29/Gray907.png xsd:anyURI property_value: UBPROP:0000001 "The external part of the organ, which consists of an outer portion (external auditory meatus) which leads to the tympanum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000311", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "Some species, like Amolops tormotus (Feng et al. 2006), have a cavity in front of the tympanic membrane which is considered to be an ear canal and thus an outer ear. (...) The ancestral lineage of amphibians separated from the mammalian lineage, approximately 350 million years ago, in the paleozoic era. Many of the important developments in the auditory systems emerged after the ancestral paths separated (Manley and Clack 2003). This implies that shared features, like the tympanic middle ear, developed independently in different vertebrate lineages.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000311", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1007/s00359-008-0327-1 Schoffelen RLM, Segenhout JM, Van Dijk P, Mechanics of the exceptional anuran ear. Journal of Comparative Physiology A (2008)"} property_value: UBPROP:0000012 "in XAO this includes and is only the tympanum" xsd:string {external_ontology="XAO"} [Term] id: UBERON:0001706 name: nasal septum namespace: uberon def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Nasal_septum] subset: pheno_slim subset: uberon_slim synonym: "septal cartilage" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] synonym: "septum mobile nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] synonym: "septum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_septum] synonym: "septum nasi" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] synonym: "septum of the nose" RELATED [http://en.wikipedia.org/wiki/Nasal_septum] xref: AAO:0000559 xref: AAO:0010135 xref: EHDAA2:0001234 xref: EHDAA2:0004104 xref: EHDAA:6809 xref: EMAPA:17608 xref: FMA:54375 xref: GAID:115 xref: http://linkedlifedata.com/resource/umls/id/C0027432 xref: http://www.snomedbrowser.com/Codes/Details/181197004 xref: MA:0000285 xref: MESH:A02.165.639 xref: Nasal:septum xref: NCIT:C33160 xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA xref: UMLS:C0027432 {source="ncithesaurus:Nasal_Septum"} xref: VHOG:0000017 relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png xsd:anyURI property_value: IAO:0000116 "We follow AAO in making this part of the nasal skeleton" xsd:string property_value: UBPROP:0000001 "A median dividing wall, sagittally directed, which divides the nasal cavity into the right and the left nasal fossae. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000017", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000001 "Medial vertical wall between nasal capsules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010135", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "Medial, vertical plate that separates the nasal capsules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000559", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000003 "Whatever the common ancestor of the lamprey and gnathostomes may have looked like, it most likely possessed a neural-crest-derived premandibular ectomesenchyme closely associated with the NHP. Invention of the jaw subsequently required a space for the nasal septum and maxillary process to develop, which might have been provided by subdivision of the NHP into the nasal placode and the hypophysis (diplorhiny, the state of bilaterally separated nasal openings, would also have been a prerequisite for this).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000017", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1098/rstb.2001.0976 Kuratani S, Nobusada Y, Horigome N, Shigetani Y, Embryology of the lamprey and evolution of the vertebrate jaw: insights from molecular and developmental perspectives. Philosophical transactions of the Royal Society of London (2001)"} [Term] id: UBERON:0001707 name: nasal cavity namespace: uberon def: "An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cavitas nasalis" RELATED [BTO:0002096] synonym: "cavitas nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_cavity] synonym: "cavitas nasi" RELATED [BTO:0002096] synonym: "cavity of nose" EXACT [] synonym: "cavity of olfactory apparatus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "cavum nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Nasal_cavity] synonym: "nasal canal" EXACT [ZFA:0000130] synonym: "nasal conduit space" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "nasal fossa" EXACT [http://en.wikipedia.org/wiki/Nasal_cavity] synonym: "nasal pit" RELATED [] synonym: "olfactory cavity" RELATED [] synonym: "olfactory chamber" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory chamber cavity" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130] xref: AAO:0000314 xref: BTO:0002096 xref: EHDAA2:0001226 xref: EHDAA:6801 xref: EMAPA:17604 xref: FMA:54378 xref: GAID:350 xref: http://linkedlifedata.com/resource/umls/id/C0027423 xref: http://www.snomedbrowser.com/Codes/Details/263481003 xref: MA:0000284 xref: MESH:D009296 xref: Nasal:cavity xref: NCIT:C12424 xref: TAO:0000130 xref: UMLS:C0027423 {source="ncithesaurus:Nasal_Cavity"} xref: VHOG:0000271 xref: ZFA:0000130 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0015788 {source="cjm"} ! olfactory apparatus chamber property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg xsd:anyURI property_value: IAO:0000116 "define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong." xsd:string property_value: UBPROP:0000001 "a large air filled space above and behind the nose in the middle of the face[WP][Wikipedia:Nasal_cavity]." xsd:string {source="Nasal:cavity"} property_value: UBPROP:0000001 "Saclike space internal to the nasal capsule lined by respiratory and sensory epithelium and glandular tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000314", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000003 "Despite significant modification to the nasal cavity within Archosauria and its extreme hypertrophy and supraorbital development in Lambeosaurinae, the neural olfactory system and the olfactory region of the nasal cavity proper retain their plesiomorphic positions and associations, suggesting that this system is highly conserved in vertebrate evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000271", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1666/0094-8373(2006)032[0109:NCHACC]2.0.CO;2 Evans DC, Nasal cavity homologies and cranial crest function in lambeosaurine dinosaurs. Paleobiology (2006)"} property_value: UBPROP:0000008 "in humans, the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures" xsd:string {source="HP"} [Term] id: UBERON:0001711 name: eyelid namespace: uberon def: "A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane" [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "blephara" RELATED PLURAL [] synonym: "blepharon" EXACT [] synonym: "eye lid" EXACT [] synonym: "palpebra" EXACT [] synonym: "palpebrae" RELATED PLURAL [] xref: BTO:0002241 xref: EHDAA2:0000487 xref: EHDAA:9037 xref: EMAPA:17829 xref: EV:0100338 xref: FMA:54437 xref: GAID:72 xref: http://en.wikipedia.org/wiki/Eyelid xref: http://linkedlifedata.com/resource/umls/id/C0015426 xref: http://www.snomedbrowser.com/Codes/Details/265782007 xref: MA:0000268 xref: MESH:D005143 xref: NCIT:C12713 xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA xref: UMLS:C0015426 {source="ncithesaurus:Eyelid"} xref: VHOG:0000016 relationship: part_of UBERON:0000019 {source="multiple"} ! camera-type eye property_value: depicted:by Eye:makeup.jpg xsd:anyURI property_value: UBPROP:0000007 "blepharic" xsd:string property_value: UBPROP:0000007 "palpebral" xsd:string property_value: UBPROP:0000008 "In humans the upper and lower eyelid consists of the following layers, starting anteriorly: (1) skin, (2) a layer of subcutaneous connective tissue, (3) a layer of striated muscle fibres of the orbicularis muscle, (4) a layer of submuscular connective tissue, (5) a fibrous layer, including the tarsal plates, (6) a layer of smooth muscle, (7) the palpebral conjunctiva." xsd:string property_value: UBPROP:0000012 "Consider adding 'eye surface', like MA" xsd:string {external_ontology="MA"} property_value: UBPROP:0000012 "FMA divides this into skin, fascia, conjunctiva" xsd:string {external_ontology="FMA"} property_value: UBPROP:0000202 FMA:75178 [Term] id: UBERON:0001712 name: upper eyelid namespace: uberon subset: pheno_slim subset: uberon_slim synonym: "palpebra superior" EXACT LATIN [FMA:54439, FMA:TA] synonym: "superior eyelid" EXACT [] xref: EHDAA2:0002115 xref: EHDAA:9047 xref: EMAPA:17834 xref: FMA:54439 xref: http://linkedlifedata.com/resource/umls/id/C0585636 xref: http://www.snomedbrowser.com/Codes/Details/244499008 xref: MA:0001267 xref: NCIT:C49581 xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA xref: UMLS:C0585636 {source="ncithesaurus:Upper_Eyelid"} xref: VHOG:0000389 is_a: UBERON:0001711 ! eyelid property_value: depicted:by Eye:makeup.jpg xsd:anyURI property_value: UBPROP:0000003 "A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000389", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.431"} [Term] id: UBERON:0001713 name: lower eyelid namespace: uberon subset: pheno_slim subset: uberon_slim synonym: "inferior eyelid" EXACT [] synonym: "palpebra inferior" EXACT LATIN [FMA:54442, FMA:TA] xref: AAO:0010349 xref: EHDAA2:0001015 xref: EHDAA:9041 xref: EMAPA:17831 xref: FMA:54442 xref: http://linkedlifedata.com/resource/umls/id/C0229258 xref: http://www.snomedbrowser.com/Codes/Details/362528002 xref: MA:0001263 xref: NCIT:C49580 xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA xref: UMLS:C0229258 {source="ncithesaurus:Lower_Eyelid"} xref: VHOG:0000388 xref: XAO:0000007 is_a: UBERON:0001711 ! eyelid property_value: depicted:by Eye:makeup.jpg xsd:anyURI property_value: UBPROP:0000003 "A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000388", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.431"} [Term] id: UBERON:0001721 name: inferior vestibular nucleus namespace: uberon def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [http://en.wikipedia.org/wiki/Inferior_vestibular_nucleus] subset: uberon_slim synonym: "descending vestibular nucleus" EXACT [FMA:54608] synonym: "nucleus vestibularis inferior" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_vestibular_nucleus] synonym: "spinal vestibular nucleus" EXACT [FMA:54608] xref: BAMS:IVe xref: BAMS:SPIV xref: BAMS:SpVe xref: BAMS:SPVN xref: BM:Me-VS-VSI xref: BTO:0004369 xref: EMAPA:35797 xref: EV:0100258 xref: FMA:54608 xref: HBA:9702 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=718 xref: http://en.wikipedia.org/wiki/Inferior_vestibular_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0175498 xref: http://www.snomedbrowser.com/Codes/Details/280175006 xref: MA:0001054 xref: MBA:225 xref: NCIT:C33591 xref: UMLS:C0175498 {source="ncithesaurus:Spinal_Vestibular_Nucleus"} is_a: UBERON:0007228 ! vestibular nucleus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png xsd:anyURI [Term] id: UBERON:0001722 name: medial vestibular nucleus namespace: uberon def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [http://en.wikipedia.org/wiki/Medial_vestibular_nucleus] subset: uberon_slim synonym: "chief vestibular nucleus" EXACT [FMA:54611] synonym: "dorsal vestibular nucleus" EXACT [FMA:54611] synonym: "medial nucleus" RELATED [http://en.wikipedia.org/wiki/Medial_vestibular_nucleus] synonym: "nucleus of Schwalbe" EXACT [FMA:54611] synonym: "nucleus triangularis" EXACT LATIN [FMA:54611, FMA:TA] synonym: "nucleus vestibularis medialis" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_vestibular_nucleus] synonym: "principal vestibular nucleus" EXACT [FMA:54611] synonym: "Schwalbe's nucleus" EXACT [FMA:54611] synonym: "triangular nucleus" EXACT [FMA:54611] xref: BAMS:MV xref: BAMS:MVe xref: BAMS:MVN xref: BAMS:VMN xref: BM:Me-VS-VSM xref: BTO:0004371 xref: DHBA:12581 xref: EMAPA:35554 xref: FMA:54611 xref: HBA:9700 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=717 xref: http://en.wikipedia.org/wiki/Medial_vestibular_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0036385 xref: http://www.snomedbrowser.com/Codes/Details/280174005 xref: MA:0001048 xref: MBA:202 xref: NCIT:C33069 xref: PBA:10125 xref: UMLS:C0036385 {source="ncithesaurus:Medial_Vestibular_Nucleus"} is_a: UBERON:0007228 ! vestibular nucleus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg xsd:anyURI [Term] id: UBERON:0001723 name: tongue namespace: uberon def: "A muscular organ in the floor of the mouth." [FEED:rd, https://github.com/obophenotype/uberon/issues/256] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "glossus" RELATED [http://en.wikipedia.org/wiki/Tongue] xref: AAO:0010360 xref: BTO:0001385 xref: CALOHA:TS-1050 xref: EFO:0000833 xref: EHDAA2:0002062 xref: EHDAA:9144 xref: EMAPA:17185 xref: EV:0100058 xref: FMA:54640 xref: GAID:816 xref: http://en.wikipedia.org/wiki/Tongue xref: http://linkedlifedata.com/resource/umls/id/C0040408 xref: http://www.snomedbrowser.com/Codes/Details/181226008 xref: MA:0000347 xref: MAT:0000040 xref: MESH:D014059 xref: MIAA:0000040 xref: NCIT:C12422 xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ xref: TAO:0005333 xref: UMLS:C0040408 {source="ncithesaurus:Tongue"} xref: VHOG:0000419 xref: XAO:0000446 xref: ZFA:0005333 is_a: UBERON:0000020 {source="GO"} ! sense organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg xsd:anyURI property_value: IAO:0000116 "in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence." xsd:string property_value: UBPROP:0000001 "A mobile mass of muscular tissue that is covered with mucous membrane, occupies much of the cavity of the mouth, forms part of its floor, bears the organ of taste, and assists in chewing and swallowing. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000419", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/tongue"} property_value: UBPROP:0000001 "Muscular organ in the floor of the mouth.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: UBPROP:0000001 "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO][GO:0043586]." xsd:string {source="GO:0043586"} property_value: UBPROP:0000003 "Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000419", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1046/j.1469-7580.2002.00073.x Iwasaki S, Evolution of the structure and function of the vertebrate tongue. J Anat (2002)"} property_value: UBPROP:0000007 "glossal" xsd:string property_value: UBPROP:0000007 "lingual" xsd:string property_value: UBPROP:0000008 "Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods" xsd:string property_value: UBPROP:0000011 "The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions" xsd:string [Term] id: UBERON:0001726 name: papilla of tongue namespace: uberon subset: pheno_slim synonym: "lingual papilla" EXACT [] synonym: "tongue papilla" EXACT [] xref: BIRNLEX:4102 xref: EMAPA:32777 xref: FMA:54819 xref: http://linkedlifedata.com/resource/umls/id/C0226964 xref: http://linkedlifedata.com/resource/umls/id/C1289183 xref: http://www.snomedbrowser.com/Codes/Details/368728006 xref: MA:0001593 xref: NCIT:C33258 xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"} xref: UMLS:C0226964 {source="BIRNLEX:4102"} xref: UMLS:C1289183 {source="BIRNLEX:4102"} is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0005020 ! mucosa of tongue relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue [Term] id: UBERON:0001727 name: taste bud namespace: uberon def: "A specialized receptor organ that is a collection of cells spanning the gustatory epithelium." [http://periowiki.wikispot.org/Taste_bud_histology] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caliculus gustatorius" RELATED LATIN [http://en.wikipedia.org/wiki/Taste_bud] synonym: "caliculus gustatorius" RELATED PLURAL [http://en.wikipedia.org/wiki/Taste_bud] synonym: "taste buds" RELATED PLURAL [http://en.wikipedia.org/wiki/Taste_bud] synonym: "taste-bud" RELATED [http://en.wikipedia.org/wiki/Taste_bud] synonym: "tastebud" EXACT [http://en.wikipedia.org/wiki/Taste_bud] synonym: "tastebuds" RELATED PLURAL [http://en.wikipedia.org/wiki/Taste_bud] xref: AAO:0010573 xref: BIRNLEX:4101 xref: BTO:0000989 xref: CALOHA:TS-1015 xref: EMAPA:35850 xref: FMA:54825 xref: GAID:815 xref: http://linkedlifedata.com/resource/umls/id/C0039337 xref: http://www.snomedbrowser.com/Codes/Details/362099006 xref: MA:0001591 xref: MESH:A08.800.550.700.120.800 xref: NCIT:C96518 xref: nifext:14 xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA xref: TAO:0001074 xref: Taste:bud xref: UMLS:C0039337 {source="ncithesaurus:Taste_Bud"} xref: UMLS:C0039337 {source="BIRNLEX:4101"} xref: VHOG:0000130 xref: XAO:0000445 xref: ZFA:0001074 is_a: UBERON:0003212 ! gustatory organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png xsd:anyURI property_value: UBPROP:0000001 "A chemoreceptive organ.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010573", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "One of a number of receptor cell nests located in the epithelium of the papillae of the tongue and in the soft palate, epiglottis, and pharynx that mediate the sense of taste. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/taste+bud"} property_value: UBPROP:0000003 "Experients in amphibia have shown that an intrinsic feature of the pharyngeal endoderm is its ability to generate taste buds and this capacity must have been acquired by the endoderm at the origin of the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)"} property_value: UBPROP:0000008 "In humans, saste buds may be found on the tongue, soft palatte, epiglottis and upper pharynx. In other species they may be found in more unusual places, such as the trunk, or on the barbels or fins of fish." xsd:string property_value: UBPROP:0000011 "arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN:1607950324 (todo - request cell terms from CL)" xsd:string [Term] id: UBERON:0001750 name: lacrimal apparatus namespace: uberon def: "A network of orbital structures of the eye that secrete and drain tears from the surface of the eyeball into the nasal cavity; these parts include the lacrimal glands, lacrimal lake, lacrimal ducts, lacrimal canals, lacrimal sacs, nasolacrimal ducts, and lacrimal puncta." [MGI:anna] subset: pheno_slim subset: uberon_slim synonym: "apparatus lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_apparatus] synonym: "lacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "lacrymal system" EXACT [MGI:anna] synonym: "nasolacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "nasolacrimal system" RELATED [HPO:pr] xref: EMAPA:35462 xref: FMA:55605 xref: GAID:901 xref: http://linkedlifedata.com/resource/umls/id/C0022903 xref: Lacrimal:apparatus xref: MA:0000274 xref: MESH:D007765 xref: NCIT:C32905 xref: UMLS:C0022903 {source="ncithesaurus:Lacrimal_Apparatus"} is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI property_value: IAO:0000116 "TODO - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal" xsd:string property_value: UBPROP:0000012 "this is an eye appendage in ncit, along with eyelid and eyebrow. in MA, part of eye surface part_of eye" xsd:string {external_ontology="ncit"} [Term] id: UBERON:0001756 name: middle ear namespace: uberon def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, http://en.wikipedia.org/wiki/Middle_ear] subset: pheno_slim subset: uberon_slim synonym: "auris media" RELATED LATIN [http://en.wikipedia.org/wiki/Middle_ear] synonym: "auris media" RELATED [BTO:0002099] xref: AAO:0011065 xref: BIRNLEX:1695 xref: BTO:0002099 xref: CALOHA:TS-2233 xref: EHDAA2:0001181 xref: EHDAA:5693 xref: EMAPA:17000 xref: EV:0100357 xref: FMA:56513 xref: GAID:165 xref: http://linkedlifedata.com/resource/umls/id/C0013455 xref: http://linkedlifedata.com/resource/umls/id/C1268972 xref: http://www.snomedbrowser.com/Codes/Details/181185000 xref: MA:0000253 xref: MAT:0000146 xref: MESH:D004432 xref: MIAA:0000146 xref: Middle:ear xref: NCIT:C12274 xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA xref: UMLS:C0013455 {source="BIRNLEX:1695"} xref: UMLS:C0013455 {source="ncithesaurus:Middle_Ear"} xref: UMLS:C1268972 {source="BIRNLEX:1695"} xref: VHOG:0000312 xref: XAO:0000191 relationship: part_of UBERON:0001690 ! ear property_value: UBPROP:0000001 "The intermediate portion of the ear which consists of a small air-filled and membrane-lined chamber. It is lodged in the temporal bone and continues with the nasopharynx through the Eustachian tube. It is separated from the external ear by the tympanic membrane and from the inner ear by the fenestrae. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000312", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000312", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417"} [Term] id: UBERON:0001757 name: pinna namespace: uberon def: "The part of the ear that projects from the head, connecting to the external acoustic meatus." [http://en.wikipedia.org/wiki/Pinna_(anatomy), http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "auricle" EXACT [] synonym: "auricle of ear" EXACT [] synonym: "auricle of external ear" EXACT [] synonym: "auricula" EXACT [http://en.wikipedia.org/wiki/Auricula] synonym: "auricula (auris externa)" EXACT [] synonym: "pinna of ear" EXACT [] synonym: "pinnae" RELATED PLURAL [] xref: EHDAA2:0001467 xref: EMAPA:17589 xref: EV:0100355 xref: FMA:56580 xref: galen:Auricle xref: http://linkedlifedata.com/resource/umls/id/C0928075 xref: http://www.snomedbrowser.com/Codes/Details/421159007 xref: MA:0000259 xref: NCIT:C32165 xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA xref: Pinna:(anatomy) xref: UMLS:C0928075 {source="ncithesaurus:Auricle"} xref: VHOG:0000460 relationship: part_of UBERON:0001691 ! external ear property_value: UBPROP:0000001 "The external expanded part of the ear characterized by a funnel-shaped structure through which the sound vibrations are received. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000460", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "Mammals have a third type of tympanic ear. An external flap, the auricle or pinna, helps funnel sound waves down the external acoustic meatus to the tympanic membrane.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000460", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.420"} property_value: UBPROP:0000008 "In various species, the pinna can also signal mood and radiate heat" xsd:string property_value: UBPROP:0000009 "The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch)." xsd:string [Term] id: UBERON:0001766 name: anterior chamber of eyeball namespace: uberon def: "the space in the eye, filled with aqueous humor, and bounded anteriorly by the cornea and a small portion of the sclera and posteriorly by a small portion of the ciliary body, the iris, and part of the crystalline lens" [MESH:A09.371.060.067, MP:0005205] subset: pheno_slim synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709] synonym: "anterior chamber of eye" EXACT [] synonym: "camera anterior" EXACT [] synonym: "camera anterior bulbi" RELATED [BTO:0002084] synonym: "camera anterior bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_chamber_of_eyeball] synonym: "camera oculi anterior" RELATED [BTO:0002084] synonym: "eye anterior chamber" EXACT [] xref: BTO:0002084 xref: EHDAA2:0000129 xref: EHDAA:9033 xref: EMAPA:18231 xref: FMA:58078 xref: GAID:889 xref: http://en.wikipedia.org/wiki/Anterior_chamber_of_eyeball xref: http://linkedlifedata.com/resource/umls/id/C0003151 xref: http://www.snomedbrowser.com/Codes/Details/181160009 xref: MA:0000262 xref: MESH:D000867 xref: NCIT:C12667 xref: UMLS:C0003151 {source="ncithesaurus:Anterior_Chamber_of_the_Eye"} xref: VHOG:0001431 is_a: UBERON:0006311 {source="FMA"} ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: UBPROP:0000001 "The part of the eyeball between the cornea and the iris, filled with aqueous humor. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001431", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/anterior+chamber"} property_value: UBPROP:0000012 "space in EHDAA2 - consider adding Cavity of anterior chamber of eyeball" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0001767 name: posterior chamber of eyeball namespace: uberon def: "the ring-like space, filled with aqueous humor, between the iris/pupil anteriorly and the lens and ciliary body posteriorly" [ISBN:0-683-40008-8, MP:0005299] comment: The posterior chamber should not be confused with vitreous chamber. subset: pheno_slim synonym: "c. posterior bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_chamber_of_eyeball] synonym: "camera oculi posterior" RELATED [BTO:0002086] synonym: "camera posterior" EXACT [] synonym: "camera posterior bulbi" RELATED [BTO:0002086] synonym: "eye posterior chamber" EXACT [] synonym: "posterior chamber of eye" EXACT [] xref: BTO:0002086 xref: FMA:58080 xref: http://en.wikipedia.org/wiki/Posterior_chamber_of_eyeball xref: http://linkedlifedata.com/resource/umls/id/C0229094 xref: http://www.snomedbrowser.com/Codes/Details/362504004 xref: MA:0002460 xref: NCIT:C12900 xref: OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA xref: UMLS:C0229094 {source="ncithesaurus:Posterior_Chamber_of_the_Eye"} is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001801 ! anterior segment of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI [Term] id: UBERON:0001768 name: uvea namespace: uberon def: "the pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]." [http://en.wikipedia.org/wiki/Uvea, MP:0005197] subset: pheno_slim subset: uberon_slim synonym: "pars iridica retinae" RELATED [http://en.wikipedia.org/wiki/Uvea] synonym: "tunica vasculatis oculi" RELATED [http://en.wikipedia.org/wiki/Uvea] synonym: "tunica vasculosa bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Uvea] synonym: "tunica vasculosa of eyeball" EXACT [FMA:58103] synonym: "uvea" EXACT [FMA:58103] synonym: "uveal tract" EXACT [FMA:58103] synonym: "vascular layer of eyeball" RELATED [FMA:58103] xref: CALOHA:TS-2228 xref: EMAPA:35901 xref: FMA:58103 xref: GAID:912 xref: http://en.wikipedia.org/wiki/Uvea xref: http://linkedlifedata.com/resource/umls/id/C0042160 xref: http://www.snomedbrowser.com/Codes/Details/280648000 xref: MA:0002480 xref: MESH:D014602 xref: NCIT:C12811 xref: UMLS:C0042160 {source="ncithesaurus:Uvea"} relationship: part_of UBERON:0001801 ! anterior segment of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png xsd:anyURI property_value: IAO:0000116 "TODO - check child terms, isa vs partof. See also MA:0001284 ! tunica vasculosa plexus" xsd:string property_value: RO:0002175 NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} property_value: UBPROP:0000007 "uveal" xsd:string [Term] id: UBERON:0001769 name: iris namespace: uberon def: "the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye" [ISBN:0-683-40008-8, MP:0001322] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] synonym: "irides" RELATED PLURAL [] synonym: "irises" RELATED PLURAL [VHOG:0000101] xref: AAO:0010347 xref: BTO:0000653 xref: CALOHA:TS-0491 xref: EFO:0004245 xref: EMAPA:19154 xref: EV:0100345 xref: FMA:58235 xref: GAID:917 xref: http://linkedlifedata.com/resource/umls/id/C0022077 xref: http://www.snomedbrowser.com/Codes/Details/181164000 xref: Iris:(anatomy) xref: MA:0000273 xref: MESH:D007498 xref: NCIT:C12737 xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA xref: TAO:0001238 xref: UMLS:C0022077 {source="ncithesaurus:Iris"} xref: VHOG:0000101 xref: XAO:0000185 xref: ZFA:0001238 relationship: part_of UBERON:0011892 ! anterior uvea property_value: UBPROP:0000001 "The opaque muscular contractile diaphragm suspended in the aqueous humour in front of the lens of the eye. The organ is perforated by the pupil and continues peripherally with the ciliary body. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000101", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000101", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)"} property_value: UBPROP:0000007 "iridial" xsd:string property_value: UBPROP:0000008 "The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development [DOI:dx.doi.org/10.1006/dbio.1998.9019]" xsd:string [Term] id: UBERON:0001770 name: lacrimal canaliculus namespace: uberon def: "The part of the lacrimal duct that connects the lacrimal punctum to the lacrimal sac." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "canaliculus lacrimalis" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_canaliculi] xref: EMAPA:37624 {source="MA:th"} xref: FMA:58245 xref: http://linkedlifedata.com/resource/umls/id/C0459631 xref: http://www.snomedbrowser.com/Codes/Details/263348000 xref: Lacrimal:canaliculi xref: MA:0001294 xref: NCIT:C32907 xref: UMLS:C0459631 {source="ncithesaurus:Lacrimal_Canaliculus"} relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system property_value: IAO:0000116 "TODO - resolve lacrimal canaliculus vs lacrimal duct" xsd:string [Term] id: UBERON:0001771 name: pupil namespace: uberon def: "the central circular aperture of the iris through which light rays enter the eye" [ISBN:0-683-40008-8, MP:0001317] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "pupils" RELATED PLURAL [ZFA:0001283] xref: AAO:0010351 xref: FMA:58252 xref: GAID:918 xref: http://en.wikipedia.org/wiki/Pupil xref: http://linkedlifedata.com/resource/umls/id/C0034121 xref: http://www.snomedbrowser.com/Codes/Details/35146001 xref: MA:0001292 xref: MESH:D011680 xref: NCIT:C33429 xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA xref: TAO:0001283 xref: UMLS:C0034121 {source="ncithesaurus:Pupil"} xref: VHOG:0000116 xref: XAO:0000283 xref: ZFA:0001283 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001769 ! iris property_value: depicted:by Eye:iris.jpg xsd:anyURI property_value: UBPROP:0000001 "The circular orifice in the centre of the iris, through which light enters into the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000116", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000116", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)"} [Term] id: UBERON:0001772 name: corneal epithelium namespace: uberon def: "the smooth stratified squamous epithelium that covers the outer surface of the cornea" [MESH:A09.371.060.217.325, MGI:smb, MP:0006000] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior corneal epithelium" EXACT [] synonym: "anterior endothelium of cornea" RELATED [BTO:0000287] synonym: "cornea epithelial tissue" EXACT [OBOL:automatic] synonym: "cornea epithelium" EXACT [OBOL:automatic] synonym: "e. anterius corneae" RELATED LATIN [http://en.wikipedia.org/wiki/Corneal_epithelium] synonym: "endothelium anterius corneae" RELATED [BTO:0000287] synonym: "endothelium camerae anterioris bulbi" RELATED [BTO:0000287] synonym: "endothelium corneale" RELATED [BTO:0000287] synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic] synonym: "epithelium anterius (cornea)" EXACT [] synonym: "epithelium anterius corneae" EXACT LATIN [FMA:58263, FMA:TA] synonym: "epithelium corneæ anterior layer" EXACT [] synonym: "epithelium of cornea" EXACT [] synonym: "epithelium posterius corneae" RELATED [BTO:0000287] synonym: "external epithelium of cornea" EXACT [] xref: BTO:0000287 xref: CALOHA:TS-0173 xref: Corneal:epithelium xref: EFO:0001917 xref: EHDAA2:0000319 xref: EMAPA:17162 xref: FMA:58263 xref: GAID:895 xref: http://linkedlifedata.com/resource/umls/id/C0459875 xref: http://www.snomedbrowser.com/Codes/Details/368825001 xref: MA:0001243 xref: MESH:D019573 xref: NCIT:C12928 xref: TAO:0002187 xref: UMLS:C0459875 {source="ncithesaurus:Corneal_Epithelium"} xref: ZFA:0001683 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0000964 ! cornea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png xsd:anyURI property_value: UBPROP:0000001 "Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002187", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"} property_value: UBPROP:0000008 "In Humans: It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei" xsd:string property_value: UBPROP:0000008 "In zebrafish: nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals" xsd:string [Term] id: UBERON:0001773 name: sclera namespace: uberon def: "Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]." [http://en.wikipedia.org/wiki/Sclera, ZFIN:ZDB-PUB-050701-15] comment: Disease notes: implicated in rheumatoid arthritis. subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "scleral capsule" RELATED [] xref: AAO:0010354 xref: BTO:0001606 xref: EMAPA:19027 xref: EV:0100342 xref: FMA:58269 xref: GAID:911 xref: http://en.wikipedia.org/wiki/Sclera xref: http://linkedlifedata.com/resource/umls/id/C0036410 xref: http://www.snomedbrowser.com/Codes/Details/181163006 xref: MA:0000280 xref: MESH:D012590 xref: NCIT:C12784 xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA xref: UMLS:C0036410 {source="ncithesaurus:Sclera"} xref: VHOG:0001274 xref: XAO:0000183 xref: ZFA:0005563 relationship: part_of UBERON:0012430 {source="FMA"} ! tunica fibrosa of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: UBPROP:0000001 "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted][Wikipedia:Sclera]." xsd:string {source="http://en.wikipedia.org/wiki/Sclera"} property_value: UBPROP:0000001 "The tough, usually white, outer coat of the eyeball, covering all the posterior surface and continuous anteriorly with the cornea. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001274", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/sclera"} property_value: UBPROP:0000007 "scleral" xsd:string property_value: UBPROP:0000008 "in fish, reptiles and monotremes the connective tissue of the sclera is skeletal" xsd:string property_value: UBPROP:0000010 "continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe." xsd:string property_value: UBPROP:0000011 "Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]." xsd:string property_value: UBPROP:0000011 "Seko et al demonstrate chondrogenic potential and identify this as connective tissue[DOI:10.1371/journal.pone.0003709]." xsd:string [Term] id: UBERON:0001775 name: ciliary body namespace: uberon def: "the thickened portion of the vascular tunic, which lies between the choroid and the iris, composed of ciliary muscle and ciliary processes" [http://en.wikipedia.org/wiki/Ciliary_body, ISBN:0-683-40008-8, MP:0005099] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] synonym: "ciliary bodies" RELATED PLURAL [VHOG:0000102] synonym: "corpus ciliare" RELATED LATIN [http://en.wikipedia.org/wiki/Ciliary_body] synonym: "corpus ciliare" RELATED [http://en.wikipedia.org/wiki/Ciliary_body] synonym: "ocular ciliary body" EXACT [] xref: AAO:0010341 xref: BTO:0000260 xref: CALOHA:TS-0694 xref: Ciliary:body xref: EMAPA:19065 xref: EV:0100346 xref: FMA:58295 xref: GAID:916 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1571 xref: http://linkedlifedata.com/resource/umls/id/C0008779 xref: http://www.snomedbrowser.com/Codes/Details/263340007 xref: MA:0000264 xref: MESH:D002924 xref: NCIT:C12345 xref: UMLS:C0008779 {source="ncithesaurus:Ciliary_Body"} xref: VHOG:0000102 xref: XAO:0000186 relationship: part_of UBERON:0011892 ! anterior uvea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000102", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)"} [Term] id: UBERON:0001776 name: optic choroid namespace: uberon def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [http://en.wikipedia.org/wiki/Choroid] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "chorioid" RELATED [BTO:0001829] synonym: "choroid" EXACT [MA:0000263] synonym: "choroid coat" EXACT [http://en.wikipedia.org/wiki/Choroid] synonym: "choroidea" EXACT [http://en.wikipedia.org/wiki/Choroid] synonym: "choroidea" RELATED LATIN [http://en.wikipedia.org/wiki/Choroid] synonym: "eye choroid" EXACT [VHOG:0001568] synonym: "optic choroid" RELATED [ZFA:0005229] synonym: "posterior uvea" EXACT [http://en.wikipedia.org/wiki/Uvea#Regions] xref: BTO:0001829 xref: CALOHA:TS-2054 xref: EMAPA:19077 xref: EV:0100347 xref: FMA:58298 xref: GAID:913 xref: http://en.wikipedia.org/wiki/Choroid xref: http://linkedlifedata.com/resource/umls/id/C0008520 xref: http://www.snomedbrowser.com/Codes/Details/181172003 xref: MA:0000263 xref: MESH:D002829 xref: NCIT:C12344 xref: TAO:0005229 xref: UMLS:C0008520 {source="ncithesaurus:Choroid"} xref: VHOG:0001568 xref: ZFA:0005229 is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001768 {source="MA"} ! uvea relationship: part_of UBERON:0019207 ! chorioretinal region property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: IAO:0000116 "check choroid vs choroid layer; check ZFA/TAO placement - no homology assertion in VHOG. Note this is entirely in the posterior region of eyeball in ZFA" xsd:string property_value: UBPROP:0000007 "choroidal" xsd:string property_value: UBPROP:0000012 "MP treats posterior uvea and optic choroid as distinct" xsd:string {external_ontology="MP"} [Term] id: UBERON:0001777 name: substantia propria of cornea namespace: uberon def: "the lamellated connective tissue of the cornea between the Bowman and Descemet membranes" [ISBN:0-683-40008-8, MESH:A09.371.060.217.228, MP:0005300] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "corneal stroma" EXACT [MA:0001245] synonym: "stroma of cornea" EXACT [] synonym: "substantia propria" BROAD [] synonym: "substantia propria corneae" EXACT LATIN [FMA:58306, FMA:TA] xref: CALOHA:TS-1138 xref: Corneal:stroma xref: EFO:0002514 xref: EMAPA:17602 xref: FMA:58306 xref: GAID:893 xref: http://linkedlifedata.com/resource/umls/id/C0010040 xref: http://www.snomedbrowser.com/Codes/Details/362511000 xref: MA:0001245 xref: MESH:D003319 xref: NCIT:C12699 xref: TAO:0002189 xref: UMLS:C0010040 {source="ncithesaurus:Corneal_Stroma"} xref: ZFA:0001685 relationship: part_of UBERON:0000964 ! cornea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png xsd:anyURI property_value: UBPROP:0000001 "Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"} property_value: UBPROP:0000002 "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: develops_from tissue (UBERON:0000479)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO"} property_value: UBPROP:0000002 "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: has_developmental_contribution_from tissue (UBERON:0000479)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO"} [Term] id: UBERON:0001778 name: ciliary epithelium namespace: uberon def: "A double layer covering the ciliary body that produces aqueous humor." [http://en.wikipedia.org/wiki/Ciliary_body#Ciliary_epithelium] synonym: "ciliary body epithelium" EXACT [FMA:58464] synonym: "epithelium of ciliary body" EXACT [FMA:58464] synonym: "ocular ciliary epithelium" EXACT [] xref: BTO:0001770 xref: CALOHA:TS-0695 xref: Ciliary_epithelium xref: EMAPA:35239 xref: FMA:58464 xref: http://linkedlifedata.com/resource/umls/id/C0459736 xref: http://www.snomedbrowser.com/Codes/Details/280870004 xref: MA:0001238 xref: NCIT:C32314 xref: UMLS:C0459736 {source="ncithesaurus:Ciliary_Epithelium"} is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body [Term] id: UBERON:0001779 name: iris stroma namespace: uberon def: "The delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://en.wikipedia.org/wiki/Iris_stroma, http://www.drugs.com/dict/stroma-of-iris.html] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "iridial stroma" EXACT [] synonym: "stroma of iris" EXACT [] xref: EMAPA:35451 xref: FMA:58526 xref: http://www.snomedbrowser.com/Codes/Details/280882008 xref: Iris:stroma xref: MA:0002777 xref: ZFA:0005569 relationship: part_of UBERON:0001769 ! iris property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI [Term] id: UBERON:0001781 name: layer of retina namespace: uberon def: "Any of the layers that make up the retina[MP]." [MP:0003727] subset: pheno_slim subset: vertebrate_core synonym: "retina layer" EXACT [] synonym: "retina neuronal layer" EXACT [MP:0006069] synonym: "retinal layer" EXACT [] synonym: "retinal neuronal layer" EXACT [MP:0006069] xref: AAO:0010353 xref: EMAPA:35742 xref: FMA:58617 xref: http://linkedlifedata.com/resource/umls/id/C0459649 xref: http://www.snomedbrowser.com/Codes/Details/280657006 xref: MA:0001319 xref: NCIT:C49328 xref: UMLS:C0459649 {source="ncithesaurus:Retina_Layer"} xref: XAO:0000266 relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000012 "MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001782 name: pigmented layer of retina namespace: uberon def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "epithelium, retinal pigment" RELATED [BTO:0001177] synonym: "outer pigmented layer of retina" EXACT [] synonym: "p. pigmentosa retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium] synonym: "pigment epithelium of retina" EXACT [] synonym: "pigmented epithelium" RELATED [] synonym: "pigmented retina" RELATED [] synonym: "pigmented retina epithelium" EXACT [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "PRE" RELATED [] synonym: "retinal pigment epithelium" EXACT [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium, MP:0005201] synonym: "retinal pigment layer" RELATED [VHOG:0000536] synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144] synonym: "RPE" RELATED [] synonym: "stratum pigmentosa retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Retinal_pigment_epithelium] synonym: "stratum pigmentosum (retina)" EXACT [] synonym: "stratum pigmentosum retinae" EXACT LATIN [FMA:58627, FMA:TA] xref: AAO:0011096 xref: BTO:0001177 xref: CALOHA:TS-0869 xref: EHDAA2:0001465 xref: EHDAA:4765 xref: EMAPA:17172 xref: EMAPA:35738 xref: FMA:58627 xref: http://en.wikipedia.org/wiki/Retinal_pigment_epithelium xref: http://linkedlifedata.com/resource/umls/id/C0035322 xref: http://www.snomedbrowser.com/Codes/Details/280662007 xref: MA:0000279 xref: MA:0003173 xref: NCIT:C33470 xref: TAO:0000144 xref: UMLS:C0035322 {source="ncithesaurus:Retinal_Pigment_Epithelium"} xref: VHOG:0000536 xref: XAO:0003217 xref: ZFA:0000144 is_a: UBERON:0001781 ! layer of retina is_a: UBERON:0015808 ! eye epithelium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI property_value: UBPROP:0000001 "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000144", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The monolayer of pigmented epithelium covering the neural retina.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011096", ontology="AAO", source="ZFA:0000144"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000536", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0001783 name: optic disc namespace: uberon def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [http://en.wikipedia.org/wiki/Optic_disc] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "optic disk" EXACT [MESH:A08.800.800.120.680.660] synonym: "optic disk" RELATED [http://en.wikipedia.org/wiki/Optic_disc] synonym: "optic nerve disc" RELATED [http://en.wikipedia.org/wiki/Optic_disc] synonym: "optic nerve head" RELATED [http://en.wikipedia.org/wiki/Optic_disc] synonym: "optic papilla" RELATED [http://en.wikipedia.org/wiki/Optic_disc] synonym: "physiologic blind spot" RELATED [http://en.wikipedia.org/wiki/Optic_disc] synonym: "physiologic blind spot of mariotte" RELATED [http://en.wikipedia.org/wiki/Optic_disc] xref: CALOHA:TS-2153 xref: EFO:0001974 xref: EHDAA2:0001307 xref: EHDAA:9077 xref: EMAPA:18238 xref: FMA:58634 xref: http://linkedlifedata.com/resource/umls/id/C0029127 xref: http://www.snomedbrowser.com/Codes/Details/362518006 xref: MA:0000278 xref: MESH:D009898 xref: NCIT:C12760 xref: Optic:disc xref: UMLS:C0029127 {source="ncithesaurus:Optic_Disc"} xref: VHOG:0000551 relationship: part_of UBERON:0000966 ! retina property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png xsd:anyURI property_value: UBPROP:0000001 "The small blind spot on the surface of the retina. It is the point where the fibers of the retina leave the eye and become part of the optic nerve. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/optic+disc"} property_value: UBPROP:0000003 "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24"} [Term] id: UBERON:0001786 name: fovea centralis namespace: uberon def: "A depression in the inner retinal surface within the macula lutea, the photoreceptor layer of which is entirely cones and which is specialized for maximum visual acuity" [http://en.wikipedia.org/wiki/Fovea, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "centre of fovea" RELATED [BIRNLEX:2543] synonym: "centre of macula" EXACT [BIRNLEX:2543] synonym: "fovea" BROAD [] synonym: "fovea centralis in macula" EXACT [http://en.wikipedia.org/wiki/Fovea_centralis_in_macula] xref: BIRNLEX:2543 xref: CALOHA:TS-2055 xref: EMAPA:37589 {source="MA:th"} xref: EV:0100350 xref: FMA:58658 xref: GAID:910 xref: http://en.wikipedia.org/wiki/Fovea_centralis_in_macula xref: http://linkedlifedata.com/resource/umls/id/C0016622 xref: http://linkedlifedata.com/resource/umls/id/C0450290 xref: http://www.snomedbrowser.com/Codes/Details/264479005 xref: MA:0001307 xref: MESH:D005584 xref: NCIT:C26463 xref: UMLS:C0016622 {source="BIRNLEX:2543"} xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"} xref: UMLS:C0450290 {source="BIRNLEX:2543"} xref: VHOG:0001572 relationship: part_of UBERON:0000053 ! macula lutea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: UBPROP:0000001 "A small pit in the center of the macula lutea, the area of clearest vision, where the retinal layers are spread aside, and light falls directly on the cones. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/fovea"} property_value: UBPROP:0000003 "Definition of fovea centralis should be considered here as 'an area centralis at the visual axis' (reference 1). There is an uncertaincy of the relation, because: 1.-The fovea first appeared in evolution in the temporal retina of fishes. Then, in birds, the nasal fovea and bifoveal system with nasal and temporal foveas developed. The fovea disappeared in primitive mammals, and reappeared in primates. A residue of the fovea is conserved in the visual streak, and the disappearance and reappearance of the fovea, in primitive mammals and primates respectively, correlates with degeneration and restoration of cone pigment genes in photoreceptors (reference 2). 2.-Many retinal features (foveas, trichromacy, midget pathways and associated cell types) appear specific to primates. This has led to investigations in parallel with other mammalian models such as cat or rabbit. Correlation of the results often proves to be difficult, since an evolutionary scenario with transitions between the mammalian models is largely lacking (reference 3).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1017/S095252380623342X Ahnelt PK, Schubert C, Kübber-Heiss A, Schiviz A, Anger E, Independent variation of retinal S and M cone photoreceptor topographies: A survey of four families of mammals. Visual neuroscience (2006), http://www.ncbi.nlm.nih.gov/pubmed/11193946 Azuma N, Molecular cell biology on morphogenesis of the fovea and evolution of the central vision. Nihon Ganka Gakkai Zasshi (2000), DOI:10.1016/S1350-9462(00)00012-4 Ahnelt PK, Kolb H, The mammalian photoreceptor mosaic-adaptive design. Progress in Retinal and Eye Research (2000)"} property_value: UBPROP:0000007 "foveal" xsd:string property_value: UBPROP:0000008 "The fovea is also a pit in the surface of the retinas of many types of fish, reptiles, and birds. Among mammals, it is found only in simian primates. The retinal fovea takes slightly different forms in different types of animals. For example, in primates, cone photoreceptors line the base of the foveal pit, the cells that elsewhere in the retina form more superficial layers having been displaced away from the foveal region during late fetal and early postnatal life. Other foveae may show only a reduced thickness in the inner cell layers, rather than an almost complete absence" xsd:string property_value: UBPROP:0000009 "high acuity vision" xsd:string [Term] id: UBERON:0001787 name: photoreceptor layer of retina namespace: uberon def: "The layer within the retina where the photoreceptor cell receptor segments reside." [http://en.wikipedia.org/wiki/Layer_of_rods_and_cones, ZFA:0000143] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "layer of rods and cones" RELATED [] synonym: "retina photoreceptor layer" EXACT [] synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143] synonym: "retinal photoreceptor layers" RELATED PLURAL [ZFA:0000143] synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] synonym: "stratum segmentorum externorum et internorum retinae" EXACT LATIN [FMA:58680, FMA:TA] xref: EMAPA:35686 xref: FMA:58680 xref: http://en.wikipedia.org/wiki/Layer_of_rods_and_cones xref: http://linkedlifedata.com/resource/umls/id/C0229206 xref: MA:0001308 xref: NCIT:C32954 xref: TAO:0000143 xref: UMLS:C0229206 {source="ncithesaurus:Layer_of_the_Rods_and_Cones"} xref: VHOG:0001165 xref: XAO:0003215 xref: ZFA:0000143 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001165", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} property_value: UBPROP:0000012 "we follow MA and ZFA in subdividing this into inner and outer segments" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001788 name: outer limiting layer of retina namespace: uberon def: "The row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109, MP:0010236] subset: pheno_slim subset: vertebrate_core synonym: "blood retina barrier" RELATED [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] synonym: "BRB" RELATED ABBREVIATION [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109] synonym: "external limiting lamina of retina" EXACT [] synonym: "external limiting membrane" EXACT [ZFA:0001331] synonym: "external limiting membrane of retina" EXACT [] synonym: "outer limiting membrane" EXACT [XAO:0003224] synonym: "outer limiting membrane of retina" EXACT [] synonym: "outer limiting membranes" RELATED PLURAL [ZFA:0001331] synonym: "retina external limiting lamina" EXACT [] synonym: "retina outer limiting membrane" EXACT [MP:0010236] synonym: "stratum limitans externum (retina)" EXACT [] synonym: "stratum limitans externum retinae" EXACT LATIN [FMA:58683, FMA:TA] xref: EMAPA:36518 xref: FMA:58683 xref: http://en.wikipedia.org/wiki/External_limiting_membrane xref: http://linkedlifedata.com/resource/umls/id/C1518685 xref: http://www.snomedbrowser.com/Codes/Details/280676008 xref: MA:0001309 xref: NCIT:C33235 xref: TAO:0001331 xref: UMLS:C1518685 {source="ncithesaurus:Outer_Limiting_Membrane"} xref: XAO:0003224 xref: ZFA:0001331 is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina [Term] id: UBERON:0001789 name: outer nuclear layer of retina namespace: uberon def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] subset: pheno_slim subset: vertebrate_core synonym: "external nuclear layer" RELATED [BTO:0005600] synonym: "layer of outer granules" RELATED [BTO:0005600] synonym: "neural retina outer nuclear layer" EXACT [EMAPA:19157] synonym: "ONL" NARROW [] synonym: "outer nuclear layer" BROAD [] synonym: "retina outer nuclear layer" EXACT [] synonym: "retina, outer nuclear layer" RELATED [BAMS:Ronl] synonym: "retinal outer nuclear layer" EXACT [] synonym: "retinal outer nuclear layers" RELATED PLURAL [ZFA:0001464] synonym: "stratum nucleare externum (retina)" EXACT [] synonym: "stratum nucleare externum retinae" EXACT LATIN [FMA:58684, FMA:TA] xref: BAMS:Ronl xref: BTO:0005600 xref: EMAPA:19157 xref: FMA:58684 xref: http://en.wikipedia.org/wiki/Outer_nuclear_layer xref: http://linkedlifedata.com/resource/umls/id/C0229210 xref: http://www.snomedbrowser.com/Codes/Details/280678009 xref: MA:0001315 xref: NCIT:C33236 xref: TAO:0001464 xref: UMLS:C0229210 {source="ncithesaurus:Outer_Nuclear_Layer_of_Retina"} xref: VHOG:0001170 xref: XAO:0003219 xref: ZFA:0001464 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001170", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0001790 name: outer plexiform layer of retina namespace: uberon def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] subset: pheno_slim subset: vertebrate_core synonym: "external plexiform layer" BROAD [BTO:0003174] synonym: "OPL" NARROW ABBREVIATION [] synonym: "outer plexiform layer" EXACT [BTO:0003174] synonym: "retina outer plexiform layer" EXACT [] synonym: "retina, outer plexiform layer" RELATED [BAMS:Ropl] synonym: "retinal outer plexiform layer" EXACT [] synonym: "retinal outer plexiform layers" RELATED PLURAL [ZFA:0001330] synonym: "stratum plexiforme externum" EXACT [] synonym: "stratum plexiforme externum retinae" EXACT LATIN [FMA:58685, FMA:TA] xref: BAMS:Ropl xref: BTO:0003174 xref: EMAPA:35744 xref: FMA:58685 xref: http://en.wikipedia.org/wiki/Outer_plexiform_layer xref: http://linkedlifedata.com/resource/umls/id/C0229217 xref: http://www.snomedbrowser.com/Codes/Details/280684007 xref: MA:0001316 xref: NCIT:C33237 xref: TAO:0001330 xref: UMLS:C0229217 {source="ncithesaurus:Outer_Plexiform_Layer"} xref: VHOG:0001171 xref: XAO:0003218 xref: ZFA:0001330 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the photoreceptor cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001330", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001171", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0001791 name: inner nuclear layer of retina namespace: uberon def: "Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia)." [NLX:93816] comment: AO notes NLXANAT:1005031 appears to be retired subset: pheno_slim subset: vertebrate_core synonym: "INL" NARROW [] synonym: "inner nuclear layer" EXACT [] synonym: "intermediate cell layer" EXACT [ZFA:0000119] synonym: "layer of inner granules" RELATED [NLX:93816] synonym: "neural retina inner nuclear layer" EXACT [EMAPA:19155] synonym: "retina inner nuclear layer" EXACT [] synonym: "retina, inner nuclear layer" RELATED [BAMS:Rinl] synonym: "retinal inner nuclear layer" EXACT [] synonym: "stratum nucleare internum" EXACT [] synonym: "stratum nucleare internum retinae" EXACT LATIN [FMA:58686, FMA:TA] xref: BAMS:Rinl xref: BTO:0003176 xref: EMAPA:19155 xref: FMA:58686 xref: http://en.wikipedia.org/wiki/Inner_nuclear_layer xref: http://linkedlifedata.com/resource/umls/id/C0229211 xref: http://www.snomedbrowser.com/Codes/Details/362520009 xref: MA:0001311 xref: NCIT:C32808 xref: NLX:93816 xref: NLXANAT:1005031 xref: TAO:0000119 xref: UMLS:C0229211 {source="ncithesaurus:Inner_Nuclear_Layer"} xref: VHOG:0001167 xref: XAO:0003221 xref: ZFA:0000119 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: UBPROP:0000001 "The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells[BTO:0003176]." xsd:string {source="BTO:0003176"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001167", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0001792 name: ganglionic layer of retina namespace: uberon def: "Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer" [NLX:36500] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ganglion cell layer" BROAD [FMA:58687, ZFA:0000024] synonym: "ganglionic cell layer of retina" EXACT [FMA:58687] synonym: "GCL layer" EXACT [] synonym: "retina ganglion cell layer" EXACT [] synonym: "retina ganglion layer" EXACT [] synonym: "retina, ganglion cell layer" RELATED [BAMS:Rgcl] synonym: "retinal ganglion cell layer" EXACT [] synonym: "retinal ganglion layer" EXACT [MP:0008510] synonym: "RGC layer" EXACT [] synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687] synonym: "stratum ganglionicum retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Ganglion_cell_layer] xref: BAMS:Rgcl xref: BTO:0003398 xref: CALOHA:TS-0867 xref: EMAPA:35739 xref: FMA:58687 xref: http://en.wikipedia.org/wiki/Ganglion_cell_layer xref: http://www.snomedbrowser.com/Codes/Details/280670002 xref: MA:0001310 xref: NCIT:C32652 xref: NLX:36500 xref: NLXANAT:1005030 xref: TAO:0000024 xref: VHOG:0001166 xref: XAO:0003223 xref: ZFA:0000024 is_a: UBERON:0001781 {source="FMA"} ! layer of retina relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI property_value: UBPROP:0000001 "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain[Wikipedia:Ganglion_cell_layer]." xsd:string {source="http://en.wikipedia.org/wiki/Ganglion_cell_layer"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001166", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} property_value: UBPROP:0000012 "NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030]" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0001793 name: nerve fiber layer of retina namespace: uberon alt_id: UBERON:0005888 def: "layer of the retina formed by expansion of the fibers of the optic nerve" [ISBN:0-914294-08-3, MGI:smb] subset: pheno_slim subset: vertebrate_core synonym: "layer of nerve fibers of retina" EXACT [] synonym: "layer of nerve fibres of retina" EXACT [] synonym: "nerve fiber layer" BROAD [ZFA:0001619] synonym: "neural retina nerve fibre layer" RELATED [EMAPA:18591] synonym: "optic fiber layer" EXACT [DMBA:15652] synonym: "optic fiber layer" RELATED [VHOG:0001169] synonym: "optic fiber layers" RELATED PLURAL [TAO:0002212] synonym: "retina nerve fiber layer" EXACT [] synonym: "stratum neurofibrarum (retina)" EXACT [] synonym: "stratum neurofibrarum retinae" EXACT LATIN [FMA:58688, FMA:TA] synonym: "stratum neurofibrum retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Nerve_fiber_layer] synonym: "stratum opticum of retina" EXACT [] xref: DMBA:15652 xref: EMAPA:18591 xref: FMA:58688 xref: http://en.wikipedia.org/wiki/Nervous_system_fiber_layer xref: http://www.snomedbrowser.com/Codes/Details/280671003 xref: MA:0001314 xref: TAO:0002212 xref: VHOG:0001169 xref: XAO:0003220 xref: ZFA:0001619 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001169", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0001794 name: inner limiting layer of retina namespace: uberon def: "The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235] subset: pheno_slim subset: vertebrate_core synonym: "ILM" BROAD ABBREVIATION [ZFA:0001029] synonym: "inner limiting membrane" EXACT [XAO:0003222] synonym: "inner limiting membrane of retina" EXACT [] synonym: "inner limiting membranes" RELATED PLURAL [ZFA:0001029] synonym: "internal limiting lamina of retina" EXACT [] synonym: "internal limiting membrane of retina" EXACT [] synonym: "retina inner limiting membrane" EXACT [MP:0010235] synonym: "retina internal limiting lamina" EXACT [] synonym: "stratum limitans internum retinae" EXACT LATIN [FMA:58689, FMA:TA] xref: EMAPA:36519 xref: FMA:58689 xref: http://en.wikipedia.org/wiki/Inner_limiting_membrane xref: http://linkedlifedata.com/resource/umls/id/C1512783 xref: http://www.snomedbrowser.com/Codes/Details/280677004 xref: MA:0001313 xref: NCIT:C32807 xref: TAO:0001029 xref: UMLS:C1512783 {source="ncithesaurus:Inner_Limiting_Membrane"} xref: XAO:0003222 xref: ZFA:0001029 is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina property_value: IAO:0000116 "TODO - check frog/fish" xsd:string property_value: UBPROP:0000001 "Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf[ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3]." xsd:string {source="ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3"} [Term] id: UBERON:0001795 name: inner plexiform layer of retina namespace: uberon def: "Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)" [NLX:20558] subset: pheno_slim subset: vertebrate_core synonym: "inner plexiform layer" RELATED [BTO:0003175] synonym: "internal plexiform layer of retina" RELATED [NLXANAT:1005032] synonym: "IPL" NARROW ABBREVIATION [] synonym: "retina inner plexiform layer" EXACT [] synonym: "retina, inner plexiform layer" RELATED [BAMS:Ripl] synonym: "retinal inner plexiform layer" EXACT [] synonym: "retinal internal plexiform layer" RELATED [NLXANAT:1005032] synonym: "stratum plexifome internum" RELATED [BTO:0003175] synonym: "stratum plexiforme internum" EXACT [FMA:58704] synonym: "stratum plexiforme internum retinae" RELATED LATIN [http://en.wikipedia.org/wiki/Inner_plexiform_layer] xref: BAMS:Ripl xref: BTO:0003175 xref: EMAPA:35741 xref: FMA:58704 xref: http://en.wikipedia.org/wiki/Inner_plexiform_layer xref: http://linkedlifedata.com/resource/umls/id/C0229221 xref: http://www.snomedbrowser.com/Codes/Details/280682006 xref: MA:0001312 xref: NCIT:C32809 xref: NLX:20558 xref: NLXANAT:1005032 xref: TAO:0001329 xref: UMLS:C0229221 {source="ncithesaurus:Inner_Plexiform_Layer"} xref: VHOG:0001168 xref: XAO:0003225 xref: ZFA:0001329 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI property_value: UBPROP:0000001 "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO][GO:0010842]." xsd:string {source="GO:0010842"} property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001329", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001168", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} property_value: UBPROP:0000012 "http://neurolex.org/wiki/Nlx_anat_1005032 appears to be retired" xsd:string [Term] id: UBERON:0001796 name: aqueous humor of eyeball namespace: uberon def: "A thick watery refractive medium that fills the space between the lens and the cornea[WP]." [http://en.wikipedia.org/wiki/Aqueous_humor] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "aqueous humor" EXACT [] synonym: "aqueous humour" EXACT [EHDAA2:0000139] synonym: "humor aquosus" EXACT LATIN [FMA:58819, FMA:TA] xref: Aqueous:humor xref: EHDAA2:0000139 xref: EHDAA:10196 xref: EMAPA:18232 xref: ENVO:02000024 xref: FMA:58819 xref: GAID:890 xref: http://linkedlifedata.com/resource/umls/id/C0003662 xref: http://www.snomedbrowser.com/Codes/Details/280587006 xref: MA:0001236 xref: MESH:D001082 xref: NCIT:C13190 xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA xref: UMLS:C0003662 {source="ncithesaurus:Aqueous_Humor"} xref: VHOG:0000548 xref: ZFA:0005564 is_a: UBERON:0006312 ! ocular refractive media relationship: part_of UBERON:0001766 {notes="FMA def states A and P", notes="located_in in EHDAA2", source="VHOG"} ! anterior chamber of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: UBPROP:0000001 "The fluid produced by the ciliary process in the eye and occupying the anterior and posterior chambers. It provides nourishment for the lens and cornea and maintains the ocular pressure, and hence the optical integrity of the eyeball. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000548", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aqueous+humour"} property_value: UBPROP:0000003 "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000548", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24"} property_value: UBPROP:0000012 "FMA says A+P chambers, and MA states A chamber. ZFA states A chamber and tha it is produced primarily by dorsal ciliary epithelial cells.To be investigated across taxa." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001797 name: vitreous humor namespace: uberon def: "A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina" [MP:0002699] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "humor vitreous" EXACT [] synonym: "humor vitreus" EXACT LATIN [FMA:58822, FMA:TA] synonym: "humoral fluid" RELATED [BTO:0001451] synonym: "ocular fluid" RELATED [BTO:0001451] synonym: "portion of vitreous humor" BROAD [FMA:67388] synonym: "vitreous" EXACT [ZFA:0005561] synonym: "vitreous fluid" RELATED [BTO:0001451] synonym: "vitreous humour" RELATED [] synonym: "whole portion of vitreous humor" EXACT [FMA:58822] xref: BTO:0001451 xref: CALOHA:TS-0308 xref: EMAPA:17837 xref: ENVO:02000032 xref: EV:0100344 xref: FMA:58822 xref: http://linkedlifedata.com/resource/umls/id/C0229096 xref: MA:0001286 xref: NCIT:C13323 xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA xref: UMLS:C0229096 {source="ncithesaurus:Vitreous_Humor"} xref: VHOG:0000795 xref: Vitreous:humour xref: ZFA:0005561 is_a: UBERON:0006312 ! ocular refractive media relationship: part_of UBERON:0001798 ! vitreous body property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI [Term] id: UBERON:0001798 name: vitreous body namespace: uberon def: "Gelatinous mucoid tissue that is composed of vitreous humor and fills the cavity behind the crystalline lens of the eye and in front of the retina[MP,modified]" [MP:0002699] subset: pheno_slim subset: uberon_slim xref: CALOHA:TS-0308 xref: FMA:58827 xref: GAID:919 xref: http://linkedlifedata.com/resource/umls/id/C0042905 xref: http://www.snomedbrowser.com/Codes/Details/181170006 xref: MA:0002462 xref: MESH:A09.371.943 xref: NCIT:C33884 xref: UMLS:C0042905 {source="ncithesaurus:Vitreous_Body"} relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: IAO:0000116 "distinciton between body and humor requires more work. These may be merged in future. Note that FMA includes the hyaloid canal as part of the vitreous body" xsd:string [Term] id: UBERON:0001799 name: vitreous chamber of eyeball namespace: uberon def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087] subset: uberon_slim synonym: "camera postrema" EXACT [FMA:58848] synonym: "camera postrema bulbi oculi" EXACT LATIN [FMA:58848, FMA:TA] synonym: "camera postrema bulbi oculi" EXACT [FMA:TA] synonym: "camera vitrea" EXACT [FMA:58848] synonym: "camera vitrea bulbi" EXACT [FMA:58848] synonym: "postremal chamber" EXACT [FMA:58848] synonym: "postremal chamber of eyeball" EXACT [FMA:58848] synonym: "vitreous chamber" EXACT [FMA:58848] xref: BTO:0002087 xref: EMAPA:37805 {source="MA:th"} xref: FMA:58848 xref: http://linkedlifedata.com/resource/umls/id/C0229095 xref: MA:0002461 xref: NCIT:C33885 xref: UMLS:C0229095 {source="ncithesaurus:Vitreous_Chamber"} xref: Vitreous:chamber is_a: UBERON:0006311 ! chamber of eyeball relationship: part_of UBERON:0001802 ! posterior segment of eyeball [Term] id: UBERON:0001801 name: anterior segment of eyeball namespace: uberon def: "any of the parts of the eye that lie in front of, or ventral to, the lens (inclusive)" [ISBN:0-683-40008-8, MESH:A09.371.060, MP:0005193] subset: pheno_slim subset: vertebrate_core synonym: "anterior eye segment" EXACT [] synonym: "anterior segment eye" EXACT [ZFA:0005566] synonym: "anterior segment of eye" EXACT [] synonym: "anterior segment of the eye" EXACT [] synonym: "eye anterior segment" EXACT [] synonym: "segmentum anterius (bulbus oculi)" EXACT [] synonym: "segmentum anterius bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_segment_of_eyeball] xref: EMAPA:36594 xref: FMA:58865 xref: http://en.wikipedia.org/wiki/Anterior_segment_of_eyeball xref: http://linkedlifedata.com/resource/umls/id/C0003153 xref: http://www.snomedbrowser.com/Codes/Details/280658001 xref: MA:0002484 xref: MESH:D000869 xref: NCIT:C12668 xref: UMLS:C0003153 {source="ncithesaurus:Anterior_Eye_Segment"} xref: ZFA:0005566 relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png xsd:anyURI [Term] id: UBERON:0001802 name: posterior segment of eyeball namespace: uberon def: "any of the parts of the eye that lie in back of, or dorsal to, the lens (but not inclusive)" [ISBN:0-683-40008-8, MP:0005195] subset: pheno_slim subset: vertebrate_core synonym: "eye posterior segment" EXACT [] synonym: "posterior eye segment" EXACT [] synonym: "posterior segment eye" EXACT [ZFA:0005567] synonym: "posterior segment of eye" EXACT [] synonym: "posterior segment of the eye" EXACT [] synonym: "segmentum posterius (bulbus oculi)" EXACT [] synonym: "segmentum posterius bulbi oculi" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_segment_of_eyeball] xref: EMAPA:36595 xref: FMA:58868 xref: http://en.wikipedia.org/wiki/Posterior_segment_of_eyeball xref: http://linkedlifedata.com/resource/umls/id/C0278450 xref: http://www.snomedbrowser.com/Codes/Details/280659009 xref: MA:0002485 xref: NCIT:C12906 xref: UMLS:C0278450 {source="ncithesaurus:Posterior_Eye_Segment"} xref: ZFA:0005567 relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI [Term] id: UBERON:0001803 name: epithelium of lens namespace: uberon def: "A layer of epithelial cells that is part of the eye." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: vertebrate_core synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic] synonym: "epithelial tissue of lens" EXACT [OBOL:automatic] synonym: "epithelium lentis" EXACT LATIN [FMA:58871, FMA:TA] synonym: "epithelium of eye lens" EXACT [OBOL:automatic] synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic] synonym: "eye lens epithelium" EXACT [OBOL:automatic] synonym: "lens epithelial tissue" EXACT [OBOL:automatic] synonym: "lens epithelium" EXACT [] xref: BTO:0001873 xref: CALOHA:TS-0543 xref: EMAPA:32871 xref: FMA:58871 xref: http://www.snomedbrowser.com/Codes/Details/362523006 xref: Lens_Epithelium xref: MA:0001301 xref: TAO:0001326 xref: XAO:0004094 xref: ZFA:0001326 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0000965 ! lens of camera-type eye property_value: IAO:0000232 "this class is the superclass of the anterior epithelium and equatorial epithlium, although the term 'lens epithelium' may refer specifically to the former" xsd:string [Term] id: UBERON:0001804 name: capsule of lens namespace: uberon def: "the elastic, clear, membrane-like structure, that is outer most layer of the lens" [http://www.ncbi.nlm.nih.gov/pubmed/15483628, MGI:smb, MP:0003236] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "capsula lentis" EXACT LATIN [] synonym: "lens capsule" EXACT [] xref: EHDAA2:0000977 xref: EMAPA:18237 xref: FMA:58881 xref: http://linkedlifedata.com/resource/umls/id/C0229232 xref: http://www.snomedbrowser.com/Codes/Details/244500004 xref: Lens_capsule xref: MA:0001300 xref: NCIT:C32975 xref: UMLS:C0229232 {source="ncithesaurus:Lens_Capsule"} xref: VHOG:0000550 xref: ZFA:0005574 relationship: part_of UBERON:0000965 ! lens of camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI property_value: UBPROP:0000001 "The transparent membrane which surrounds the lens of the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000550", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000550", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24"} property_value: UBPROP:0000010 "synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs). [Wikipedia:Capsule_of_lens" xsd:string property_value: UBPROP:0000012 "FMA classifies this is a capsule and hence an organ part. In contrast we classify this as acellular" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0001811 name: conjunctiva namespace: uberon def: "the mucous membrane that lines the inner surface of the eyelids and the front of the eyeball" [MESH:A09.371.060.200, MGI:csmith, MP:0001310] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "conjunctivae" EXACT PLURAL [XAO:0000182] synonym: "conjunctivas" EXACT PLURAL [XAO:0000182] synonym: "tunica conjunctiva" EXACT LATIN [FMA:TA] synonym: "wall of conjunctival sac" EXACT [FMA:59011] xref: AAO:0010343 xref: BTO:0003415 xref: CALOHA:TS-2232 xref: EFO:0000374 xref: EMAPA:18233 xref: EV:0100340 xref: FMA:59011 xref: GAID:898 xref: http://en.wikipedia.org/wiki/Conjunctiva xref: http://linkedlifedata.com/resource/umls/id/C0009758 xref: http://www.snomedbrowser.com/Codes/Details/181161008 xref: MA:0000265 xref: MESH:A09.371.192 xref: NCIT:C12341 xref: UMLS:C0009758 {source="ncithesaurus:Conjunctiva"} xref: XAO:0000182 relationship: part_of UBERON:0005908 {source="cjm"} ! conjunctival sac relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI property_value: UBPROP:0000007 "conjunctival" xsd:string [Term] id: UBERON:0001812 name: palpebral conjunctiva namespace: uberon def: "A thin transparent mucous membrane that covers the posterior surface of the eyelids and is continuous with the bulbar conjunctiva at the conjunctival fornicies." [MP:0013394] comment: lines the eyeballs subset: pheno_slim synonym: "conjunctival layer of eyelids" EXACT [MP:0013394] synonym: "eyelid conjunctiva" RELATED [] synonym: "tarsal conjunctiva" EXACT [http://en.wikipedia.org/wiki/Conjunctiva] synonym: "tunica conjunctiva palpebrum" EXACT [] xref: FMA:59025 xref: http://linkedlifedata.com/resource/umls/id/C0229274 xref: http://www.snomedbrowser.com/Codes/Details/280666005 xref: MA:0001265 xref: NCIT:C12901 xref: UMLS:C0229274 {source="ncithesaurus:Palpebral_Conjunctiva"} is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva relationship: part_of UBERON:0001711 {source="FMA", source="MA"} ! eyelid [Term] id: UBERON:0001817 name: lacrimal gland namespace: uberon def: "The lacrimal glands are paired almond-shaped glands, located in or near the orbital region, that secrete the aqueous layer of the tear film.[WP]." [http://en.wikipedia.org/wiki/Lacrimal_gland, http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "glandula lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_gland] synonym: "glandula praeorbitalis" RELATED SENSU [http://en.wikipedia.org/wiki/Preorbital_gland, NCBITaxon:91561] synonym: "lacrimal-preorbital gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "preorbital gland" RELATED SENSU [http://en.wikipedia.org/wiki/Preorbital_gland, NCBITaxon:91561] synonym: "tear gland" RELATED [BTO:0000044] xref: BTO:0000044 xref: CALOHA:TS-0512 xref: EFO:0001389 xref: EMAPA:35463 xref: EV:0100339 xref: FMA:59101 xref: http://linkedlifedata.com/resource/umls/id/C0022907 xref: http://www.snomedbrowser.com/Codes/Details/181147003 xref: Lacrimal:gland xref: MA:0001296 xref: NCIT:C12346 xref: Preorbital:gland xref: UMLS:C0022907 {source="ncithesaurus:Lacrimal_Gland"} xref: VHOG:0001476 is_a: UBERON:0004859 ! eye gland relationship: part_of UBERON:0001750 ! lacrimal apparatus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI property_value: UBPROP:0000001 "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands." xsd:string {source="FMA:59101"} property_value: UBPROP:0000001 "The preorbital gland is a paired exocrine gland found in many species of hoofed animals, which is homologous to the lacrimal gland found in humans. These glands are trenchlike slits of dark blue to black, nearly bare skin extending from the medial canthus of each eye. They are lined by a combination of sebaceous and sudoriferous glands, and they produce secretions which contain pheromones and other semiochemical compounds. Ungulates frequently deposit these secretions on twigs and grass as a means of communication with other animals. The preorbital gland serves different roles in different species. Pheromone-containing secretions from the preorbital gland may serve to establish an animal's dominance (especially in preparation for breeding), mark its territory, or simply to produce a pleasurable sensation to the animal. Because of its critical role in scent marking, the preorbital gland is usually considered as a type of scent gland. A further function of these glands may be to produce antimicrobial compounds against skin pathogens. Antimicrobial compounds found in these glands may be biosynthesized by the animal itself, or by microorganisms that live in these glands[Wikipedia:Preorbital_gland]." xsd:string {source="Preorbital:gland"} property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI property_value: UBPROP:0000008 "In humans, they are situated in the upper, outer portion of each orbit" xsd:string property_value: UBPROP:0000008 "Innervation is highly complex and species-specific" xsd:string [Term] id: UBERON:0001818 name: tarsal gland namespace: uberon def: "A modified lobulated sebaceous gland at the rim of an eyelid, responsible for the supply of meibum." [http://en.wikipedia.org/wiki/Meibomian_gland, http://www.ncbi.nlm.nih.gov/pubmed/20664693, ISBN:0123813611] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "gland of Meibom" EXACT [] synonym: "glandula tarsales" EXACT [] synonym: "Meibomian gland" EXACT [MA:0001249] synonym: "palpebral gland" RELATED [MA:0001249] synonym: "tarsoconjunctival gland" RELATED [BTO:0004165] xref: BTO:0004165 xref: FMA:59104 xref: GAID:899 xref: http://linkedlifedata.com/resource/umls/id/C0025181 xref: http://www.snomedbrowser.com/Codes/Details/280585003 xref: MA:0001249 xref: Meibomian:gland xref: MESH:D008537 xref: NCIT:C33075 xref: UMLS:C0025181 {source="ncithesaurus:Meibomian_Gland"} is_a: UBERON:0013231 ! sebaceous gland of eyelid relationship: part_of UBERON:0004772 ! eyelid tarsus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png xsd:anyURI property_value: UBPROP:0000011 "in mice, meibomian gland development is initiated around E18.5 with the formation of an epithelial placode and mesenchymal condensation, similar to that observed in hair follicle development; invagination of the epithelium into the developing mesenchyme then continues from birth to about P3 with initial branching of the epithelial cord detected at P5; by P8 the developing meibomian gland shows extensive ductal branching and the formation of distinct acini with mature meibomian glands present by P15 or eyelid opening[PMID:20664693]" xsd:string [Term] id: UBERON:0001819 name: palpebral fissure namespace: uberon def: "Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]." [http://en.wikipedia.org/wiki/Palpebral_fissure] subset: pheno_slim subset: uberon_slim synonym: "rima palpebrarum" RELATED LATIN [http://en.wikipedia.org/wiki/Palpebral_fissure] xref: FMA:59110 xref: http://www.snomedbrowser.com/Codes/Details/280576003 xref: MA:0001266 xref: Palpebral:fissure relationship: part_of UBERON:0000019 ! camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png xsd:anyURI [Term] id: UBERON:0001822 name: orbital septum namespace: uberon def: "A membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [http://en.wikipedia.org/wiki/Orbital_septum] subset: organ_slim subset: uberon_slim synonym: "septum orbitale" RELATED LATIN [http://en.wikipedia.org/wiki/Orbital_septum] xref: EMAPA:37609 {source="MA:th"} xref: FMA:59328 xref: http://www.snomedbrowser.com/Codes/Details/368859002 xref: MA:0001259 xref: Orbital:septum relationship: part_of UBERON:0004772 ! eyelid tarsus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/18/Gray891.png xsd:anyURI [Term] id: UBERON:0001823 name: nasal cartilage namespace: uberon def: "One of the cartilage structures in the nose that provide form and support[WP]." [http://en.wikipedia.org/wiki/Nasal_cartilage] subset: pheno_slim subset: uberon_slim synonym: "cartilage of nose" EXACT [] xref: CALOHA:TS-0655 xref: EMAPA:37681 {source="MA:th"} xref: FMA:59502 xref: http://linkedlifedata.com/resource/umls/id/C0225415 xref: http://www.snomedbrowser.com/Codes/Details/278941001 xref: MA:0001883 xref: Nasal:cartilage xref: NCIT:C49593 xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"} relationship: part_of UBERON:0000004 ! nose property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI [Term] id: UBERON:0001826 name: nasal cavity mucosa namespace: uberon def: "The mucous membrane that lines the nasal cavity[MP]." [MP:0002238] subset: pheno_slim synonym: "mucosa of nose" EXACT [FMA:59684] synonym: "mucous membrane of nose" EXACT [FMA:59684] synonym: "nasal mucosa" RELATED [] synonym: "tunica mucosa nasalis" EXACT [] synonym: "tunica mucosa nasi" EXACT LATIN [FMA:59684, FMA:TA] xref: BTO:0000912 xref: CALOHA:TS-0657 xref: EMAPA:36026 xref: FMA:59684 xref: GAID:302 xref: http://en.wikipedia.org/wiki/Mucous_membrane_of_nose xref: http://www.snomedbrowser.com/Codes/Details/310211009 relationship: part_of UBERON:0015788 ! olfactory apparatus chamber property_value: IAO:0000116 "TODO - check lining vs part of. split olfactory and nasal mucosa?" xsd:string [Term] id: UBERON:0001839 name: bony labyrinth namespace: uberon def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [http://en.wikipedia.org/wiki/Bony_labyrinth] comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved. subset: pheno_slim subset: uberon_slim synonym: "labyrinthus osseus" RELATED LATIN [http://en.wikipedia.org/wiki/Bony_labyrinth] synonym: "osseous labyrinth" EXACT [] synonym: "osseus labyrinth" RELATED [] xref: AAO:0011078 xref: Bony:labyrinth xref: BTO:0004685 xref: CALOHA:TS-2080 xref: EMAPA:36580 xref: EV:0100362 xref: FMA:60179 xref: http://linkedlifedata.com/resource/umls/id/C0458699 xref: http://www.snomedbrowser.com/Codes/Details/279727008 xref: MA:0000238 xref: NCIT:C33227 xref: UMLS:C0458699 {source="ncithesaurus:Osseous_Labyrinth"} xref: VHOG:0001219 xref: XAO:0000193 relationship: part_of UBERON:0001846 {source="FMA"} ! internal ear relationship: part_of UBERON:0004681 ! vestibular system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/22/Gray920.png xsd:anyURI [Term] id: UBERON:0001840 name: semicircular canal namespace: uberon def: "One of three half-circular, interconnected tubes located inside each ear[WP]." [http://en.wikipedia.org/wiki/Semicircular_canal] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "canalis semicircularis" RELATED LATIN [http://en.wikipedia.org/wiki/Semicircular_canal] synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA] synonym: "scc" RELATED [TAO:0000431] synonym: "semicircular canals" EXACT PLURAL [TAO:0000431] synonym: "semicircular ducts" RELATED PLURAL [XAO:0000198] xref: AAO:0011098 xref: BTO:0003383 xref: CALOHA:TS-2164 xref: EMAPA:32832 xref: EV:0100365 xref: FMA:60186 xref: GAID:776 xref: http://linkedlifedata.com/resource/umls/id/C0036622 xref: http://www.snomedbrowser.com/Codes/Details/279757004 xref: MA:0000249 xref: MESH:D012665 xref: NCIT:C33527 xref: Semicircular:canal xref: TAO:0000431 xref: UMLS:C0036622 {source="ncithesaurus:Semicircular_Canal"} xref: VHOG:0001144 xref: XAO:0000198 xref: ZFA:0000431 relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png xsd:anyURI property_value: UBPROP:0000001 "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000431", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. These ducts are sometimes called canals, but technically the term semicircular canal applies to the spaces in the osseus labyrinth in which the semicircular ducts lie.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001144", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.414"} property_value: UBPROP:0000009 "detects angular acceleration" xsd:string property_value: UBPROP:0000012 "MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal" xsd:string {external_ontology="MA"} [Term] id: UBERON:0001841 name: anterior semicircular canal namespace: uberon subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior semicircular canals" RELATED [] synonym: "anterior semicircular duct" RELATED [] synonym: "canalis semircularis posterior" RELATED [AAO:0000058] synonym: "rostral vertical semicircular canal" RELATED [] synonym: "superior semicircular canal" EXACT [] xref: AAO:0000058 xref: EHDAA2:0001959 xref: EHDAA:7802 xref: EMAPA:17299 xref: FMA:60187 xref: http://en.wikipedia.org/wiki/Anterior_semicircular_canal xref: http://linkedlifedata.com/resource/umls/id/C1288332 xref: http://www.snomedbrowser.com/Codes/Details/279764002 xref: MA:0001207 xref: NCIT:C33695 xref: TAO:0000314 xref: UMLS:C1288332 {source="ncithesaurus:Superior_Semicircular_Canal"} xref: ZFA:0000314 is_a: UBERON:0001840 ! semicircular canal property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000314", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from anterior semicircular canal primordium (TAO:0000469)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000314", ontology="TAO"} property_value: UBPROP:0000009 "detects angular acceleration" xsd:string [Term] id: UBERON:0001842 name: posterior semicircular canal namespace: uberon def: "The posterior semicircular canal is a part of the vestibular system and detects rotations of the head in the sagittal plane." [http://en.wikipedia.org/wiki/Posterior_semicircular_canal] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "canalis semicircularis posterior" RELATED LATIN [http://en.wikipedia.org/wiki/Posterior_semicircular_canal] synonym: "caudal vertical semicircular canal" RELATED [] synonym: "pars superior of labyrinth" RELATED [AAO:0000420] synonym: "posterior semicircular canals" RELATED [] synonym: "posterior semicircular duct" RELATED [] xref: AAO:0000420 xref: EHDAA2:0001489 xref: EHDAA:7796 xref: EMAPA:17296 xref: FMA:60190 xref: http://en.wikipedia.org/wiki/Posterior_semicircular_canal xref: http://linkedlifedata.com/resource/umls/id/C0229454 xref: http://www.snomedbrowser.com/Codes/Details/279762003 xref: MA:0001209 xref: NCIT:C33378 xref: TAO:0000262 xref: UMLS:C0229454 {source="ncithesaurus:Posterior_Semicircular_Canal"} xref: ZFA:0000262 is_a: UBERON:0001840 ! semicircular canal property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI property_value: IAO:0000116 "verify AAO" xsd:string property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000262", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from posterior semicircular canal primordium (TAO:0000412)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000262", ontology="TAO"} property_value: UBPROP:0000009 "detects angular acceleration" xsd:string [Term] id: UBERON:0001843 name: lateral semicircular canal namespace: uberon subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "horizontal semicircular canal" RELATED [] synonym: "lateral semicircular canals" RELATED [] synonym: "lateral semicircular duct" RELATED [] xref: EHDAA2:0000920 xref: EHDAA:7790 xref: EMAPA:17821 xref: FMA:60193 xref: http://en.wikipedia.org/wiki/Lateral_semicircular_canal xref: http://www.snomedbrowser.com/Codes/Details/279761005 xref: MA:0001208 xref: TAO:0000220 xref: ZFA:0000220 is_a: UBERON:0001840 ! semicircular canal property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000220", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from lateral semicircular canal primordium (TAO:0000232)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000220", ontology="TAO"} property_value: UBPROP:0000009 "detects angular acceleration" xsd:string [Term] id: UBERON:0001844 name: cochlea namespace: uberon def: "the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. [WP,modified]." [http://en.wikipedia.org/wiki/Cochlea, ISBN:0-683-40008-8, MP:0000031] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cochleae" RELATED PLURAL [] synonym: "cochlear duct" RELATED [] synonym: "cochlear organ" RELATED [BTO:0000267] synonym: "cochlear part of bony labyrinth" EXACT [] synonym: "lagena" EXACT SENSU [XAO:0000197] synonym: "lagenas" RELATED PLURAL [ZFA:0000374] xref: AAO:0000253 xref: BIRNLEX:1190 xref: BTO:0000267 xref: CALOHA:TS-0151 xref: EFO:0000357 xref: EMAPA:17597 xref: EV:0100363 xref: FMA:60201 xref: GAID:724 xref: http://en.wikipedia.org/wiki/Cochlea xref: http://linkedlifedata.com/resource/umls/id/C0009195 xref: http://linkedlifedata.com/resource/umls/id/C1278895 xref: http://www.snomedbrowser.com/Codes/Details/181187008 xref: MA:0000240 xref: MAT:0000144 xref: MESH:D003051 xref: MIAA:0000144 xref: NCIT:C12395 xref: NIFSTD_RETIRED:birnlex_883 xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA xref: TAO:0000374 xref: UMLS:C0009195 {source="BIRNLEX:1190"} xref: UMLS:C0009195 {source="ncithesaurus:Cochlea"} xref: UMLS:C1278895 {source="BIRNLEX:1190"} xref: VHOG:0000691 xref: XAO:0000197 xref: ZFA:0000374 relationship: part_of UBERON:0001839 {source="FMA", source="VHOG", source="XAO", source="ncit"} ! bony labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg xsd:anyURI property_value: UBPROP:0000001 "A spiral-shaped cavity in the petrous portion of the temporal bone of the inner ear, containing the nerve endings essential for hearing and forming one of the divisions of the labyrinth. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000691", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cochlea"} property_value: UBPROP:0000003 "Because achieving high sensitivity is generally advantageous for auditory organs, it is not surprising that evidence for cochlear amplification is also seen in nonmammals. Spontaneous otoacoustic emissions (SOAEs) are narrow-band sound signals emitted from the inner ear, and it is generally assumed that their energy derives from the hair-cell molecular motors underlying cochlear amplification. However, all terrestrial vertebrates studied so far (including amphibians) show very similar SOAEs. The most parsimonious explanation for the universality of this phenomena is that some kind of amplifying mechanism is at least as old as land vertebrates themselves.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000691", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1016/S0959-4388(98)80033-0 Manley GA, Koeppl C, Phylogenetic development of the cochlea and its innervation. Current Opinion in Neurobiology (1998)"} property_value: UBPROP:0000007 "cochlear" xsd:string property_value: UBPROP:0000008 "The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: 'In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)'" xsd:string property_value: UBPROP:0000008 "the cochlea is coiled in most mammals, monotremes being the exceptions." xsd:string property_value: UBPROP:0000012 "sources vary in connection to bony labyrinth" xsd:string {external_ontology="XAO"} [Term] id: UBERON:0001845 name: perilymph namespace: uberon def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Perilymph] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "liquor cotunnii" RELATED LATIN [http://en.wikipedia.org/wiki/Perilymph] synonym: "perilympha" RELATED [http://en.wikipedia.org/wiki/Perilymph] xref: EMAPA:36549 xref: FMA:60908 xref: GAID:1185 xref: http://en.wikipedia.org/wiki/Perilymph xref: http://linkedlifedata.com/resource/umls/id/C0031059 xref: MA:0002529 xref: MESH:A12.207.571.678 xref: NCIT:C33297 xref: TAO:0005413 xref: UMLS:C0031059 {source="ncithesaurus:Perilymph"} xref: ZFA:0005413 is_a: UBERON:0006586 ! otolymph [Term] id: UBERON:0001846 name: internal ear namespace: uberon def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [http://en.wikipedia.org/wiki/Internal_ear, http://www.ncbi.nlm.nih.gov/pubmed/16217737, ZFIN:curator] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "auris interna" RELATED [BTO:0000630] synonym: "inner ear" EXACT [] synonym: "labyrinth" RELATED [] synonym: "otocyst" RELATED [] xref: AAO:0000238 xref: BIRNLEX:1196 xref: BTO:0000630 xref: CALOHA:TS-0478 xref: EFO:0001363 xref: EHDAA2:0000831 xref: EHDAA:504 xref: EMAPA:16194 xref: EV:0100361 xref: FMA:60909 xref: GAID:871 xref: galen:InnerEar xref: http://linkedlifedata.com/resource/umls/id/C0022889 xref: http://linkedlifedata.com/resource/umls/id/C1268973 xref: http://www.snomedbrowser.com/Codes/Details/181189006 xref: http://www.snomedbrowser.com/Codes/Details/304982002 xref: Internal:ear xref: MA:0000237 xref: MAT:0000145 xref: MESH:D007758 xref: MIAA:0000145 xref: NCIT:C12499 xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA xref: TAO:0000217 xref: UMLS:C0022889 {source="ncithesaurus:Internal_Ear"} xref: UMLS:C0022889 {source="BIRNLEX:1196"} xref: UMLS:C1268973 {source="BIRNLEX:1196"} xref: VHOG:0000284 xref: XAO:0000192 xref: ZFA:0000217 relationship: part_of UBERON:0001690 ! ear property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI property_value: UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000217", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000284", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.366"} [Term] id: UBERON:0001847 name: lobule of pinna namespace: uberon def: "The soft lower part of the external ear, projecting below the antitragus." [http://en.wikipedia.org/wiki/Ear_lobe] subset: pheno_slim subset: uberon_slim synonym: "auricular lobule" EXACT [] synonym: "ear lobe" EXACT [] synonym: "ear lobule" RELATED [] synonym: "earlobe" EXACT [] synonym: "lobe of ear" EXACT [] synonym: "lobule of auricle" RELATED [] synonym: "lobule of auricle of ear" EXACT [] synonym: "lobulus auriculae" EXACT LATIN [FMA:60984, FMA:TA] synonym: "pinna lobule" EXACT [] xref: Ear:lobe xref: FMA:60984 xref: http://linkedlifedata.com/resource/umls/id/C0229315 xref: http://www.snomedbrowser.com/Codes/Details/362544006 xref: MA:0002468 xref: NCIT:C32999 xref: UMLS:C0229315 {source="ncithesaurus:Lobule_of_the_Auricle"} relationship: part_of UBERON:0001757 ! pinna property_value: UBPROP:0000010 "The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function." xsd:string {source="WP,unvetted"} [Term] id: UBERON:0001848 name: auricular cartilage namespace: uberon def: "cartilage of the pinna and much of the external ear canal." [http://medical-dictionary.thefreedictionary.com/auricular+cartilage] subset: pheno_slim synonym: "cartilage of pinna" EXACT [FMA:61013] synonym: "pinna cartilage" EXACT [] xref: EMAPA:35158 xref: FMA:61013 xref: http://www.snomedbrowser.com/Codes/Details/279627003 xref: MA:0001227 relationship: part_of UBERON:0001757 ! pinna relationship: part_of UBERON:0001867 ! cartilage of external ear [Term] id: UBERON:0001849 name: membranous labyrinth namespace: uberon alt_id: UBERON:0010113 def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. The membranous labyrinth is lodged within the bony labyrinth and has the same general form; it is, however, considerably smaller and is partly separated from the bony walls by a quantity of fluid, the perilymph.[FMA, WP]" [FMA:61022, http://en.wikipedia.org/wiki/Membranous_labyrinth] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "labyrinthus membranaceus" EXACT LATIN [http://en.wikipedia.org/wiki/Membranous_labyrinth] xref: AAO:0011060 xref: EHDAA2:0000899 xref: EHDAA:4698 xref: EMAPA:17815 xref: EV:0100367 xref: FMA:61022 xref: http://linkedlifedata.com/resource/umls/id/C0458700 xref: http://www.snomedbrowser.com/Codes/Details/263790009 xref: MA:0000242 xref: Membranous:labyrinth xref: NCIT:C33090 xref: UMLS:C0458700 {source="ncithesaurus:Membranous_Labyrinth"} xref: VHOG:0000729 xref: XAO:0000194 relationship: part_of UBERON:0001846 {source="FMA", source="MA"} ! internal ear property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png xsd:anyURI property_value: UBPROP:0000001 "A system of communicating epithelial sacs and ducts within the bony labyrinth, containing the endolymph. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000729", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/membranous+labyrinth"} property_value: UBPROP:0000003 "The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000729", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.366"} property_value: UBPROP:0000012 "inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the EMAPA term 'labyrinth' belong, we place them here for now" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0001850 name: lacrimal drainage system namespace: uberon def: "A collection of channels that connects the conjunctival sac with the nasal cavity, encompassing the lacrimal ducts, the lacrimal sac and the naso-lacrimal duct." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim synonym: "lacrimal duct" RELATED [FMA:61063, MA:0001295] synonym: "tear duct" RELATED [MA:0001295] xref: EMAPA:19245 xref: FMA:61063 xref: http://www.snomedbrowser.com/Codes/Details/280426002 xref: MA:0001295 relationship: part_of UBERON:0001750 {source="FMA"} ! lacrimal apparatus property_value: IAO:0000116 "TODO - resolve lacrimal canaliculus vs larcimal duct" xsd:string property_value: UBPROP:0000008 "chelonians lack a lacrimal duct, and lacrimal/harderian secretions remain in or spill from the conjunctival sac[PMID:7559104]" xsd:string [Term] id: UBERON:0001852 name: endolymph namespace: uberon def: "Transudate contained within the membranous labyrinth.[FMA]" [FMA:61112, http://en.wikipedia.org/wiki/Endolymph] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "endolympha" RELATED [http://en.wikipedia.org/wiki/Endolymph] synonym: "endolympha" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymph] synonym: "endolymphatic fluid" EXACT [] synonym: "Scarpa's fluid" RELATED [http://en.wikipedia.org/wiki/Endolymph] xref: EMAPA:36548 xref: FMA:61112 xref: GAID:1184 xref: http://en.wikipedia.org/wiki/Endolymph xref: http://linkedlifedata.com/resource/umls/id/C0014166 xref: MA:0002528 xref: MESH:A12.207.571.324 xref: NCIT:C32513 xref: TAO:0005414 xref: UMLS:C0014166 {source="ncithesaurus:Endolymph"} xref: ZFA:0005414 is_a: UBERON:0006586 ! otolymph property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI property_value: UBPROP:0000007 "otolymphic" xsd:string [Term] id: UBERON:0001853 name: utricle of membranous labyrinth namespace: uberon def: "the larger of the two otolith organs in the vestibule" [http://en.wikipedia.org/wiki/Utricle_(ear), http://www.ncbi.nlm.nih.gov/pubmed/15363417, ISBN:0-8036-0655-9, MGI:smb, MP:0006090] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth utricle" EXACT [] synonym: "utricle" EXACT [] synonym: "utriculus" EXACT [ZFA:0000700] synonym: "utriculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000625 xref: AAO:0011109 xref: BTO:0001807 xref: EHDAA2:0002153 xref: EHDAA:4726 xref: EMAPA:17293 xref: EV:0100368 xref: FMA:61113 xref: http://linkedlifedata.com/resource/umls/id/C0042158 xref: http://www.snomedbrowser.com/Codes/Details/279817006 xref: MA:0000247 xref: NCIT:C33844 xref: TAO:0000700 xref: UMLS:C0042158 {source="ncithesaurus:Utricle"} xref: Utricle:(ear) xref: VHOG:0000289 xref: XAO:0000195 xref: ZFA:0000700 is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ property_value: UBPROP:0000001 "The portion of the membranous labyrinth of the ear into which the semicircular ducts find their outlet. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414"} [Term] id: UBERON:0001854 name: saccule of membranous labyrinth namespace: uberon def: "the smaller of the two otolith organs in the vestibule" [http://en.wikipedia.org/wiki/Saccule, http://www.ncbi.nlm.nih.gov/pubmed/15363417, ISBN:0-8036-0655-9, MGI:smb, MP:0006089] comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "membranous labyrinth saccule" EXACT [] synonym: "saccule" EXACT [] synonym: "sacculus" EXACT [ZFA:0000428] synonym: "sacculus" RELATED LATIN [http://en.wikipedia.org/wiki/Saccule] synonym: "sacculus (labyrinthus vestibularis)" EXACT [] xref: AAO:0000550 xref: BTO:0001805 xref: EHDAA2:0001769 xref: EHDAA:4712 xref: EMAPA:17290 xref: EV:0100369 xref: FMA:61116 xref: http://en.wikipedia.org/wiki/Saccule xref: http://linkedlifedata.com/resource/umls/id/C0036029 xref: http://www.snomedbrowser.com/Codes/Details/279827000 xref: MA:0000246 xref: NCIT:C33503 xref: TAO:0000428 xref: UMLS:C0036029 {source="ncithesaurus:Saccule"} xref: VHOG:0000374 xref: XAO:0000196 xref: ZFA:0000428 is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI property_value: UBPROP:0000001 "The most ventral chamber of the membranous labyrinth. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) .[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414"} [Term] id: UBERON:0001855 name: cochlear duct of membranous labyrinth namespace: uberon def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [http://en.wikipedia.org/wiki/Cochlear_duct] subset: pheno_slim subset: uberon_slim synonym: "cochlea duct" EXACT [BIRNLEX:2562] synonym: "cochlear aqueduct" RELATED [] synonym: "cochlear duct" EXACT [] synonym: "ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Cochlear_duct] synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692] synonym: "membranous cochlea" RELATED [BTO:0001692] synonym: "Reissner's canal" EXACT [FMA:61119] synonym: "Reissners canal" EXACT [BIRNLEX:2562] synonym: "scala media" RELATED [http://en.wikipedia.org/wiki/Cochlear_duct] synonym: "scala medias" EXACT [BIRNLEX:2562] synonym: "scala of Loewenberg" RELATED [BTO:0001692] xref: BIRNLEX:2562 xref: BTO:0001692 xref: CALOHA:TS-0152 xref: Cochlear:duct xref: EHDAA2:0000262 xref: EHDAA:4718 xref: EMAPA:17598 xref: FMA:61119 xref: GAID:874 xref: http://linkedlifedata.com/resource/umls/id/C1281166 xref: http://linkedlifedata.com/resource/umls/id/C1323110 xref: http://www.snomedbrowser.com/Codes/Details/279849006 xref: MA:0000243 xref: MESH:D003053 xref: NCIT:C32335 xref: UMLS:C1281166 {source="BIRNLEX:2562"} xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"} xref: UMLS:C1323110 {source="BIRNLEX:2562"} xref: VHOG:0000507 relationship: part_of UBERON:0002499 {source="FMA", source="MA"} ! cochlear labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png xsd:anyURI property_value: IAO:0000116 "TODO - check cochlear duct vs cochlear aqueduct vs scala media" xsd:string property_value: UBPROP:0000001 "The coiled portion of the membranous labyrinth located inside the cochlea. It contains endolymph. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000507", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cochlear+duct"} property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) In most groups of gnathostomes, the caudoventral evagination of the sacculus forms a small lagena, and in some diapsids and mammals the lagena develops into a longer duct. The lagena becomes greatly elongated in therians and coils to form the cochlear duct.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000507", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414"} [Term] id: UBERON:0001856 name: semicircular duct namespace: uberon def: "Any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium" [http://dictionary.reference.com/browse/semicircular+duct] synonym: "ductus semicirculares" RELATED PLURAL [FMA:71880, FMA:TA] synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: EMAPA:32830 xref: FMA:61122 xref: http://linkedlifedata.com/resource/umls/id/C1323109 xref: http://www.snomedbrowser.com/Codes/Details/279833009 xref: MA:0000251 xref: NCIT:C33528 xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"} xref: VHOG:0000238 relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth property_value: IAO:0000116 "TODO - check canal vs duct. see Wikipedia:File:Gray927.png" xsd:string property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus (...); Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000238", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414 and p.58"} [Term] id: UBERON:0001857 name: anterior semicircular duct namespace: uberon synonym: "superior semicircular duct" RELATED [VHOG:0000246] xref: EMAPA:37411 {source="MA:th"} xref: FMA:61123 xref: http://www.snomedbrowser.com/Codes/Details/279836001 xref: MA:0001211 xref: VHOG:0000246 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001841 ! anterior semicircular canal property_value: UBPROP:0000003 "Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000246", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.53 and p.413-414"} [Term] id: UBERON:0001858 name: posterior semicircular duct namespace: uberon def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously." [http://en.wikipedia.org/wiki/Semicircular_canal] subset: uberon_slim xref: EMAPA:37413 {source="MA:th"} xref: FMA:61126 xref: http://www.snomedbrowser.com/Codes/Details/279835002 xref: MA:0001214 xref: Semicircular:canal xref: VHOG:0000248 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001842 ! posterior semicircular canal property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png xsd:anyURI property_value: UBPROP:0000003 "Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000248", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.53 and p.413-414"} property_value: UBPROP:0000009 "detect vertical head movements" xsd:string {source="WP"} [Term] id: UBERON:0001859 name: lateral semicircular duct namespace: uberon subset: uberon_slim synonym: "external semicircular duct" RELATED [] xref: EMAPA:37412 {source="MA:th"} xref: FMA:61129 xref: http://en.wikipedia.org/wiki/Lateral_semicircular_duct xref: http://www.snomedbrowser.com/Codes/Details/279834003 xref: MA:0001213 xref: VHOG:0000247 is_a: UBERON:0001856 ! semicircular duct relationship: part_of UBERON:0001843 ! lateral semicircular canal property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI property_value: UBPROP:0000003 "Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.58] ; In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000247", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414"} [Term] id: UBERON:0001860 name: endolymphatic duct namespace: uberon def: "the small membranous canal, connecting with both saccule and utricle of the membranous labyrinth, passing through the aqueduct of vestibule, and terminating in the endolymphatic sac" [MGI:anna, MGI:smb, MP:0006011] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "ductus endolymphaticus" EXACT LATIN [AAO:0000135] synonym: "ductus endolymphaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymphatic_duct] xref: AAO:0000135 xref: EMAPA:18580 xref: Endolymphatic:duct xref: FMA:61246 xref: GAID:886 xref: http://www.snomedbrowser.com/Codes/Details/362567008 xref: MA:0001187 xref: MESH:D004711 xref: TAO:0002194 xref: ZFA:0001705 relationship: part_of UBERON:0001849 ! membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png xsd:anyURI property_value: UBPROP:0000001 "Duct that is part of the inner ear and connects to the semicircular canals ending in a pouch.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002194", ontology="TAO", source="Endolymphatic:duct"} property_value: UBPROP:0000007 "endolymphatic" xsd:string [Term] id: UBERON:0001861 name: ductus reuniens namespace: uberon def: "The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity." [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] synonym: "canal of Henson" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] synonym: "canalis reuniens" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] synonym: "canalis reuniens of Hensen" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] synonym: "Hensen duct" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] synonym: "Hensen's duct" RELATED [http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen] xref: EMAPA:17287 xref: FMA:61252 xref: http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen xref: http://www.snomedbrowser.com/Codes/Details/279805009 xref: MA:0000244 relationship: part_of UBERON:0001862 {source="EMAPA"} ! vestibular labyrinth [Term] id: UBERON:0001862 name: vestibular labyrinth namespace: uberon def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856] subset: pheno_slim synonym: "inner ear vestibular component" EXACT [EHDAA2:0000832] synonym: "labyrinthus vestibularis" RELATED [BTO:0001856] synonym: "vestibular apparatus" RELATED [] synonym: "vestibular component" BROAD [] xref: BTO:0001856 xref: CALOHA:TS-0479 xref: EHDAA2:0000832 xref: EHDAA:4706 xref: EMAPA:17286 xref: EMAPA:17815 xref: FMA:61255 xref: http://linkedlifedata.com/resource/umls/id/C0042606 xref: http://www.snomedbrowser.com/Codes/Details/181188003 xref: Inner:ear xref: MA:0000245 xref: NCIT:C33871 xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"} xref: XAO:0004145 relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001863 name: scala vestibuli namespace: uberon def: "the division of the spiral canal of the cochlea lying on the apical side of the spiral lamina and vestibular membrane" [MGI:anna, MP:0003168] subset: pheno_slim subset: uberon_slim xref: EMAPA:35753 xref: FMA:61269 xref: http://www.snomedbrowser.com/Codes/Details/362578000 xref: MA:0001206 xref: Scala:vestibuli is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI [Term] id: UBERON:0001864 name: scala tympani namespace: uberon def: "the division of the spiral canal of the cochlea lying on the basal side of the spiral lamina" [MGI:anna, MP:0003167] subset: pheno_slim subset: uberon_slim xref: EMAPA:35752 xref: FMA:61272 xref: GAID:879 xref: http://www.snomedbrowser.com/Codes/Details/362579008 xref: MA:0001205 xref: MESH:D012533 xref: Scala:tympani is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI [Term] id: UBERON:0001865 name: cartilaginous external acoustic tube namespace: uberon synonym: "cartilaginous external acoustic meatus" EXACT [] synonym: "cartilaginous part of external acoustic meatus" EXACT [] synonym: "external acoustic meatus cartilaginous part" EXACT [] synonym: "meatus acusticus externus cartilagineus" EXACT LATIN [FMA:61289, FMA:TA] xref: EMAPA:37525 {source="MA:th"} xref: FMA:61289 xref: MA:0001234 relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0001867 name: cartilage of external ear namespace: uberon def: "A cartilage that is part of a external ear [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "external ear cartilage" EXACT [] xref: EMAPA:37706 {source="MA:th"} xref: FMA:61339 xref: GAID:103 xref: http://linkedlifedata.com/resource/umls/id/C0013445 xref: MA:0001886 xref: MESH:A02.165.207 xref: NCIT:C49225 xref: UMLS:C0013445 {source="ncithesaurus:External_Ear_Cartilage"} relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001908 name: optic tract namespace: uberon def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [http://en.wikipedia.org/wiki/Optic_tract, NIFSTD, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "optic lemniscus" EXACT [] synonym: "optic tracts" RELATED PLURAL [ZFA:0000252] synonym: "tractus optici" RELATED LATIN [NeuroNames:460] synonym: "tractus opticus" RELATED LATIN [http://en.wikipedia.org/wiki/Optic_tract] synonym: "visual pathway" RELATED [GAID:735] xref: BAMS:opt xref: BIRNLEX:1684 xref: BM:Tel-OT xref: DHBA:10589 xref: DMBA:17785 xref: EMAPA:16678 xref: EMAPA:35617 xref: FMA:62046 xref: GAID:735 xref: HBA:9309 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 {source="BIRNLEX:1684"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 xref: http://linkedlifedata.com/resource/umls/id/C0152405 xref: http://www.snomedbrowser.com/Codes/Details/280952003 xref: MA:0001099 xref: MBA:125 xref: MESH:D014795 xref: NCIT:C33218 xref: Optic:tract xref: TAO:0000252 xref: UMLS:C0152405 {source="BIRNLEX:1684"} xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract"} xref: VHOG:0001164 xref: XAO:0004101 xref: ZFA:0000252 relationship: part_of UBERON:0002104 ! visual system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png xsd:anyURI property_value: IAO:0000116 "relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'" xsd:string [Term] id: UBERON:0001927 name: medial geniculate body namespace: uberon def: "Nuclear complex of the thalamus situated on the caudal, subpial aspect of the thalamus (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 622)." [BIRNLEX:1670] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "corpus geniculatum mediale" EXACT [BIRNLEX:1670] synonym: "corpus geniculatus medialis" RELATED LATIN [NeuroNames:355] synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body] synonym: "medial geniculate complex" EXACT [] synonym: "medial geniculate complex of dorsal thalamus" RELATED [BAMS:MG] synonym: "medial geniculate nuclei" EXACT [] synonym: "medial geniculate nucleus" EXACT [] synonym: "MGB" RELATED [BTO:0002674] synonym: "MGN" BROAD ABBREVIATION [BIRNLEX:1670, NIFSTD:NeuroNames_abbrevSource] synonym: "nuclei corporis geniculati medialis" EXACT LATIN [FMA:62211, FMA:TA] synonym: "nucleus corporis geniculati medialis" RELATED LATIN [NeuroNames:355] synonym: "nucleus geniculatus medialis" RELATED LATIN [NeuroNames:355] xref: BAMS:C.gm. xref: BAMS:MG xref: BIRNLEX:1670 xref: BM:Die-Th-MG xref: BTO:0002674 xref: DHBA:10434 xref: DMBA:16462 xref: EFO:0001968 xref: EMAPA:35546 xref: EV:0100218 xref: FMA:62211 xref: HBA:12926 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=355 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=355 {source="BIRNLEX:1670"} xref: http://en.wikipedia.org/wiki/Medial_geniculate_body xref: http://linkedlifedata.com/resource/umls/id/C0086596 xref: http://www.snomedbrowser.com/Codes/Details/362378001 xref: MA:0000870 xref: MBA:475 xref: NCIT:C32843 xref: UMLS:C0086596 {source="BIRNLEX:1670"} xref: UMLS:C0086596 {source="ncithesaurus:Internal_Geniculate_Body"} relationship: part_of UBERON:0002105 {source="NIFSTD"} ! vestibulo-auditory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png xsd:anyURI [Term] id: UBERON:0001985 name: corneal endothelium namespace: uberon def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [http://en.wikipedia.org/wiki/Corneal_endothelium] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cornea endothelium" EXACT [OBOL:automatic] synonym: "endothelium of cornea" EXACT [OBOL:automatic] synonym: "epithelium posterius corneae" RELATED LATIN [http://en.wikipedia.org/wiki/Corneal_endothelium] xref: CALOHA:TS-0172 xref: Corneal:endothelium xref: EMAPA:35935 xref: FMA:63882 xref: GAID:891 xref: http://linkedlifedata.com/resource/umls/id/C0014259 xref: http://www.snomedbrowser.com/Codes/Details/368827009 xref: MA:0001242 xref: MESH:D004728 xref: NCIT:C12707 xref: TAO:0002186 xref: UMLS:C0014259 {source="ncithesaurus:Corneal_Endothelium"} xref: ZFA:0001687 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0000964 ! cornea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png xsd:anyURI [Term] id: UBERON:0001997 name: olfactory epithelium namespace: uberon alt_id: UBERON:0004853 def: "A sensory epithelium inside the nasal cavity that is responsible for detecting odors[WP]." [http://en.wikipedia.org/wiki/Olfactory_epithelium] comment: Genes: V1Rs, Trpc2 present in lamprey subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "main olfactory epithelium" EXACT [NCBIBook:NBK55971] synonym: "MOE" RELATED ABBREVIATION [NCBIBook:NBK55971] synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325] synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] synonym: "olfactory membrane" EXACT [BIRNLEX:2703] synonym: "olfactory sensory epithelium" EXACT [] synonym: "pseudostratified main olfactory epithelium" RELATED [http://www.ncbi.nlm.nih.gov/books/NBK55971/] synonym: "sensory olfactory epithelium" EXACT [] xref: AAO:0010158 xref: BIRNLEX:2703 xref: BTO:0000108 xref: CALOHA:TS-0703 xref: EFO:0001972 xref: EHDAA2:0001228 xref: EHDAA:4774 xref: EMAPA:17606 xref: FMA:64803 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 {source="BIRNLEX:2703"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 xref: http://linkedlifedata.com/resource/umls/id/C0599332 xref: http://www.snomedbrowser.com/Codes/Details/37623003 xref: MA:0001325 xref: MAT:0000445 xref: NCIT:C33203 xref: Olfactory:epithelium xref: TAO:0000554 xref: UMLS:C0599332 {source="BIRNLEX:2703"} xref: UMLS:C0599332 {source="ncithesaurus:Olfactory_Epithelium"} xref: VHOG:0000985 xref: ZFA:0000554 is_a: UBERON:0005384 ! nasal cavity epithelium relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png xsd:anyURI property_value: UBPROP:0000001 "Sensory lining of the medial wall, roof and anterior aspects of the main olfactory cavity (cavum principale).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000002 "relationship loss: part_of principal cavity (AAO:0000992)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO"} [Term] id: UBERON:0002104 name: visual system namespace: uberon alt_id: UBERON:0007036 def: "The sensory system subserving the sense of vision." [NIFSTD:FMAID_7191] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "photosensory system" EXACT [BILA:0000140] synonym: "visual organ system" EXACT [] xref: AAO:0000632 xref: BILA:0000140 xref: EMAPA:36003 xref: FMA:7191 xref: FMAID:7191 xref: http://linkedlifedata.com/resource/umls/id/C0587900 xref: http://www.snomedbrowser.com/Codes/Details/281831001 xref: MA:0002444 xref: NCIT:C12888 xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA xref: TAO:0001127 xref: UMLS:C0587900 {source="ncithesaurus:Visual_System"} xref: Visual:system xref: XAO:0003198 xref: ZFA:0001127 is_a: UBERON:0001032 ! sensory system property_value: UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000632", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0002105 name: vestibulo-auditory system namespace: uberon def: "Sensory system responsible for the perception of spatial orientation and auditory stimuli." [ZFA:0001138] subset: functional_classification subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "auditory organ system" EXACT [] synonym: "auditory system" RELATED [] synonym: "auditory/vestibular system" RELATED [] synonym: "vestibuloauditory system" EXACT [] synonym: "vestibuloauditory system" RELATED [] xref: AAO:0000631 xref: EMAPA:36002 xref: EMAPA:37985 {source="MA:th"} xref: FMA:78500 xref: TAO:0001138 xref: XAO:0003195 xref: ZFA:0001138 is_a: UBERON:0001032 ! sensory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg xsd:anyURI property_value: UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000631", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0002109 name: pair of nares namespace: uberon def: "Pair of nostrils." [http://en.wikipedia.org/wiki/Nares] subset: uberon_slim synonym: "nares" RELATED [] synonym: "nares set" EXACT [] synonym: "nostrils" EXACT [] synonym: "pair of nostrils" EXACT [] synonym: "set of nares" RELATED [FMA:72005] xref: FMA:72005 xref: http://en.wikipedia.org/wiki/Nares xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000004 ! nose property_value: UBPROP:0000012 "this is a 'set of anatomical planes' in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002128 name: superior olivary complex namespace: uberon def: "A a collection of brainstem nuclei that functions in multiple aspects of hearing and is an important component of the ascending and descending auditory pathways of the auditory system." [http://en.wikipedia.org/wiki/Superior_olivary_complex, ISBN:0-19-502694-2] subset: uberon_slim synonym: "nucleus olivaris superior" EXACT LATIN [FMA:72247, FMA:TA] synonym: "regio olivaris superioris" RELATED LATIN [NeuroNames:569] synonym: "superior olivary nuclei" EXACT [FMA:72247] synonym: "superior olivary nucleus" RELATED INCONSISTENT [FMA:72247] synonym: "superior olivary nucleus (Barr & Kiernan)" RELATED [NeuroNames:569] synonym: "superior olive" RELATED INCONSISTENT [FMA:72247, ISBN:0-19-502694-2] xref: BAMS:SOC xref: BIRNLEX:1307 xref: DHBA:12462 xref: EMAPA:35840 xref: EV:0100263 xref: FMA:72247 xref: HBA:9177 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=569 {source="BIRNLEX:1307"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=569 xref: http://en.wikipedia.org/wiki/Superior_olivary_complex xref: http://linkedlifedata.com/resource/umls/id/C0175427 xref: MA:0001026 xref: MBA:398 xref: UMLS:C0175427 {source="BIRNLEX:1307"} xref: VHOG:0001381 relationship: part_of UBERON:0016490 ! auditory system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png xsd:anyURI property_value: UBPROP:0000008 "In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO:0021718]" xsd:string property_value: UBPROP:0000008 "The SOC displays a significant interspecies variation, being largest in bats and rodents and smaller in primates." xsd:string [Term] id: UBERON:0002162 name: area postrema namespace: uberon def: "A small, rounded eminence on each side of the fourth ventricle, which receives nerve fibers from the solitary nucleus , spinal cord, and adjacent areas of the medulla. The area postrema lies outside the blood-brain barrier and its functions include acting as an emetic chemoreceptor." [http://en.wikipedia.org/wiki/Area_postrema, MESH:A08.186.211.132.810.406.286] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "AP" BROAD ABBREVIATION [BIRNLEX:2636, NIFSTD:NeuroNames_abbrevSource] synonym: "chemoreceptor trigger zone" RELATED [NeuroNames:772] xref: Area:postrema xref: BAMS:AP xref: BIRNLEX:2636 xref: BTO:0003425 xref: DHBA:12807 xref: EMAPA:35143 xref: FMA:72607 xref: GAID:591 xref: HBA:9522 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=772 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=772 {source="BIRNLEX:2636"} xref: http://linkedlifedata.com/resource/umls/id/C0228530 xref: http://linkedlifedata.com/resource/umls/id/C1289468 xref: http://www.snomedbrowser.com/Codes/Details/369039005 xref: MA:0001034 xref: MBA:207 xref: MESH:D031608 xref: TAO:0005146 xref: UMLS:C0228530 {source="BIRNLEX:2636"} xref: UMLS:C1289468 {source="BIRNLEX:2636"} xref: ZFA:0005146 is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png xsd:anyURI property_value: UBPROP:0000001 "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005146", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000009 "vomiting center in humans" xsd:string {source="WP"} [Term] id: UBERON:0002203 name: vasculature of eye namespace: uberon def: "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726, OBOL:automatic] subset: pheno_slim subset: vertebrate_core synonym: "eye vascular network" EXACT [OBOL:automatic] synonym: "eye vasculature" RELATED [] synonym: "ocular blood vessel" EXACT [ZFA:0007057] synonym: "ocular vasculature" EXACT [] synonym: "optic vasculature" RELATED [] synonym: "vascular network of eye" EXACT [OBOL:automatic] xref: FMA:74743 xref: http://www.snomedbrowser.com/Codes/Details/123846009 xref: TAO:0007057 xref: ZFA:0007057 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000019 ! camera-type eye property_value: UBPROP:0000012 "not part of the eye in ZFA. Note this changed to a blood vessel in ZFA" xsd:string {external_ontology="ZFA"} [Term] id: UBERON:0002212 name: macula of saccule of membranous labyrinth namespace: uberon def: "the oval neuroepithelial sensory receptor in the anterior wall of the saccule; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies" [MGI:anna, MP:0004330] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "macula of saccule" EXACT [] synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula saccule" EXACT [ZFA:0007000] synonym: "macula sacculi" EXACT LATIN [FMA:74944, FMA:TA] synonym: "macula sacculi" RELATED LATIN [http://en.wikipedia.org/wiki/Macula_of_saccule] synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic] synonym: "saccular macula" EXACT [ZFA:0007000] synonym: "saccular macula of membranous labyrinth" EXACT [] synonym: "saccular maculs" RELATED [] synonym: "saccule macula" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: EMAPA:35534 xref: FMA:74944 xref: http://en.wikipedia.org/wiki/Macula_of_saccule xref: http://linkedlifedata.com/resource/umls/id/C0229468 xref: http://www.snomedbrowser.com/Codes/Details/362572004 xref: MA:0001201 xref: NCIT:C33045 xref: TAO:0007000 xref: UMLS:C0229468 {source="ncithesaurus:Macula_of_Saccule"} xref: XAO:0004136 xref: ZFA:0007000 is_a: UBERON:0000054 ! macula relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0002214 name: macula of utricle of membranous labyrinth namespace: uberon def: "the neuroepithelial sensory receptor in the inferolateral wall of the utricle; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies; normally sensitive to linear acceleration in the longitudinal axis of the body and to gravitational influences" [MGI:anna, MP:0004333] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "macula of utricle" EXACT [] synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula utricle" EXACT [ZFA:0000030] synonym: "macula utriculi" EXACT LATIN [FMA:74960, FMA:TA] synonym: "macula utriculi" RELATED LATIN [http://en.wikipedia.org/wiki/Macula_of_utricle] synonym: "maculae utricle" RELATED PLURAL [ZFA:0000030] synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic] synonym: "utricle macula" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic] synonym: "utricular macula" RELATED [] synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic] xref: EFO:0003474 xref: EMAPA:35535 xref: FMA:74960 xref: http://en.wikipedia.org/wiki/Macula_of_utricle xref: http://linkedlifedata.com/resource/umls/id/C0229451 xref: http://www.snomedbrowser.com/Codes/Details/362568003 xref: MA:0001203 xref: NCIT:C33046 xref: TAO:0000030 xref: UMLS:C0229451 {source="ncithesaurus:Macula_of_Utricle"} xref: ZFA:0000030 is_a: UBERON:0000054 ! macula relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI [Term] id: UBERON:0002218 name: tympanic ring namespace: uberon def: "A C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mammals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]." [http://www.ncbi.nlm.nih.gov/pubmed/11237469, MP:0000030] comment: Gene notes: Gsc and Prx1 are essential for tympanic ring development subset: pheno_slim synonym: "ectotympanic ring" RELATED [http://en.wikipedia.org/wiki/Ectotympanic_ring] synonym: "os tympanicum" RELATED [EMAPA:19197] synonym: "tympanic annulus" RELATED [] synonym: "tympanic anulus" RELATED [] synonym: "tympanic membrane annulus" RELATED [] xref: AAO:0000615 xref: EMAPA:19197 xref: http://www.snomedbrowser.com/Codes/Details/95952001 xref: MA:0001225 relationship: part_of UBERON:0001756 {source="MA"} ! middle ear property_value: IAO:0000116 "check amphibians" xsd:string property_value: UBPROP:0000001 "Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000615", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000002 "relationship loss: part_of plectral apparatus (AAO:0000443)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000615", ontology="AAO"} property_value: UBPROP:0000012 "in AAO 'Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane'." xsd:string {external_ontology="AAO"} property_value: UBPROP:0000012 "in FMA, the tympanic ring is an anatomical line. Howevever http://www.ncbi.nlm.nih.gov/pubmed/11237469 states: 'the tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane'." xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002219 name: subfornical organ namespace: uberon def: "Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF)." [http://en.wikipedia.org/wiki/Subfornical_organ, NLXANAT:100314] subset: uberon_slim synonym: "organum subfornicale" RELATED LATIN [http://en.wikipedia.org/wiki/Subfornical_organ] xref: BAMS:SFO xref: DHBA:12104 xref: EMAPA:35830 xref: FMA:75260 xref: GAID:795 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=454 xref: MA:0000940 xref: MBA:338 xref: MESH:A08.713.840 xref: NLXANAT:100314 xref: Subfornical:organ is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png xsd:anyURI property_value: UBPROP:0000009 "induces drinking behavior after stimulation with angiotensin II[MESH]." xsd:string [Term] id: UBERON:0002223 name: endolymphatic sac namespace: uberon def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [http://en.wikipedia.org/wiki/Endolymphatic_sac] subset: pheno_slim subset: uberon_slim synonym: "saccus endolymphaticus" EXACT [AAO:0000551] synonym: "saccus endolymphaticus" RELATED LATIN [http://en.wikipedia.org/wiki/Endolymphatic_sac] xref: AAO:0000551 xref: EHDAA2:0000441 xref: EHDAA:7761 xref: EMAPA:17593 xref: Endolymphatic:sac xref: FMA:75639 xref: GAID:887 xref: http://www.snomedbrowser.com/Codes/Details/279810008 xref: MA:0001188 xref: MESH:D004712 xref: VHOG:0000791 is_a: UBERON:0006937 ! inner ear epithelium property_value: IAO:0000116 "EHDAA2 structure is embryonic" xsd:string property_value: UBPROP:0000001 "The blind extremity of the endolymphatic duct. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000791", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/endolymphatic+sac"} property_value: UBPROP:0000003 "Many adult anamniotes have an endolymphatic duct that opens onto the surface of the head. In other vertebrates, it either is lost or forms a small, deeply seated endolymphatic sac.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000791", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414 and Figure 12-15"} [Term] id: UBERON:0002226 name: basilar membrane of cochlea namespace: uberon def: "A stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [http://en.wikipedia.org/wiki/Basilar_membrane] subset: pheno_slim subset: uberon_slim synonym: "basilar membrane" EXACT [MA:0001190] synonym: "lamina basilaris ductus cochlearis" RELATED LATIN [http://en.wikipedia.org/wiki/Basilar_membrane] xref: Basilar:membrane xref: BIRNLEX:2521 xref: EMAPA:35166 xref: FMA:75706 xref: GAID:872 xref: http://linkedlifedata.com/resource/umls/id/C0004816 xref: http://www.snomedbrowser.com/Codes/Details/362574003 xref: MA:0001190 xref: MESH:D001489 xref: NCIT:C13179 xref: UMLS:C0004816 {source="BIRNLEX:2521"} xref: UMLS:C0004816 {source="ncithesaurus:Basilar_Membrane"} relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9b/Organ_of_corti.svg xsd:anyURI [Term] id: UBERON:0002227 name: spiral organ of cochlea namespace: uberon def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [http://en.wikipedia.org/wiki/Organ_of_Corti] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "auditory papilla" RELATED SENSU [ISBN:9780387714691] synonym: "auditory papillae" RELATED PLURAL [ISBN:9780387714691] synonym: "basilar papilla" RELATED SENSU [XAO:0003145] synonym: "cochlear spiral organ" EXACT [] synonym: "Corti's organ" RELATED [BTO:0001691] synonym: "organ of Corti" RELATED [] synonym: "organum spirale" EXACT LATIN [http://en.wikipedia.org/wiki/Organ_of_Corti] synonym: "papilla basilaris" RELATED SENSU [XAO:0003145] synonym: "spiral organ" EXACT [] synonym: "spiral organ of Corti" EXACT [] xref: BIRNLEX:2526 xref: BTO:0001691 xref: CALOHA:TS-0717 xref: EFO:0001364 xref: EMAPA:19061 xref: EV:0100364 xref: FMA:75715 xref: GAID:772 xref: http://en.wikipedia.org/wiki/Organ_of_Corti xref: http://linkedlifedata.com/resource/umls/id/C0029207 xref: http://www.snomedbrowser.com/Codes/Details/279841009 xref: MA:0001193 xref: NCIT:C33223 xref: ncithesaurus:Spiral_Organ_of_Corti xref: UMLS:C0029207 {source="ncithesaurus:Organ_of_Corti"} xref: UMLS:C0029207 {source="BIRNLEX:2526"} xref: VHOG:0001567 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg xsd:anyURI property_value: RO:0002174 NCBITaxon:8292 property_value: RO:0002174 NCBITaxon:8457 property_value: RO:0002175 NCBITaxon:40674 property_value: UBPROP:0000003 "The auditory hair cells in tetrapods are located in the inner ear in a structure known as the basilar papilla. In mammals this structure (along with some related structure) is called the organ of Corti.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001567", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.33"} property_value: UBPROP:0000008 "in basal early lizards, organized into 3 tonotopically organized areas, the outer areas lack a tectorial membrane[ISBN:9780387714691]" xsd:string [Term] id: UBERON:0002232 name: olfactory gland namespace: uberon def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [http://en.wikipedia.org/wiki/Olfactory_glands] subset: organ_slim subset: pheno_slim synonym: "Bowman's gland" RELATED [] synonym: "gland of Bowman" RELATED [] synonym: "glandulae olfactoriae" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_glands] synonym: "olfactory gland of Bowman" EXACT [] xref: AAO:0010162 xref: BTO:0001697 xref: EMAPA:35613 xref: FMA:75801 xref: http://www.snomedbrowser.com/Codes/Details/368891001 xref: MA:0000287 xref: Olfactory:glands is_a: UBERON:0012278 ! gland of nasal mucosa relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png xsd:anyURI property_value: UBPROP:0000001 "Multicellular mucous glands of the olfactory epithelium, present only in adults.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010162", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0002233 name: tectorial membrane of cochlea namespace: uberon def: "The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified]" [J:77634, MGI:anna, MP:0003149] subset: pheno_slim subset: uberon_slim synonym: "tectorial membrane" EXACT [MA:0001199] synonym: "tectorial membrane of spiral organ of cochlea" EXACT [] xref: BIRNLEX:2531 xref: EMAPA:35851 xref: FMA:75805 xref: GAID:876 xref: http://en.wikipedia.org/wiki/Tectorial_membrane_(cochlea) xref: http://linkedlifedata.com/resource/umls/id/C0039432 xref: http://linkedlifedata.com/resource/umls/id/C1184928 xref: http://www.snomedbrowser.com/Codes/Details/368960006 xref: MA:0001199 xref: MESH:A09.246.631.246.292.906 xref: NCIT:C33740 xref: UMLS:C0039432 {source="ncithesaurus:Tectorial_Membrane"} xref: UMLS:C1184928 {source="BIRNLEX:2531"} relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth property_value: UBPROP:0000001 "The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia[Wikipedia:Tectorial_membrane_(cochlea)]." xsd:string {source="http://en.wikipedia.org/wiki/Tectorial_membrane_(cochlea)"} property_value: UBPROP:0000008 "in some squamate lineages, the tectorial membrane may not cover the whole cochlear duct/papilla. In some lineages, the tectorial membrane is divided into units called sallets[ISBN:9780387714691]" xsd:string [Term] id: UBERON:0002255 name: vomeronasal organ namespace: uberon def: "An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base." [VHOG:0000665] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "Jacobson's organ" EXACT [XAO:0000272] synonym: "organ of Jacobsen" RELATED [] synonym: "organon vomeronasale" EXACT LATIN [] synonym: "organum vomeronasale" EXACT LATIN [http://en.wikipedia.org/wiki/Vomeronasal_organ] synonym: "VNO" RELATED [VHOG:0000665] xref: AAO:0000997 xref: BTO:0002608 xref: EFO:0001934 xref: EHDAA2:0002211 xref: EHDAA:7865 xref: EMAPA:17612 xref: FMA:77280 xref: GAID:354 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1566 xref: http://www.snomedbrowser.com/Codes/Details/361346007 xref: MA:0000289 xref: MESH:A04.531.591.940 xref: VHOG:0000665 xref: Vomeronasal:organ xref: XAO:0000272 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0009954 ! vomeronasal system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png xsd:anyURI property_value: UBPROP:0000001 "An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000665", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/vomeronasal+organ"} property_value: UBPROP:0000003 "(...) the vomeronasal organ is known only in some tetrapods. It is absent in most turtles, crocodiles, birds, some bats, and aquatic mammals. In amphibians, it is in a recessed area off the main nasal cavity. (...) In mammals possesing this organ, it is an isolated area of olfactory membrane within the nasal cavity that is usually connected to the mouth via the nasopalatine duct (reference 1); The opinions concerning the presence and functioning of the vomeronasal organ in humans are controversial. The vomeronasal cavities appear early in human foetuses. (...) Historical examination of the nasal septum revealed the presence of vomeronasal cavities in approximately 70% of adults. In contrast to the situation in other mammals, the organ is not supported by a rigid tube of bone or cartilage (reference 2); (...) the best evidence for the homology of the human VNO to that of other primates (and of mammals in general) is ontogenetic in nature, based on a common embryonic origin from a thickening (vomeronasal primordium) on the medial aspect of each olfactory pit (reference 3); (...) suggesting that lungfish possess a region homologous to the accessory olfactory bulb of tetrapods. Based on these results, it seems appropriate to refer to the recess epithelium as a primordium of the vomeronasal organ (reference 4). [debated][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000665", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.669 (ref.1), http://www.ncbi.nlm.nih.gov/pubmed/9866877 Doving KB, Trotier D, Review: Structure and function of the vomeronasal organ. The Journal of Experimental Biology (1998) (ref.2), DOI:10.1046/j.1469-7580.2001.19810077.x Smith TD, Siegel MI, Bonar CJ, Bhatnagar KP, Mooney MP, Burrows AM, Smith MA, Maico LM, The existence of the vomeronasal organ in postnatal chimpanzees and evidence for its homology with that of humans. J Anat (2001) (ref.3) , DOI:10.1002/ar.22415 Nakamuta S, Nakamuta N, Taniguchi K, Taniguchi K, Histological and ultrastructural characteristics of the primordial vomeronasal organ in lungfish. Anat Rec (Hoboken) (2012) (ref.4)"} property_value: UBPROP:0000008 "Generally formed only in tetrapods; lungfish have rudimentary VN organs; true VN organs are not normally found in recent fishes, birds, aquatic reptiles, aquatic mammals (Bertmar 1980). Humans: Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans was controversial, though most studies agree the organ regresses during fetal development. Many genes essential for VNO function in animals (such as TRPC2) are non-functional in humans (Liman ER. Use it or lose it: molecular evolution of sensory signaling in primates. Pflugers Arch. 2006;453(2):125-31.)" xsd:string [Term] id: UBERON:0002268 name: olfactory organ namespace: uberon def: "An organ that houses olfactory neurons and is responsible for the sense of smell. Examples include the vertebrate nose and the Drosophila dorsal organ." [UBERON:cjm] subset: functional_classification synonym: "main olfactory organ" NARROW [] synonym: "olfactory neuroepithelium" RELATED [BTO:0001772] synonym: "olfactory organ" EXACT [BTO:0001772] synonym: "olfactory sense organ" EXACT [] synonym: "olfactory sensory organ" EXACT [FBbt:00005158] synonym: "organ olfactus" RELATED [BTO:0001772] synonym: "organum olfactorium" RELATED [BTO:0001772] synonym: "primary olfactory organ" NARROW [] xref: AAO:0010180 xref: BTO:0001772 xref: FBbt:00005158 xref: FMA:77659 xref: VHOG:0000287 xref: XAO:0000273 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ property_value: IAO:0000116 "An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint" xsd:string property_value: UBPROP:0000012 "fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint" xsd:string [Term] id: UBERON:0002269 name: pupillary membrane namespace: uberon def: "The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks." [http://en.wikipedia.org/wiki/Persistent_pupillary_membrane] xref: FMA:77663 xref: http://en.wikipedia.org/wiki/Persistent_pupillary_membrane xref: MA:0001293 relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0002270 name: hyaloid artery namespace: uberon def: "An artery that is part of the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens." [http://en.wikipedia.org/wiki/Hyaloid_artery] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria hyaloidea" EXACT LATIN [http://en.wikipedia.org/wiki/Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [http://en.wikipedia.org/wiki/Hyaloid_artery] synonym: "Cloquets canal" RELATED [http://en.wikipedia.org/wiki/Hyaloid_artery] synonym: "hyaloid arteries" RELATED PLURAL [ZFA:0005045] xref: EHDAA2:0004072 xref: EMAPA:19242 xref: FMA:77670 xref: http://www.snomedbrowser.com/Codes/Details/308790003 xref: Hyaloid:artery xref: TAO:0005045 xref: VHOG:0001478 xref: XAO:0004155 xref: ZFA:0005045 is_a: UBERON:0005492 ! hyaloid vessel property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI property_value: UBPROP:0000001 "Artery that is internal to the eye. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005045", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "In humans, Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla" xsd:string [Term] id: UBERON:0002276 name: lamina of spiral limbus namespace: uberon def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [http://en.wikipedia.org/wiki/Limbus_laminae_spiralis] subset: pheno_slim subset: uberon_slim synonym: "limbus lamina spiralis" EXACT [MA:0001191] synonym: "limbus laminae spiralis" EXACT [FMA:77721] synonym: "limbus laminae spiralis osseae" EXACT [] synonym: "spiral limbus" RELATED [] synonym: "spiral limbus lamina" EXACT [FMA:77721] xref: EMAPA:35496 xref: FMA:77721 xref: http://en.wikipedia.org/wiki/Limbus_laminae_spiralis xref: MA:0001191 relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray930.png xsd:anyURI [Term] id: UBERON:0002277 name: spiral sulcus namespace: uberon def: "A concavity in the floor of the cochlear duct, formed by either the overhanging vestibular lip (inner spiral sulcus) or the spiral prominence and the spiral organ (outer spiral sulcus)." [http://orcid.org/0000-0002-6601-2165] synonym: "sulcus spiralis" EXACT [] xref: EMAPA:35800 xref: FMA:77744 xref: MA:0001195 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002278 name: perilymphatic space namespace: uberon def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource] subset: vertebrate_core synonym: "cisterna perilymphatica" RELATED [http://medical-dictionary.thefreedictionary.com/perilymphatic+space] synonym: "Retzius space" RELATED [] synonym: "spatium perilymphaticum" RELATED [http://medical-dictionary.thefreedictionary.com/perilymphatic+space] xref: BTO:0002083 xref: FMA:77745 xref: http://www.snomedbrowser.com/Codes/Details/362576001 xref: Perilymphatic:space xref: ZFA:0005459 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001846 {source="ZFA"} ! internal ear [Term] id: UBERON:0002279 name: vestibular aqueduct namespace: uberon def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vestibular_aqueduct] subset: pheno_slim subset: uberon_slim synonym: "aqueductus vestibuli" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibular_aqueduct] xref: FMA:77821 xref: GAID:885 xref: MA:0001186 xref: MESH:D014723 xref: Vestibular:aqueduct relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI [Term] id: UBERON:0002280 name: otolith namespace: uberon def: "Acellular structure composed of calcium carbonate located in the otolith organ." [http://en.wikipedia.org/wiki/Otolith, ZFIN:curator] subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "immature otolith" RELATED [] synonym: "immature otoliths" RELATED [] synonym: "otoconia" RELATED PLURAL [] synonym: "otoconial crystal" RELATED [MP:0002894] synonym: "otoconium" EXACT [] synonym: "otoliths" EXACT PLURAL [] synonym: "statoconia" RELATED PLURAL [] synonym: "statoconium" EXACT [] synonym: "statolith" RELATED [] xref: ANISEED:777311 xref: ANISEED:874485 xref: EMAPA:37924 {source="MA:th"} xref: FMA:77826 xref: http://en.wikipedia.org/wiki/Otolith xref: http://linkedlifedata.com/resource/umls/id/C0029894 xref: http://www.snomedbrowser.com/Codes/Details/368951003 xref: NCIT:C33230 xref: TAO:0001621 xref: UMLS:C0029894 {source="ncithesaurus:Otolith"} xref: ZFA:0001617 relationship: part_of UBERON:0002519 {source="MP", source="Wikipedia"} ! otolithic part of statoconial membrane property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI property_value: IAO:0000116 "Currently represented as part of the otolith membrane, but they may also be considered to be embedded in this membrane" xsd:string property_value: UBPROP:0000001 "Portion of organism substance composed of calcium carbonate located in the otolith organ.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001621", ontology="TAO", source="TAO:wd"} property_value: UBPROP:0000002 "relationship loss: develops_from immature otolith (TAO:0000139)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001621", ontology="TAO"} property_value: UBPROP:0000007 "otoconial" xsd:string property_value: UBPROP:0000007 "otolithic" xsd:string property_value: UBPROP:0000008 "Mammals have many tiny otoconia and fish have three large otoliths[ZFIN:df]" xsd:string [Term] id: UBERON:0002281 name: vestibular membrane of cochlear duct namespace: uberon def: "A membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [http://en.wikipedia.org/wiki/Reissner's_membrane] subset: pheno_slim subset: uberon_slim synonym: "membrana vestibularis ductus cochlearis" EXACT [MP:0006021] synonym: "paries vestibularis ductus cochlearis" EXACT [MP:0006021] synonym: "Reissner membrane" EXACT [] synonym: "Reissner's membrane" EXACT [FMA:77829] synonym: "superior wall of cochlear duct" EXACT [FMA:77829] synonym: "vestibular membrane" EXACT [MA:0001200] synonym: "vestibular membrane" RELATED [MP:0006021] synonym: "vestibular membrane of Reissner" EXACT [FMA:77829] synonym: "vestibular wall of cochlear duct" EXACT [MP:0006021] xref: EMAPA:35922 xref: FMA:77829 xref: http://www.snomedbrowser.com/Codes/Details/362575002 xref: MA:0001200 xref: NCIT:C33083 xref: Reissner's:membrane relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png xsd:anyURI [Term] id: UBERON:0002282 name: stria vascularis of cochlear duct namespace: uberon def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [http://en.wikipedia.org/wiki/Stria_vascularis] subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "psalterial cord" EXACT [MP:0000048] synonym: "stria vascularis" EXACT [] synonym: "stria vascularis ductus cochlearis" RELATED LATIN [BTO:0001819] synonym: "stria vascularis of cochlea" EXACT [FMA:77832] synonym: "vascular stria of cochlear duct" RELATED [BTO:0001819] synonym: "vascular stripe of cochlear duct" EXACT [MP:0000048] xref: BIRNLEX:2525 xref: BTO:0001819 xref: CALOHA:TS-0982 xref: EFO:0001644 xref: EMAPA:35827 xref: FMA:77832 xref: GAID:875 xref: http://linkedlifedata.com/resource/umls/id/C0229477 xref: http://www.snomedbrowser.com/Codes/Details/279842002 xref: MA:0001198 xref: MESH:D013316 xref: Stria:vascularis xref: UMLS:C0229477 {source="BIRNLEX:2525"} relationship: part_of UBERON:0001855 {source="FMA", source="MA"} ! cochlear duct of membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI property_value: UBPROP:0000012 "represented as a wall in FMA. MESH def implies part of spiral ligament but better represented as adjacency / overlaps" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0002295 name: scala media namespace: uberon def: "the division of the spiral canal of the cochlea that contains the organ of Corti (the neuroepithelial receptor organ for hearing)" [http://www.ncbi.nlm.nih.gov/pubmed/1680563, MGI:anna, MP:0003169] comment: located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [Wikipedia:Scala_media] subset: pheno_slim subset: uberon_slim synonym: "cochlear duct" RELATED [] xref: EHDAA2:0000262 xref: EMAPA:35751 xref: FMA:79789 xref: MA:0002458 xref: Scala:media is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png xsd:anyURI property_value: IAO:0000116 "TODO - check cochlear duct vs cochlear aqueduct vs scala media" xsd:string [Term] id: UBERON:0002364 name: tympanic membrane namespace: uberon def: "A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [http://en.wikipedia.org/wiki/Tympanic_membrane, http://www.ncbi.nlm.nih.gov/pubmed/11237469] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "ear drum" EXACT [] synonym: "eardrum" EXACT [] synonym: "lateral wall of tympanic cavity" EXACT [] synonym: "membranous wall of tympanic cavity" EXACT [] synonym: "myrinx" EXACT [] synonym: "paries membranaceus cavi tympani" EXACT LATIN [FMA:9595, FMA:TA] synonym: "Rivinus' membrane" EXACT [] synonym: "tympanum" RELATED [http://en.wikipedia.org/wiki/Tympanic_membrane] xref: EMAPA:19062 xref: EV:0100358 xref: FMA:9595 xref: GAID:870 xref: http://linkedlifedata.com/resource/umls/id/C0041445 xref: http://www.snomedbrowser.com/Codes/Details/181180005 xref: MA:0000257 xref: MESH:A09.246.397.873 xref: NCIT:C12502 xref: Tympanic:membrane xref: UMLS:C0041445 {source="ncithesaurus:Tympanic_Membrane"} xref: VHOG:0001146 xref: XAO:0000212 relationship: part_of UBERON:0001756 {source="MA"} ! middle ear property_value: UBPROP:0000001 "The thin membrane which closes externally the cavity of the middle ear and is deeply sited at the bottom of the external auditory meatus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001146", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "In particular, a tympanic membrane was not present in the earliest tetrapods (...). An ear utilizing a tympanic membrane evolved independently at least three times in tetrapods: (1) in the lineage that leads to anurans (frogs), (2) in the line of evolution to turtles and diapsids, and (3) in the late synapsid lineage that gave rise to mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001146", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.418"} property_value: UBPROP:0000011 "The tympanic membrane (TM) has three layers, two epithelia provided by the external acoustic meatus (EAM) and the MEC, derived respectively from the first pharyngeal cleft and pouch, and a mesenchymally derived fibrous stratum" xsd:string property_value: UBPROP:0000012 "most AOs consider this part of the middle ear, so we go with this and place it in the middle ear as a border to the external, although it could be considered to overlap the external ear in that it has an EAM layer as part - for this reason we do not consider middle and external ear to be spatially disjoint." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469"} [Term] id: UBERON:0002392 name: nasolacrimal duct namespace: uberon def: "the paired channels leading from the lacrimal sacs to the inferior meatus of the nose, through which tears are conducted through the nasal cavity" [ISBN:0-683-40008-8, MP:0008969] subset: pheno_slim subset: uberon_slim synonym: "d. nasolacrimalis" RELATED LATIN [http://en.wikipedia.org/wiki/Nasolacrimal_duct] synonym: "nasolacrimal duct - posterior naris" BROAD [VHOG:0000664] synonym: "tear duct" RELATED [http://en.wikipedia.org/wiki/Nasolacrimal_duct] xref: AAO:0000643 xref: EHDAA2:0001237 xref: EHDAA:7849 xref: EHDAA:9094 xref: EMAPA:17853 xref: FMA:9703 xref: GAID:902 xref: http://linkedlifedata.com/resource/umls/id/C0027437 xref: http://www.snomedbrowser.com/Codes/Details/280643009 xref: MA:0001299 xref: MESH:D009301 xref: Nasolacrimal:duct xref: NCIT:C33161 xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA xref: UMLS:C0027437 {source="ncithesaurus:Nasolacrimal_Duct"} xref: VHOG:0000664 relationship: part_of UBERON:0001850 ! lacrimal drainage system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI property_value: UBPROP:0000003 "The nasolacrimal duct is probably homologous to the posterior (excurrent) naris of actinopterygian fishes.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000664", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.256"} property_value: UBPROP:0000010 "the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue" xsd:string [Term] id: UBERON:0002393 name: pharyngotympanic tube namespace: uberon def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]" [FMA:FMA, http://en.wikipedia.org/wiki/Eustachian_tube] subset: organ_slim subset: pheno_slim subset: uberon_slim synonym: "auditory tube" EXACT [MA:0000255] synonym: "eustachian tube" RELATED [] synonym: "internal auditory tube" EXACT [] synonym: "pharyngo-tympanic tube" EXACT [MA:0000255] synonym: "tuba auditiva" EXACT LATIN [FMA:9705, FMA:TA] synonym: "tuba auditiva; tuba auditoria; tuba auditivea" RELATED LATIN [http://en.wikipedia.org/wiki/Eustachian_tube] synonym: "tuba auditoria" EXACT LATIN [FMA:9705, FMA:TA] synonym: "tuba pharyngotympanica" RELATED LATIN [] xref: AAO:0000146 xref: AAO:0011016 xref: EMAPA:17601 xref: Eustachian:tube xref: EV:0100359 xref: FMA:9705 xref: GAID:869 xref: http://linkedlifedata.com/resource/umls/id/C0015183 xref: MA:0000255 xref: NCIT:C12500 xref: UMLS:C0015183 {source="ncithesaurus:Eustachian_Tube"} xref: VHOG:0001145 xref: XAO:0000213 relationship: part_of UBERON:0001756 ! middle ear property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/40/Ear-anatomy-text-small-en.svg xsd:anyURI property_value: IAO:0000116 "we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship" xsd:string property_value: UBPROP:0000001 "Furrow on the ventral surface of the otic capsule, and occasionally also the parasphenoid, that houses the Eustachian tube.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000146", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000001 "The narrow channel connecting the nasopharynx and the middle ear. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001145", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/auditory+tube"} property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000146", ontology="AAO"} property_value: UBPROP:0000003 "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001145", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417"} [Term] id: UBERON:0002443 name: choroidal blood vessel namespace: uberon def: "A blood vessel that is part of a choroid [Automatically generated definition]." [OBOL:automatic] comment: cannot find singular in FMA, using Set class subset: pheno_slim synonym: "blood vessel of choroid" EXACT [OBOL:automatic] synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic] synonym: "blood vessel of choroidea" EXACT [OBOL:automatic] synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic] synonym: "choroid blood vessel" EXACT [OBOL:automatic] synonym: "choroid blood vessels" EXACT [] synonym: "choroid blood vessels set" EXACT [] synonym: "choroid coat blood vessel" EXACT [OBOL:automatic] synonym: "choroidea blood vessel" EXACT [OBOL:automatic] synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic] synonym: "set of choroid blood vessels" RELATED [FMA:76550] synonym: "vasa sanguinea choroideae" EXACT LATIN [FMA:76550, FMA:TA] xref: EMAPA:17828 xref: FMA:76550 xref: MA:0001237 relationship: part_of UBERON:0001776 ! optic choroid [Term] id: UBERON:0002444 name: lens fiber namespace: uberon def: "A region of the lens consisting of packed elongated enucleate cells packed with crystallin" [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "fibrae lentis" EXACT LATIN [FMA:76827, FMA:TA] synonym: "lens fibers" EXACT [] synonym: "lens fibers set" EXACT [] synonym: "lens fibre" RELATED [EMAPA:17841] synonym: "lens fibres" EXACT [] synonym: "set of lens fibers" RELATED [FMA:76827] xref: BTO:0000724 xref: CALOHA:TS-0544 xref: EHDAA:4745 xref: EHDAA:9065 xref: EMAPA:17841 xref: FMA:76827 xref: http://linkedlifedata.com/resource/umls/id/C0229224 xref: Lens_fibers xref: MA:0001304 xref: NCIT:C32976 xref: RETIRED_EHDAA2:0000979 xref: UMLS:C0229224 {source="ncithesaurus:Lens_Fiber"} xref: VHOG:0000444 xref: XAO:0004096 relationship: part_of UBERON:0000965 ! lens of camera-type eye property_value: UBPROP:0000001 "Fibres resembling a ribbon and arranged in very thin plates in the lens. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000444", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "(...) the line, or Y, or star sutures common to mammalian lenses, including those of primates. In the case of line or Y sutures, the overlapping of lens fibers in each successive shell is coincident and results in the formation of four or six three-dimensional suture planes that extend from the lens nucleus to the periphery.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000444", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1167/iovs.03-0466 Sivak JG, Through the lens clearly: phylogeny and development, The Proctor lecture. Investigative ophthalmology and visual science (2004)"} [Term] id: UBERON:0002448 name: fungiform papilla namespace: uberon def: "Any of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue" [MGI:smb, MP:0006257] subset: pheno_slim subset: uberon_slim synonym: "fungiform papilla of tongue" EXACT [FMA:54821] synonym: "fungiform papillae" EXACT PLURAL [] synonym: "fungiform papillae set" EXACT PLURAL [] synonym: "papillae fungiformes" RELATED LATIN [http://en.wikipedia.org/wiki/Fungiform_papilla] xref: BIRNLEX:4106 xref: EMAPA:18272 xref: FMA:54821 xref: Fungiform:papilla xref: http://linkedlifedata.com/resource/umls/id/C0226968 xref: http://linkedlifedata.com/resource/umls/id/C0545784 xref: http://linkedlifedata.com/resource/umls/id/C1267558 xref: http://www.snomedbrowser.com/Codes/Details/80673002 xref: MA:0001595 xref: NCIT:C32644 xref: UMLS:C0226968 {source="BIRNLEX:4106"} xref: UMLS:C0545784 {source="BIRNLEX:4106"} xref: UMLS:C0545784 {source="ncithesaurus:Fungiform_Papilla"} xref: UMLS:C1267558 {source="BIRNLEX:4106"} is_a: UBERON:0014389 ! gustatory papilla of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png xsd:anyURI property_value: UBPROP:0000001 "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted][Wikipedia:Fungiform_papilla]." xsd:string {source="Fungiform:papilla"} property_value: UBPROP:0000008 "In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006]" xsd:string [Term] id: UBERON:0002467 name: filiform papilla namespace: uberon def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [http://en.wikipedia.org/wiki/Filiform_papilla] subset: pheno_slim subset: uberon_slim synonym: "filiform papilla of tongue" EXACT [FMA:54820] synonym: "filiform papillae" EXACT [] synonym: "filiform papillae set" EXACT [] synonym: "papillae filiformes" RELATED LATIN [http://en.wikipedia.org/wiki/Filiform_papilla] xref: BIRNLEX:4104 xref: EMAPA:18873 xref: Filiform:papilla xref: FMA:54820 xref: http://linkedlifedata.com/resource/umls/id/C0226966 xref: http://linkedlifedata.com/resource/umls/id/C0545782 xref: http://linkedlifedata.com/resource/umls/id/C1267556 xref: http://www.snomedbrowser.com/Codes/Details/58743008 xref: MA:0002678 xref: NCIT:C32604 xref: UMLS:C0226966 {source="BIRNLEX:4104"} xref: UMLS:C0545782 {source="ncithesaurus:Filiform_Papilla"} xref: UMLS:C0545782 {source="BIRNLEX:4104"} xref: UMLS:C1267556 {source="BIRNLEX:4104"} is_a: UBERON:0001726 ! papilla of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1016.png xsd:anyURI [Term] id: UBERON:0002468 name: foliate papilla namespace: uberon def: "Any of the papillae located on the sides of the tongue" [ISBN:0-8036-0655-9, MGI:smb, MP:0006259] subset: pheno_slim subset: uberon_slim synonym: "foliate papilla of tongue" EXACT [FMA:54823] synonym: "foliate papillae" EXACT [] synonym: "foliate papillae set" EXACT [] synonym: "papillae foliatae" RELATED LATIN [http://en.wikipedia.org/wiki/Foliate_papilla] xref: BIRNLEX:4105 xref: EMAPA:32788 xref: FMA:54823 xref: Foliate:papilla xref: http://linkedlifedata.com/resource/umls/id/C0226969 xref: http://linkedlifedata.com/resource/umls/id/C0545785 xref: http://www.snomedbrowser.com/Codes/Details/362098003 xref: MA:0002679 xref: NCIT:C32619 xref: UMLS:C0226969 {source="BIRNLEX:4105"} xref: UMLS:C0545785 {source="ncithesaurus:Foliate_Papilla"} xref: UMLS:C0545785 {source="BIRNLEX:4105"} is_a: UBERON:0014389 ! gustatory papilla of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png xsd:anyURI property_value: UBPROP:0000001 "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted][Wikipedia:Foliate_papilla]." xsd:string {source="Foliate:papilla"} [Term] id: UBERON:0002479 name: dorsal lateral geniculate nucleus namespace: uberon def: "The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe." [http://www.medilexicon.com/medicaldictionary.php?t=61422] synonym: "corpus geniculatum laterale (Hassler)" RELATED LATIN [NeuroNames:353] synonym: "DLG" BROAD ABBREVIATION [BIRNLEX:1595, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] synonym: "dorsal part of the lateral geniculate complex" RELATED [NeuroNames:353] synonym: "lateral geniculate complex, dorsal part" EXACT [] synonym: "lateral geniculate nucleus dorsal part" RELATED [BAMS:LGd] synonym: "lateral geniculate nucleus, dorsal part" EXACT [NeuroNames:353] synonym: "nucleus corporis geniculati lateralis, pars dorsalis" RELATED LATIN [NeuroNames:353] synonym: "nucleus dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:62214, FMA:TA] synonym: "nucleus geniculatus lateralis dorsalis" RELATED LATIN [NeuroNames:353] synonym: "nucleus geniculatus lateralis pars dorsalis" EXACT [BIRNLEX:1595] xref: BAMS:DLG xref: BAMS:LGd xref: BIRNLEX:1595 xref: BM:GLd xref: DHBA:10430 xref: DMBA:16436 xref: EMAPA:35290 xref: FMA:62214 xref: HBA:4440 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=353 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=353 {source="BIRNLEX:1595"} xref: http://linkedlifedata.com/resource/umls/id/C0175292 xref: MA:0002775 xref: MBA:170 xref: PBA:128013074 xref: UMLS:C0175292 {source="BIRNLEX:1595"} relationship: part_of UBERON:0002104 {source="NIFSTD"} ! visual system [Term] id: UBERON:0002488 name: helix of outer ear namespace: uberon def: "The helix is the prominent rim of the pinna." [http://en.wikipedia.org/wiki/Helix] subset: pheno_slim subset: uberon_slim synonym: "helical part of pinna" EXACT [] synonym: "helix" EXACT [MA:0002793] synonym: "helix (auricula)" EXACT [] synonym: "helix of auricle of ear" EXACT [] synonym: "helix of ear" EXACT [] synonym: "helix of pinna" EXACT [] xref: FMA:60992 xref: Helix:(ear) xref: http://linkedlifedata.com/resource/umls/id/C0229304 xref: http://www.snomedbrowser.com/Codes/Details/279607004 xref: MA:0002793 xref: NCIT:C32724 xref: OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA xref: UMLS:C0229304 {source="ncithesaurus:Helix"} relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0002496 name: stapes base namespace: uberon def: "The flat portion of the stirrup of the ear that fits in the oval window between the middle and inner ear." [http://medical-dictionary.thefreedictionary.com/base+of+stapes] subset: pheno_slim subset: uberon_slim synonym: "base of stapes" EXACT [MA:0002804] synonym: "basis stapedis" EXACT LATIN [] synonym: "footplate" RELATED INCONSISTENT [FMA:52769] synonym: "stapes footpiece" EXACT [] synonym: "stapes footplate" EXACT [MA:0002804] xref: FMA:52769 xref: http://www.snomedbrowser.com/Codes/Details/279685009 xref: MA:0002804 relationship: part_of UBERON:0001687 {source="MA"} ! stapes bone [Term] id: UBERON:0002499 name: cochlear labyrinth namespace: uberon def: "The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [http://en.wikipedia.org/wiki/Cochlear_labyrinth] subset: pheno_slim subset: uberon_slim xref: BTO:0004686 xref: Cochlear:labyrinth xref: EMAPA:36569 xref: FMA:61259 xref: http://linkedlifedata.com/resource/umls/id/C0931689 xref: MA:0002809 xref: NCIT:C32336 xref: UMLS:C0931689 {source="ncithesaurus:Cochlear_Labyrinth"} relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI property_value: IAO:0000116 "we follow the FMA in placing this in the membranous labyrinth. Notes: The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear" xsd:string [Term] id: UBERON:0002505 name: spiral modiolar artery namespace: uberon def: "The artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629] subset: pheno_slim xref: FMA:52312 xref: http://www.snomedbrowser.com/Codes/Details/149380004 xref: MA:0002824 relationship: part_of UBERON:0018231 ! labyrinthine artery [Term] id: UBERON:0002506 name: iris epithelium namespace: uberon def: "An epithelium that is part of a iris [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "epithelial tissue of iris" EXACT [OBOL:automatic] synonym: "epithelium of iris" EXACT [OBOL:automatic] synonym: "epithelium pigmentosum (iris)" EXACT [FMA:58517] synonym: "epithelium pigmentosum iridis" EXACT LATIN [FMA:58517, FMA:TA] synonym: "iris epithelial tissue" EXACT [OBOL:automatic] synonym: "iris epithelium" EXACT [FMA:58517] synonym: "iris pigmented epithelium" RELATED [MA:0002826] synonym: "pigmented epithelium of iris" EXACT [FMA:58517] xref: EMAPA:35447 xref: FMA:58517 xref: MA:0002826 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001769 {source="MA"} ! iris [Term] id: UBERON:0002518 name: otolith organ namespace: uberon def: "the crystalline particles composed of calcium carbonate and a protein which adhere to the gelatinous membrane of the maculae of the utricle and saccule (otolithic membrane)" [ISBN:0-683-40008-8, MGI:llw2, MP:0002894] subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "otolith organs" RELATED [ZFA:0000559] synonym: "saccule and utricle" RELATED [MESH:A09.246.631.909.625] synonym: "utricle and saccule" RELATED [MESH:A09.246.631.909.625] xref: EFO:0003539 xref: GAID:883 xref: MA:0002841 xref: MESH:D012444 xref: Otolith:organ xref: TAO:0000559 xref: VHOG:0001676 xref: ZFA:0000559 is_a: UBERON:0006585 ! vestibular organ relationship: part_of UBERON:0001862 ! vestibular labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI property_value: IAO:0000116 "Representation of utricle, sacule and otoliths in correspondence to other ontologies may require review. In EHDAA2, saccule and utricle are epithelia" xsd:string property_value: UBPROP:0000003 "In fishes, as in other vertebrates, the vestibular end-organs are divided into a gravity receptor system, with three subdivisions and an angular acceleration receptor system. The gravity receptor system on each side consists of utricular, saccular, and lagenar maculae, each covered by an otolith (reference 1); (...)considerations have led to our rethinking issues related to the origin of several aspects of vertebrate hearing, and to the view that many basic auditory functions evolved very early in vertebrate history, and that the functions observed in more `advanced' vertebrates, such as birds and mammals, are frequently modifications of themes first encountered in fishes, and perhaps even more ancestral animals (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001676", ontology="VHOG", source="http://bgee.unil.ch/", source="PMID:11581521 Moorman SJ, Development of sensory systems in zebrafish (Danio rerio). ILAR Journal (2001), DOI:10.1016/S0378-5955(00)00168-4 Fay RR, Popper AN, Evolution of hearing in vertebrates: the inner ears and processing. Hearing research (2000)"} [Term] id: UBERON:0002519 name: otolithic part of statoconial membrane namespace: uberon def: "The layer of the statoconial membrane that is composed of otoliths" [http://www.ncbi.nlm.nih.gov/pubmed/2482728] subset: pheno_slim subset: uberon_slim synonym: "membrana statoconiorum" BROAD LATIN [FMA:75573, FMA:TA] synonym: "otolith layer of statoconial membrane" EXACT [FMA:75573] synonym: "otolithic membrane" BROAD [MA:0002842] xref: FMA:75573 xref: GAID:884 xref: http://www.snomedbrowser.com/Codes/Details/362571006 xref: MA:0002842 xref: MESH:D010037 xref: Otolithic:membrane relationship: part_of UBERON:0016567 ! statoconial membrane [Term] id: UBERON:0002536 name: arthropod sensillum namespace: uberon def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, http://en.wikipedia.org/wiki/Sensillum] subset: efo_slim subset: uberon_slim synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] xref: BTO:0001237 xref: EFO:0000939 xref: FBbt:00007152 xref: HAO:0000933 xref: http://en.wikipedia.org/wiki/Sensillum xref: MAT:0000163 xref: MIAA:0000163 xref: TGMA:0000540 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string [Term] id: UBERON:0002540 name: lateral line system namespace: uberon def: "A line of sensory organs and associated structures along the sides of fish and amphibia that detect vibrations and pressure changes." [http://en.wikipedia.org/wiki/Lateral_line_system, http://orcid.org/0000-0002-6601-2165, ISBN:0471209627, ISBN:0815318960] subset: efo_slim subset: uberon_slim synonym: "lateral line organs" RELATED [VHOG:0001243] synonym: "lateral line stitches" RELATED [] synonym: "lateral-line organs" RELATED [] synonym: "ll" RELATED [] xref: AAO:0000269 xref: AAO:0000975 xref: EFO:0000941 xref: http://en.wikipedia.org/wiki/Lateral_line_system xref: MAT:0000249 xref: MIAA:0000249 xref: TAO:0000034 xref: VHOG:0001243 xref: XAO:0000095 xref: ZFA:0000034 is_a: UBERON:0001032 ! sensory system property_value: IAO:0000116 "we model this as being potentially inclusive of lateral line scales, and thus overlapping with the skeletal system. This is to accomodate TAO" xsd:string property_value: UBPROP:0000001 "A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000034", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "Sensory system which develops from a specialized series of dorsolateral ectodermal placodes named lateral line placodes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000975", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000002 "relationship loss: is_formed_by lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000975", ontology="AAO"} property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001243", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195"} [Term] id: UBERON:0002627 name: capsule of medial geniculate body namespace: uberon synonym: "capsula corporis geniculati medialis" EXACT [BIRNLEX:1214] synonym: "capsule of the medial geniculate body" RELATED [NeuroNames:359] synonym: "medial geniculate body capsule" EXACT [FMA:62049] xref: BAMS:cmg xref: BIRNLEX:1214 xref: FMA:62049 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=359 {source="BIRNLEX:1214"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=359 relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002673 name: vestibular nuclear complex namespace: uberon def: "Nuclear complex containing the vestibular nuclei." [UBERON:cjm] subset: uberon_slim synonym: "nuclei vestibulares" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibular_nuclei] synonym: "nuclei vestibulares in medulla oblongata" EXACT LATIN [FMA:72239, FMA:TA] synonym: "vestibular nuclei" EXACT [FMA:72239] synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239] synonym: "vestibular nucleus" RELATED [GO:0021750] xref: BAMS:Ve xref: BAMS:VNC xref: BIRNLEX:1337 xref: BM:Me-VS xref: BTO:0004368 xref: CALOHA:TS-2078 xref: EV:0100254 xref: FMA:72239 xref: GAID:602 xref: HBA:9697 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=714 {source="BIRNLEX:1337"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=714 xref: http://linkedlifedata.com/resource/umls/id/C0042600 xref: MBA:701 xref: MESH:D014726 xref: UMLS:C0042600 {source="BIRNLEX:1337"} xref: Vestibular:nuclei relationship: part_of UBERON:0004681 {source="Vestibular:nuclei"} ! vestibular system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png xsd:anyURI property_value: IAO:0000116 "In TA they are grouped in both the pons and medulla; DHBA has 'vestibular nuclei of pons', with LVN and SVN underneath; WP+MA says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF." xsd:string [Term] id: UBERON:0002689 name: supraoptic crest namespace: uberon def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [http://en.wikipedia.org/wiki/Organum_vasculosum_of_the_lamina_terminalis, https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NLXANAT:100313] synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] synonym: "OVLT" EXACT ABBREVIATION [BIRNLEX:1400] synonym: "prechiasmatic gland" EXACT [BIRNLEX:1400] synonym: "SoC" BROAD ABBREVIATION [BIRNLEX:1400, NIFSTD:NeuroNames_abbrevSource] synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315] synonym: "vascular organ of the lamina terminalis" RELATED [NeuroNames:383] xref: BAMS:OV xref: BAMS:SoC xref: BAMS:VOLT xref: BIRNLEX:1400 xref: DHBA:12106 xref: DMBA:15582 xref: EMAPA:37742 {source="MA:th"} xref: FMA:62315 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=383 {source="BIRNLEX:1400"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=383 xref: http://en.wikipedia.org/wiki/Organum_vasculosum_of_the_lamina_terminalis xref: http://linkedlifedata.com/resource/umls/id/C0175316 xref: MA:0003018 xref: MBA:763 xref: NLXANAT:100313 xref: UMLS:C0175316 {source="BIRNLEX:1400"} is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ property_value: UBPROP:0000012 "NIF has two classes here; Editor note: consider relationship to lamina terminalis" xsd:string {external_ontology="NIF"} [Term] id: UBERON:0002758 name: dorsal nucleus of medial geniculate body namespace: uberon def: "Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3)" [BIRNLEX:1608] synonym: "DMG" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] synonym: "dorsal medial geniculate nucleus" RELATED [BAMS:MGD] synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] synonym: "dorsal nucleus of the medial geniculate body" RELATED [NeuroNames:356] synonym: "medial geniculate complex dorsal part" RELATED [BAMS:MGd] synonym: "medial geniculate complex, dorsal part" EXACT [BIRNLEX:1608] synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGd] synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGD] synonym: "medial geniculate nucleus, dorsal part" EXACT [BIRNLEX:1608] synonym: "MGD" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [BIRNLEX:1608] synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673] synonym: "nucleus dorsalis corporis geniculati medialis" EXACT LATIN [FMA:62216, FMA:TA] synonym: "nucleus geniculatus medialis fibrosus (hassler)" EXACT [BIRNLEX:1608] synonym: "nucleus geniculatus medialis pars dorsalis" EXACT [BIRNLEX:1608] xref: BAMS:DMG xref: BAMS:MGD xref: BAMS:MGd xref: BIRNLEX:1608 xref: BTO:0002673 xref: DHBA:10435 xref: FMA:62216 xref: HBA:265504828 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=356 {source="BIRNLEX:1608"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=356 xref: MBA:1072 relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002759 name: magnocellular nucleus of medial geniculate body namespace: uberon synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "corpus geniculatus mediale, pars magnocellularis" RELATED LATIN [NeuroNames:358] synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [BIRNLEX:1612] synonym: "magnocellular medial geniculate nucleus" RELATED [BAMS:MGM] synonym: "magnocellular nucleus of medial geniculate complex" RELATED [NeuroNames:358] synonym: "magnocellular nucleus of the medial geniculate body" RELATED [NeuroNames:358] synonym: "medial division of medial geniculate body" EXACT [FMA:62218] synonym: "medial geniculate complex medial part" RELATED [BAMS:MGm] synonym: "medial geniculate complex, medial part" EXACT [FMA:62218] synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGm] synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGM] synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218] synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "MMG" BROAD ABBREVIATION [BIRNLEX:1612, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "nucleus corporis geniculati medialis, pars magnocellularis" RELATED LATIN [NeuroNames:358] synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [BIRNLEX:1612] synonym: "nucleus geniculatus medialis magnocellularis (Hassler)" RELATED LATIN [NeuroNames:358] synonym: "nucleus geniculatus medialis, pars magnocelluaris" EXACT [BIRNLEX:1612] synonym: "nucleus geniculatus medialis, pars magnocellularis" RELATED LATIN [NeuroNames:358] synonym: "nucleus medialis magnocellularis corporis geniculati medialis" RELATED [BTO:0002672] xref: BAMS:MGM xref: BAMS:MGm xref: BAMS:MMG xref: BIRNLEX:1612 xref: BTO:0002672 xref: DHBA:10439 xref: FMA:62218 xref: HBA:4448 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=358 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=358 {source="BIRNLEX:1612"} xref: http://linkedlifedata.com/resource/umls/id/C0175296 xref: MBA:1088 xref: UMLS:C0175296 {source="BIRNLEX:1612"} relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002779 name: lateral superior olivary nucleus namespace: uberon def: "One of two recognized nuclei comprising the superior olive. The lateral superior olivary nucleus is much less prominent in humans than in many rodents and carnivores. In the latter species, it is frequently described as S- or V-shaped." [BIRNLEX:1675] subset: uberon_slim synonym: "accessory olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olive" EXACT [FMA:72472] synonym: "inferior olivary complex dorsalaccessory nucleus" RELATED [BAMS:IOda] synonym: "lateral superior olive" EXACT [FMA:72472] synonym: "LSON" EXACT ABBREVIATION [] synonym: "nucleus olivaris superior lateralis" RELATED LATIN [NeuroNames:571] synonym: "superior olivary complex, lateral part" RELATED [NeuroNames:571] synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472] synonym: "superior olive lateral part" EXACT [] xref: BAMS:IOda xref: BAMS:LSO xref: BIRNLEX:1675 xref: BM:Pons-SOL xref: DHBA:12469 xref: DMBA:17261 xref: FMA:72472 xref: HBA:9183 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=571 {source="BIRNLEX:1675"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=571 xref: http://linkedlifedata.com/resource/umls/id/C0175429 xref: http://www.snomedbrowser.com/Codes/Details/360477003 xref: MBA:114 xref: Olivary:body xref: UMLS:C0175429 {source="BIRNLEX:1675"} is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png xsd:anyURI [Term] id: UBERON:0002782 name: medial superior olivary nucleus namespace: uberon def: "One of two subnuclei of the superior olive located within the caudal pontine tegmentum. Appears as a parasagittal row of transversely oriented bipolar neurons in transverse sections of human, with elongated somata in humans and other primates and large caliber dendrites." [BIRNLEX:1682] subset: defined_by_cytoarchitecture subset: uberon_slim synonym: "chief nucleus of superior olive" EXACT [FMA:72473] synonym: "chief superior olivary nucleus" EXACT [FMA:72473] synonym: "main superior olivary nucleus" EXACT [FMA:72473] synonym: "medial superior olive" EXACT [FMA:72473] synonym: "MSO" RELATED ABBREVIATION [BIRNLEX:1682] synonym: "nucleus laminaris" RELATED [BIRNLEX:1682] synonym: "nucleus olivaris superior medialis" RELATED LATIN [NeuroNames:572] synonym: "principal superior olivary nucleus" EXACT [FMA:72473] synonym: "superior olivary complex, medial part" RELATED [NeuroNames:572] synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473] synonym: "superior olive medial part" EXACT [] synonym: "superior paraolivary nucleus" RELATED [NeuroNames:572] synonym: "superior parolivary nucleus" RELATED [NeuroNames:572] xref: BAMS:MSO xref: BIRNLEX:1682 xref: BM:Pons-SOM xref: DHBA:12470 xref: DMBA:17262 xref: FMA:226223 xref: FMA:72473 xref: HBA:9184 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=572 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=572 {source="BIRNLEX:1682"} xref: http://en.wikipedia.org/wiki/Superior_olivary_complex xref: http://linkedlifedata.com/resource/umls/id/C0175430 xref: MBA:105 xref: UMLS:C0175430 {source="BIRNLEX:1682"} is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png xsd:anyURI [Term] id: UBERON:0002819 name: apex of cochlea namespace: uberon def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [http://en.wikipedia.org/wiki/Apex_of_cochlea] subset: uberon_slim synonym: "apex of cochlear canal" EXACT [BIRNLEX:2555] synonym: "apex of the cochlear canal" EXACT [BIRNLEX:2555] synonym: "cochlea apex" EXACT [FMA:75641] synonym: "cupula of cochlea" EXACT [FMA:75641] synonym: "cupula of the cochlear canal" EXACT [BIRNLEX:2557] xref: BIRNLEX:2523 xref: BIRNLEX:2555 xref: BIRNLEX:2557 xref: FMA:75641 xref: http://en.wikipedia.org/wiki/Apex_of_cochlea xref: http://linkedlifedata.com/resource/umls/id/C0458764 xref: http://linkedlifedata.com/resource/umls/id/C0458765 xref: http://linkedlifedata.com/resource/umls/id/C1184827 xref: http://www.snomedbrowser.com/Codes/Details/279776002 xref: http://www.snomedbrowser.com/Codes/Details/279777006 xref: UMLS:C0458764 {source="BIRNLEX:2557"} xref: UMLS:C0458765 {source="BIRNLEX:2555"} xref: UMLS:C1184827 {source="BIRNLEX:2523"} relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0002820 name: zona arcuata of basilar membrane of cochlea namespace: uberon alt_id: UBERON:0002821 alt_id: UBERON:0031464 def: "The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti." [http://en.wikipedia.org/wiki/Inner_tunnel, https://github.com/obophenotype/uberon/issues/1357] synonym: "arcuate zone of basilar membrane" EXACT [] synonym: "arcuate zone of organ of corti" EXACT [] synonym: "basilar membrane of cochlea, zona arcuata" EXACT [] synonym: "inner tunnel" BROAD [http://en.wikipedia.org/wiki/Inner_tunnel] synonym: "zona arcuata" BROAD [http://en.wikipedia.org/wiki/Inner_tunnel] xref: BIRNLEX:2528 xref: FMA:75709 xref: http://linkedlifedata.com/resource/umls/id/C1184862 xref: http://www.snomedbrowser.com/Codes/Details/368961005 xref: Inner:tunnel xref: UMLS:C1184862 {source="BIRNLEX:2528"} is_a: UBERON:0036250 ! zone of basilar membrane of cochlea [Term] id: UBERON:0002822 name: macula lutea proper namespace: uberon def: "The part of the macula lutea that excludes the fovea." [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2542 xref: FMA:58671 xref: http://linkedlifedata.com/resource/umls/id/C0934637 xref: UMLS:C0934637 {source="BIRNLEX:2542"} relationship: part_of UBERON:0000053 ! macula lutea property_value: IAO:0000116 "consider obsoletion" xsd:string [Term] id: UBERON:0002823 name: clivus of fovea centralis namespace: uberon comment: NIF differs from FMA synonym: "clivus of macula lutea" EXACT [BIRNLEX:2544] synonym: "fovea centralis clivus" EXACT [FMA:58674] xref: BIRNLEX:2544 xref: FMA:58674 xref: http://linkedlifedata.com/resource/umls/id/C0929757 xref: http://linkedlifedata.com/resource/umls/id/C0929760 xref: UMLS:C0929757 {source="BIRNLEX:2544"} xref: UMLS:C0929760 {source="BIRNLEX:2544"} is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001786 ! fovea centralis [Term] id: UBERON:0002824 name: vestibular ganglion namespace: uberon def: "The ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. Distributed to the maculae of the utricle and saccule and to the ampullary crests of the semicircular ducts. The vestibular fibers arise in bipolar cells in the vestibular ganglion in the internal acoustic meatus." [http://en.wikipedia.org/wiki/Scarpa%27s_ganglion, http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html] subset: pheno_slim subset: uberon_slim synonym: "nucleus nervi oculomotorii, pars medialis" RELATED LATIN [NeuroNames:495] synonym: "Scarpa's ganglion" EXACT [FMA:53435] synonym: "vestibular part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "vestibulocochlear ganglion vestibular component" RELATED [EMAPA:17573] synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086] xref: BAMS:GvVIII xref: BIRNLEX:2549 xref: EMAPA:17573 xref: FMA:53435 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=495 {source="BIRNLEX:2549"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=495 xref: http://linkedlifedata.com/resource/umls/id/C0036286 xref: http://linkedlifedata.com/resource/umls/id/C0446706 xref: http://www.snomedbrowser.com/Codes/Details/244450009 xref: MA:0001086 xref: NCIT:C33870 xref: RETIRED_EHDAA2:0002199 xref: Scarpa%27s:ganglion xref: UMLS:C0036286 {source="BIRNLEX:2549"} xref: UMLS:C0036286 {source="ncithesaurus:Vestibular_Ganglion"} xref: UMLS:C0446706 {source="BIRNLEX:2549"} xref: VHOG:0000682 is_a: UBERON:0006585 ! vestibular organ relationship: part_of UBERON:0001862 ! vestibular labyrinth relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion [Term] id: UBERON:0002825 name: superior part of vestibular ganglion namespace: uberon def: "The part of the vestibular ganglion that receives fibers from the maculae of the utricle and the sacculae and the ampullae of the anterior and lateral semicircular ducts." [ISBN:0-683-40008-8, MP:0000028] subset: pheno_slim synonym: "pars superior ganglionis vestibularis" EXACT LATIN [FMA:77531, FMA:TA] synonym: "pars superior vestibularis" RELATED [MA:0002778] synonym: "vestibular ganglion superior part" EXACT [MA:0002778] xref: BIRNLEX:2551 xref: FMA:77531 xref: http://linkedlifedata.com/resource/umls/id/C1186166 xref: MA:0002778 xref: UMLS:C1186166 {source="BIRNLEX:2551"} relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002826 name: inferior part of vestibular ganglion namespace: uberon synonym: "pars inferior ganglionis vestibularis" EXACT LATIN [FMA:77532, FMA:TA] synonym: "vestibular ganglion inferior part" EXACT [MA:0002779] xref: BIRNLEX:2552 xref: FMA:77532 xref: http://linkedlifedata.com/resource/umls/id/C1186167 xref: MA:0002779 xref: UMLS:C1186167 {source="BIRNLEX:2552"} relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] id: UBERON:0002827 name: vestibulocochlear ganglion namespace: uberon def: "the group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia" [MGI:smb, MP:0003703] subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "acoustic ganglion" RELATED [VHOG:0000696] synonym: "acoustic ganglion VIII" EXACT [EMAPA:16982] synonym: "acoustico-vestibular VIII ganglion" EXACT [EHDAA2:0002196] synonym: "auditory ganglion" EXACT [ZFA:0000588] synonym: "auditory ganglion" RELATED [BIRNLEX:2564] synonym: "ganglion VIII" EXACT [] synonym: "gVIII" EXACT [ZFA:0000588] synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED LATIN [NeuroNames:496] synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED LATIN [NeuroNames:496] synonym: "SAG" BROAD [ZFA:0000588] synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588] synonym: "statoacoustic ganglia" EXACT [ZFA:0000588] synonym: "statoacoustic ganglion" EXACT [XAO:0004142] synonym: "statoacoustic VIII ganglion" RELATED [VHOG:0000696] synonym: "vestibulocochlear ganglia" RELATED PLURAL [XAO:0004142] synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084] xref: BIRNLEX:2564 xref: EFO:0003543 xref: EHDAA2:0002196 xref: EHDAA:5569 xref: EHDAA:6653 xref: EMAPA:16982 xref: EMAPA:17571 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=496 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=496 {source="BIRNLEX:2564"} xref: http://linkedlifedata.com/resource/umls/id/C0037959 xref: MA:0001084 xref: TAO:0000588 xref: UMLS:C0037959 {source="BIRNLEX:2564"} xref: VHOG:0000696 xref: XAO:0004142 xref: ZFA:0000588 relationship: part_of UBERON:0002105 {source="ZFA"} ! vestibulo-auditory system property_value: IAO:0000116 "Consider follow MA naming scheme." xsd:string property_value: UBPROP:0000001 "The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000588", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "(During the development of the inner ear in a vertebrate embryo) As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000696", ontology="VHOG", source="http://bgee.unil.ch/", source="PMID:21452441 Park BY, Saint-Jeannet JP, Induction and Segregation of the Vertebrate Cranial Placodes. Developmental Biology (2010)"} property_value: UBPROP:0000013 "The cell bodies of the cochlear nerve lie within the central aspect of the cochlea and are collectively known as the spiral ganglion. This name reflects the fact that the cell bodies, considered as a unit, have a spiral (or perhaps more accurately, a helical) shape, reflecting the shape of the cochlea. The terms 'cochlear nerve fiber' and 'spiral ganglion cell' are used, to some degree, interchangeably, although the former may be used to more specifically refer to the central axons of the cochlear nerve. These central axons exit the cochlea at its base, where it forms a nerve trunk. In humans, this aspect of the nerve is roughly one inch in length. It projects centrally to the brainstem, where its fibers synapse with the cell bodies of the cochlear nucleus" xsd:string {source="Cochlear:nerve"} [Term] id: UBERON:0002832 name: ventral nucleus of trapezoid body namespace: uberon def: "A small nucleus of the periolivary complex located laterally to the MNTB, and ventral to the MSO." [http://en.wikipedia.org/wiki/Superior_olivary_complex#Ventral_nucleus_of_the_trapezoid_body_.28VNTB.29] synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] synonym: "nucleus anterior corporis trapezoidei" EXACT LATIN [FMA:72477, FMA:TA] synonym: "nucleus ventralis corporis trapezoidei" EXACT LATIN [NeuroNames:1283] synonym: "ventral trapezoid nucleus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "VNTB" EXACT ABBREVIATION [] xref: BIRNLEX:2576 xref: DHBA:12461 xref: FMA:72477 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1283 xref: http://linkedlifedata.com/resource/umls/id/C0228437 xref: http://linkedlifedata.com/resource/umls/id/C1289449 xref: http://www.snomedbrowser.com/Codes/Details/369020000 xref: UMLS:C0228437 {source="BIRNLEX:2576"} xref: UMLS:C1289449 {source="BIRNLEX:2576"} is_a: UBERON:0007633 ! nucleus of trapezoid body relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus [Term] id: UBERON:0002833 name: medial nucleus of trapezoid body namespace: uberon def: "Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. It is not clear whether a well defined nucleus is present in humans, although humans may possess scattered cells with similar input." [BIRNLEX:2595] synonym: "MNTB" EXACT ABBREVIATION [] xref: BIRNLEX:2595 xref: DHBA:12460 xref: FMA:75732 is_a: UBERON:0007633 ! nucleus of trapezoid body relationship: part_of UBERON:0022434 {source="Wikipedia"} ! primary superior olive [Term] id: UBERON:0002971 name: periolivary nucleus namespace: uberon def: "A nucleus of the superior olivary complex that surrounds the primary superior olivary nuclei" [http://en.wikipedia.org/wiki/Superior_olivary_complex#Periolivary_nuclei] synonym: "nuclei periolivares" EXACT LATIN [FMA:72475, FMA:TA] synonym: "nucleus periolivaris" RELATED LATIN [NeuroNames:574] synonym: "peri-olivary nuclei" EXACT [FMA:72475] synonym: "peri-olivary nucleus" EXACT [] synonym: "periolivary nuclei" RELATED [BAMS:POR] synonym: "periolivary region" RELATED [BAMS:POR] synonym: "POI" RELATED ABBREVIATION [DHBA:12464] synonym: "superior olivary complex periolivary region" RELATED [BAMS:POR] xref: BAMS:PeO xref: BAMS:POR xref: BIRNLEX:804 xref: DHBA:12464 xref: EMAPA:35680 xref: HBA:9179 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=574 {source="BIRNLEX:804"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=574 xref: http://linkedlifedata.com/resource/umls/id/C0175432 xref: MA:0002757 xref: MBA:122 xref: UMLS:C0175432 {source="BIRNLEX:804"} is_a: UBERON:0007247 ! nucleus of superior olivary complex [Term] id: UBERON:0002976 name: preolivary nucleus namespace: uberon synonym: "nucleus preolivaris" RELATED LATIN [NeuroNames:573] synonym: "preolivary nuclei" EXACT [FMA:72474] xref: BAMS:PrO xref: BIRNLEX:814 xref: DHBA:266441709 xref: FMA:72474 xref: HBA:9180 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=573 {source="BIRNLEX:814"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=573 xref: http://linkedlifedata.com/resource/umls/id/C0175431 xref: UMLS:C0175431 {source="BIRNLEX:814"} is_a: UBERON:0007247 ! nucleus of superior olivary complex [Term] id: UBERON:0002985 name: ventral nucleus of medial geniculate body namespace: uberon def: "Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16)." [BIRNLEX:845] synonym: "medial geniculate complex ventral part" RELATED [BAMS:MGv] synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] synonym: "medial geniculate nucleus ventral part" RELATED [BAMS:MGv] synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217] synonym: "medial nucleus of medial geniculate complex" EXACT [BIRNLEX:845] synonym: "MGV" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [BIRNLEX:845] synonym: "nucleus geniculatus medialis fasciculosis (Hassler)" EXACT LATIN [FMA:62217, FMA:TA] synonym: "nucleus geniculatus medialis fasciculosus (Hassler)" EXACT [BIRNLEX:845] synonym: "nucleus geniculatus medialis pars ventralis" EXACT [BIRNLEX:845] synonym: "nucleus ventralis corporis geniculati medialis" EXACT LATIN [FMA:62217, FMA:TA] synonym: "ventral nucleus" RELATED [NeuroNames:357] synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217] synonym: "ventral nucleus of the medial geniculate body" RELATED [NeuroNames:357] synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217] synonym: "VMG" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:MGV xref: BAMS:MGv xref: BAMS:VMG xref: BIRNLEX:845 xref: BM:Die-Th-MG-MGv xref: BTO:0002671 xref: DHBA:10438 xref: FMA:62217 xref: HBA:4445 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=357 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=357 {source="BIRNLEX:845"} xref: http://linkedlifedata.com/resource/umls/id/C0175295 xref: MBA:1079 xref: UMLS:C0175295 {source="BIRNLEX:845"} relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0003065 name: ciliary marginal zone namespace: uberon def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005]" [ZFIN:curator] subset: efo_slim subset: uberon_slim synonym: "circumferential germinal zone" RELATED [] synonym: "CMZ" RELATED [] synonym: "peripheral growth zone" EXACT [ZFA:0001289] synonym: "retinal ciliary marginal zone" EXACT [ZFA:0001289] synonym: "retinal proliferative zone" RELATED [ZFA:0001289] xref: AAO:0010342 xref: EFO:0003668 xref: TAO:0001289 xref: VHOG:0000088 xref: XAO:0000086 xref: ZFA:0001289 relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000001 "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001289", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The retina of all vertebrates develops via similar mechanisms. Toward the end of retinal histogenesis, proliferating progenitors and newly generated cells are confined to peripheral regions of the retina. In fish and amphibians, this region is maintained after embryonic development and becomes the CMZ (ciliary margin zone). A CMZ exists in birds but compared to that of fish and amphibians this region produces much less new retina as the globe of the eye expands postnatally. At least some of the molecular mechanisms that regulate the addition of new cells in this zone appear to have been conserved from fish to birds.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000088", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1159/000057571 Reh TA, Fischer AJ, Stem cells in the vertebrate retina. Brain Behav Evol (2001)"} [Term] id: UBERON:0003069 name: otic placode namespace: uberon def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII[NBK]" [http://en.wikipedia.org/wiki/Otic_placode, NCBIBook:NBK53175] subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "auditory placode" RELATED [] synonym: "ear placode" RELATED [] synonym: "ear/otic placode" RELATED [] synonym: "octaval placode" RELATED [ISBN:0471888893] synonym: "octaval VIII placode" RELATED [ISBN:0471888893] synonym: "placoda otica" EXACT LATIN [] xref: AAO:0011079 xref: EFO:0003429 xref: EHDAA2:0001339 xref: EHDAA:506 xref: EMAPA:16195 xref: FMA:293973 xref: http://linkedlifedata.com/resource/umls/id/C1518677 xref: NCIT:C34239 xref: Otic:placode xref: TAO:0000138 xref: UMLS:C1518677 {source="ncithesaurus:Otic_Placodes"} xref: VHOG:0000235 xref: XAO:0000223 xref: ZFA:0000138 relationship: part_of UBERON:0001690 ! ear property_value: UBPROP:0000001 "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000138", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (2) neurogenic placodes (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000235", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43"} property_value: UBPROP:0000011 "With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991)." xsd:string {source="NCBIBook:NBK53175"} [Term] id: UBERON:0003090 name: supraorbital lateral line namespace: uberon def: "The lateral line that is located above the eye." [ISBN:0471888893, VHOG:0000128] subset: uberon_slim synonym: "supraorbital lateral lines" RELATED PLURAL [ZFA:0000443] synonym: "supraorbital line" EXACT [ZFA:0000443] xref: AAO:0011103 xref: TAO:0000443 xref: VHOG:0000128 xref: XAO:0000442 xref: ZFA:0000443 is_a: UBERON:2001470 ! anterior lateral line property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000443", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The lateral line that is located above the eye. [Butler_AB_and_Hodos_W, Comparative_vertebrate_neuroanatomy:_Evolution_and_Adaptation_(1996)_New_York:_Wiley-Liss_Inc., p.27][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000128", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000128", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195"} [Term] id: UBERON:0003093 name: occipital lateral line namespace: uberon subset: uberon_slim synonym: "supratemporal lateral line" RELATED [] xref: AAO:0011075 xref: TAO:0000400 xref: VHOG:0000131 xref: XAO:0000458 xref: ZFA:0000400 is_a: UBERON:2001470 ! anterior lateral line property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000400", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000131", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195"} [Term] id: UBERON:0003094 name: infraorbital lateral line namespace: uberon def: "The lateral line that is located below the eye." [ISBN:0471888893, VHOG:0000132] subset: uberon_slim synonym: "infraorbital line" EXACT [ZFA:0000524] xref: AAO:0011053 xref: TAO:0000524 xref: VHOG:0000132 xref: XAO:0000459 xref: ZFA:0000524 is_a: UBERON:2001470 ! anterior lateral line property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000524", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000001 "The lateral line that is located below the eye. [Butler_AB_and_Hodos_W, Comparative_vertebrate_neuroanatomy:_Evolution_and_Adaptation_(1996)_New_York:_Wiley-Liss_Inc., p.27][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000132", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000132", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195"} [Term] id: UBERON:0003095 name: dorsal lateral line namespace: uberon def: "A lateral line that is located in the dorsal part of the organism." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "dorsal lateral lines" RELATED PLURAL [ZFA:0005112] xref: AAO:0011030 xref: TAO:0005112 xref: VHOG:0001677 xref: XAO:0000462 xref: ZFA:0005112 is_a: UBERON:0010202 ! lateral line property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005112", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005112", ontology="TAO"} property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001677", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195"} [Term] id: UBERON:0003096 name: middle lateral line namespace: uberon subset: uberon_slim synonym: "middle lateral lines" RELATED PLURAL [ZFA:0000344] xref: TAO:0000344 xref: VHOG:0000133 xref: XAO:0000463 xref: ZFA:0000344 is_a: UBERON:2001470 ! anterior lateral line property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000344", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from middle lateral line primordium (TAO:0005118)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000344", ontology="TAO"} property_value: UBPROP:0000002 "relationship loss: part_of middle lateral line system (TAO:0005114)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000344", ontology="TAO"} property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000133", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195"} [Term] id: UBERON:0003161 name: dorsal ocellus namespace: uberon def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, http://en.wikipedia.org/wiki/Ocellus#Ocelli] synonym: "dorsal ocelli" RELATED PLURAL [] synonym: "ocelli" RELATED PLURAL [] synonym: "ocellus" EXACT [] xref: BTO:0001758 xref: FBbt:00004505 xref: HAO:0000661 xref: Ocelli is_a: UBERON:0000963 ! head sensillum [Term] id: UBERON:0003162 name: lateral ocellus namespace: uberon def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, http://en.wikipedia.org/wiki/Ocellus#Ocelli] xref: FBbt:00004506 xref: HAO:0000481 xref: Ocelli is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003211 name: median eye namespace: uberon def: "A median eye is an eye that is connected to a paired or unpaired median anterior neuropil of the syncerebrum by one or several median eye nerves." [http://www.ncbi.nlm.nih.gov/pubmed/21062451] synonym: "frontal ocellus" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21062451] synonym: "medial ocellus" EXACT [FBbt:00004507] synonym: "median ocellus" EXACT [HAO:0000526] xref: FBbt:00004507 xref: HAO:0000526 xref: Ocelli is_a: UBERON:0000970 ! eye [Term] id: UBERON:0003212 name: gustatory organ namespace: uberon def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition] synonym: "gustatory organ system organ" EXACT [OBOL:automatic] synonym: "gustatory system organ" EXACT [OBOL:automatic] synonym: "organ of gustatory organ system" EXACT [OBOL:automatic] synonym: "organ of gustatory system" EXACT [OBOL:automatic] synonym: "organ of taste system" EXACT [OBOL:automatic] synonym: "taste organ" EXACT [] synonym: "taste system organ" EXACT [OBOL:automatic] xref: FBbt:00005159 xref: FMA:77853 is_a: UBERON:0000005 ! chemosensory organ [Term] id: UBERON:0003238 name: epithelium of superior semicircular canal namespace: uberon def: "An epithelium that is part of an anterior semicircular canal [Automatically generated definition]." [OBOL:automatic] synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic] synonym: "epithelial tissue of superior semicircular canal" EXACT [OBOL:automatic] synonym: "epithelium of anterior semicircular canal" EXACT [OBOL:automatic] synonym: "superior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "superior semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7806 xref: EMAPA:17301 xref: RETIRED_EHDAA2:0001961 xref: VHOG:0001039 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001841 ! anterior semicircular canal [Term] id: UBERON:0003239 name: epithelium of posterior semicircular canal namespace: uberon def: "An epithelium that is part of a posterior semicircular canal [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7800 xref: EMAPA:17298 xref: RETIRED_EHDAA2:0001491 xref: VHOG:0000758 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: UBERON:0003240 name: epithelium of lateral semicircular canal namespace: uberon def: "An epithelium that is part of a lateral semicircular canal [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic] synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:7794 xref: EMAPA:17823 xref: RETIRED_EHDAA2:0000922 xref: VHOG:0000480 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001843 ! lateral semicircular canal [Term] id: UBERON:0003241 name: epithelium of utricle namespace: uberon def: "An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic] synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of utricle of membranous labyrinth" NARROW [FMA:75604] synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic] synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle epithelium" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4730 xref: EMAPA:17295 xref: EMAPA:17298 xref: EMAPA:17301 xref: EMAPA:17820 xref: EMAPA:17823 xref: FMA:75604 xref: MA:0001204 xref: RETIRED_EHDAA2:0002155 xref: VHOG:0000634 is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium relationship: part_of UBERON:0002214 {source="FMA"} ! macula of utricle of membranous labyrinth property_value: IAO:0000116 "TODO - check relationships w.r.t macula" xsd:string [Term] id: UBERON:0003242 name: epithelium of saccule namespace: uberon def: "An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic] synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "epithelium of macula of saccule of membranous labyrinth" RELATED [FMA:75605] synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic] synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule epithelium" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic] synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic] xref: EHDAA:4724 xref: EMAPA:17292 xref: FMA:75605 xref: MA:0001202 xref: RETIRED_EHDAA2:0001771 xref: VHOG:0000633 is_a: UBERON:0006932 ! vestibular epithelium relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: IAO:0000116 "TODO - check relationships w.r.t macula" xsd:string [Term] id: UBERON:0003243 name: epithelium of cochlear duct namespace: uberon def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Automatically generated definition]." [OBOL:automatic] synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic] synonym: "cochlear duct epithelium" EXACT [OBOL:automatic] synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic] synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic] synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic] synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic] synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic] synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic] synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic] xref: EHDAA:4722 xref: EMAPA:17600 xref: RETIRED_EHDAA2:0000264 xref: VHOG:0000640 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0003246 name: epithelium of endolymphatic sac namespace: uberon def: "An epithelium that is part of a endolymphatic sac [Automatically generated definition]." [OBOL:automatic] synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic] xref: EHDAA:7765 xref: EMAPA:17595 xref: RETIRED_EHDAA2:0000443 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0002223 ! endolymphatic sac property_value: IAO:0000116 "See https://github.com/obophenotype/uberon/issues/1305" xsd:string [Term] id: UBERON:0003249 name: epithelium of otic placode namespace: uberon def: "An epithelium that is part of a otic placode [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic] synonym: "otic epithelium" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic] synonym: "otic placode epithelium" EXACT [OBOL:automatic] xref: EHDAA2:0001341 xref: EHDAA:510 xref: EMAPA:16197 xref: VHOG:0000636 xref: ZFA:0007068 is_a: UBERON:0015807 ! ear epithelium relationship: part_of UBERON:0003069 ! otic placode property_value: IAO:0000116 "check ZFA, placemeant, appears to refer to both adult structures and primordium" xsd:string [Term] id: UBERON:0003269 name: skeletal muscle tissue of eye namespace: uberon def: "A portion of skeletal muscle tissue that is part of a eye [Automatically generated definition]." [OBOL:automatic] synonym: "eye skeletal muscle" EXACT [OBOL:automatic] synonym: "eye skeletal muscle group" RELATED [EHDAA2:0000486] synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic] synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic] xref: EHDAA2:0000486 xref: EHDAA:2923 xref: EMAPA:17844 relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003314 name: eye mesenchyme namespace: uberon def: "Mesenchyme that is part of a developing camera-type eye." [OBOL:automatic] synonym: "mesenchyme of eye" EXACT [OBOL:automatic] xref: EHDAA2:0000485 xref: EHDAA:2910 xref: EMAPA:16673 xref: VHOG:0001084 relationship: part_of UBERON:0000019 ! camera-type eye property_value: IAO:0000116 "TODO - change mesenchyme relationships to precursor_of" xsd:string [Term] id: UBERON:0003325 name: mesenchyme of pinna namespace: uberon def: "Mesenchyme that is part of a developing pinna [Automatically generated definition]." [OBOL:automatic] synonym: "auricle mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic] synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic] synonym: "auricula (auris externa) mesenchyme" EXACT [OBOL:automatic] synonym: "auricula mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle of ear" EXACT [OBOL:automatic] synonym: "mesenchyme of auricle of external ear" EXACT [OBOL:automatic] synonym: "mesenchyme of auricula" EXACT [OBOL:automatic] synonym: "mesenchyme of auricula (auris externa)" EXACT [OBOL:automatic] synonym: "mesenchyme of pinna of ear" EXACT [OBOL:automatic] synonym: "pinna mesenchyme" EXACT [OBOL:automatic] synonym: "pinna of ear mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0001469 xref: EHDAA:8981 xref: EMAPA:17591 xref: VHOG:0000747 relationship: part_of UBERON:0001757 ! pinna property_value: UBPROP:0000012 "EMAPA divides this spatially into condensation + rest, and temporally into mesenchyme and cartilage condensation" xsd:string {external_ontology="EMAPA"} [Term] id: UBERON:0003356 name: epithelium of nasal septum namespace: uberon def: "An epithelium that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal septum epithelium" EXACT [OBOL:automatic] xref: EMAPA:18442 is_a: UBERON:0019306 ! nose epithelium relationship: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003357 name: epithelium of tongue namespace: uberon def: "An epithelium that is part of a tongue [Automatically generated definition]." [OBOL:automatic] comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies. subset: pheno_slim synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic] synonym: "lingual epithelium" RELATED [BTO:0000992] synonym: "tongue epithelial tissue" EXACT [OBOL:automatic] synonym: "tongue epithelium" EXACT [OBOL:automatic] xref: BTO:0000992 xref: CALOHA:TS-1051 xref: EHDAA2:0004598 xref: EMAPA:17881 xref: FMA:284658 xref: http://linkedlifedata.com/resource/umls/id/C1710436 xref: MA:0001592 xref: NCIT:C49300 xref: UMLS:C1710436 {source="ncithesaurus:Tongue_Epithelium"} is_a: UBERON:0019304 ! sensory organ epithelium relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003362 name: epithelium of endolymphatic duct namespace: uberon def: "An epithelium that is part of a endolymphatic duct [Automatically generated definition]." [OBOL:automatic] synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic] synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic] xref: EMAPA:18582 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001860 ! endolymphatic duct [Term] id: UBERON:0003363 name: epithelium of ductus reuniens namespace: uberon def: "An epithelium that is part of a ductus reuniens [Automatically generated definition]." [OBOL:automatic] synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic] synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic] synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic] xref: EMAPA:17289 is_a: UBERON:0006932 ! vestibular epithelium relationship: part_of UBERON:0001861 ! ductus reuniens [Term] id: UBERON:0003367 name: epithelium of vomeronasal organ namespace: uberon def: "An epithelium that is part of a vomeronasal organ [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic] synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic] synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic] synonym: "Jacobson's organ epithelial tissue" EXACT [OBOL:automatic] synonym: "Jacobson's organ epithelium" EXACT [OBOL:automatic] synonym: "vomeronasal epithelium" EXACT [EHDAA2:0004102] synonym: "vomeronasal organ epithelial tissue" EXACT [OBOL:automatic] synonym: "vomeronasal organ epithelium" EXACT [OBOL:automatic] synonym: "vomeronasal organ sensory epithelium" EXACT [MA:0001328] xref: EHDAA2:0004102 xref: EMAPA:18444 xref: FMA:301283 xref: MA:0001328 is_a: UBERON:0019306 ! nose epithelium relationship: part_of UBERON:0002255 ! vomeronasal organ property_value: IAO:0000116 "TODO - add cell types" xsd:string [Term] id: UBERON:0003386 name: smooth muscle of eye namespace: uberon def: "any of the striated muscles that move the eye and include: superior rectus, inferior rectus, medial rectus, lateral rectus, superior oblique, inferior oblique, retractor bulbi" [MGI:cwg, MP:0005247] subset: pheno_slim synonym: "ocular smooth muscle" EXACT [MA:0001268] xref: EMAPA:18807 xref: MA:0001268 relationship: part_of UBERON:0000019 ! camera-type eye property_value: IAO:0000116 "Not clear if we need this and intra-ocular muscle. See issue #331. MA includes ciliary and iris smooth muscle" xsd:string [Term] id: UBERON:0003407 name: cartilage of nasal septum namespace: uberon def: "A cartilage that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "cartilago septal nasi" EXACT [FMA:59503] synonym: "nasal septum cartilage" EXACT [OBOL:automatic] synonym: "septal nasal cartilage" EXACT [FMA:59503] xref: EMAPA:25091 xref: FMA:59503 xref: MA:0003138 is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003409 name: gland of tongue namespace: uberon def: "Any of the mucous, serous, or mixed glands that empty their secretions onto the surface of the tongue." [http://www.merriam-webster.com/medical/lingual%20gland] synonym: "lingual gland" EXACT [OBOL:automatic] synonym: "tongue gland" EXACT [OBOL:automatic] xref: EMAPA:25097 relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003415 name: mesenchyme of nasal septum namespace: uberon def: "Mesenchyme that is part of a developing nasal septum [Automatically generated definition]." [OBOL:automatic] synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18443 xref: FMA:312700 relationship: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003416 name: mesenchyme of tongue namespace: uberon def: "Mesenchyme that is part of a developing tongue [Automatically generated definition]." [OBOL:automatic] synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614] xref: EHDAA2:0004614 xref: EMAPA:17882 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 ! tongue property_value: IAO:0000116 "TODO - develops_from" xsd:string [Term] id: UBERON:0003421 name: mesenchyme of vomeronasal organ namespace: uberon def: "Mesenchyme that is part of a developing vomeronasal organ [Automatically generated definition]." [OBOL:automatic] synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic] synonym: "vomeronasal mesenchyme" EXACT [EHDAA2:0004103] synonym: "vomeronasal organ mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0004103 xref: EMAPA:18445 relationship: part_of UBERON:0002255 {source="EHDAA2"} ! vomeronasal organ [Term] id: UBERON:0003484 name: eye sebaceous gland namespace: uberon def: "A sebaceous gland that is part of a camera-type eye. Example: a tarsal gland." [http://orcid.org/0000-0002-6601-2165] subset: organ_slim synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic] synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic] synonym: "sebaceous gland of vertebrate eye" EXACT [OBOL:automatic] synonym: "vertebrate eye sebaceous gland" EXACT [OBOL:automatic] xref: EMAPA:37531 {source="MA:th"} xref: MA:0002452 is_a: UBERON:0003605 ! eye skin gland [Term] id: UBERON:0003500 name: corneal blood vessel namespace: uberon def: "A blood vessel that is part of a cornea [Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/index.php?func=detail&aid=3564332&group_id=36855&atid=440764] synonym: "blood vessel of cornea" EXACT [OBOL:automatic] synonym: "cornea blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36611 xref: MA:0001241 relationship: part_of UBERON:0000964 ! cornea property_value: IAO:0000116 "follow up on tracker item" xsd:string property_value: RO:0002175 NCBITaxon:9775 {source="http://www.ncbi.nlm.nih.gov/pubmed/17051153"} [Term] id: UBERON:0003501 name: retina blood vessel namespace: uberon def: "A blood vessel that is part of a retina [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic] synonym: "blood vessel of retina" EXACT [OBOL:automatic] synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic] synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic] synonym: "retinal blood vessel" EXACT [OBOL:automatic] synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36520 xref: GAID:509 xref: http://www.snomedbrowser.com/Codes/Details/280692003 xref: MA:0001317 xref: MESH:D012171 xref: XAO:0004153 relationship: part_of UBERON:0004864 ! vasculature of retina [Term] id: UBERON:0003510 name: eyelid blood vessel namespace: uberon def: "A blood vessel that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "blepharon blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of blepharon" EXACT [OBOL:automatic] synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] xref: EMAPA:37388 {source="MA:th"} xref: MA:0001250 relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003511 name: iris blood vessel namespace: uberon def: "A blood vessel that is part of a iris [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "blood vessel of iris" EXACT [OBOL:automatic] xref: EMAPA:37387 {source="MA:th"} xref: MA:0001290 xref: ZFA:0005568 relationship: part_of UBERON:0004118 ! vasculature of iris [Term] id: UBERON:0003581 name: eyelid connective tissue namespace: uberon def: "A portion of connective tissue that is part of a eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "blepharon connective tissue" EXACT [OBOL:automatic] synonym: "connective tissue of blepharon" EXACT [OBOL:automatic] synonym: "connective tissue of eyelid" EXACT [OBOL:automatic] xref: EMAPA:37532 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1707989 xref: MA:0001251 xref: NCIT:C49482 xref: UMLS:C1707989 {source="ncithesaurus:Eyelid_Connective_Tissue"} relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003605 name: eye skin gland namespace: uberon def: "A skin gland that is part of a camera-type eye [Automatically generated definition]." [OBOL:automatic] subset: organ_slim synonym: "camera-type eye skin gland" EXACT [OBOL:automatic] synonym: "camera-type eye skin glands" EXACT [OBOL:automatic] synonym: "camera-type eye skin glands set" EXACT [OBOL:automatic] synonym: "skin gland of camera-type eye" EXACT [OBOL:automatic] synonym: "skin gland of vertebrate eye" EXACT [OBOL:automatic] synonym: "skin glands of camera-type eye" EXACT [OBOL:automatic] synonym: "skin glands of vertebrate eye" EXACT [OBOL:automatic] synonym: "skin glands set of camera-type eye" EXACT [OBOL:automatic] synonym: "skin glands set of vertebrate eye" EXACT [OBOL:automatic] synonym: "vertebrate eye skin gland" EXACT [OBOL:automatic] synonym: "vertebrate eye skin glands" EXACT [OBOL:automatic] synonym: "vertebrate eye skin glands set" EXACT [OBOL:automatic] xref: EMAPA:37530 {source="MA:th"} xref: MA:0002451 is_a: UBERON:0004859 ! eye gland relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003723 name: vestibular nerve namespace: uberon def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vestibular_nerve] subset: pheno_slim synonym: "nervus vestibularis" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibular_nerve] synonym: "scarpa ganglion" RELATED [GAID:840] synonym: "scarpa's ganglion" RELATED [GAID:840] synonym: "scarpas ganglion" RELATED [GAID:840] synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401] synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401] synonym: "vestibulocochlear nerve vestibular root" RELATED [BAMS:vVIIIn] synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111] xref: BAMS:vVIIIn xref: DHBA:12869 xref: EHDAA2:0002200 xref: EHDAA:3749 xref: EMAPA:17803 xref: FMA:53401 xref: GAID:840 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1389 xref: http://linkedlifedata.com/resource/umls/id/C0042598 xref: http://www.snomedbrowser.com/Codes/Details/362464003 xref: MA:0001111 xref: MBA:413 xref: MESH:D014725 xref: NCIT:C12820 xref: OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA xref: UMLS:C0042598 {source="ncithesaurus:Vestibular_Nerve"} xref: Vestibular:nerve xref: VHOG:0001181 relationship: part_of UBERON:0001648 ! vestibulocochlear nerve relationship: part_of UBERON:0004681 ! vestibular system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg xsd:anyURI [Term] id: UBERON:0003844 name: upper eyelid epithelium namespace: uberon def: "An epithelium that is part of an upper eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic] synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic] synonym: "epithelium of upper eyelid" EXACT [OBOL:automatic] synonym: "superior eyelid epithelial tissue" EXACT [OBOL:automatic] synonym: "superior eyelid epithelium" EXACT [OBOL:automatic] synonym: "upper eyelid epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0002116 xref: EMAPA:17835 xref: VHOG:0000638 is_a: UBERON:0035034 ! eyelid epithelium relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0003845 name: lower eyelid epithelium namespace: uberon def: "An epithelium that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic] synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic] synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic] synonym: "epithelium of lower eyelid" EXACT [OBOL:automatic] synonym: "inferior eyelid epithelial tissue" EXACT [OBOL:automatic] synonym: "inferior eyelid epithelium" EXACT [OBOL:automatic] synonym: "lower eyelid epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0001016 xref: EMAPA:17832 xref: VHOG:0000637 is_a: UBERON:0035034 ! eyelid epithelium relationship: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0003857 name: upper eyelid mesenchyme namespace: uberon def: "Mesenchyme that is part of a developing upper eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic] synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic] xref: EHDAA2:0002117 xref: EHDAA:9051 xref: EMAPA:17836 xref: VHOG:0001093 is_a: UBERON:0010330 ! eyelid mesenchyme relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0003858 name: lower eyelid mesenchyme namespace: uberon def: "Mesenchyme that is part of a developing lower eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic] synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic] synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic] xref: EHDAA2:0001017 xref: EHDAA:9045 xref: EMAPA:17833 xref: VHOG:0001036 is_a: UBERON:0010330 ! eyelid mesenchyme relationship: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0003902 name: retinal neural layer namespace: uberon def: "The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407] subset: pheno_slim subset: vertebrate_core synonym: "neural layer of retina" EXACT [FMA:58628] synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046] synonym: "neural retinal epithelium" RELATED [MA:000027] synonym: "neuroretina" EXACT [ZFA:0000046] synonym: "stratum nervosum (retina)" EXACT [FMA:58628] synonym: "stratum nervosum retinae" EXACT LATIN [FMA:58628, FMA:TA] xref: AAO:0011095 xref: BTO:0000929 xref: CALOHA:TS-0685 xref: EHDAA2:0001253 xref: EHDAA:4763 xref: EMAPA:17171 xref: EMAPA:18590 xref: FMA:58628 xref: http://linkedlifedata.com/resource/umls/id/C1518263 xref: MA:0000277 xref: NCIT:C33166 xref: TAO:0000046 xref: UMLS:C1518263 {source="ncithesaurus:Neural_Retina"} xref: VHOG:0000535 xref: XAO:0003216 xref: ZFA:0000046 is_a: UBERON:0001781 ! layer of retina property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000535", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0003925 name: photoreceptor inner segment layer namespace: uberon def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [ZFIN:curator] subset: vertebrate_core synonym: "photoreceptor inner segment layers" RELATED PLURAL [ZFA:0001465] synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471] xref: EMAPA:35687 xref: MA:0002471 xref: TAO:0001465 xref: VHOG:0001172 xref: ZFA:0001465 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001172", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0003926 name: photoreceptor outer segment layer namespace: uberon subset: vertebrate_core synonym: "photoreceptor outer segment layers" RELATED PLURAL [ZFA:0001466] synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472] xref: EMAPA:35688 xref: MA:0002472 xref: TAO:0001466 xref: VHOG:0001173 xref: ZFA:0001466 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001173", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0003942 name: somatic sensory system namespace: uberon alt_id: UBERON:0014511 def: "The sensory system for the sense of touch and pain." [NLXANAT:090818] subset: pheno_slim synonym: "somatic sensory system" EXACT [] synonym: "somatosensory system" EXACT [NLXANAT:090818] synonym: "system for detection of somatic senses" EXACT [] xref: EMAPA:37954 {source="MA:th"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2887 xref: NLXANAT:090818 xref: Somatosensory:system is_a: UBERON:0001032 ! sensory system property_value: UBPROP:0000001 "The neural tissue involved in the transmission of sensory signals" xsd:string {source="MP:0000959"} property_value: UBPROP:0000012 "MP defines this in a may more appropriate to somatosensory cortex" xsd:string {external_ontology="MP"} [Term] id: UBERON:0003950 name: inner ear canal namespace: uberon def: "The tubular ducts of the inner ear" [MP:0002729] subset: pheno_slim xref: EMAPA:37882 {source="MA:th"} is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0003951 name: ocular fundus namespace: uberon def: "The posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope" [http://en.wikipedia.org/wiki/Fundus_(eye), MP:0002864] subset: pheno_slim synonym: "eye fundus" EXACT [] synonym: "fundus" EXACT [HP:0001098] synonym: "fundus oculi" EXACT [] synonym: "fundus of eye" EXACT [] xref: EMAPA:37916 {source="MA:th"} xref: Fundus:(eye) xref: GAID:908 xref: galen:FundusOculi xref: http://linkedlifedata.com/resource/umls/id/C0740422 xref: http://www.snomedbrowser.com/Codes/Details/362519003 xref: MESH:D005654 xref: NCIT:C13378 xref: RETIRED_EHDAA2:0000583 xref: UMLS:C0740422 {source="ncithesaurus:Fundus"} relationship: part_of UBERON:0001802 ! posterior segment of eyeball property_value: IAO:0000116 "TODO - check relationships" xsd:string [Term] id: UBERON:0003952 name: anterior stroma of cornea namespace: uberon def: "The anterior segment of the lamellated connective tissue layer of the cornea" [MP:0003093] subset: pheno_slim synonym: "anterior stroma" BROAD [MP:0003093] synonym: "cornea anterior stroma" EXACT [MP:0003093] xref: EMAPA:37414 {source="MA:th"} relationship: part_of UBERON:0001777 ! substantia propria of cornea [Term] id: UBERON:0003953 name: posterior stroma of cornea namespace: uberon def: "The posterior segment of the lamellated connective tissue layer of the cornea" [MP:0003094] subset: pheno_slim synonym: "cornea posterior stroma" EXACT [MP:0003094] synonym: "posterior stroma" BROAD [MP:0003094] xref: EMAPA:37415 {source="MA:th"} relationship: part_of UBERON:0001777 ! substantia propria of cornea [Term] id: UBERON:0003956 name: aqueous drainage system namespace: uberon def: "The structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [MP:0005198] subset: pheno_slim xref: EMAPA:37427 {source="MA:th"} is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001768 ! uvea [Term] id: UBERON:0003957 name: Bruch's membrane namespace: uberon def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina." [https://github.com/obophenotype/uberon/issues/14, MP:0005239] subset: pheno_slim subset: vertebrate_core synonym: "basal lamina of choroid" RELATED [FMA:58438] synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] synonym: "Bruch's basal membrane" EXACT [FMA:58438] synonym: "lamina basalis (choroid)" EXACT [FMA:58438] synonym: "lamina basilis" BROAD [FMA:58438] synonym: "lamina choroideae basalis" EXACT LATIN [FMA:58438, FMA:TA] synonym: "vitreous lamina" EXACT [ZFA:0005562] xref: Bruch's:membrane xref: EMAPA:37450 {source="MA:th"} xref: FMA:58438 xref: GAID:914 xref: http://www.snomedbrowser.com/Codes/Details/280652000 xref: MESH:D016570 xref: ZFA:0005562 relationship: part_of UBERON:0013399 ! blood vessel layer of choroid property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos property_value: seeAlso https://github.com/obophenotype/uberon/issues/14 xsd:anyURI property_value: UBPROP:0000010 "Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid[WP]" xsd:string property_value: UBPROP:0000011 "Bruch's membrane is present by midterm in fetal development as an elastic sheet." xsd:string [Term] id: UBERON:0003966 name: gonial bone namespace: uberon def: "investing bone that lies on the surface of the malleus." [MP:0008380] subset: pheno_slim synonym: "gonium" EXACT [MP:0008380] xref: EMAPA:37874 {source="MA:th"} relationship: part_of UBERON:0001689 ! malleus bone property_value: IAO:0000116 "To be revisted after a review of auditory ossicles" xsd:string [Term] id: UBERON:0003976 name: saccule duct namespace: uberon def: "The saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct" [MP:0009259] subset: pheno_slim synonym: "saccular duct" EXACT [MP:0009259] synonym: "saccular part of utriculosaccular duct" EXACT [] xref: EMAPA:37982 {source="MA:th"} xref: FMA:77825 xref: http://www.snomedbrowser.com/Codes/Details/279829002 relationship: part_of UBERON:0011774 ! utriculosaccular duct [Term] id: UBERON:0003977 name: utricle duct namespace: uberon def: "The utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct" [MP:0009260] subset: pheno_slim synonym: "utricular duct" EXACT [MP:0009260] synonym: "utricular part of utriculosaccular duct" EXACT [] xref: EMAPA:37981 {source="MA:th"} xref: FMA:77824 xref: http://www.snomedbrowser.com/Codes/Details/279819009 relationship: part_of UBERON:0011774 ! utriculosaccular duct [Term] id: UBERON:0003979 name: utricle valve namespace: uberon def: "The utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals" [MP:0009261] subset: pheno_slim relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0004000 name: tarsal gland acinus namespace: uberon def: "A sac-like structure comprising a sebaceous gland." [MP:0009935] subset: pheno_slim synonym: "acinus of tarsal gland" EXACT [] synonym: "Meibomian gland acinus" EXACT [] synonym: "palpebral gland acinus" RELATED [] xref: EMAPA:37972 {source="MA:th"} relationship: part_of UBERON:0001818 ! tarsal gland [Term] id: UBERON:0004012 name: golgi tendon organ namespace: uberon def: "The sensory organ in muscle that is involved in regulating muscle tension" [MP:0000999] subset: pheno_slim synonym: "neurotendinous ending" EXACT [FMA:83608] synonym: "neurotendinous organ of golgi" EXACT [FMA:83608] xref: EMAPA:37873 {source="MA:th"} xref: FMA:83608 xref: http://en.wikipedia.org/wiki/Golgi_tendon_organ xref: http://linkedlifedata.com/resource/umls/id/C0027929 xref: NCIT:C13826 xref: UMLS:C0027929 {source="ncithesaurus:Golgi_Tendon_Organ"} is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0004019 name: baroreceptor namespace: uberon def: "The sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure" [MP:0004118] comment: WP classifies as mechanoreceptor subset: pheno_slim synonym: "baroceptor" RELATED [http://en.wikipedia.org/wiki/Baroreceptor] synonym: "pressoreceptor" RELATED [http://en.wikipedia.org/wiki/Baroreceptor] synonym: "stretch receptor" RELATED [] synonym: "vascular stretch receptor" RELATED [MESH:A08.800.050.800.900.700] xref: EMAPA:36597 xref: FMA:85601 xref: http://en.wikipedia.org/wiki/Baroreceptor xref: MA:0003009 xref: MESH:D011311 is_a: UBERON:0018389 {source="FMA"} ! interoceptor property_value: seeAlso https://github.com/obophenotype/uberon/issues/510 xsd:anyURI [Term] id: UBERON:0004029 name: canal of Schlemm namespace: uberon def: "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation" [http://en.wikipedia.org/wiki/Schlemm's_canal, MP:0005204] subset: pheno_slim synonym: "Schlemm's canal" EXACT [] synonym: "scleral sinus" EXACT [FMA:51873] synonym: "scleral venous sinus" EXACT [FMA:51873] synonym: "sinus venosus of sclera" EXACT [FMA:51873] synonym: "sinus venosus sclerae" EXACT LATIN [http://en.wikipedia.org/wiki/Schlemm's_canal] xref: EMAPA:37456 {source="MA:th"} xref: FMA:51873 xref: http://linkedlifedata.com/resource/umls/id/C0229108 xref: http://www.snomedbrowser.com/Codes/Details/280605006 xref: NCIT:C32256 xref: Schlemm's:canal xref: UMLS:C0229108 {source="ncithesaurus:Canal_of_Schlemm"} xref: ZFA:0005829 relationship: part_of UBERON:0003956 ! aqueous drainage system [Term] id: UBERON:0004030 name: aqueous vein namespace: uberon def: "A vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)" [MP:0005207] comment: a mixture of episcleral venous blood and aqueous humor mix in this combined channel[http://www.atlasophthalmology.com] subset: pheno_slim xref: EMAPA:37428 {source="MA:th"} relationship: part_of UBERON:0003956 ! aqueous drainage system property_value: depicted:by http://www.atlasophthalmology.com/media/Aqeous+Vein+Prep.m4v xsd:anyURI [Term] id: UBERON:0004043 name: semicircular canal ampulla namespace: uberon def: "The spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals" [http://en.wikipedia.org/wiki/Osseous_ampullae, MP:0008488] subset: pheno_slim synonym: "ampullae osseae" RELATED LATIN [http://en.wikipedia.org/wiki/Osseous_ampullae] synonym: "membraneous ampulla of the semicircular duct" RELATED [MP:0008488] synonym: "semicircular duct ampulla" RELATED [MA:0002770] xref: EMAPA:32831 xref: http://www.snomedbrowser.com/Codes/Details/279759001 xref: MA:0002770 xref: Osseous:ampullae relationship: part_of UBERON:0001856 {source="MA"} ! semicircular duct property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg xsd:anyURI property_value: IAO:0000116 "TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal'" xsd:string [Term] id: UBERON:0004101 name: nasolabial region namespace: uberon def: "." [HP:0005289] subset: pheno_slim relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0004106 name: crus of ear namespace: uberon def: "horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895] subset: pheno_slim synonym: "crus helicis" EXACT LATIN [FMA:61024, FMA:TA] synonym: "crus of helical part of auricular cartilage" EXACT [] synonym: "crus of helix" EXACT [FMA:61024] xref: FMA:61024 xref: http://linkedlifedata.com/resource/umls/id/C0229319 xref: http://www.snomedbrowser.com/Codes/Details/362547004 xref: NCIT:C32410 xref: UMLS:C0229319 {source="ncithesaurus:Crus_Helicis"} is_a: UBERON:0001867 ! cartilage of external ear relationship: part_of UBERON:0001848 ! auricular cartilage [Term] id: UBERON:0004110 name: midnasal cavity namespace: uberon def: "An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]." [HP:0010641] subset: pheno_slim xref: FMA:59675 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0004113 name: muscle of auditory ossicle namespace: uberon alt_id: UBERON:0004112 def: "A muscle of the tympanic cavity that attaches to an auditory ossicle." [http://orcid.org/0000-0002-6601-2165] synonym: "auditory ossicles muscle" EXACT [FMA:49026] synonym: "muscle of auditory ossicles" EXACT [FMA:49026] synonym: "muscle of middle ear" RELATED [] synonym: "muscle of tympanic cavity" EXACT [] synonym: "ossicular muscle" EXACT [FMA:49026] synonym: "tympanic cavity muscle" EXACT [MA:0000256] xref: EMAPA:37776 {source="MA:th"} xref: FMA:49026 xref: http://en.wikipedia.org/wiki/Muscles_of_auditory_ossicles xref: http://linkedlifedata.com/resource/umls/id/C1513769 xref: http://www.snomedbrowser.com/Codes/Details/244778009 xref: MA:0000256 xref: NCIT:C33148 xref: UMLS:C1513769 {source="ncithesaurus:Muscle_of_the_Tympanum"} relationship: part_of UBERON:0001756 ! middle ear property_value: UBPROP:0000009 "attenuate low-frequency sounds, reduce masking of high-frequency sounds by low-frequency sounds, frequency-selection filter" xsd:string [Term] id: UBERON:0004114 name: tympanic cavity namespace: uberon def: "small cavity surrounding the bones of the middle ear." [http://en.wikipedia.org/wiki/Tympanic_cavity] synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "cavitas tympani" EXACT LATIN [http://en.wikipedia.org/wiki/Tympanic_cavity] synonym: "cavitas tympanica" RELATED [BTO:0002098] synonym: "cavity of middle ear" EXACT [OBOL:automatic] synonym: "middle ear cavity" EXACT [OBOL:automatic] synonym: "middle-ear cavity" EXACT [OBOL:automatic] synonym: "tympanum" RELATED [BTO:0002098] xref: BTO:0002098 xref: EHDAA2:0004119 xref: EMAPA:37778 {source="MA:th"} xref: EV:0100358 xref: FMA:56461 xref: http://www.snomedbrowser.com/Codes/Details/362551002 xref: Tympanic:cavity relationship: part_of UBERON:0001756 ! middle ear property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI [Term] id: UBERON:0004115 name: blood vessel of tympanic cavity namespace: uberon def: "A blood vessel that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic] synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic] synonym: "blood vessel of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "blood vessel of middle ear cavity" EXACT [OBOL:automatic] synonym: "cavity of middle ear blood vessel" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity blood vessel" EXACT [OBOL:automatic] synonym: "middle ear blood vessel" EXACT [] synonym: "middle ear cavity blood vessel" EXACT [OBOL:automatic] synonym: "tympanic cavity blood vessel" EXACT [] xref: EMAPA:37775 {source="MA:th"} xref: MA:0001219 relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0004116 name: nerve of tympanic cavity namespace: uberon def: "A nerve that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic] synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic] synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic] synonym: "middle ear cavity nerve" EXACT [OBOL:automatic] synonym: "nerve of anatomical cavity of middle ear" EXACT [OBOL:automatic] synonym: "nerve of cavity of middle ear" EXACT [OBOL:automatic] synonym: "nerve of middle ear anatomical cavity" EXACT [OBOL:automatic] synonym: "nerve of middle ear cavity" EXACT [OBOL:automatic] synonym: "tympanic cavity nerve" EXACT [] synonym: "tympanic cavity nerves" EXACT [MA:0001222] xref: EMAPA:37777 {source="MA:th"} xref: MA:0001222 relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0004118 name: vasculature of iris namespace: uberon def: "A vasculature that is part of a iris [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "iris blood vessels" EXACT [ZFA:0005568] synonym: "iris vascular network" EXACT [OBOL:automatic] synonym: "iris vasculature" EXACT [] synonym: "vascular network of iris" EXACT [OBOL:automatic] xref: ZFA:0005568 is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0004187 name: Harderian gland namespace: uberon def: "The Harderian gland is an anterior orbital gland usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]." [GO:0070384, http://en.wikipedia.org/wiki/Harderian_gland] subset: organ_slim subset: pheno_slim synonym: "deep gland of the nictitating membrane" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/7559104] synonym: "gland of Hardarian" EXACT [] synonym: "glandula palpebra tertia profundus" EXACT LATIN [http://www.ncbi.nlm.nih.gov/pubmed/7559104] synonym: "Hardarian gland" EXACT [] synonym: "Harder's gland" EXACT [] xref: BTO:0000557 xref: EMAPA:19153 xref: GAID:1219 xref: Harderian:gland xref: http://linkedlifedata.com/resource/umls/id/C0018597 xref: http://www.snomedbrowser.com/Codes/Details/41474005 xref: MA:0001247 xref: MESH:D006243 xref: NCIT:C77619 xref: UMLS:C0018597 {source="ncithesaurus:Harderian_Gland"} is_a: UBERON:0004859 ! eye gland relationship: part_of UBERON:0000019 ! camera-type eye property_value: RO:0002175 NCBITaxon:10047 {source="ISBN:1118473523"} property_value: RO:0002175 NCBITaxon:8293 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} property_value: RO:0002175 NCBITaxon:8342 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} property_value: RO:0002175 NCBITaxon:9263 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} property_value: RO:0002175 NCBITaxon:9397 {source="http://www.ncbi.nlm.nih.gov/pubmed/20665821", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} property_value: RO:0002175 NCBITaxon:9608 {source="http://www.ncbi.nlm.nih.gov/pubmed/14803383", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} property_value: RO:0002175 NCBITaxon:9681 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639", source="PMID:6997222 "} property_value: RO:0002175 NCBITaxon:9845 {source="http://www.ncbi.nlm.nih.gov/pubmed/12969024", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"} property_value: UBPROP:0000008 "In mouse the HG appears in the posterior part of eye region, in the form of nonluminated tubules between the sixteenth and eighteenth days of gestation. At birth it is still not differentiated histologically. In birds the HG originates from the conjunctival epithelium at a late embryonic stage. In the English sparrow, Passer domesticus (incubation period of about 13 days), it appears between the seventh and the eighth days of incubation. In the chick embryo (incubation period of about 21 days) it originates between the eleventh and the twelfth days.[PMID:9156609]" xsd:string property_value: UBPROP:0000008 "In the limbless, burrowing amphibian Apoda (Caecilians) the harderian gland is very large, filling much of the orbit and lubricating a retractile sensory tentacle rather than the eye (Walls, 1942; Wolff, 1948)." xsd:string property_value: UBPROP:0000009 "In mammals, the gland excretes an oily substance used to preen the fur[WP]" xsd:string property_value: UBPROP:0000009 "In some animals it acts as an accessory to the lacrimal gland, secreting fluid that eases movement of the nictitating membrane[WP]" xsd:string property_value: UBPROP:0000009 "The functions attributed to the gland are many and diverse. Amongst these, it has been held to be a site of immune responses, a source of thermoregulatory lipids, a source of pheromones, a photoprotective organ and part of a retinal-pineal axis. It is arguably the last remaining large organ of widespread dis- tribution among the vertebrates to which we cannot confidently ascribe a confirmed function." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} property_value: UBPROP:0000010 "The harderian gland may be compound tubular (MacLeod, 1880; Paule, 1957) or compound tubuloacinar/tubuloalveolar (Aureli, 1957; Hoffman, 1971)." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} [Term] id: UBERON:0004234 name: iris smooth muscle namespace: uberon def: "A portion of smooth muscle tissue that is part of a iris [Automatically generated definition]." [OBOL:automatic] synonym: "involuntary muscle of iris" EXACT [OBOL:automatic] synonym: "iridial smooth muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "iris involuntary muscle" EXACT [OBOL:automatic] synonym: "iris non-striated muscle" EXACT [OBOL:automatic] synonym: "iris smooth muscle tissue" EXACT [OBOL:automatic] synonym: "non-striated muscle of iris" EXACT [OBOL:automatic] synonym: "smooth muscle of iris" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of iris" EXACT [OBOL:automatic] xref: BTO:0000655 xref: EMAPA:35448 xref: FMA:312338 xref: MA:0001270 is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye relationship: part_of UBERON:0001606 ! muscle of iris property_value: IAO:0000116 "see notes for muscle of iris." xsd:string [Term] id: UBERON:0004277 name: eye muscle namespace: uberon def: "A muscle that is part of the eye region." [OBOL:automatic] subset: pheno_slim xref: AAO:0000156 xref: EMAPA:35335 xref: MA:0000271 xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycB4rvYA8cJwpEbGdrcN5Y29ycA relationship: part_of UBERON:0000019 {source="MA"} ! camera-type eye [Term] id: UBERON:0004367 name: Descemet's membrane namespace: uberon def: "A transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]." [https://github.com/obophenotype/uberon/issues/15, MP:0004285] comment: The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed) subset: pheno_slim subset: vertebrate_core synonym: "Descemet membrane" EXACT [] synonym: "Descemet's posterior elastic lamina" EXACT [FMA:58309] synonym: "lamina limitans posterior" EXACT [FMA:58309] synonym: "lamina limitans posterior corneae" EXACT LATIN [FMA:58309, FMA:TA] synonym: "posterior limiting lamina" EXACT [MA:0001246] synonym: "posterior limiting lamina of cornea" EXACT [FMA:58309] synonym: "posterior limiting membrane" EXACT [ZFA:0001686] xref: Descemet%27s:membrane xref: EMAPA:18804 xref: FMA:58309 xref: GAID:894 xref: http://linkedlifedata.com/resource/umls/id/C0011665 xref: http://www.snomedbrowser.com/Codes/Details/281076002 xref: MA:0001246 xref: MESH:D003886 xref: NCIT:C32454 xref: TAO:0002157 xref: UMLS:C0011665 {source="ncithesaurus:Descemet_s_Membrane"} xref: ZFA:0001686 relationship: part_of UBERON:0000964 ! cornea property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos property_value: seeAlso https://github.com/obophenotype/uberon/issues/15 xsd:anyURI property_value: UBPROP:0000001 "Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.[ZFIN]" xsd:string {date_retrieved="2016-05-01", external_class="TAO:0002157", ontology="ZFIN", source="ORCiD:0000-0001-9114-8737", source="ZFIN:ZDB-PUB-061010-3"} [Term] id: UBERON:0004370 name: anterior limiting lamina of cornea namespace: uberon def: "A transparent homogeneous acellular layer, 6 to 9 um thick, lying between the basal lamina of the outer layer of stratified epithelium and the substantia propria of the cornea; it is considered to be a basement membrane." [ncithesaurus:Bowman_s_Membrane] subset: pheno_slim subset: vertebrate_core synonym: "anterior elastic lamina" EXACT [ZFA:0001684] synonym: "anterior limiting lamina" EXACT [MA:0001240] synonym: "anterior limiting lamina of cornea" EXACT [FMA:58273] synonym: "anterior limiting membrane" RELATED [ZFA:0001684] synonym: "Bowman's anterior elastic lamina" EXACT [FMA:58273] synonym: "Bowman's layer" EXACT [FMA:58273] synonym: "Bowman's membrane" EXACT [FMA:58273] synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273] synonym: "lamina limitans anterior corneae" EXACT LATIN [FMA:58273, FMA:TA] synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957] xref: Bowman%27s:membrane xref: FMA:58273 xref: http://linkedlifedata.com/resource/umls/id/C0229127 xref: http://www.snomedbrowser.com/Codes/Details/281075003 xref: MA:0001240 xref: NCIT:C32226 xref: TAO:0002155 xref: UMLS:C0229127 {source="ncithesaurus:Bowman_s_Membrane"} xref: ZFA:0001684 relationship: part_of UBERON:0000964 ! cornea property_value: UBPROP:0000001 "Acellular anatomical structure that is the zone of collagen fibers adjacent the basement membrane of the corneal epithelium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002155", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"} property_value: UBPROP:0000008 "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals" xsd:string [Term] id: UBERON:0004456 name: entire sense organ system namespace: uberon def: "Sum of all sensory systems in an organism." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim synonym: "sense organ system" EXACT [FMA:78499] xref: FMA:78499 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string [Term] id: UBERON:0004505 name: skeletal muscle tissue of orbicularis oculi namespace: uberon def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Automatically generated definition]." [OBOL:automatic] xref: FMA:261812 is_a: UBERON:0003269 ! skeletal muscle tissue of eye relationship: part_of UBERON:0001578 ! orbicularis oculi muscle [Term] id: UBERON:0004508 name: skeletal muscle tissue of levator palpebrae superioris namespace: uberon def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]." [OBOL:automatic] xref: FMA:261782 is_a: UBERON:0003269 ! skeletal muscle tissue of eye relationship: part_of UBERON:0001604 ! levator palpebrae superioris [Term] id: UBERON:0004548 name: left eye namespace: uberon def: "An eye that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "left eyeball" EXACT [FMA:12515] synonym: "left orbital part of face" NARROW [FMA:54450] synonym: "left orbital region" NARROW [FMA:54450] xref: EMAPA:37362 {source="MA:th"} xref: FMA:12515 xref: http://www.snomedbrowser.com/Codes/Details/362503005 xref: MA:0002949 xref: NCIT:C119334 is_a: UBERON:0000970 ! eye property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0004549 name: right eye namespace: uberon def: "An eye that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "right eyeball" EXACT [FMA:12514] synonym: "right orbital part of face" NARROW [FMA:54449] synonym: "right orbital region" NARROW [FMA:54449] xref: EMAPA:37363 {source="MA:th"} xref: FMA:12514 xref: http://www.snomedbrowser.com/Codes/Details/362502000 xref: MA:0002950 xref: NCIT:C119333 is_a: UBERON:0000970 ! eye property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0004637 name: otic capsule namespace: uberon def: "The capsule surrounding the inner ear mechanism." [http://www.biology-online.org/dictionary/Otic_capsule] synonym: "auditory capsule" RELATED [VHOG:0000854] synonym: "otic capsule" EXACT [ZFA:0001500] synonym: "otic capsule element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "otic capsule endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "otic capsule skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "otic region" RELATED [] synonym: "periotic" RELATED [] synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: http://www.snomedbrowser.com/Codes/Details/361515007 xref: VHOG:0000854 relationship: part_of UBERON:0001846 ! internal ear property_value: IAO:0000116 "developmental relationships need to be checked" xsd:string property_value: UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010143", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "The cartilage capsule surrounding the inner ear mechanism; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony. [Biology_online][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000854", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010143", ontology="AAO"} property_value: UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010143", ontology="AAO"} property_value: UBPROP:0000003 "Otic capsules develop around the parts of the ear that lie within the chondrocranium. This part of the ear, known as the inner ear, is composed of the semicircular ducts and associated sacs that contain the receptive cells for equilibrium and hearing (reference 1); (...) considerations have led to our rethinking issues related to the origin of several aspects of vertebrate hearing, and to the view that many basic auditory functions evolved very early in vertebrate history, and that the functions observed in more `advanced' vertebrates, such as birds and mammals, are frequently modifications of themes first encountered in fishes, and perhaps even more ancestral animals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000854", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.235, DOI:10.1016/S0378-5955(00)00168-4 Fay RR, Popper AN, Evolution of hearing in vertebrates: the inner ears and processing. Hearing research (2000)"} property_value: UBPROP:0000008 "in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)" xsd:string {source="Biology-Online"} [Term] id: UBERON:0004650 name: tongue keratinized epithelium namespace: uberon def: "A keratinized stratified squamous epithelium that is part of a tongue." [OBOL:automatic] synonym: "keratinized epithelium of tongue" EXACT [FMA:74865] xref: FMA:74865 xref: MA:0002787 is_a: UBERON:0006919 ! tongue squamous epithelium [Term] id: UBERON:0004681 name: vestibular system namespace: uberon def: "The sensory system for the sense of balance." [NLXANAT:090819] subset: pheno_slim synonym: "equilibrioception system" NARROW [] synonym: "vestibular organ system" EXACT [FMA:7193] synonym: "vestibular system" EXACT [NLXANAT:090819] synonym: "vestibulomotor system" NARROW [] xref: BTO:0003381 xref: EMAPA:37986 {source="MA:th"} xref: FMA:7193 xref: http://www.snomedbrowser.com/Codes/Details/361533001 xref: NLXANAT:090819 xref: Vestibular:system is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: UBPROP:0000001 "The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright[Wikipedia:Vestibular_system]." xsd:string {source="Vestibular:system"} property_value: UBPROP:0000012 "FMA and NIF have no part information for this class. This is a GAT in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0004692 name: external naris epithelium namespace: uberon def: "An epithelium that is part of an external naris [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:18596 xref: MA:0001321 is_a: UBERON:0019306 ! nose epithelium is_a: UBERON:0035036 ! naris epithelium relationship: part_of UBERON:0005928 ! external naris [Term] id: UBERON:0004694 name: Harderian gland epithelium namespace: uberon def: "An epithelium that is part of a Harderian gland [Automatically generated definition]." [OBOL:automatic] synonym: "epithelium of harderian gland" EXACT [] synonym: "harderian gland epithelium" EXACT [MA:0001248] xref: MA:0001248 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0004187 ! Harderian gland [Term] id: UBERON:0004721 name: crista ampullaris namespace: uberon def: "The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration." [http://en.wikipedia.org/wiki/Crista_ampullaris] subset: organ_slim subset: pheno_slim synonym: "ampullary crest" RELATED [MA:0002771] synonym: "ampullary crest of semicircular duct" EXACT [FMA:77714] synonym: "cristae ampullares" RELATED [http://en.wikipedia.org/wiki/Crista_ampullaris] xref: Crista:ampullaris xref: EMAPA:32791 xref: FMA:77714 xref: http://linkedlifedata.com/resource/umls/id/C0229465 xref: http://www.snomedbrowser.com/Codes/Details/368953000 xref: MA:0002771 xref: NCIT:C32063 xref: UMLS:C0229465 {source="ncithesaurus:Ampullary_Crest"} is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png xsd:anyURI [Term] id: UBERON:0004724 name: medial palpebral ligament namespace: uberon def: "The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest." [http://en.wikipedia.org/wiki/Medial_palpebral_ligament] synonym: "l. palpebrale mediale" RELATED LATIN [http://en.wikipedia.org/wiki/Medial_palpebral_ligament] xref: EMAPA:37608 {source="MA:th"} xref: http://en.wikipedia.org/wiki/Medial_palpebral_ligament xref: http://linkedlifedata.com/resource/umls/id/C0229251 xref: http://www.snomedbrowser.com/Codes/Details/280578002 xref: MA:0001258 xref: NCIT:C52724 xref: UMLS:C0229251 {source="ncithesaurus:Medial_Palpebral_Ligament"} relationship: part_of UBERON:0004772 ! eyelid tarsus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png xsd:anyURI [Term] id: UBERON:0004727 name: cochlear nerve namespace: uberon def: "A nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [http://en.wikipedia.org/wiki/Cochlear_nerve] subset: pheno_slim subset: uberon_slim synonym: "auditory nerve" EXACT [FMA:53431] synonym: "cochlear component" BROAD [] synonym: "cochlear root of acoustic nerve" EXACT [FMA:53431] synonym: "cochlear root of eighth cranial nerve" EXACT [FMA:53431] synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490] synonym: "vestibulocochlear nerve cochlear component" RELATED [EMAPA:17802] synonym: "vestibulocochlear VIII nerve cochlear component" EXACT [MA:0001110] xref: BAMS:cVIIIn xref: BM:VIIIN xref: BTO:0003490 xref: Cochlear:nerve xref: EHDAA2:0002195 xref: EMAPA:17802 xref: FMA:53431 xref: GAID:723 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1406 xref: http://linkedlifedata.com/resource/umls/id/C0009201 xref: http://www.snomedbrowser.com/Codes/Details/280286001 xref: MA:0001110 xref: MBA:948 xref: MESH:D003056 xref: NCIT:C12697 xref: OpenCyc:Mx4rwIhQfZwpEbGdrcN5Y29ycA xref: UMLS:C0009201 {source="ncithesaurus:Cochlear_Nerve"} xref: VHOG:0001182 relationship: part_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: UBERON:0004771 name: posterior nasal aperture namespace: uberon def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, http://en.wikipedia.org/wiki/Posterior_nasal_apertures] subset: pheno_slim synonym: "choana" BROAD [http://en.wikipedia.org/wiki/Choane, XAO:0000277] synonym: "choanae" RELATED PLURAL [VHOG:0000545] synonym: "internal naris" BROAD [MA:0001323] synonym: "nasopharyngeal naris" RELATED [] synonym: "posterior choana" RELATED [HP:0004496] synonym: "posterior naris" RELATED [VHOG:0000545] synonym: "posterior nasal apperture" EXACT [XAO:0000277] xref: AAO:0000093 xref: EHDAA2:0000242 xref: EHDAA:7842 xref: EMAPA:17849 xref: FMA:53143 xref: http://en.wikipedia.org/wiki/Posterior_nasal_apertures xref: http://www.snomedbrowser.com/Codes/Details/244507001 xref: MA:0001323 xref: VHOG:0000545 xref: XAO:0000277 is_a: UBERON:0010425 ! internal naris property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/87/Gray855.png xsd:anyURI property_value: UBPROP:0000001 "One of the paired openings from the nasal cavities into the pharynx. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-6, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000545", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: UBPROP:0000001 "Opening between the nasal cavity and the nasopharynx.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000093", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000003 "The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000545", ontology="VHOG", source="http://bgee.unil.ch/", source="DOI:10.1038/nature02843 Zhu M, Ahlberg PE, The origin of the internal nostril in tetrapodes. Nature (2004)"} property_value: UBPROP:0000008 "Fish don't have choanae, instead they have two pairs of external nostrils" xsd:string {source="WP"} property_value: UBPROP:0000008 "In addition to tetrapods, the lungfish has internal nostrils too. In tetrapods the exhalant nostril (choana) empties into the buccal cavity." xsd:string [Term] id: UBERON:0004772 name: eyelid tarsus namespace: uberon def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [http://en.wikipedia.org/wiki/Tarsus_(eyelids)] subset: organ_slim synonym: "eyelid tarsi" RELATED PLURAL [] synonym: "tarsal plate" EXACT [FMA:59086] synonym: "tarsal plate of eyelid" EXACT [FMA:59086] synonym: "tarsi" RELATED PLURAL [] synonym: "tarsus palpebralis" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] xref: FMA:59086 xref: http://linkedlifedata.com/resource/umls/id/C0459586 xref: http://www.snomedbrowser.com/Codes/Details/362529005 xref: MA:0000270 xref: NCIT:C33736 xref: Tarsus:(eyelids) xref: UMLS:C0459586 {source="ncithesaurus:Tarsal_Plate"} relationship: part_of UBERON:0003581 {source="cjm"} ! eyelid connective tissue property_value: UBPROP:0000008 "In most taxa (birds, mammals, lizards), the tarsal plate is described as a dense, fibrous connective tissue, possibly including cartilage, present within one or both of the upper and lower eyelids (Gau- thier et al., 1988; Rieppel, 2000). In humans, the tarsal plate of the upper eyelid is composed of collagens types I, III, and V, as well as glycosaminogly- cans (chondroitin sulphate 4 and 6), aggrecan, and cartilage oligomeric matrix proteins but lacks collagen type II as well as chondrocytes (Milz et al., 2005). Thus, for humans, the upper tarsal plate represents neither a truly fibrous nor a truly cartilagi- nous element but instead one that is composed of a unique transitional tissue (Milz et al., 2005). In many birds, lizards, and Sphenodon (the tuatara), the upper eyelid has lim- ited mobility and a putative tarsal plate is instead found within the lower eyelid (Underwood, 1970; Gau- thier et al., 1988)." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/16496288"} [Term] id: UBERON:0004773 name: superior eyelid tarsus namespace: uberon def: "An eyelid tarsus that is part of a upper eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "superior tarsal plate" EXACT [FMA:59087] synonym: "superior tarsus" EXACT [FMA:59087] synonym: "superior tarsus of eyelid" EXACT [] synonym: "tarsal plate of upper eyelid" EXACT [FMA:59087] synonym: "tarsus of upper eyelid" EXACT [] synonym: "tarsus superior" EXACT LATIN [FMA:59087, FMA:TA] xref: EMAPA:37607 {source="MA:th"} xref: FMA:59087 xref: http://www.snomedbrowser.com/Codes/Details/368773004 xref: MA:0001260 xref: Tarsus:(eyelids) is_a: UBERON:0004772 ! eyelid tarsus relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0004774 name: inferior eyelid tarsus namespace: uberon def: "An eyelid tarsus that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic] synonym: "inferior tarsal plate" EXACT [FMA:59088] synonym: "inferior tarsus" EXACT [FMA:59088] synonym: "inferior tarsus of eyelid" EXACT [] synonym: "tarsal plate of lower eyelid" EXACT [FMA:59088] synonym: "tarsus inferior" EXACT LATIN [FMA:59088, FMA:TA] synonym: "tarsus of lower eyelid" EXACT [] xref: EMAPA:37606 {source="MA:th"} xref: FMA:59088 xref: http://www.snomedbrowser.com/Codes/Details/368774005 xref: MA:0001257 is_a: UBERON:0004772 ! eyelid tarsus relationship: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0004817 name: lacrimal gland epithelium namespace: uberon def: "An epithelium that is part of a lacrimal gland [Automatically generated definition]." [OBOL:automatic] synonym: "epithelial tissue of lacrimal gland" EXACT [OBOL:automatic] synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic] synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic] xref: EMAPA:36515 xref: MA:0001297 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001817 ! lacrimal gland [Term] id: UBERON:0004859 name: eye gland namespace: uberon def: "A gland that is part of a eye. The eye is a compound unit which depending on the species may consist of an eyeballs plus associated ducts and integumentary structures. Eye glands therefore include the various types of lacrimal gland, the various types of apocrine and sebaceous glands associated with the eyelid." [http://orcid.org/0000-0002-6601-2165] comment: Examples: harderian gland, accessory lacrimal gland, gland of Moll, gland of Zeis, nictitating membrane glands subset: organ_slim synonym: "eye-associated gland" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "gland of eye" EXACT [OBOL:automatic] xref: EMAPA:35334 xref: MA:0000267 relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0004864 name: vasculature of retina namespace: uberon def: "A vasculature that is part of a retina [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim synonym: "retina vasculature" EXACT [GO:0061298] synonym: "retina vasculature of camera-type eye" EXACT [GO:0061298] synonym: "retinal blood vessels" EXACT [FMA:76552] synonym: "retinal blood vessels set" EXACT [FMA:76552] synonym: "retinal vasculature" EXACT [OBOL:automatic] synonym: "set of blood vessels of retina" EXACT [OBOL:automatic] synonym: "set of retinal blood vessels" EXACT [FMA:76552] synonym: "vasa sanguinea retinae" EXACT LATIN [FMA:76552, FMA:TA] xref: FMA:76552 xref: MESH:D012171 xref: XAO:0004153 is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0004868 name: tapetum lucidum of camera-type eye namespace: uberon def: "A layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors" [http://en.wikipedia.org/wiki/Tapetum_lucidum, http://www.ncbi.nlm.nih.gov/pubmed/14738502] synonym: "tapeta lucida" EXACT PLURAL [] synonym: "tapetum lucidum" EXACT [] synonym: "tapis luisant@fr" EXACT [] xref: Tapetum:lucidum is_a: UBERON:0015169 ! tapetum relationship: part_of UBERON:0010230 ! eyeball of camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/76/TapetumLucidum.JPG xsd:anyURI property_value: UBPROP:0000001 "The tapetum lucidum is a biologic reflector system that is a common feature in the eyes of vertebrates. Typically absent in diurnal animals. In vertebrates, the tapetum lucidum exhibits diverse structure, organization and composition. The tapetum lucidum represents a remarkable example of neural cell and tissue specialization as an adaptation to a dim light environment and, despite these differences, all tapetal variants act to increase retinal sensitivity by reflecting light back through the photoreceptor layer. These variations regarding both its location and structure, as well as the choice of reflective material, may represent selective visual adaptations associated with their feeding behavior, in response to the use of specific wavelengths and amount of reflectance required.[PMID:14738502]." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: UBPROP:0000007 "tapetal" xsd:string property_value: UBPROP:0000008 "Two morphologic types of tapetum lucidum can be observed in the eyes of fish: one in the choroid that occurs in elasmobranchs, and the other which occurs in teleosts and lies in the pigment epithelium of the retina" xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: UBPROP:0000009 "It normally functions at low light levels to provide the light-sensitive retinal cells with a second opportunity for photon-photoreceptor stimulation, thereby enhancing visual sensitivity" xsd:string [Term] id: UBERON:0004904 name: neuron projection bundle connecting eye with brain namespace: uberon def: "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila" [http://orcid.org/0000-0002-6601-2165] comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) subset: grouping_class subset: pheno_slim synonym: "optic nerve" BROAD [BTO:0000966] synonym: "optic nerve (generic)" EXACT [] xref: BTO:0000966 xref: EV:0100351 xref: FBbt:00001956 xref: TADS:0000232 relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0005017 name: mucosa of lacrimal sac namespace: uberon def: "A mucosa that is part of a lacrimal sac [Automatically generated definition]." [OBOL:automatic] synonym: "lacrimal sac mucosa" EXACT [OBOL:automatic] synonym: "lacrimal sac mucosa of organ" EXACT [OBOL:automatic] synonym: "lacrimal sac mucous membrane" EXACT [OBOL:automatic] synonym: "lacrimal sac organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of lacrimal sac" EXACT [OBOL:automatic] synonym: "mucous membrane of lacrimal sac" EXACT [OBOL:automatic] synonym: "organ mucosa of lacrimal sac" EXACT [OBOL:automatic] xref: FMA:72061 is_a: UBERON:0005043 ! mucosa of nasolacrimal duct relationship: part_of UBERON:0001351 ! lacrimal sac [Term] id: UBERON:0005018 name: mucosa of nasal septum namespace: uberon def: "A mucosa that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of organ of nasal septum" EXACT [OBOL:automatic] synonym: "mucous membrane of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum mucosa" EXACT [OBOL:automatic] synonym: "nasal septum mucosa of organ" EXACT [OBOL:automatic] synonym: "nasal septum mucous membrane" EXACT [OBOL:automatic] synonym: "nasal septum organ mucosa" EXACT [OBOL:automatic] synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic] xref: EMAPA:36028 xref: FMA:60113 relationship: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0005020 name: mucosa of tongue namespace: uberon def: "A mucosa that is part of a tongue [Automatically generated definition]." [OBOL:automatic] subset: efo_slim synonym: "lingual mucosa" EXACT [FMA:54807] synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic] synonym: "mucous membrane of tongue" EXACT [OBOL:automatic] synonym: "organ mucosa of tongue" EXACT [OBOL:automatic] synonym: "tongue mucosa" EXACT [OBOL:automatic] synonym: "tongue mucosa of organ" EXACT [OBOL:automatic] synonym: "tongue mucous membrane" EXACT [OBOL:automatic] synonym: "tongue organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa linguae" EXACT LATIN [FMA:54807, FMA:TA] xref: EFO:0002553 xref: FMA:54807 xref: http://www.snomedbrowser.com/Codes/Details/362092002 relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0005026 name: mucosa of middle ear namespace: uberon def: "A mucosa that is part of a middle ear [Automatically generated definition]." [OBOL:automatic] synonym: "middle ear mucosa" EXACT [OBOL:automatic] synonym: "middle ear mucosa of organ" EXACT [OBOL:automatic] synonym: "middle ear mucous membrane" EXACT [OBOL:automatic] synonym: "middle ear organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of middle ear" EXACT [OBOL:automatic] synonym: "mucosa of tympanic cavity" EXACT [FMA:59663] synonym: "mucous membrane of middle ear" EXACT [OBOL:automatic] synonym: "organ mucosa of middle ear" EXACT [OBOL:automatic] synonym: "tunica mucosa cavitatis tympanicae" EXACT LATIN [FMA:59663, FMA:TA] xref: CALOHA:TS-0631 xref: FMA:59663 relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0005029 name: mucosa of lacrimal canaliculus namespace: uberon def: "A mucosa that is part of a lacrimal canaliculus [Automatically generated definition]." [OBOL:automatic] synonym: "lacrimal canalicular mucosa" EXACT [FMA:85366] synonym: "lacrimal canaliculus mucosa" EXACT [OBOL:automatic] synonym: "lacrimal canaliculus mucosa of organ" EXACT [OBOL:automatic] synonym: "lacrimal canaliculus mucous membrane" EXACT [OBOL:automatic] synonym: "lacrimal canaliculus organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of organ of lacrimal canaliculus" EXACT [OBOL:automatic] synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic] synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic] xref: FMA:85366 relationship: part_of UBERON:0001770 ! lacrimal canaliculus [Term] id: UBERON:0005042 name: inner epithelial layer of tympanic membrane namespace: uberon def: "A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://orcid.org/0000-0002-6601-2165] synonym: "mucosa of tympanic membrane" EXACT [FMA:56844] synonym: "mucous layer of tympanic membrane" EXACT [FMA:56844] synonym: "mucous stratum of tympanic membrane" EXACT [FMA:56844] synonym: "tympanic membrane external middle ear cavity epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "tympanic membrane mucosa" EXACT [FMA:56844] xref: FMA:56844 xref: http://www.snomedbrowser.com/Codes/Details/36411006 is_a: UBERON:0009647 ! tympanic membrane epithelium relationship: part_of UBERON:0010063 ! tympanic cavity epithelium property_value: UBPROP:0000012 "in FMA this is classified as a mucosa" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0005043 name: mucosa of nasolacrimal duct namespace: uberon def: "A mucosa that is part of a nasolacrimal duct [Automatically generated definition]." [OBOL:automatic] synonym: "mucosa of organ of nasolacrimal duct" EXACT [OBOL:automatic] synonym: "mucous membrane of nasolacrimal duct" EXACT [OBOL:automatic] synonym: "nasolacrimal duct mucosa" EXACT [OBOL:automatic] synonym: "nasolacrimal duct mucosa of organ" EXACT [OBOL:automatic] synonym: "nasolacrimal duct mucous membrane" EXACT [OBOL:automatic] synonym: "nasolacrimal duct organ mucosa" EXACT [OBOL:automatic] synonym: "nasolacrimal ductal mucosa" EXACT [FMA:59664] synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic] xref: FMA:59664 relationship: part_of UBERON:0002392 ! nasolacrimal duct [Term] id: UBERON:0005044 name: mucosa of pharyngotympanic tube namespace: uberon def: "A mucosa that is part of a pharyngotympanic tube [Automatically generated definition]." [OBOL:automatic] synonym: "auditory tube mucosa" EXACT [OBOL:automatic] synonym: "auditory tube mucosa of organ" EXACT [OBOL:automatic] synonym: "auditory tube mucous membrane" EXACT [OBOL:automatic] synonym: "auditory tube organ mucosa" EXACT [OBOL:automatic] synonym: "internal auditory tube mucosa" EXACT [OBOL:automatic] synonym: "internal auditory tube mucosa of organ" EXACT [OBOL:automatic] synonym: "internal auditory tube mucous membrane" EXACT [OBOL:automatic] synonym: "internal auditory tube organ mucosa" EXACT [OBOL:automatic] synonym: "mucosa of auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of internal auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of internal auditory tube" EXACT [OBOL:automatic] synonym: "mucosa of organ of pharyngotympanic tube" EXACT [OBOL:automatic] synonym: "mucous membrane of auditory tube" EXACT [OBOL:automatic] synonym: "mucous membrane of internal auditory tube" EXACT [OBOL:automatic] synonym: "mucous membrane of pharyngotympanic tube" EXACT [OBOL:automatic] synonym: "mucuous membrane of eustachian tube" EXACT [FMA:60109] synonym: "mucuous membrane of pharyngotympanic tube" EXACT [FMA:60109] synonym: "organ mucosa of auditory tube" EXACT [OBOL:automatic] synonym: "organ mucosa of internal auditory tube" EXACT [OBOL:automatic] synonym: "organ mucosa of pharyngotympanic tube" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube mucosa" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube mucosa of organ" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube mucous membrane" EXACT [OBOL:automatic] synonym: "pharyngotympanic tube organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa (tuba auditiva)" EXACT [FMA:60109] synonym: "tunica mucosa (tuba auditoria)" EXACT [FMA:60109] xref: FMA:60109 is_a: UBERON:0005026 ! mucosa of middle ear relationship: part_of UBERON:0002393 ! pharyngotympanic tube [Term] id: UBERON:0005067 name: amphid sensory organ namespace: uberon def: "Amphid sensory organs are the sensory organs of nematodes[GO]." [GO:0003386] subset: organ_slim synonym: "amphid sensillum" EXACT [] xref: WBbt:0005391 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0005236 name: osseus labyrinth vestibule namespace: uberon def: "A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear." [BTO:0003382, http://en.wikipedia.org/wiki/Vestibule_of_the_ear] subset: pheno_slim synonym: "bony labyrinth vestibule" EXACT [] synonym: "inner ear vestibule" RELATED [BTO:0003382] synonym: "inner ear vestibulum" EXACT [BTO:0003382] synonym: "osseous labyrinth vestibule" EXACT [OBOL:automatic] synonym: "vestibular apparatus" RELATED [GAID:881] synonym: "vestibular part of bony labyrinth" RELATED [FMA:60183] synonym: "vestibule" BROAD [MP:0000034, XAO:0000199] synonym: "vestibule of bony labyrinth" EXACT [FMA:60183] synonym: "vestibulum auris" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibule_of_the_ear] synonym: "vestibulum labyrinthi" RELATED LATIN [http://en.wikipedia.org/wiki/Vestibule_of_the_ear] xref: BTO:0003382 xref: CALOHA:TS-0479 xref: EV:0100366 xref: FMA:60183 xref: GAID:881 xref: http://en.wikipedia.org/wiki/Vestibule_of_the_ear xref: http://linkedlifedata.com/resource/umls/id/C0458718 xref: http://www.snomedbrowser.com/Codes/Details/181188003 xref: MA:0001185 xref: MESH:D014722 xref: NCIT:C33873 xref: UMLS:C0458718 {source="ncithesaurus:Vestibule"} xref: VHOG:0001220 xref: XAO:0000199 relationship: part_of UBERON:0001839 ! bony labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray919.png xsd:anyURI property_value: UBPROP:0000001 "The vestibule is the central part of the osseous labyrinth, and is situated medial to the tympanic cavity, behind the cochlea, and in front of the semicircular canals. [Wikipedia:Vestibule_of_the_ear][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001220", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005336 name: capillary layer of choroid namespace: uberon def: "The capillary lamina of choroid or choriocapillaris is a layer of capillaries that is immediately adjacent to Bruch's membrane in the choroid." [http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid] synonym: "capillary lamina of choroid" EXACT [FMA:58437] synonym: "capillary lamina of choroid or choriocapillaris" RELATED [] synonym: "capillary layer of choroid" EXACT [FMA:58437] synonym: "choriocapillaris" RELATED [http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid] synonym: "inner layer of choroid proper" EXACT [FMA:58437] synonym: "lamina choriocapillaris" RELATED [] synonym: "lamina choroidocapillaris" RELATED LATIN [http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid] xref: FMA:58437 xref: http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid xref: http://www.snomedbrowser.com/Codes/Details/280899009 relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] id: UBERON:0005342 name: malleus head namespace: uberon def: "rounded portion of the malleus that articulates with the body of the incus[MP]." [MP:0008379] subset: pheno_slim synonym: "head of malleus" EXACT [FMA:52761] xref: FMA:52761 xref: http://www.snomedbrowser.com/Codes/Details/368926004 xref: MA:0002987 relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005354 name: malleus processus brevis namespace: uberon def: "The projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] subset: pheno_slim relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005355 name: malleus neck namespace: uberon def: "The narrow contracted section of the malleus located between the head and the manubrium[MP]." [http://en.wikipedia.org/wiki/Neck_of_malleus, MP:0010327] subset: pheno_slim synonym: "collum mallei" RELATED LATIN [http://en.wikipedia.org/wiki/Neck_of_malleus] synonym: "neck of malleus" EXACT [FMA:52762] xref: FMA:52762 xref: http://en.wikipedia.org/wiki/Neck_of_malleus xref: http://www.snomedbrowser.com/Codes/Details/368927008 xref: MA:0002988 relationship: part_of UBERON:0001689 ! malleus bone property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png xsd:anyURI [Term] id: UBERON:0005384 name: nasal cavity epithelium namespace: uberon def: "An epithelium that lines the nasal cavity." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "nasal epithelium" EXACT [FMA:63140] synonym: "nasal mucosa" RELATED [MA:0001324] xref: CALOHA:TS-0656 xref: EHDAA2:0001227 xref: EHDAA:6803 xref: EMAPA:17605 xref: FMA:63140 xref: http://linkedlifedata.com/resource/umls/id/C1709151 xref: MA:0001324 xref: NCIT:C49261 xref: UMLS:C1709151 {source="ncithesaurus:Nasal_Cavity_Epithelium"} xref: VHOG:0000501 is_a: UBERON:0019306 ! nose epithelium relationship: part_of UBERON:0001826 ! nasal cavity mucosa property_value: IAO:0000116 "this class may in future be split into the embryonic precursor of the oronasal membrane and the structure that is part of the mucosa in the developed organism" xsd:string [Term] id: UBERON:0005385 name: nasal cavity respiratory epithelium namespace: uberon def: "An epithelium that is part of the respiratory segment of the nasal mucosa [Automatically generated definition]." [https://github.com/obophenotype/uberon/issues/50, OBOL:automatic] xref: EHDAA2:0001230 xref: EHDAA:6807 xref: EMAPA:17607 xref: http://linkedlifedata.com/resource/umls/id/C1709152 xref: MA:0001326 xref: NCIT:C49262 xref: UMLS:C1709152 {source="ncithesaurus:Nasal_Cavity_Respiratory_Epithelium"} is_a: UBERON:0005384 ! nasal cavity epithelium relationship: part_of UBERON:0015786 ! respiratory segment of nasal mucosa property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0005386 name: olfactory segment of nasal mucosa namespace: uberon def: "That portion of the nasal mucosa containing the sensory endings for olfaction; the organ of smell[MESH]." [http://en.wikipedia.org/wiki/Olfactory_mucosa, MESH:A04.531.520.573] subset: pheno_slim synonym: "olfactory area of nasal mucosa" EXACT [FMA:77199] synonym: "olfactory mucosa" EXACT [] synonym: "olfactory part of nasal mucosa" EXACT [FMA:77199] synonym: "olfactory zone of nasal mucosa" EXACT [FMA:77199] synonym: "pars olfactoria tunicae mucosae nasi" EXACT LATIN [FMA:77199, FMA:TA] synonym: "pars olfactoria tunicae mucosae nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Olfactory_mucosa] xref: CALOHA:TS-2197 xref: EMAPA:37918 {source="MA:th"} xref: FMA:77199 xref: GAID:303 xref: http://linkedlifedata.com/resource/umls/id/C0028937 xref: MESH:D009831 xref: NCIT:C33205 xref: Olfactory:mucosa xref: UMLS:C0028937 {source="ncithesaurus:Olfactory_Mucosa"} is_a: UBERON:0001826 ! nasal cavity mucosa relationship: part_of UBERON:0005725 ! olfactory system property_value: UBPROP:0000001 "The olfactory mucosa is located in the upper region of the nasal cavity and is made up of the olfactory epithelium and the underlying lamina propria, connective tissue containing fibroblasts, blood vessels, Bowman's glands and bundles of fine axons from the olfactory neurons. The mucus protects the olfactory epithelium and allows odors to dissolve so that they can be detected by olfactory receptor neurons. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP][Wikipedia:Olfactory_mucosa]." xsd:string {source="Olfactory:mucosa"} [Term] id: UBERON:0005388 name: photoreceptor array namespace: uberon def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165] synonym: "light-sensitive tissue" EXACT [] xref: FBbt:00004200 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0005389 name: transparent eye structure namespace: uberon def: "A transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "lens" NARROW [] is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000970 ! eye property_value: UBPROP:0000009 "directing or focusing light onto light receptors" xsd:string [Term] id: UBERON:0005410 name: cartilaginous otic capsule namespace: uberon alt_id: UBERON:0010351 def: "A otic capsule endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] subset: vertebrate_core synonym: "auditory capsule" EXACT [ZFA:0001500] synonym: "otic capsule cartilage element" EXACT [] xref: EHDAA2:0001333 xref: EHDAA:4704 xref: EMAPA:17596 xref: EMAPA:18803 xref: EMAPA:37467 {source="MA:th"} xref: TAO:0001500 xref: ZFA:0001500 is_a: UBERON:0004637 ! otic capsule property_value: UBPROP:0000001 "Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO"} property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO"} property_value: UBPROP:0000008 "In elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans). todo - check EMAPA" xsd:string [Term] id: UBERON:0005411 name: bony otic capsule namespace: uberon def: "the cartilage or bony capsule surrounding the inner ear mechanism" [ISBN:0-683-40008-8, MP:0000039] subset: pheno_slim synonym: "otic capsule bone" EXACT [] xref: EMAPA:17596 xref: EMAPA:37466 {source="MA:th"} xref: MA:0000252 is_a: UBERON:0004637 ! otic capsule property_value: UBPROP:0000008 "In elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)" xsd:string [Term] id: UBERON:0005427 name: corneal primordium namespace: uberon def: "Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3] xref: TAO:0002188 xref: ZFA:0001688 relationship: part_of UBERON:0000019 {source="ZFA"} ! camera-type eye [Term] id: UBERON:0005492 name: hyaloid vessel namespace: uberon def: "A blood vessel that is associated with the lens. In mammals, this is transient and normally nourishes the retina, immature lens and primary vitreous of the developing eye." [MP:0001289, ZFA:0005046] subset: vertebrate_core synonym: "hyaloid blood vessels" EXACT PLURAL [XAO:0004154] synonym: "hyaloid capillary system" RELATED [MP:0001289] synonym: "hyaloid vascular system" RELATED [MP:0001289] synonym: "hyaloid vasculature" RELATED [ZFA:0005046] synonym: "hyaloid vessels" EXACT PLURAL [TAO:0005046] xref: EHDAA:4735 xref: TAO:0005046 xref: VHOG:0000232 xref: XAO:0004154 xref: ZFA:0005046 relationship: part_of UBERON:0002203 {source="ZFA-modified"} ! vasculature of eye property_value: IAO:0000116 "we are currently conflating vessel and vasculature - we may wish to split this class - see also vascular plexus term. The ZFA class represents the vasculature" xsd:string [Term] id: UBERON:0005600 name: crus commune namespace: uberon def: "A region formed by non-ampulated ends of posterior and superior semicircular canals of vestibular apparatus in inner ear." [http://emedicine.medscape.com/article/883956-overview] subset: pheno_slim synonym: "crus commune" RELATED [MA:0001210] synonym: "crus commune canalis semicircularis" EXACT [] xref: EHDAA2:0000330 xref: EHDAA:7783 xref: EMAPA:17818 xref: http://www.snomedbrowser.com/Codes/Details/279758009 xref: MA:0001210 xref: VHOG:0001344 relationship: part_of UBERON:0001856 ! semicircular duct [Term] id: UBERON:0005606 name: hyaloid cavity namespace: uberon xref: EHDAA2:0000789 xref: EHDAA:4733 xref: EMAPA:17302 xref: FMA:312291 xref: MA:0000272 xref: VHOG:0001477 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0002203 ! vasculature of eye property_value: UBPROP:0000001 "A depression in the front of the vitreous body, lodging the lens. [adapted_from_the_definition_of_the_hyaloid_fossa]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001477", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/hyaloid+fossa"} [Term] id: UBERON:0005611 name: inner canthus namespace: uberon def: "A corner of the medial (inner) part of an eye." [http://orcid.org/0000-0002-6601-2165] synonym: "inner canthi" RELATED PLURAL [] synonym: "medial canthus" RELATED [MA:0001262] synonym: "medial canthus of eye" RELATED [] synonym: "medial palpebral commissure" EXACT [FMA:59316] synonym: "nasal canthus" RELATED [] xref: EHDAA2:0000829 xref: EMAPA:17830 xref: FMA:59316 xref: http://linkedlifedata.com/resource/umls/id/C1708516 xref: http://www.snomedbrowser.com/Codes/Details/362526003 xref: MA:0001262 xref: NCIT:C49564 xref: UMLS:C1708516 {source="ncithesaurus:Inner_Canthus"} xref: VHOG:0000829 is_a: UBERON:0006742 ! canthus property_value: UBPROP:0000001 "The angle at the end of the palpebral fissure, the slit between the eyelids, close to the nose. [ISBN:0124020607, p.263][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000829", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0005614 name: lens anterior epithelium namespace: uberon def: "A layer of cuboidal epithelial cells bounded anteriorly by the capsule of the lens and posteriorly by the lens cortex." [http://orcid.org/0000-0002-6601-2165] synonym: "anterior epithelium of lens vesicle" RELATED [EMAPA:17304] synonym: "anterior surface of lens" RELATED [FMA:58889] synonym: "lens epithelium" BROAD [] synonym: "lens subcapsular epithelium" EXACT [http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm] synonym: "subcapsular lens epithelium" EXACT [FMA:70612] xref: EHDAA2:0000984 xref: EHDAA:9059 xref: EMAPA:17304 xref: EMAPA:17839 xref: FMA:70612 xref: http://linkedlifedata.com/resource/umls/id/C1182652 xref: http://www.snomedbrowser.com/Codes/Details/362521008 xref: MA:0001302 xref: NCIT:C33641 xref: RETIRED_EHDAA2:0000976 xref: UMLS:C1182652 {source="ncithesaurus:Subcapsular_Epithelium_of_the_Lens"} xref: VHOG:0001425 is_a: UBERON:0001803 ! epithelium of lens property_value: UBPROP:0000010 "Cells of the subcapsular epithelium (or anterior lens cells) are mitotically active. In adult individuals they only cover the anterior 'hemisphere' of the lens. As they divide, cells gradually move towards the equator of the lens where they tranform into lens fibres. The apical part of the gradually elongating cell extends between the subcapsular epithelium and adjacent lens fibres towards the anterior pole of the lens. The basal part extends towards the posterior pole. The nucleus remains close to the equatorial plane of the lens - http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm" xsd:string [Term] id: UBERON:0005615 name: lens equatorial epithelium namespace: uberon xref: EHDAA:9063 xref: EMAPA:17840 xref: MA:0001303 xref: RETIRED_EHDAA2:0000978 xref: VHOG:0001459 is_a: UBERON:0001803 ! epithelium of lens [Term] id: UBERON:0005625 name: tubotympanic recess lumen namespace: uberon def: "The cavity formed by the tubotympanic recess epithelium." [https://orcid.org/0000-0002-6601-2165] synonym: "cavity of tubotympanic recess" EXACT [] synonym: "tubotympanic recess" RELATED [EHDAA2:0002095] synonym: "tubotympanic recess cavity" EXACT [] synonym: "tubotympanic recess space" EXACT [] xref: EHDAA2:0002095 xref: FMA:312393 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0010020 ! tubotympanic recess epithelium [Term] id: UBERON:0005638 name: anterior chamber epithelium namespace: uberon def: "An epithelium that is part of a anterior chamber of eyeball." [OBOL:automatic] xref: EHDAA2:0000130 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0005657 name: crus commune epithelium namespace: uberon def: "An epithelium that is part of a crus commune." [OBOL:automatic] xref: EMAPA:17820 xref: RETIRED_EHDAA2:0000332 xref: VHOG:0000478 is_a: UBERON:0006932 ! vestibular epithelium relationship: part_of UBERON:0005600 ! crus commune [Term] id: UBERON:0005725 name: olfactory system namespace: uberon def: "A sensory system that is capable of olfacttion (the sensory perception of smell)." [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim subset: vertebrate_core xref: AAO:0000334 xref: AAO:0000978 xref: BILA:0000144 xref: EFO:0001973 xref: EMAPA:36004 xref: FMA:7190 xref: http://linkedlifedata.com/resource/umls/id/C0228065 xref: http://www.snomedbrowser.com/Codes/Details/362290002 xref: MA:0002445 xref: NCIT:C94501 xref: NLXANAT:090806 xref: Olfactory:system xref: OpenCyc:Mx4rvViw75wpEbGdrcN5Y29ycA xref: TAO:0001149 xref: UMLS:C0228065 {source="ncithesaurus:Olfactory_System"} xref: XAO:0003196 xref: ZFA:0001149 is_a: UBERON:0005726 ! chemosensory system property_value: IAO:0000116 "consider splitting into main and accessory. See also: vomeronasal organ" xsd:string property_value: IAO:0000116 "we make the relationship to nervous system 'overlaps', as the olfactory system includes e.g. apertures in the cranium that are not part of the nervous system" xsd:string property_value: UBPROP:0000001 "The olfactory system is the sensory system used for olfaction, or the sense of smell. Most mammals and reptiles have two distinct parts to their olfactory system: a main olfactory system and an accessory olfactory system. The main olfactory system detects volatile, airborne substances, while the accessory olfactory system senses fluid-phase stimuli. Behavioral evidence indicates that most often, the stimuli detected by the accessory olfactory system are pheromones. The olfactory system is often spoken of along with the gustatory system as the chemosensory senses because both transduce chemical signals into perception[WP][Wikipedia:Olfactory_system]." xsd:string {source="Olfactory:system"} property_value: UBPROP:0000001 "The sensory system used for olfaction (the sense of smell).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000978", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000008 "In mammals, the main olfactory system detects odorants that are inhaled through the nose, where they contact the main olfactory epithelium, which contains various olfactory receptors. These olfactory receptors are membrane proteins of bipolar olfactory receptor neurons in the olfactory epithelium. Rather than binding specific ligands like most receptors, olfactory receptors display affinity for a range of odor molecules. Olfactory neurons transduce receptor activation into electrical signals in neurons. The signals travel along the olfactory nerve, which belongs to the peripheral nervous system. This nerve terminates in the olfactory bulb, which belongs to the central nervous system. The complex set of olfactory receptors on different olfactory neurons can distinguish a new odor from the background environmental odors and determine the concentration of the odor[WP]." xsd:string [Term] id: UBERON:0005726 name: chemosensory system namespace: uberon subset: functional_classification xref: BILA:0000139 is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0005870 name: olfactory pit namespace: uberon def: "An indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, http://en.wikipedia.org/wiki/Nasal_pit] subset: efo_slim subset: pheno_slim synonym: "nasal pit" EXACT [XAO:0000275] xref: AAO:0011068 xref: EFO:0003496 xref: EHDAA2:0001295 xref: EHDAA:4772 xref: EMAPA:16800 xref: FMA:295840 xref: http://www.snomedbrowser.com/Codes/Details/361485001 xref: Nasal:pit xref: XAO:0000275 xref: XAO:0004073 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose property_value: IAO:0000116 "we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode" xsd:string property_value: UBPROP:0000001 "By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the nasal pits or olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[Wikipedia:Nasal_pit]." xsd:string {source="Nasal:pit"} [Term] id: UBERON:0005908 name: conjunctival sac namespace: uberon def: "A serous sac which is the aggregate of the conjunctiva plus the conjunctival space" [https://github.com/obophenotype/uberon/wiki/Serous-Membranes-Design-Pattern] synonym: "conjunctiva serous sac" EXACT [] synonym: "subbrillar sac" NARROW [NCBITaxon:8570] xref: EMAPA:18233 xref: FMA:20291 xref: http://www.snomedbrowser.com/Codes/Details/362531001 relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye [Term] id: UBERON:0005928 name: external naris namespace: uberon def: "A naris that provides one of the small external openings of the head that give passage to air for breathing." [http://en.wikipedia.org/wiki/Nostril, http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: vertebrate_core synonym: "anterior nares" RELATED PLURAL [VHOG:0000544] synonym: "anterior naris" RELATED [ZFA:0001427] synonym: "blowhole" NARROW [http://en.wikipedia.org/wiki/Blowhole_(anatomy)] synonym: "external nares" EXACT PLURAL [] synonym: "naris" BROAD [ZFA:0000550] synonym: "nostril" EXACT [FMA:59645, XAO:0003033] xref: AAO:0000024 xref: AAO:0000983 xref: AAO:0010358 xref: EHDAA2:0001275 xref: EHDAA:9085 xref: EMAPA:17848 xref: FMA:59645 xref: http://en.wikipedia.org/wiki/Nostril xref: http://linkedlifedata.com/resource/umls/id/C0595944 xref: http://www.snomedbrowser.com/Codes/Details/276165005 xref: MA:0001320 xref: NCIT:C33178 xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA xref: TAO:0000550 xref: UMLS:C0595944 {source="ncithesaurus:Nostril"} xref: VHOG:0000544 xref: XAO:0003033 xref: ZFA:0000550 is_a: UBERON:0000003 ! naris relationship: part_of UBERON:0000004 ! nose property_value: UBPROP:0000001 "Hole on the nasal capsule that connects the nasal cavity with the exterior.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000024", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000002 "relationship loss: subclass nasal opening (AAO:0000316)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000024", ontology="AAO"} property_value: UBPROP:0000003 "In a tetrapod, the nasal sac has an external naris (homologous with the anterior naris of the fish) (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000544", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.257 and Figure 7.27"} property_value: UBPROP:0000008 "Fish have two pairs of external nostrils." xsd:string [Term] id: UBERON:0005931 name: primary choana namespace: uberon def: "initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate." [http://www.drugs.com/dict/primary-choana.html] xref: EHDAA:9087 xref: EMAPA:17851 xref: FMA:295944 xref: MA:0001322 is_a: UBERON:0000003 ! naris relationship: part_of UBERON:0005928 ! external naris property_value: IAO:0000116 "TODO - check. MA says part_of external naris." xsd:string [Term] id: UBERON:0005969 name: eye trabecular meshwork namespace: uberon alt_id: UBERON:0004028 def: "A pore-like structure surrounding the entire circumference of the anterior chamber of the eye through which aqueous humor circulates[MP]." [http://en.wikipedia.org/wiki/Trabecular_meshwork, MP:0005203] subset: efo_slim subset: pheno_slim synonym: "cribiform ligament" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "eye trabecular meshwork" EXACT [MA:0003086] synonym: "Hueck's ligament" RELATED [BTO:0001605] synonym: "iridis" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "ligamentum peactin-tum iridis" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "ligamentum pectinatum" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "ligamentum pectinatum anguli iridocornealis" RELATED [BTO:0001605] synonym: "ligamentum pectinatum iridis" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "pectinate ligament" RELATED [BTO:0001605] synonym: "pectinate ligament of iris" RELATED [BTO:0001605] synonym: "reticulum trabeculare" EXACT [BTO:0001605] synonym: "reticulum trabeculare sclerae" RELATED LATIN [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "scleral trabeculae" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "scleral trabecular" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "scleral trabecule" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "scribiform ligament" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "trabecular mesh" RELATED [http://en.wikipedia.org/wiki/Trabecular_meshwork] synonym: "trabecular meshwork" RELATED [BTO:0001605, GO:0002930] synonym: "trabecular meshwork of the eye" EXACT [http://en.wikipedia.org/wiki/Trabecular_meshwork] xref: BTO:0001605 xref: CALOHA:TS-1058 xref: EFO:0003077 xref: EV:0100352 xref: FMA:77660 xref: GAID:897 xref: http://linkedlifedata.com/resource/umls/id/C0040573 xref: http://www.snomedbrowser.com/Codes/Details/280694002 xref: MA:0003086 xref: MESH:D014129 xref: NCIT:C12803 xref: Trabecular:meshwork xref: UMLS:C0040573 {source="ncithesaurus:Trabecular_Meshwork"} relationship: part_of UBERON:0003956 ! aqueous drainage system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png xsd:anyURI property_value: IAO:0000116 "TODO check syns - ligaments" xsd:string [Term] id: UBERON:0005972 name: tunnel of Corti namespace: uberon def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151] subset: pheno_slim xref: EMAPA:37976 {source="MA:th"} is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0002227 ! spiral organ of cochlea [Term] id: UBERON:0005973 name: blood-inner ear barrier namespace: uberon def: "The function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier" [MP:0004999] relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0006010 name: hyaloid canal namespace: uberon def: "A small transparent canal running through the vitreous body from the optical nerve disc to the lens. It is formed by an invagination of the hyaloid, a membrane which encloses the vitreous body[WP]." [http://en.wikipedia.org/wiki/Hyaloid_canal] synonym: "canal of Cloquet" EXACT [FMA:58837] synonym: "canalis hyaloideus" EXACT LATIN [http://en.wikipedia.org/wiki/Hyaloid_canal] synonym: "Cloquet's canal" EXACT [FMA:58837, http://en.wikipedia.org/wiki/Hyaloid_canal] synonym: "Stilling's canal" EXACT [FMA:58837, http://en.wikipedia.org/wiki/Hyaloid_canal] xref: FMA:58837 xref: http://www.snomedbrowser.com/Codes/Details/362506002 xref: Hyaloid:canal relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png xsd:anyURI [Term] id: UBERON:0006011 name: hyaloid vein namespace: uberon synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047] xref: EHDAA2:0000791 xref: TAO:0005047 xref: XAO:0004156 xref: ZFA:0005047 is_a: UBERON:0005492 ! hyaloid vessel property_value: UBPROP:0000001 "Vein internal to the eye. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005047", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0006106 name: cochlear canal namespace: uberon synonym: "cochlear canal" EXACT [BIRNLEX:2553] synonym: "spiral canal of cochlea" EXACT [BIRNLEX:2553] synonym: "spiral vessel" RELATED [MA:0003176] synonym: "wall of cochlea" EXACT [FMA:75371] xref: BIRNLEX:2553 xref: EMAPA:35801 xref: FMA:75371 xref: http://linkedlifedata.com/resource/umls/id/C0009198 xref: http://linkedlifedata.com/resource/umls/id/C0458767 xref: http://www.snomedbrowser.com/Codes/Details/279779009 xref: MA:0003176 xref: UMLS:C0009198 {source="BIRNLEX:2553"} xref: UMLS:C0458767 {source="BIRNLEX:2553"} relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0006203 name: conchal part of pinna namespace: uberon subset: pheno_slim synonym: "concha" BROAD [FMA:61006] synonym: "concha auriculae" EXACT LATIN [FMA:61006, FMA:TA] synonym: "concha of auricle" EXACT [FMA:61006] synonym: "concha of pinna" EXACT [FMA:61006] xref: FMA:61006 xref: http://linkedlifedata.com/resource/umls/id/C0229316 xref: NCIT:C32362 xref: UMLS:C0229316 {source="ncithesaurus:Concha"} relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0006206 name: iridocorneal angle namespace: uberon def: "Acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]." [MP:0004221] subset: pheno_slim synonym: "anterior chamber angle" EXACT [FMA:58577] xref: FMA:58577 xref: http://www.snomedbrowser.com/Codes/Details/244498000 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0003956 ! aqueous drainage system [Term] id: UBERON:0006208 name: auditory hillocks namespace: uberon def: "A collection of protruberances derived from pharyngeal arches 1 and 2 that develop into the folds of the pinna and gradually shift upwards and backwards to their final position on the head." [http://en.wikipedia.org/wiki/Pinna_(anatomy)#Development] subset: emapa_ehdaa2 synonym: "auditory hillock of Hiss" EXACT [] synonym: "auditory tubercles" RELATED INCONSISTENT [VHOG:0001364] synonym: "auricular hillock" RELATED [] synonym: "hillock of Hiss" RELATED [] xref: EHDAA2:0000155 xref: EHDAA:4685 xref: EMAPA:17280 xref: NCIT:C34110 xref: VHOG:0001364 relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0006230 name: extrinsic ocular pre-muscle mass namespace: uberon subset: emapa_ehdaa2 xref: EHDAA2:0000483 xref: EHDAA:2925 xref: EMAPA:17845 is_a: UBERON:0003314 ! eye mesenchyme relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye [Term] id: UBERON:0006248 name: incus pre-cartilage condensation namespace: uberon def: "A incus endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000813 xref: EHDAA:9024 xref: EMAPA:17825 xref: VHOG:0000957 is_a: UBERON:0015017 ! incus endochondral element is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element property_value: IAO:0000116 "in EHDAA2 this develops from both mandibular and maxillary mesenchyme. We have still to extend homology relationships from quadrate/incus to their ontogenic precursors (" xsd:string [Term] id: UBERON:0006253 name: embryonic intraretinal space namespace: uberon def: "The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina" [VHOG:0000534] subset: emapa_ehdaa2 synonym: "intraretinal space" EXACT [EHDAA2:0000889] synonym: "intraretinal space of optic cup" EXACT [EMAPA:16676] synonym: "intraretinal space of retina" EXACT [EMAPA:17170] synonym: "retina intraretinal space" EXACT [VHOG:0000534] xref: EHDAA2:0000889 xref: EHDAA:4761 xref: EMAPA:16676 xref: EMAPA:17170 xref: VHOG:0000534 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000001 "The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000534", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/intraretinal+space"} property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000534", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429"} [Term] id: UBERON:0006259 name: lens pit namespace: uberon def: "A pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]." [http://medical-dictionary.thefreedictionary.com/lens+pit] subset: emapa_ehdaa2 xref: EHDAA2:0000981 xref: EHDAA:3809 xref: EMAPA:16799 xref: http://linkedlifedata.com/resource/umls/id/C1517769 xref: NCIT:C34201 xref: UMLS:C1517769 {source="ncithesaurus:Lens_Pit"} xref: VHOG:0000806 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000965 ! lens of camera-type eye property_value: UBPROP:0000001 "A pitlike depression in the ectoderm of the lens placode where the primordial lens is developing. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000806", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lens+pit"} [Term] id: UBERON:0006262 name: malleus pre-cartilage condensation namespace: uberon def: "A malleus endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0001055 xref: EHDAA:9026 xref: EMAPA:17826 xref: VHOG:0000958 is_a: UBERON:0015018 ! malleus endochondral element is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element [Term] id: UBERON:0006266 name: nasolacrimal groove namespace: uberon def: "Groove between maxillary prominence and lateral nasal process." [http://en.wikipedia.org/wiki/Lacrimal_groove, http://www.indiana.edu/~anat550/hnanim/face/face.html] comment: On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct[WP] See also: oblique facial cleft subset: emapa_ehdaa2 synonym: "naso-lacrimal groove" EXACT [EMAPA:16679] synonym: "s. lacrimalis maxillae" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_groove] xref: EHDAA2:0001238 xref: EHDAA:4770 xref: EMAPA:16679 xref: FMA:300055 xref: http://linkedlifedata.com/resource/umls/id/C1513875 xref: Lacrimal:groove xref: NCIT:C34218 xref: UMLS:C1513875 {source="ncithesaurus:Nasolacrimal_Groove"} xref: VHOG:0001307 is_a: UBERON:0019306 ! nose epithelium property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png xsd:anyURI [Term] id: UBERON:0006273 name: otic pit namespace: uberon alt_id: UBERON:0009123 def: "the pair of depressions of thickened otic placode epithelium, that further develops into the otic vesicles" [ISBN:0-683-40008-8, MP:0011172] subset: emapa_ehdaa2 subset: pheno_slim synonym: "otic cup" EXACT [NCBIBook:NBK53175] xref: EHDAA2:0001336 xref: EHDAA:929 xref: EMAPA:16536 xref: FMA:302911 xref: NCIT:C34238 xref: Otic:pit xref: VHOG:0001147 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0003069 ! otic placode property_value: UBPROP:0000001 "A depression appearing in each otic placode, marking the beginnning of embryonic development of the internal ear. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001147", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Otic+pit"} [Term] id: UBERON:0006276 name: perioptic mesenchyme namespace: uberon subset: emapa_ehdaa2 xref: EHDAA:4751 xref: EMAPA:17167 xref: RETIRED_EHDAA2:0001444 relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006294 name: stapes pre-cartilage condensation namespace: uberon def: "A stapes endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "stapedial anlage" EXACT [https://doi.org/10.1111/j.1469-7580.2005.00441.x] xref: EHDAA2:0001910 xref: EHDAA:5699 xref: EMAPA:17827 xref: VHOG:0000956 is_a: UBERON:0015016 ! stapes endochondral element is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element relationship: part_of UBERON:0001686 {source="EHDAA2"} ! auditory ossicle bone property_value: UBPROP:0000011 "independent of the mesenchymal condensation that will form the otic capsule" xsd:string [Term] id: UBERON:0006311 name: chamber of eyeball namespace: uberon def: "A segment of the eyeball that is filled with refractive media" [http://orcid.org/0000-0002-6601-2165] synonym: "chamber of eye" RELATED [BTO:0002085] synonym: "eye chamber" EXACT [MA:0002459] synonym: "eyeball chamber" EXACT [FMA:58071] xref: BTO:0002085 xref: EMAPA:37529 {source="MA:th"} xref: FMA:58071 xref: http://linkedlifedata.com/resource/umls/id/C0459556 xref: http://www.snomedbrowser.com/Codes/Details/280540004 xref: MA:0002459 xref: NCIT:C32301 xref: UMLS:C0459556 {source="ncithesaurus:Chamber_of_the_Eye"} relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0006312 name: ocular refractive media namespace: uberon def: "Body substance in a liquid or semi-solid state in the eyeball which serves to refract light." [http://orcid.org/0000-0002-6601-2165] xref: MA:0001911 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000019 ! camera-type eye property_value: UBPROP:0000009 "ocular refraction" xsd:string [Term] id: UBERON:0006318 name: orbitalis muscle namespace: uberon def: "An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion." [http://en.wikipedia.org/wiki/Orbitalis_muscle] synonym: "musculus orbitalis" EXACT LATIN [FMA:49034, FMA:TA] synonym: "musculus orbitalis" RELATED LATIN [http://en.wikipedia.org/wiki/Orbitalis_muscle] synonym: "orbital muscle" EXACT [FMA:49034] synonym: "orbital muscle of muller" EXACT [FMA:49034] synonym: "orbitalis" EXACT [FMA:49034] synonym: "orbitalis" RELATED [http://en.wikipedia.org/wiki/Orbitalis_muscle] xref: EMAPA:37691 {source="MA:th"} xref: FMA:49034 xref: http://linkedlifedata.com/resource/umls/id/C0229105 xref: http://www.snomedbrowser.com/Codes/Details/368790005 xref: MA:0001274 xref: NCIT:C52800 xref: Orbitalis:muscle xref: UMLS:C0229105 {source="ncithesaurus:Orbitalis_Muscle"} is_a: UBERON:0004277 ! eye muscle property_value: UBPROP:0000012 "subclass of 'muscle layer' in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0006320 name: inferior oblique extraocular muscle namespace: uberon def: "thin, narrow muscle placed near the anterior margin of the floor of the orbit." [http://en.wikipedia.org/wiki/Inferior_oblique_muscle] comment: Taxon notes (via VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 subset: vertebrate_core synonym: "inferior oblique" EXACT [FMA:49040] synonym: "inferior oblique muscle" EXACT [] synonym: "m. obliquus inferior" EXACT [] synonym: "musculus obliquus inferior" EXACT [AAO:0010117] synonym: "musculus obliquus inferior bulbi" EXACT [http://en.wikipedia.org/wiki/Inferior_oblique_muscle] synonym: "musculus obliquus inferior bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_oblique_muscle] synonym: "obliquus inferior" EXACT [FMA:49040] synonym: "obliquus oculi inferior" EXACT [http://en.wikipedia.org/wiki/Inferior_oblique_muscle] synonym: "ventral oblique extraocular muscle" EXACT [VHOG:0001132] synonym: "ventral oblique extraocular muscles" RELATED [VHOG:0001132] xref: AAO:0010117 xref: FMA:49040 xref: http://en.wikipedia.org/wiki/Inferior_oblique_muscle xref: http://linkedlifedata.com/resource/umls/id/C0582817 xref: http://www.snomedbrowser.com/Codes/Details/181156006 xref: MA:0001276 xref: NCIT:C32783 xref: TAO:0000861 xref: UMLS:C0582817 {source="ncithesaurus:Inferior_Oblique_Muscle"} xref: VHOG:0001132 xref: ZFA:0000861 is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001132", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331"} [Term] id: UBERON:0006321 name: superior oblique extraocular muscle namespace: uberon def: "The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve)." [http://en.wikipedia.org/wiki/Superior_oblique_muscle] subset: vertebrate_core synonym: "dorsal oblique extraocular muscle" EXACT [VHOG:0001131] synonym: "dorsal oblique extraocular muscles" RELATED [VHOG:0001131] synonym: "M. obliquus superior" RELATED [http://en.wikipedia.org/wiki/Superior_oblique_muscle] synonym: "musculus obliquus superior" EXACT [AAO:0010119] synonym: "musculus obliquus superior bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_oblique_muscle] synonym: "obliquus oculi superior" RELATED [http://en.wikipedia.org/wiki/Superior_oblique_muscle] synonym: "obliquus superior" EXACT [FMA:49039] synonym: "superior oblique" EXACT [FMA:49039] synonym: "superior oblique muscle" EXACT [] xref: AAO:0010119 xref: FMA:49039 xref: http://en.wikipedia.org/wiki/Superior_oblique_muscle xref: http://linkedlifedata.com/resource/umls/id/C0582816 xref: http://www.snomedbrowser.com/Codes/Details/181155005 xref: MA:0001277 xref: NCIT:C33688 xref: TAO:0000738 xref: UMLS:C0582816 {source="ncithesaurus:Superior_Oblique_Muscle"} xref: VHOG:0001131 xref: ZFA:0000738 is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI property_value: UBPROP:0000001 "Cranial nerve IV innervated; dorsal in the obliquus group.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010119", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001131", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331"} [Term] id: UBERON:0006322 name: inferior rectus extraocular muscle namespace: uberon def: "A muscle in the orbit that depresses, adducts, and helps extort (rotate laterally) the eye. The inferior rectus muscle is the only muscle that is capable of depressing the pupil when it is in a fully abducted position." [http://en.wikipedia.org/wiki/Inferior_rectus_muscle] subset: vertebrate_core synonym: "inferior rectus" EXACT [FMA:49036] synonym: "inferior rectus muscle" EXACT [] synonym: "m. rectus inferior" EXACT [] synonym: "musculus rectus inferior" EXACT [AAO:0010101] synonym: "musculus rectus inferior bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Inferior_rectus_muscle] synonym: "ventral recti" RELATED PLURAL [TAO:0000457] synonym: "ventral rectus" RELATED [TAO:0000457] synonym: "ventral rectus extraocular muscle" EXACT [VHOG:0001130] xref: AAO:0010101 xref: FMA:49036 xref: http://en.wikipedia.org/wiki/Inferior_rectus_muscle xref: http://linkedlifedata.com/resource/umls/id/C0582819 xref: http://www.snomedbrowser.com/Codes/Details/181154009 xref: MA:0001279 xref: NCIT:C32790 xref: TAO:0000457 xref: UMLS:C0582819 {source="ncithesaurus:Inferior_Rectus_Muscle"} xref: VHOG:0001130 xref: ZFA:0000457 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001130", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331"} [Term] id: UBERON:0006323 name: superior rectus extraocular muscle namespace: uberon def: "The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction." [http://en.wikipedia.org/wiki/Superior_rectus_muscle] subset: pheno_slim subset: vertebrate_core synonym: "dorsal recti" RELATED PLURAL [ZFA:0000345] synonym: "dorsal rectus" RELATED [TAO:0000345] synonym: "dorsal rectus extraocular muscle" EXACT [VHOG:0001128] synonym: "m. rectus superior" EXACT [] synonym: "musculus rectus superior" EXACT [AAO:0010099] synonym: "musculus rectus superior bulbi" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_rectus_muscle] synonym: "superior rectus" EXACT [FMA:49035] synonym: "superior rectus muscle" EXACT [] xref: AAO:0010099 xref: FMA:49035 xref: http://en.wikipedia.org/wiki/Superior_rectus_muscle xref: http://linkedlifedata.com/resource/umls/id/C0582818 xref: http://www.snomedbrowser.com/Codes/Details/181153003 xref: MA:0001282 xref: NCIT:C33694 xref: TAO:0000345 xref: UMLS:C0582818 {source="ncithesaurus:Superior_Rectus_Muscle"} xref: VHOG:0001128 xref: ZFA:0000345 is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001128", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331"} [Term] id: UBERON:0006330 name: anterior lingual gland namespace: uberon def: "the small glands located near the apex of the tongue on either side of the frenulum" [ISBN:0-683-40008-8, MP:0009518] subset: pheno_slim synonym: "anterior lingual salivary gland" EXACT [FMA:59796] synonym: "Bauhin's glands" EXACT [http://en.wikipedia.org/wiki/Anterior_lingual_glands] synonym: "Blandin's glands" EXACT [http://en.wikipedia.org/wiki/Anterior_lingual_glands] synonym: "lingual salivary gland" EXACT [FMA:59796] synonym: "Nuhn's glands" EXACT [http://en.wikipedia.org/wiki/Anterior_lingual_glands] xref: FMA:59796 xref: http://en.wikipedia.org/wiki/Anterior_lingual_glands xref: http://linkedlifedata.com/resource/umls/id/C0930558 xref: http://www.snomedbrowser.com/Codes/Details/362179003 xref: MA:0002701 xref: NCIT:C32987 xref: UMLS:C0930558 {source="ncithesaurus:Lingual_Salivary_Gland"} is_a: UBERON:0003409 ! gland of tongue [Term] id: UBERON:0006332 name: nasal capsule namespace: uberon def: "An embryonic cartilaginous frame, the nasal capsule, an evolutionary-conserved structure composed of ventral and dorsal components: the mesethmoid and ectethmoid cartilages, respectively.[PMID]." [http://www.ncbi.nlm.nih.gov/pubmed/21270050] subset: pheno_slim subset: vertebrate_core synonym: "cartilaginous nasal capsule" EXACT [] synonym: "tripartite nasal capsule" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/25312359] xref: AAO:0000313 xref: EMAPA:17852 xref: FMA:320527 xref: MA:0000283 xref: TAO:0002035 xref: ZFA:0005507 is_a: UBERON:0001823 ! nasal cartilage property_value: IAO:0000116 "consider splitting this class. Developing cartilage in mammals?" xsd:string {source="ZFA"} property_value: UBPROP:0000001 "Multi-tissue structure that is the connective tissue sheath that surrounds, except for external opening(s) in adult, the olfactory epithelium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002035", ontology="TAO", source="TAO:wd"} property_value: UBPROP:0000001 "Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000313", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000005 "Development information from Brian Hall, Bones and Cartilage: Developmental Skeletal Biology.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0002035", ontology="TAO", source="Curator"} property_value: UBPROP:0000008 "by the process of folding of the cartilaginous nasal capsule during fetal development, outpouchings of the main nasal chamber become enlarged (primary pneumatization) (Witmer, 1999; Macrini, 2014). The resulting paranasal recesses may or may not expand farther into the bodies of facial and basicranial bones (secondary pneumatization). Histori- cally, the result of these processes, paranasal recesses and sinuses, respectively, have not always been distin- guished (see further discussion in Rossie, 2006). Yet, in either case the nasal fossa becomes subdivided into a central nasal chamber and more peripheral paranasal chambers (Smith et al., 2014; Curtis and Van Valken- burgh, 2014)[PMID:25312359]" xsd:string property_value: UBPROP:0000008 "In Aves: The nasal capsule is dorsoventrally divided into two parts: the upper part, the ectethmoid, serves olfaction and is composed of the lamina cribosa, the crista galli apophysis and the conchae. The lower part, the mesethmoid, is a thick cartilage bar extending from the corpus sphenoidalis to the rostral extremity of the nose (Fig. 1A-B). In the avian embryo, the mesethmoid constitutes the cartilage primordium of the upper beak." xsd:string property_value: UBPROP:0000008 "In avians, the mesethmoid supports upper beak formation, whereas the ectethmoid comprises elements of the olfactory system, including the lamina cribosa, the crista galli apophysis and the conchae." xsd:string property_value: UBPROP:0000008 "In most mammals, the nasal capsule remains unossified, except in mammals where the ethmoid portion ossifies to form the turbinates" xsd:string {source="ISBN:0073040584"} property_value: UBPROP:0000012 "Connective tissue sheath in TAO. Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium[AAO]. Cartilaginous envelope containing the nasal organ[FishBase]" xsd:string {external_ontology="TAO"} [Term] id: UBERON:0006334 name: posterior lateral line namespace: uberon def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFA:0000944] subset: dubious_grouping subset: efo_slim synonym: "pll" EXACT [ZFA:0000944] xref: AAO:0011024 xref: EFO:0003595 xref: HBA:4413 xref: TAO:0000944 xref: XAO:0000465 xref: ZFA:0000944 is_a: UBERON:0010202 ! lateral line property_value: IAO:0000116 "check XAO/AAO" xsd:string property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000944", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: develops_from posterior lateral line primordium (TAO:0001157)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000944", ontology="TAO"} property_value: UBPROP:0000002 "relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000944", ontology="TAO"} [Term] id: UBERON:0006345 name: stapedial artery namespace: uberon def: "A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]." [MP:0004665] subset: pheno_slim synonym: "stapedial" RELATED [EHDAA2:0001908] synonym: "stapedial artery temporary" EXACT [EHDAA2:0001908] xref: EHDAA2:0001908 xref: EMAPA:17313 xref: FMA:79390 xref: http://en.wikipedia.org/wiki/Stapedial_branch_of_posterior_auricular_artery xref: http://linkedlifedata.com/resource/umls/id/C1284048 xref: http://www.snomedbrowser.com/Codes/Details/361518009 xref: MA:0002044 xref: NCIT:C34304 xref: UMLS:C1284048 {source="ncithesaurus:Stapedial_Artery"} relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear [Term] id: UBERON:0006360 name: tongue intermolar eminence namespace: uberon def: "A large swelling on the dorsal surface of the tongue at the junction between the anterior two-thirds and posterior one-third." [ISBN:0080573371] synonym: "intermolar eminence" EXACT [MA:0001590] xref: EMAPA:18273 xref: MA:0001590 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0009471 ! dorsum of tongue [Term] id: UBERON:0006495 name: osseus cochlear canal namespace: uberon comment: Design pattern note: check if conforms to foramen pattern subset: pheno_slim synonym: "osseous cochlear canal" EXACT [FMA:75666] xref: EMAPA:35621 xref: FMA:75666 xref: MA:0001183 relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea [Term] id: UBERON:0006496 name: external acoustic meatus osseus part namespace: uberon synonym: "bony external acoustic meatus" RELATED [FMA:61290] synonym: "osseous external acoustic meatus" EXACT [] synonym: "osseous external acoustic tube" EXACT [FMA:61290] synonym: "osseous part of external acoustic meatus" EXACT [FMA:61290] xref: EMAPA:37526 {source="MA:th"} xref: FMA:61290 xref: MA:0001235 relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0006531 name: oculomotor muscle namespace: uberon def: "The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris." [MESH:A02.633.567.700] xref: CALOHA:TS-0305 xref: http://linkedlifedata.com/resource/umls/id/C0028863 xref: MA:0002432 xref: MESH:D009801 xref: NCIT:C33199 xref: UMLS:C0028863 {source="ncithesaurus:Oculomotor_Muscle"} is_a: UBERON:0001601 {source="MA"} ! extra-ocular muscle property_value: UBPROP:0000012 "we follow MA in making this a subclass of extra-ocular muscle but the distinction is not clear" xsd:string {external_ontology="MA"} [Term] id: UBERON:0006532 name: oblique extraocular muscle namespace: uberon xref: FMA:312383 xref: MA:0001275 is_a: UBERON:0006531 ! oculomotor muscle [Term] id: UBERON:0006533 name: rectus extraocular muscle namespace: uberon subset: pheno_slim xref: FMA:312408 xref: MA:0001278 is_a: UBERON:0006531 ! oculomotor muscle [Term] id: UBERON:0006582 name: statolith namespace: uberon def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP,CJM]." [https://orcid.org/0000-0002-6601-2165] synonym: "calcareous statoliths" NARROW [] relationship: part_of UBERON:0006583 ! statocyst [Term] id: UBERON:0006583 name: statocyst namespace: uberon def: "A balance sensory receptor present in some aquatic invertebrates[WP]." [http://en.wikipedia.org/wiki/Statocyst] subset: organ_slim synonym: "balance organ" RELATED [] synonym: "statocyst organ" RELATED [] xref: http://en.wikipedia.org/wiki/Statocyst is_a: UBERON:0000020 ! sense organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Statocyst.jpg xsd:anyURI property_value: RO:0002174 NCBITaxon:110815 {source="Wikipedia"} property_value: RO:0002175 NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} property_value: RO:0002175 NCBITaxon:6073 property_value: RO:0002175 NCBITaxon:6544 property_value: RO:0002175 NCBITaxon:6657 property_value: RO:0002175 NCBITaxon:7586 [Term] id: UBERON:0006585 name: vestibular organ namespace: uberon def: "An organ that is part of a vestibular system." [OBOL:automatic] synonym: "balance organ" EXACT [https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2519 xref: http://linkedlifedata.com/resource/umls/id/C0682674 xref: UMLS:C0682674 {source="BIRNLEX:2519"} is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0004681 ! vestibular system [Term] id: UBERON:0006586 name: otolymph namespace: uberon alt_id: UBERON:0007793 def: "Transudate located within the osseus labyrinth. Otolymph can be further classified with respect to whether it is within the membranous labyrinth (endolymph) or outside the mebranous labyrinth (perilymph)." [http://orcid.org/0000-0002-6601-2165] synonym: "labyrinthine fluid" RELATED [MESH:A12.207.571] xref: EMAPA:36547 xref: GAID:1183 xref: http://linkedlifedata.com/resource/umls/id/C1518679 xref: MA:0002527 xref: MESH:A12.207.571 xref: NCIT:C33231 xref: UMLS:C1518679 {source="ncithesaurus:Otolymph"} relationship: part_of UBERON:0001844 {source="http://en.wikipedia.org/wiki/Perilymph"} ! cochlea property_value: UBPROP:0000001 "Fluids found within the osseous labyrinth (PERILYMPH) and the membranous labyrinth (ENDOLYMPH) of the inner ear. (From Gray's Anatomy, 30th American ed, p1328, 1332[MESH:A12.207.571])" xsd:string {source="MESH:A12.207.571"} [Term] id: UBERON:0006616 name: right external ear namespace: uberon def: "An external ear that is in the right side of a multicellular organism." [OBOL:automatic] subset: pheno_slim synonym: "right auricular region" BROAD [FMA:53643] xref: EMAPA:37361 {source="MA:th"} xref: FMA:53643 xref: http://www.snomedbrowser.com/Codes/Details/368567003 is_a: UBERON:0001691 ! external ear property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0006617 name: left external ear namespace: uberon def: "An external ear that is in the left side of a multicellular organism." [OBOL:automatic] subset: pheno_slim synonym: "left auricular region" BROAD [FMA:53644] xref: EMAPA:37360 {source="MA:th"} xref: FMA:53644 xref: http://www.snomedbrowser.com/Codes/Details/368589004 is_a: UBERON:0001691 ! external ear property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0006688 name: sublingual caruncle namespace: uberon def: "The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity." [http://en.wikipedia.org/wiki/Sublingual_caruncle] synonym: "caruncula sublingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Sublingual_caruncle] xref: EMAPA:18961 xref: FMA:77273 xref: http://www.snomedbrowser.com/Codes/Details/85139009 xref: Sublingual:caruncle is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 ! tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png xsd:anyURI [Term] id: UBERON:0006689 name: frenulum of tongue namespace: uberon def: "A small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [MGI:anna] subset: pheno_slim synonym: "frenulum" BROAD [] synonym: "frenulum linguae" EXACT LATIN [http://en.wikipedia.org/wiki/Frenulum_of_tongue] synonym: "frenulum linguae" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue] synonym: "frenulum linguæ" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue] synonym: "frenulum of the tongue" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue] synonym: "lingual frenulum" EXACT [http://en.wikipedia.org/wiki/Frenulum_of_tongue] synonym: "lingual frenum" RELATED [http://en.wikipedia.org/wiki/Frenulum_of_tongue] synonym: "tongue frenulum" EXACT [FMA:54659] xref: EMAPA:18656 xref: FMA:54659 xref: http://en.wikipedia.org/wiki/Frenulum_of_tongue xref: http://linkedlifedata.com/resource/umls/id/C2339893 xref: http://www.snomedbrowser.com/Codes/Details/264113009 xref: NCIT:C87076 xref: UMLS:C2339893 {source="ncithesaurus:Frenulum"} is_a: UBERON:0005020 ! mucosa of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png xsd:anyURI [Term] id: UBERON:0006699 name: foramen cecum of tongue namespace: uberon def: "The median pit on the dorsum of the posterior part of the tongue, from which the limbs of a V-shaped furrow run forward and outward; the foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland" [https://github.com/obophenotype/uberon/issues/281, MP:0013234] subset: pheno_slim synonym: "blind foramen of tongue" EXACT [MP:0013234] synonym: "cecal foramen of tongue" EXACT [MP:0013234] synonym: "ductus lingualis" EXACT [MP:0013234] synonym: "f. caecum linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Foramen_cecum_(tongue)] synonym: "foramen caecum linguae" EXACT LATIN [http://en.wikipedia.org/wiki/Foramen_cecum_(tongue)] synonym: "foramen cecum of tongue" EXACT [FMA:54828] synonym: "foramen of Morgagni" EXACT [FMA:54828] synonym: "Morand's foramen" EXACT [FMA:54828] synonym: "Morgagni foramen" EXACT [MP:0013234] xref: EMAPA:17069 xref: FMA:54828 xref: http://en.wikipedia.org/wiki/Foramen_cecum_(tongue) xref: http://www.snomedbrowser.com/Codes/Details/368738001 xref: MA:0000725 relationship: part_of UBERON:0003357 {source="EHDAA2"} ! epithelium of tongue relationship: part_of UBERON:0009471 ! dorsum of tongue property_value: depicted:by Foramen:caecum.png xsd:anyURI property_value: IAO:0000116 "consider merging with FC of thyroid" xsd:string [Term] id: UBERON:0006722 name: manubrium of malleus namespace: uberon def: "The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane." [http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus] subset: pheno_slim synonym: "handle of malleus" RELATED [MA:0002985] synonym: "malleal manubrium" RELATED [MA:0002985] synonym: "malleus handle" EXACT [FMA:52760] synonym: "malleus handle" RELATED [MA:0002985] synonym: "malleus manubrium" RELATED [MA:0002985] synonym: "manubrium mallei" RELATED [MA:0002985] synonym: "manubrium of malleus" EXACT [FMA:52760] synonym: "manubrium of malleus" RELATED [MA:0002985] xref: FMA:52760 xref: http://www.snomedbrowser.com/Codes/Details/264091009 xref: MA:0002985 relationship: part_of UBERON:0001689 ! malleus bone property_value: UBPROP:0000008 "Conical in shape, with the cone extending inwards (e.g. mammals) or outwards (e.g. in birds)" xsd:string {source="me:saf.html"} [Term] id: UBERON:0006723 name: cochlear modiolus namespace: uberon def: "the central cone shaped core of spongy bone about which turns the spiral canal" [ISBN:0-683-40008-8, MGI:anna, MP:0003309] subset: organ_slim subset: pheno_slim synonym: "cochlea modiolus" EXACT [FMA:61278] synonym: "columella cochleae" RELATED [BTO:0001693] synonym: "modiolus" BROAD [MA:0001182] synonym: "modiolus cochleae" EXACT LATIN [FMA:61278, FMA:TA] synonym: "modiolus of cochlea" EXACT [FMA:61278] xref: BTO:0001693 xref: EMAPA:35575 xref: FMA:61278 xref: http://linkedlifedata.com/resource/umls/id/C0229503 xref: http://www.snomedbrowser.com/Codes/Details/361314007 xref: MA:0001182 xref: Modiolus:(cochlea) xref: NCIT:C33135 xref: UMLS:C0229503 {source="ncithesaurus:Modiolus"} relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI [Term] id: UBERON:0006724 name: osseus spiral lamina namespace: uberon def: "The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani." [http://en.wikipedia.org/wiki/Osseous_spiral_lamina] synonym: "lamina modioli cochleae" EXACT LATIN [FMA:77710, FMA:TA] synonym: "lamina of modiolus cochleae" EXACT [FMA:77710] synonym: "lamina of modiolus of cochlea" EXACT [FMA:77710] synonym: "osseous spiral lamina" EXACT [] synonym: "osseous spiral lamina of cochlea" EXACT [FMA:77710] synonym: "spiral lamina" RELATED [MESH:A09.246.631.246.930] synonym: "spiral lamina of modiolus" EXACT [] xref: EMAPA:35622 xref: FMA:77710 xref: http://en.wikipedia.org/wiki/Osseous_spiral_lamina xref: http://www.snomedbrowser.com/Codes/Details/361315008 xref: MA:0001184 xref: MESH:D013137 relationship: part_of UBERON:0006723 {source="FMA"} ! cochlear modiolus [Term] id: UBERON:0006725 name: spiral ligament namespace: uberon alt_id: UBERON:0028186 def: "A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis." [http://en.wikipedia.org/wiki/Spiral_ligament, https://github.com/obophenotype/mouse-anatomy-ontology/issues/71] subset: pheno_slim synonym: "ligamentum spirale ductus cochlearis" EXACT LATIN [http://en.wikipedia.org/wiki/Spiral_ligament] synonym: "spiral cochlear ligament" EXACT LATIN [] synonym: "spiral ligament of cochlea" EXACT [BIRNLEX:2524] synonym: "spiral ligament of cochlear duct" EXACT [FMA:77834] xref: BIRNLEX:2524 xref: EMAPA:35798 xref: FMA:77834 xref: http://linkedlifedata.com/resource/umls/id/C0229477 xref: http://www.snomedbrowser.com/Codes/Details/279840005 xref: MA:0001192 xref: MESH:D055493 xref: Spiral:ligament relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth property_value: UBPROP:0000012 "this is not classified as a ligament in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0006726 name: outer canthus namespace: uberon def: "A corner of the outer (lateral) part of an eye." [http://orcid.org/0000-0002-6601-2165] comment: see also FMA:59321 synonym: "lateral angle of eye" RELATED [FMA:59321] synonym: "lateral canthus" RELATED [MA:0001264] synonym: "lateral canthus of eye" EXACT [FMA:59321] synonym: "lateral palpebral commissure" EXACT [FMA:59315] synonym: "outer canthi" RELATED PLURAL [] synonym: "temporal canthus" RELATED [] xref: EHDAA2:0000910 xref: EHDAA:9039 xref: EMAPA:37458 {source="MA:th"} xref: FMA:59315 xref: http://linkedlifedata.com/resource/umls/id/C1711189 xref: http://www.snomedbrowser.com/Codes/Details/362525004 xref: MA:0001264 xref: NCIT:C49597 xref: UMLS:C1711189 {source="ncithesaurus:Outer_Canthus"} xref: VHOG:0001571 is_a: UBERON:0006742 ! canthus property_value: UBPROP:0000001 "The angle at the end of the palpebral fissure, the slit between the eyelids, close to the temporal region of the skull. [ISBN:0124020607, p.263][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001571", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] id: UBERON:0006742 name: canthus namespace: uberon def: "A canthus is a corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface." [http://en.wikipedia.org/wiki/Canthus] synonym: "angle of eye" RELATED [FMA:59222] synonym: "bicanthal" RELATED [http://en.wikipedia.org/wiki/Canthus] synonym: "bicanthal plane" RELATED [http://en.wikipedia.org/wiki/Canthus] synonym: "canthi" RELATED PLURAL [http://en.wikipedia.org/wiki/Canthus] synonym: "canthoplasty" RELATED [http://en.wikipedia.org/wiki/Canthus] synonym: "canthorum" RELATED [http://en.wikipedia.org/wiki/Canthus] synonym: "canthus (anatomy)" RELATED [http://en.wikipedia.org/wiki/Canthus] synonym: "canthus of eye" RELATED [FMA:59222] synonym: "palpebral commissure" EXACT [FMA:59222] xref: EMAPA:37457 {source="MA:th"} xref: FMA:59222 xref: http://en.wikipedia.org/wiki/Canthus xref: http://www.snomedbrowser.com/Codes/Details/181145006 relationship: part_of UBERON:0000019 ! camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png xsd:anyURI property_value: UBPROP:0000007 "canthal" xsd:string [Term] id: UBERON:0006761 name: corneo-scleral junction namespace: uberon def: "the edge of the cornea where it joins the sclera; the limbus is a common site for the occurrence of corneal epithelial neoplasm" [MP:0013477] comment: This location has parts such as blood vessels etc. See PMC2868485, http://www.ncbi.nlm.nih.gov/pubmed/2695343 subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "cornea limbus" EXACT [] synonym: "corneal limbus" EXACT [GAID:896] synonym: "corneal limbus" EXACT [FMA:58342] synonym: "corneal-scleral limbus" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/17051547] synonym: "corneoscleral junction" EXACT [GAID:896] synonym: "limbus corneae" EXACT LATIN [http://en.wikipedia.org/wiki/Corneal_limbus] synonym: "limbus corneae" RELATED LATIN [http://en.wikipedia.org/wiki/Corneal_limbus] synonym: "sclerocorneal junction" EXACT [FMA:58342] synonym: "sclerocorneal limbus" EXACT [GAID:896] xref: Corneal:limbus xref: EFO:0001403 xref: EMAPA:37835 {source="MA:th"} xref: FMA:58342 xref: GAID:896 xref: http://www.snomedbrowser.com/Codes/Details/63716004 xref: MESH:D016850 xref: ZFA:0005570 relationship: part_of UBERON:0000019 ! camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3d/Limbus.png xsd:anyURI [Term] id: UBERON:0006762 name: suspensory ligament of lens namespace: uberon def: "The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]." [http://en.wikipedia.org/wiki/Zonule_of_Zinn] subset: pheno_slim subset: vertebrate_core synonym: "ciliary zonule" EXACT [FMA:58838] synonym: "ciliary zonule" RELATED [http://en.wikipedia.org/wiki/Zonule_of_Zinn] synonym: "suspensory ligament of the lens" RELATED [http://en.wikipedia.org/wiki/Zonule_of_Zinn] synonym: "Zinn's membrane" EXACT [FMA:58838] synonym: "zonula" RELATED [http://en.wikipedia.org/wiki/Zonule_of_Zinn] synonym: "zonula ciliaris" RELATED [http://en.wikipedia.org/wiki/Zonule_of_Zinn] synonym: "zonula ciliaris" RELATED LATIN [http://en.wikipedia.org/wiki/Zonule_of_Zinn] synonym: "zonular fiber" RELATED [http://en.wikipedia.org/wiki/Zonule_of_Zinn] synonym: "zonule" RELATED [http://en.wikipedia.org/wiki/Zonule_of_Zinn] synonym: "zonule of Zinn" EXACT [FMA:58838] synonym: "zonules" EXACT PLURAL [ZFA:0005573] xref: FMA:58838 xref: http://en.wikipedia.org/wiki/Zonule_of_Zinn xref: http://www.snomedbrowser.com/Codes/Details/362524000 xref: ZFA:0005573 relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI [Term] id: UBERON:0006763 name: epithelium of conjunctiva namespace: uberon def: "Layer of nonkeratinized squamous epithelium lining the conjunctiva, overlying scleral tissue" [http://orcid.org/0000-0002-6601-2165] subset: efo_slim subset: pheno_slim synonym: "conjunctiva epithelium" EXACT [FMA:62131] synonym: "conjunctival epithelium" EXACT [BTO:0005131] xref: BTO:0005131 xref: EFO:0001916 xref: FMA:62131 xref: http://linkedlifedata.com/resource/umls/id/C1179037 xref: NCIT:C32365 xref: UMLS:C1179037 {source="ncithesaurus:Conjunctival_Epithelium"} is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001811 {source="BTO"} ! conjunctiva [Term] id: UBERON:0006813 name: nasal skeleton namespace: uberon def: "Structural framework that provides support to the nasal sacs and ducts." [AAO:0000320] subset: pheno_slim synonym: "skeleton of nose" EXACT [FMA:60116] xref: AAO:0000320 xref: FMA:60116 xref: http://www.snomedbrowser.com/Codes/Details/281486007 relationship: part_of UBERON:0000004 {source="FMA"} ! nose [Term] id: UBERON:0006837 name: tegmen tympani namespace: uberon def: "The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] ." [http://education.yahoo.com/reference/gray/subjects/subject/230] subset: dubious_grouping synonym: "crista parotica" RELATED HOMOLOGY [AAO:0000116] synonym: "crista prootica" RELATED HOMOLOGY [AAO:0000116, http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html] synonym: "paries tegmentalis cavi tympani" EXACT LATIN [FMA:56002, FMA:TA] synonym: "processus muscularis capsulae auditivae" RELATED [AAO:0000116] synonym: "processus squamosus" RELATED HOMOLOGY [AAO:0000116] synonym: "tegmental roof of tympanic cavity" EXACT [FMA:56002] synonym: "tegmental wall of tympanic cavity" EXACT [FMA:56002] xref: AAO:0000116 xref: FMA:56002 xref: http://en.wikipedia.org/wiki/Tegmental_wall_of_tympanic_cavity relationship: part_of UBERON:0001756 ! middle ear property_value: IAO:0000116 "TODO - check AAO; grouping is made on basis of related synonym. Crista parotica: seems to be the same as the crista prootica. However, since this lateral ridge of the otic capsule is frequently formed by the opisthotic, rather than the prootic, this may be a better name.; Crista prootica: a ledge or ridge which elaborates the dorsal surface of the prootic or, more generally, the roof of the otic capsule, laterally. The crista may extend posteriorly & laterally, continuous with the paroccipital process, and/or anteriorly or anteroventrally to protect cranial nerve foramina and form part of the fenestra ovalis/vestibuli. In basal tetrapodomorphs and tetrapods, the crista prootica forms the floor of the posttemporal fenestra. See The Prootic. In many tetrapods, the crista prootica is not ossified, or incompletely ossified. However, in frogs, the crista is the main strut joining the skull roofing bones (frontoparietals) with the squamosals. The crista prootica has a similarly expanded role in mammals where it forms an important part of the epitympanic recess and anchors the tympanohyal." xsd:string {source="http://www.palaeos.com"} [Term] id: UBERON:0006906 name: ala of nose namespace: uberon def: "The lateral surface parts of the external nose, inferiorly, surrounding the naris[EoM]." [http://en.wikipedia.org/wiki/Ala_of_nose, https://doi.org/10.1002/ajmg.a.32600] subset: pheno_slim synonym: "ala nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Ala_of_nose] synonym: "ala nasi" RELATED [http://en.wikipedia.org/wiki/Ala_of_nose] synonym: "ala of the nose" RELATED [http://en.wikipedia.org/wiki/Ala_of_nose] synonym: "nasal ala" EXACT [FMA:59519] synonym: "wing of nose" RELATED [http://en.wikipedia.org/wiki/Ala_of_nose] synonym: "wing of the nose" RELATED [http://en.wikipedia.org/wiki/Ala_of_nose] synonym: "wings of the nose" RELATED [http://en.wikipedia.org/wiki/Ala_of_nose] xref: FMA:59519 xref: http://en.wikipedia.org/wiki/Ala_of_nose xref: http://www.snomedbrowser.com/Codes/Details/361345006 relationship: part_of UBERON:0007827 ! external nose property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI [Term] id: UBERON:0006916 name: non-keratinized epithelium of tongue namespace: uberon def: "A non-keratinized stratified squamous epithelium that is part of a tongue." [OBOL:automatic] xref: FMA:62130 is_a: UBERON:0006919 ! tongue squamous epithelium [Term] id: UBERON:0006918 name: parakeratinized epithelium of tongue namespace: uberon def: "A parakeratinized epithelium that is part of a tongue." [OBOL:automatic] synonym: "tongue parakeratinized epithelium" EXACT [] xref: FMA:74908 is_a: UBERON:0003357 ! epithelium of tongue [Term] id: UBERON:0006919 name: tongue squamous epithelium namespace: uberon def: "A squamous epithelium that is part of a tongue." [OBOL:automatic] subset: pheno_slim synonym: "squamous epithelium of tongue" EXACT [OBOL:automatic] xref: MA:0002786 is_a: UBERON:0003357 ! epithelium of tongue relationship: part_of UBERON:0005020 ! mucosa of tongue property_value: UBPROP:0000012 "this is a singleton subclass of tongue epithelium in MA" xsd:string {external_ontology="MA"} [Term] id: UBERON:0006932 name: vestibular epithelium namespace: uberon def: "An epithelium that is part of a vestibular labyrinth." [OBOL:automatic] synonym: "epithelium of vestibular labyrinth" EXACT [OBOL:automatic] synonym: "inner ear vestibular component epithelium" EXACT [RETIRED_EHDAA2:0000834] synonym: "vestibular sensory epithelium" EXACT [FMA:75606] xref: BTO:0005581 xref: EMAPA:32884 xref: EMAPA:35921 xref: FMA:75606 xref: MA:0002892 xref: RETIRED_EHDAA2:0000834 is_a: UBERON:0006937 ! inner ear epithelium relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0006935 name: crista ampullaris neuroepithelium namespace: uberon def: "An epithelium that is part of a crista ampullaris." [OBOL:automatic] subset: pheno_slim synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636] xref: FMA:75636 xref: MA:0002870 is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium relationship: part_of UBERON:0004721 {source="MA"} ! crista ampullaris [Term] id: UBERON:0006937 name: inner ear epithelium namespace: uberon def: "the epithelial cell layer containing the sensory hair cells and their associated sensory nerve terminals" [MGI:csmith, MP:0003308] subset: pheno_slim xref: EMAPA:32883 xref: MA:0001189 is_a: UBERON:0015807 ! ear epithelium relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0006938 name: pinna surface epithelium namespace: uberon def: "An epithelium that is part of a pinna." [OBOL:automatic] xref: EHDAA2:0001470 xref: EHDAA:8983 xref: EMAPA:17592 xref: VHOG:0000632 is_a: UBERON:0015814 ! outer ear epithelium relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0007037 name: mechanosensory system namespace: uberon xref: BILA:0000142 is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0007163 name: superior nasal meatus namespace: uberon def: "The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha." [http://en.wikipedia.org/wiki/Superior_nasal_meatus] synonym: "meatus nasi superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_nasal_meatus] synonym: "superior meatus" RELATED [http://en.wikipedia.org/wiki/Superior_nasal_meatus] xref: EMAPA:19276 xref: FMA:53138 xref: FMA:57480 xref: http://en.wikipedia.org/wiki/Superior_nasal_meatus xref: http://www.snomedbrowser.com/Codes/Details/310213007 is_a: UBERON:0015216 ! nasal meatus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray196.png xsd:anyURI property_value: IAO:0000116 "TODO - check FMA" xsd:string [Term] id: UBERON:0007223 name: osseus cochlea namespace: uberon def: "The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve." [http://www.innerbody.com/image_nerv14/nerv175.html] subset: pheno_slim xref: EMAPA:35620 xref: MA:0000239 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001844 ! cochlea property_value: IAO:0000116 "TODO - check this. in MA, cochlea is not part of the bony labyrinth" xsd:string [Term] id: UBERON:0007227 name: superior vestibular nucleus namespace: uberon def: "The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus." [http://en.wikipedia.org/wiki/Superior_vestibular_nucleus] synonym: "Bechterew's nucleus" RELATED [http://en.wikipedia.org/wiki/Superior_vestibular_nucleus] synonym: "Bekhterevs nucleus" RELATED [BTO:0004372] synonym: "nucleus of Bechterew" EXACT [FMA:54617] synonym: "nucleus vestibularis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_vestibular_nucleus] xref: BAMS:SUV xref: BAMS:SuVe xref: BAMS:SVN xref: BM:Me-VS-VSS xref: BTO:0004372 xref: CALOHA:TS-2079 xref: DHBA:12452 xref: EV:0100257 xref: FMA:54617 xref: HBA:9701 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=715 xref: http://en.wikipedia.org/wiki/Superior_vestibular_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0228757 xref: MBA:217 xref: NCIT:C33703 xref: UMLS:C0228757 {source="ncithesaurus:Superior_Vestibular_Nucleus"} is_a: UBERON:0007228 ! vestibular nucleus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png xsd:anyURI [Term] id: UBERON:0007228 name: vestibular nucleus namespace: uberon def: "A cranial nucleus for the vestibular nerve. [WP,unvetted]." [http://en.wikipedia.org/wiki/Vestibular_nuclei, http://www.sciencedirect.com/science/article/pii/S0079612305510069, https://github.com/geneontology/go-ontology/issues/9028] comment: See comments for 'vestibular nuclear complex. synonym: "vestibular nucleus of acoustic nerve" EXACT [FMA:54602] synonym: "vestibular nucleus of eighth cranial nerve" EXACT [FMA:54602] synonym: "vestibular VIII nucleus" EXACT [MA:0001032] xref: CALOHA:TS-2078 xref: EMAPA:35923 xref: EV:0100254 xref: FMA:54602 xref: http://linkedlifedata.com/resource/umls/id/C0042600 xref: http://www.snomedbrowser.com/Codes/Details/362462004 xref: MA:0001032 xref: NCIT:C12821 xref: UMLS:C0042600 {source="ncithesaurus:Vestibular_Nucleus"} xref: Vestibular:nuclei relationship: part_of UBERON:0002673 ! vestibular nuclear complex property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png xsd:anyURI [Term] id: UBERON:0007230 name: lateral vestibular nucleus namespace: uberon def: "One of the nuclei comprising the vestibular nuclear complex. In some mammals, e.g., primates, it is further subdivided into subnuclei. It therefore differs in appearance and topology in different mammals." [NLX:144002] synonym: "Deiter's nucleus" EXACT [FMA:54614] synonym: "Deiters nucleus" RELATED [BTO:0004370] synonym: "Deiters' nucleus" EXACT [FMA:54614] synonym: "lateral nucleus of Deiters" EXACT [FMA:54614] synonym: "nucleus of Deiters" EXACT [FMA:54614] synonym: "nucleus vestibularis lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_vestibular_nucleus] xref: BAMS:LAV xref: BAMS:LVe xref: BAMS:LVN xref: BM:Me-VS-VSL xref: BTO:0004370 xref: DHBA:12449 xref: EMAPA:36643 xref: FMA:54614 xref: GAID:603 xref: HBA:9699 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=716 xref: http://en.wikipedia.org/wiki/Lateral_vestibular_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0011193 xref: http://www.snomedbrowser.com/Codes/Details/280176007 xref: MBA:209 xref: MESH:D003689 xref: NCIT:C32951 xref: NLX:144002 xref: UMLS:C0011193 {source="ncithesaurus:Lateral_Vestibular_Nucleus"} is_a: UBERON:0007228 ! vestibular nucleus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png xsd:anyURI [Term] id: UBERON:0007247 name: nucleus of superior olivary complex namespace: uberon def: "Any of the nuclei that comprise the superior olivary complex (superior olive). This includes both the primary nuclei such as the lateral and medial nuclei, as well as periolivary nuclei." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class subset: pheno_slim synonym: "superior olivary complex nucleus" EXACT [FMA:72246] xref: FMA:72246 xref: http://www.snomedbrowser.com/Codes/Details/369024009 relationship: part_of UBERON:0002128 ! superior olivary complex property_value: IAO:0000232 "this class exists largely for consistency with the FMA. It is defined trivially with respect to the SOC. The class may be removed in future." xsd:string [Term] id: UBERON:0007250 name: lingual tonsil namespace: uberon def: "the lymph tissue on the floor of the oropharyngeal passage, near the root of the tongue" [MGI:cwg, MP:0002385] subset: pheno_slim synonym: "lingual tonsillar tissue" EXACT [MA:0000773] synonym: "tonsilla lingualis" RELATED LATIN [http://en.wikipedia.org/wiki/Lingual_tonsils] xref: FMA:54836 xref: http://linkedlifedata.com/resource/umls/id/C0229871 xref: http://www.snomedbrowser.com/Codes/Details/276957006 xref: Lingual:tonsils xref: MA:0000773 xref: NCIT:C32988 xref: UMLS:C0229871 {source="ncithesaurus:Lingual_Tonsil"} relationship: part_of UBERON:0010033 ! posterior part of tongue property_value: depicted:by Illu04:tongue.jpg xsd:anyURI [Term] id: UBERON:0007274 name: crista of ampulla of anterior semicircular duct of membranous laybrinth namespace: uberon def: "A crista ampullaris neuroepithelium that is part of a anterior semicircular duct." [OBOL:automatic] subset: vertebrate_core synonym: "AC" RELATED [TAO:0000619] synonym: "anterior crista" RELATED [TAO:0000619] synonym: "anterior crista ampullaris" EXACT [ZFA:0000619] synonym: "anterior cristae" EXACT PLURAL [ZFA:0000619] synonym: "anterior semicircular canal sensory patch" EXACT [ZFA:0000619] synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000619] synonym: "rostral crista" EXACT [ZFA:0000619] synonym: "sensory patches" RELATED [TAO:0000619] xref: FMA:75610 xref: TAO:0000619 xref: XAO:0004137 xref: ZFA:0000619 is_a: UBERON:0003238 ! epithelium of superior semicircular canal is_a: UBERON:0006935 ! crista ampullaris neuroepithelium relationship: part_of UBERON:0001857 ! anterior semicircular duct property_value: IAO:0000116 "TODO - unvetted" xsd:string property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000619", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0007275 name: crista of ampulla of posterior semicircular duct of membranous laybrinth namespace: uberon def: "A crista ampullaris neuroepithelium that is part of a posterior semicircular duct." [OBOL:automatic] subset: vertebrate_core synonym: "caudal crista" EXACT [ZFA:0000566] synonym: "PC" RELATED [TAO:0000566] synonym: "posterior crista" RELATED [TAO:0000566] synonym: "posterior crista ampullaris" EXACT [ZFA:0000566] synonym: "posterior cristae" EXACT PLURAL [ZFA:0000566] synonym: "posterior semicircular canal sensory patch" EXACT [ZFA:0000566] synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000566] synonym: "sensory patches" RELATED [TAO:0000566] xref: FMA:75611 xref: TAO:0000566 xref: XAO:0004133 xref: ZFA:0000566 is_a: UBERON:0003239 ! epithelium of posterior semicircular canal is_a: UBERON:0006935 ! crista ampullaris neuroepithelium relationship: part_of UBERON:0001858 ! posterior semicircular duct property_value: IAO:0000116 "TODO - unvetted" xsd:string property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000566", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0007276 name: crista of ampulla of lateral semicircular duct of membranous laybrinth namespace: uberon def: "A crista ampullaris neuroepithelium that is part of a lateral semicircular duct." [OBOL:automatic] subset: vertebrate_core synonym: "lateral crista" RELATED [TAO:0000166] synonym: "lateral crista ampullaris" EXACT [ZFA:0000166] synonym: "lateral cristae" EXACT PLURAL [ZFA:0000166] synonym: "lateral semicircular canal sensory patch" EXACT [ZFA:0000166] synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [ZFA:0000166] synonym: "LC" RELATED [TAO:0000166] synonym: "sensory patches" RELATED [TAO:0000166] xref: FMA:75612 xref: TAO:0000166 xref: ZFA:0000166 is_a: UBERON:0003240 ! epithelium of lateral semicircular canal is_a: UBERON:0006935 ! crista ampullaris neuroepithelium relationship: part_of UBERON:0001859 ! lateral semicircular duct property_value: IAO:0000116 "TODO - unvetted" xsd:string property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000166", ontology="TAO", source="ZFIN:curator"} [Term] id: UBERON:0007352 name: stria vascularis vasculature namespace: uberon def: "blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368] synonym: "stria vascularis blood vessel" RELATED [MP:0004368] synonym: "stria vascularis blood vessels" EXACT [] is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct [Term] id: UBERON:0007354 name: cartilage of pharyngotympanic tube namespace: uberon def: "A triangular plate of elastic fibrocartilage that forms the cartilage component of the pharyngotympanic tube." [http://en.wikipedia.org/wiki/Cartilage_of_pharyngotympanic_tube, http://orcid.org/0000-0002-6601-2165] synonym: "cartilage of auditory tube" EXACT [FMA:60096] synonym: "cartilage of eustachian tube" EXACT [FMA:60096] synonym: "cartilago tubae auditivae" EXACT LATIN [FMA:60096, FMA:TA] synonym: "cartilago tubae auditivae; cartilago tubae auditoriae" RELATED LATIN [http://en.wikipedia.org/wiki/Cartilage_of_pharyngotympanic_tube] synonym: "cartilago tubae auditoriae" EXACT LATIN [FMA:60096, FMA:TA] synonym: "pharyngotympanic tube cartilage" EXACT [FMA:60096] xref: FMA:60096 xref: http://en.wikipedia.org/wiki/Cartilage_of_pharyngotympanic_tube xref: http://www.snomedbrowser.com/Codes/Details/362565000 relationship: part_of UBERON:0002393 ! pharyngotympanic tube property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray915.png xsd:anyURI [Term] id: UBERON:0007355 name: bony part of pharyngotympanic tube namespace: uberon def: "The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion." [http://en.wikipedia.org/wiki/Bony_part_of_pharyngotympanic_tube] synonym: "bony part of auditory tube" EXACT [FMA:60057] synonym: "bony part of eustachian tube" EXACT [FMA:60057] synonym: "osseous portion" RELATED [http://en.wikipedia.org/wiki/Bony_part_of_pharyngotympanic_tube] synonym: "osseous portion of eustachian tube" EXACT [FMA:60057] synonym: "pars ossea (tuba auditiva)" EXACT [FMA:60057] synonym: "pars ossea (tuba auditoria)" EXACT [FMA:60057] synonym: "pars ossea tubae auditivae" RELATED LATIN [http://en.wikipedia.org/wiki/Bony_part_of_pharyngotympanic_tube] xref: FMA:60057 xref: http://en.wikipedia.org/wiki/Bony_part_of_pharyngotympanic_tube xref: http://www.snomedbrowser.com/Codes/Details/362563007 relationship: part_of UBERON:0002393 ! pharyngotympanic tube property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png xsd:anyURI [Term] id: UBERON:0007367 name: surface of tongue namespace: uberon def: "An anatomical surface that is part of a tongue." [OBOL:automatic] synonym: "tongue surface" EXACT [FMA:54647] xref: FMA:54647 xref: http://www.snomedbrowser.com/Codes/Details/314870004 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0007371 name: superior surface of tongue namespace: uberon def: "The upper (superior) side of the tongue." [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal surface of tongue" EXACT [FMA:54646] xref: FMA:54646 is_a: UBERON:0007367 ! surface of tongue property_value: IAO:0000116 "check superior/dorsal" xsd:string [Term] id: UBERON:0007373 name: inferior surface of tongue namespace: uberon def: "The lower (inferior) side of the tongue." [http://orcid.org/0000-0002-6601-2165] synonym: "ventral surface of tongue" EXACT [FMA:54648] synonym: "ventrum linguae" EXACT [] xref: FMA:54648 xref: http://www.snomedbrowser.com/Codes/Details/362100003 is_a: UBERON:0007367 ! surface of tongue property_value: IAO:0000116 "check inferior/ventral" xsd:string [Term] id: UBERON:0007374 name: incus cartilage element namespace: uberon def: "A incus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] xref: EMAPA:18228 is_a: UBERON:0015017 ! incus endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element [Term] id: UBERON:0007619 name: limiting membrane of retina namespace: uberon subset: grouping_class synonym: "retina lamina" EXACT [https://github.com/obophenotype/uberon/issues/52, MA:0001318] xref: http://www.snomedbrowser.com/Codes/Details/280667001 xref: MA:0001318 is_a: UBERON:0001781 {source="UBERON"} ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer property_value: UBPROP:0000012 "MA does treat internal/external limiting membranes as layers - these are classified as laminae. We do not follow this convention. However, we do following MA is grouping these terms together" xsd:string {external_ontology="MA"} [Term] id: UBERON:0007622 name: pecten oculi namespace: uberon def: "A comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body." [http://en.wikipedia.org/wiki/Pecten_oculi] comment: ventral optic cup derivative synonym: "pecten" BROAD [] xref: Pecten:oculi is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001776 ! optic choroid property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Birdeye.jpg/700px-Birdeye.jpg xsd:anyURI [Term] id: UBERON:0007625 name: pigment epithelium of eye namespace: uberon def: "epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200] subset: pheno_slim synonym: "eye pigment epithelium" RELATED [MESH:A09.371.670] xref: GAID:907 xref: MESH:D010857 is_a: UBERON:0019304 ! sensory organ epithelium relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0007633 name: nucleus of trapezoid body namespace: uberon def: "A nucleus embedded within the fibers of the trapezoid body." [http://en.wikipedia.org/wiki/Trapezoid_body, http://orcid.org/0000-0002-6601-2165] synonym: "nuclei of trapezoid body" RELATED [FMA:84023] synonym: "nucleus corporis trapezoidei" RELATED LATIN [NeuroNames:576] synonym: "nucleus of the trapezoid body" RELATED [BAMS:NTB] synonym: "nucleus of the trapezoid body" RELATED [BAMS:Tz] synonym: "nucleus trapezoidalis" RELATED LATIN [NeuroNames:576] synonym: "set of nuclei of trapezoid body" RELATED [FMA:84023] synonym: "trapezoid gray" RELATED [BIRNLEX:745] synonym: "trapezoid nuclear complex" EXACT [BIRNLEX:745] synonym: "trapezoid nuclei" RELATED [BIRNLEX:745] synonym: "Tz" BROAD ABBREVIATION [BIRNLEX:745, NIFSTD:NeuroNames_abbrevSource] xref: BAMS:NTB xref: BAMS:Tz xref: BIRNLEX:745 xref: BM:NTB xref: DHBA:12458 xref: EMAPA:35600 xref: FMA:84023 xref: HBA:9185 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=576 {source="BIRNLEX:745"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=576 xref: http://linkedlifedata.com/resource/umls/id/C0228436 xref: http://linkedlifedata.com/resource/umls/id/C1289449 xref: http://www.snomedbrowser.com/Codes/Details/362405000 xref: MA:0001018 xref: MBA:642 xref: UMLS:C0228436 {source="BIRNLEX:745"} xref: UMLS:C1289449 {source="BIRNLEX:745"} is_a: UBERON:0007247 ! nucleus of superior olivary complex [Term] id: UBERON:0007691 name: gustatory pore namespace: uberon def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project." [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore] synonym: "taste pore" EXACT [FMA:63589] xref: FMA:63589 xref: http://linkedlifedata.com/resource/umls/id/C0226971 xref: http://www.snomedbrowser.com/Codes/Details/368724008 xref: NCIT:C33738 xref: UMLS:C0226971 {source="ncithesaurus:Taste_Pore"} relationship: part_of UBERON:0001727 {source="FMA"} ! taste bud property_value: depicted:by Taste:bud.svg xsd:anyURI [Term] id: UBERON:0007770 name: osphradium namespace: uberon def: "The osphradium is the olfactory organ in certain molluscs, linked with the respiration organ. The main function of this is to test incoming water for silt and other possible food particles. It is used by all members of the Genus Conus." [BTO:0004995, http://en.wikipedia.org/wiki/Osphradium] subset: organ_slim xref: BTO:0004995 xref: http://en.wikipedia.org/wiki/Osphradium is_a: UBERON:0002268 {source="BTO"} ! olfactory organ [Term] id: UBERON:0007804 name: sclerotic ring namespace: uberon def: "Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]." [http://en.wikipedia.org/wiki/Sclerotic_ring] synonym: "scleral ring" EXACT [http://en.wikipedia.org/wiki/Sclerotic_ring] xref: Sclerotic:ring is_a: UBERON:0010290 {source="http://www.ncbi.nlm.nih.gov/pubmed/17051547"} ! scleral ossicle [Term] id: UBERON:0007818 name: major alar cartilage namespace: uberon def: "The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose." [http://en.wikipedia.org/wiki/Greater_alar_cartilage] synonym: "cartilago alaris major" EXACT [FMA:59504] synonym: "cartilago alaris major" RELATED LATIN [http://en.wikipedia.org/wiki/Greater_alar_cartilage] synonym: "greater alar cartilage" EXACT [FMA:59504] xref: FMA:59504 xref: http://en.wikipedia.org/wiki/Greater_alar_cartilage xref: http://www.snomedbrowser.com/Codes/Details/361928006 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI [Term] id: UBERON:0007819 name: minor alar cartilage namespace: uberon def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [http://en.wikipedia.org/wiki/Lesser_alar_cartilages] synonym: "cartilago alaris minor" RELATED LATIN [http://en.wikipedia.org/wiki/Lesser_alar_cartilages] synonym: "lesser alar cartilage" EXACT [FMA:59507] synonym: "lesser alar cartilages" RELATED PLURAL [] xref: FMA:59507 xref: http://en.wikipedia.org/wiki/Lesser_alar_cartilages xref: http://www.snomedbrowser.com/Codes/Details/368118006 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI [Term] id: UBERON:0007820 name: accessory nasal cartilage namespace: uberon def: "small cartilages of the nose connecting the greater alar cartilage and lateral nasal cartilage." [http://en.wikipedia.org/wiki/Accessory_nasal_cartilages] synonym: "cartilago nasi accessoriae" RELATED LATIN [http://en.wikipedia.org/wiki/Accessory_nasal_cartilage] xref: FMA:59510 xref: http://en.wikipedia.org/wiki/Accessory_nasal_cartilages xref: http://www.snomedbrowser.com/Codes/Details/368124000 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage [Term] id: UBERON:0007821 name: lateral nasal cartilage namespace: uberon def: "The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]." [http://en.wikipedia.org/wiki/Lateral_nasal_cartilage] synonym: "cartilago nasi lateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Lateral_nasal_cartilage] xref: FMA:59511 xref: http://en.wikipedia.org/wiki/Lateral_nasal_cartilage xref: http://www.snomedbrowser.com/Codes/Details/278944009 is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI [Term] id: UBERON:0007822 name: vomeronasal cartilage namespace: uberon def: "The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson[WP]." [http://en.wikipedia.org/wiki/Vomeronasal_cartilage] synonym: "cartilago vomeronasalis" RELATED LATIN [http://en.wikipedia.org/wiki/Vomeronasal_cartilage] synonym: "Huschke's cartilage" EXACT [FMA:59514] synonym: "Jacobson's cartilage" EXACT [FMA:59514] xref: FMA:59514 xref: http://www.snomedbrowser.com/Codes/Details/368123006 xref: Vomeronasal:cartilage is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png xsd:anyURI [Term] id: UBERON:0007825 name: reticular membrane of spiral organ namespace: uberon def: "A reticular lamina of epithelium that is part of a spiral organ of cochlea." [OBOL:automatic] synonym: "membrana reticularis organi spiralis" EXACT LATIN [FMA:77849, FMA:TA] synonym: "reticular lamina" BROAD [MA:0001194] synonym: "reticular lamina of spiral organ" EXACT [OBOL:automatic] synonym: "reticular lamina of spiral organ of cochlea" EXACT [OBOL:automatic] xref: EMAPA:35735 xref: FMA:77849 xref: MA:0001194 relationship: part_of UBERON:0002227 ! spiral organ of cochlea [Term] id: UBERON:0007827 name: external nose namespace: uberon def: "External part of the nose containing the external nares." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "nose" RELATED [] xref: EMAPA:37831 {source="MA:th"} xref: FMA:59515 xref: http://linkedlifedata.com/resource/umls/id/C0458561 xref: http://www.snomedbrowser.com/Codes/Details/265785009 xref: NCIT:C32566 xref: UMLS:C0458561 {source="ncithesaurus:External_Nose"} relationship: part_of UBERON:0000004 ! nose property_value: UBPROP:0000001 "Subdivision of face, the exterior of the nose, which consists of a root, dorsum, tip, columella, and right and left alae[FMA:59515]." xsd:string {source="FMA:59515"} [Term] id: UBERON:0007833 name: osseus semicircular canal namespace: uberon def: "the organ of balance composed of three long bony tubes of the labyrinth" [MESH:A09.246.631.663, MGI:cwg, MP:0002428] subset: pheno_slim synonym: "osseous semicircular canal" EXACT [OBOL:automatic] xref: MA:0000250 relationship: part_of UBERON:0001839 {source="MA"} ! bony labyrinth relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal property_value: IAO:0000116 "consider adding FMA:60186 ! Semicircular canal here, as it is part of the bony labyrinth" xsd:string [Term] id: UBERON:0008340 name: nasal bridge namespace: uberon def: "A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]." [http://en.wikipedia.org/wiki/Nasal_bridge, https://doi.org/10.1002/ajmg.a.32600] subset: pheno_slim xref: MA:0002874 xref: Nasal:bridge relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0008341 name: columella nasi namespace: uberon def: "The tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]." [https://doi.org/10.1002/ajmg.a.32600] subset: pheno_slim synonym: "columella" RELATED [FMA:59725] synonym: "columella of nose" EXACT [] synonym: "nasal columella" EXACT [] xref: EMAPA:37832 {source="MA:th"} xref: FMA:59725 xref: http://www.snomedbrowser.com/Codes/Details/361930008 relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] id: UBERON:0008522 name: nasal muscle namespace: uberon def: "Any muscle organ that is part of an nose." [OBOL:automatic] synonym: "muscle of nose" EXACT [OBOL:automatic] xref: FMA:73758 xref: http://linkedlifedata.com/resource/umls/id/C0224219 xref: http://www.snomedbrowser.com/Codes/Details/244730009 xref: NCIT:C33158 xref: UMLS:C0224219 {source="ncithesaurus:Nasal_Muscle"} relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0008582 name: superior longitudinal muscle of tongue namespace: uberon def: "A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis linguae superior" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] synonym: "longitudinalis linguæ superior" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] synonym: "musculus longitudinalis superior" EXACT [FMA:46693] synonym: "musculus longitudinalis superior linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] synonym: "superior lingualis" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] synonym: "superior longitudinal muscle" RELATED [http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue] xref: FMA:46693 xref: http://en.wikipedia.org/wiki/Superior_longitudinal_muscle_of_tongue xref: http://www.snomedbrowser.com/Codes/Details/244790006 is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/30/Musculuslongitudinalissuperiorlinguae.png xsd:anyURI [Term] id: UBERON:0008583 name: transverse muscle of tongue namespace: uberon def: "A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] synonym: "intrinsic tongue muscle transverse component" EXACT [MA:0002328] synonym: "musculus transversus linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] synonym: "transverse lingual muscle" EXACT [FMA:46695] synonym: "transverse muscle" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] synonym: "transversus linguae" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] synonym: "transversus linguæ" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] synonym: "transversus muscle" RELATED [http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue] xref: EMAPA:18281 xref: FMA:46695 xref: http://en.wikipedia.org/wiki/Transverse_muscle_of_tongue xref: http://linkedlifedata.com/resource/umls/id/C1708561 xref: http://www.snomedbrowser.com/Codes/Details/244792003 xref: MA:0002328 xref: NCIT:C52706 xref: UMLS:C1708561 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component"} is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/14/Musculustransversuslinguae.png xsd:anyURI [Term] id: UBERON:0008584 name: vertical muscle of tongue namespace: uberon def: "A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] synonym: "intrinsic tongue muscle vertical component" EXACT [MA:0002329] synonym: "musculus verticalis linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] synonym: "vertical lingual muscle" EXACT [FMA:46696] synonym: "vertical muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] synonym: "verticalis linguae" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] synonym: "verticalis linguae muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] synonym: "verticalis linguæ" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] synonym: "verticalis linguæ muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] synonym: "verticalis muscle" RELATED [http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue] xref: EMAPA:18282 xref: FMA:46696 xref: http://en.wikipedia.org/wiki/Vertical_muscle_of_tongue xref: http://linkedlifedata.com/resource/umls/id/C1708562 xref: http://www.snomedbrowser.com/Codes/Details/244793008 xref: MA:0002329 xref: NCIT:C52708 xref: UMLS:C1708562 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component"} is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray1020.png xsd:anyURI [Term] id: UBERON:0008588 name: procerus namespace: uberon def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [http://en.wikipedia.org/wiki/Procerus_muscle] synonym: "depressor glabellae" RELATED [http://en.wikipedia.org/wiki/Procerus_muscle] synonym: "depressor glabellae" RELATED LATIN [http://en.wikipedia.org/wiki/Procerus_muscle] synonym: "musculus procerus glabellae" RELATED LATIN [http://en.wikipedia.org/wiki/Procerus_muscle] synonym: "procerus muscle" RELATED [http://en.wikipedia.org/wiki/Procerus_muscle] synonym: "pyramidalis nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Procerus_muscle] synonym: "pyramidalis nasi" RELATED [http://en.wikipedia.org/wiki/Procerus_muscle] xref: FMA:46769 xref: http://www.snomedbrowser.com/Codes/Details/244731008 xref: Procerus:muscle is_a: UBERON:0008522 {source="FMA"} ! nasal muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/76/Procerus.png xsd:anyURI [Term] id: UBERON:0008589 name: depressor septi nasi namespace: uberon def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] synonym: "depressor alae nasi" RELATED [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] synonym: "depressor alæ nasi" RELATED [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] synonym: "depressor septi" EXACT [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] synonym: "depressor septi nasi muscle" RELATED [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] synonym: "musculus depressor septi nasi" RELATED LATIN [http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle] xref: FMA:46777 xref: http://en.wikipedia.org/wiki/Depressor_septi_nasi_muscle xref: http://www.snomedbrowser.com/Codes/Details/244733006 is_a: UBERON:0008522 {source="FMA"} ! nasal muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Musculusdepressorseptinasi.PNG xsd:anyURI [Term] id: UBERON:0008603 name: helicis major namespace: uberon def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [http://en.wikipedia.org/wiki/Helicis_major] synonym: "helicis major muscle" RELATED [] synonym: "musculus helicis major" EXACT LATIN [http://en.wikipedia.org/wiki/Helicis_major] xref: FMA:48968 xref: Helicis:major xref: http://www.snomedbrowser.com/Codes/Details/244764008 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI [Term] id: UBERON:0008604 name: helicis minor namespace: uberon def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [http://en.wikipedia.org/wiki/Helicis_minor] synonym: "helicis minor muscle" RELATED [] synonym: "musculus helicis minor" RELATED LATIN [http://en.wikipedia.org/wiki/Helicis_minor] xref: FMA:48971 xref: Helicis:minor xref: http://www.snomedbrowser.com/Codes/Details/244765009 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI [Term] id: UBERON:0008605 name: tragicus muscle namespace: uberon def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [http://en.wikipedia.org/wiki/Tragicus] synonym: "musculus tragicus" RELATED LATIN [http://en.wikipedia.org/wiki/Tragicus] synonym: "tragicus" EXACT [FMA:48974] synonym: "tragicus muscle" RELATED [] xref: FMA:48974 xref: http://en.wikipedia.org/wiki/Tragicus xref: http://www.snomedbrowser.com/Codes/Details/244766005 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI [Term] id: UBERON:0008606 name: antitragicus muscle namespace: uberon def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [http://en.wikipedia.org/wiki/Antitragicus] synonym: "antitragicus" EXACT [FMA:48980] synonym: "antitragicus muscle" RELATED [] synonym: "musculus antitragicus" RELATED LATIN [http://en.wikipedia.org/wiki/Antitragicus] xref: FMA:48980 xref: http://en.wikipedia.org/wiki/Antitragicus xref: http://www.snomedbrowser.com/Codes/Details/63899000 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/58/Musculusantitragicus.png xsd:anyURI [Term] id: UBERON:0008607 name: transverse muscle of auricle namespace: uberon def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle] synonym: "musculus transversus auriculae" RELATED LATIN [http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle] synonym: "transverse muscle of pinna" EXACT [FMA:48983] synonym: "transversus auriculae" EXACT [http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle] synonym: "transversus auricularis" EXACT [FMA:48983] xref: FMA:48983 xref: http://en.wikipedia.org/wiki/Transverse_muscle_of_auricle xref: http://www.snomedbrowser.com/Codes/Details/244767001 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI [Term] id: UBERON:0008608 name: oblique muscle of auricle namespace: uberon def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] synonym: "musculus obliquus auriculae" RELATED LATIN [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] synonym: "oblique muscle of pinna" EXACT [FMA:48986] synonym: "obliquus auriculae" EXACT [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] synonym: "obliquus auricularis muscle" EXACT [FMA:48986] synonym: "obliquus auriculæ" RELATED [http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle] xref: FMA:48986 xref: http://en.wikipedia.org/wiki/Oblique_muscle_of_auricle xref: http://www.snomedbrowser.com/Codes/Details/244768006 is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI [Term] id: UBERON:0008813 name: helicotrema namespace: uberon def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [http://en.wikipedia.org/wiki/Helicotrema] synonym: "apex of cochlea" BROAD [http://en.wikipedia.org/wiki/Cochlea] synonym: "cochlear apex" BROAD [http://en.wikipedia.org/wiki/Cochlea] synonym: "Scarpa's orifice" EXACT [FMA:61275] xref: FMA:61275 xref: http://en.wikipedia.org/wiki/Helicotrema xref: http://linkedlifedata.com/resource/umls/id/C0229512 xref: http://www.snomedbrowser.com/Codes/Details/279775003 xref: NCIT:C32723 xref: UMLS:C0229512 {source="ncithesaurus:Helicotrema"} relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI [Term] id: UBERON:0008831 name: inner spiral sulcus namespace: uberon def: "A concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "internal spiral sulcus" EXACT [MA:0001197] synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html] xref: EMAPA:35438 xref: FMA:77850 xref: http://en.wikipedia.org/wiki/Sulcus_spiralis_internus xref: MA:0001197 is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus [Term] id: UBERON:0008832 name: outer spiral sulcus namespace: uberon def: "A concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html] comment: part_of spiral sulcus in MA synonym: "external spiral sulcus" EXACT [MA:0001196] synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html] xref: EMAPA:35332 xref: FMA:77851 xref: http://en.wikipedia.org/wiki/Sulcus_spiralis_externus xref: MA:0001196 is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus [Term] id: UBERON:0008879 name: ligament of pinna namespace: uberon synonym: "auricular ligament" EXACT [MA:0001228] synonym: "ligament of auricle" EXACT [FMA:61035] synonym: "pinna ligament" EXACT [FMA:61035] xref: EMAPA:37434 {source="MA:th"} xref: FMA:61035 xref: http://www.snomedbrowser.com/Codes/Details/362548009 xref: MA:0001228 relationship: part_of UBERON:0001757 {source="MA"} ! pinna property_value: IAO:0000116 "subclasses (anterior, superior, posterior) can be added on request" xsd:string [Term] id: UBERON:0008904 name: neuromast namespace: uberon def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements." [ZFIN:ZDB-PUB-961014-576] subset: efo_slim synonym: "cyatocïde@fr" EXACT [TAO:0000243] synonym: "lateral line neuromast" EXACT [ZFA:0000243] synonym: "lateral line organ" BROAD [ZFA:0000243] synonym: "neuromast organ" EXACT [PHENOSCAPE:wd] synonym: "neuromaste superficiel@fr" EXACT [TAO:0000243] synonym: "neuromasts" EXACT PLURAL [ZFA:0000243] xref: AAO:0001004 xref: EFO:0003513 xref: TAO:0000243 xref: ZFA:0000243 is_a: UBERON:0035555 ! lateral line sense organ relationship: part_of UBERON:0010202 ! lateral line property_value: UBPROP:0000001 "Type of mechanoreceptive organ of the lateral line which are arranged in lines on the body surface. These organs are constituted by hair cells and supporting cells and it is located in the epidermis with its hair cells exposed to the surface. Absent in some caecilians. These receptors receive afferent and efferent innervations.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO", source="AAO:EJS"} property_value: UBPROP:0000001 "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000243", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000002 "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO"} property_value: UBPROP:0000002 "relationship loss: subclass lateral line receptor (AAO:0010705)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO"} [Term] id: UBERON:0008906 name: lateral line nerve namespace: uberon def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] synonym: "lateral line nerves" EXACT PLURAL [ZFA:0001479] xref: AAO:0010077 xref: TAO:0001479 xref: ZFA:0001479 relationship: part_of UBERON:0002540 ! lateral line system property_value: UBPROP:0000001 "Any of the sensory nerves that innervate mechano- and electroreceptors of the lateral line system. The lateral line nerves may be separated in two components, anterior and posterior, in relation to the position of its roots with respect to the otic capsule. These nerves develop from lateral line placodes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO", source="AAO:SIQ"} property_value: UBPROP:0000002 "relationship loss: innervates lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"} property_value: UBPROP:0000002 "relationship type change: part_of_proxy lateral line system (AAO:0000975) CHANGED TO: part_of lateral line system (UBERON:0002540)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"} [Term] id: UBERON:0008917 name: ampullary organ namespace: uberon def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd] subset: organ_slim synonym: "ampullary electroreceptor" EXACT [] synonym: "ampullary electroreceptor organ" EXACT [TAO:0002104] synonym: "ampullary receptor" BROAD [] synonym: "electrosensory ampullary organ" EXACT [] xref: AAO:0001006 xref: TAO:0002104 is_a: UBERON:0035555 ! lateral line sense organ relationship: part_of UBERON:0010202 ! lateral line property_value: RO:0002175 NCBITaxon:7746 property_value: RO:0002175 NCBITaxon:7777 property_value: RO:0002175 NCBITaxon:7900 property_value: RO:0002175 NCBITaxon:7911 property_value: RO:0002175 NCBITaxon:8289 property_value: RO:0002175 NCBITaxon:8296 property_value: UBPROP:0000001 "An electroreceptor consisting of receptor cells sunk into the epidermis or located in an epidermal cavity opening to the surface through a duct and pore. It can detect weak electric currents generated by other animals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO", source="ZipcodeZoo:ampullary_organ"} property_value: UBPROP:0000002 "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO"} property_value: UBPROP:0000002 "relationship loss: subclass lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO"} property_value: UBPROP:0000008 "The presence of these organs varies greatly among anamniotes, but an out-group analysis of their distribution in adult anamniotes suggests that they were present in primitive vertebrates and retained in living lampreys, cartilaginous fishes, lobe-finned fishes and basal ray-finned fishes (bichirs, sturgeons and paddlefishes). Ampullary organs do not occur in gars and bowfins, two of the three groups of neopterygian fishes, nor are they found in most teleost fishes, but they do appear to have re-evolved at least twice (and more likely three or more times) in five groups of teleosts (Northcutt, 1997).[http://icb.oxfordjournals.org/content/42/4/743]" xsd:string [Term] id: UBERON:0008918 name: ampulla of Lorenzini namespace: uberon def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [http://en.wikipedia.org/wiki/Ampullae_of_Lorenzini] subset: organ_slim synonym: "ampullae of Lorenzini" EXACT PLURAL [http://en.wikipedia.org/wiki/Ampullae_of_Lorenzini] xref: http://en.wikipedia.org/wiki/Ampullae_of_Lorenzini is_a: UBERON:0035555 ! lateral line sense organ property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/88/Electroreceptors_in_a_sharks_head.svg xsd:anyURI property_value: RO:0002175 NCBITaxon:119203 [Term] id: UBERON:0008921 name: substratum of layer of retina namespace: uberon def: "." [http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html, UBERON:CL_meeting_20110725] relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0008922 name: sublaminar layer S1 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000113 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 [Term] id: UBERON:0008923 name: sublaminar layer S2 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000114 is_a: UBERON:0008927 ! sublaminar layers S1 or S2 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 [Term] id: UBERON:0008924 name: sublaminar layer S3 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000115 is_a: UBERON:0008928 ! sublaminar layers S2 or S3 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 [Term] id: UBERON:0008925 name: sublaminar layer S4 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm] xref: CP:0000116 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009731 ! sublaminar layers S3 or S4 is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4 is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4 [Term] id: UBERON:0008926 name: sublaminar layer S5 namespace: uberon def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm] xref: CP:0000117 is_a: UBERON:0008929 ! sublaminar layers S4 or S5 is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5 is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5 [Term] id: UBERON:0008927 name: sublaminar layers S1 or S2 namespace: uberon def: "One of sublaminar layers S1 or S2." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000118 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008928 name: sublaminar layers S2 or S3 namespace: uberon def: "One of sublaminar layers S2 or S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000119 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008929 name: sublaminar layers S4 or S5 namespace: uberon def: "One of sublaminar layers S4 or S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] xref: CP:0000120 is_a: UBERON:0008921 ! substratum of layer of retina relationship: part_of UBERON:0001795 ! inner plexiform layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008959 name: auditory bulla namespace: uberon def: "A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [http://en.wikipedia.org/wiki/Auditory_bulla] synonym: "auditory bullae" RELATED PLURAL [] synonym: "bulla" BROAD [] synonym: "bulla tympanica" RELATED LATIN [https://orcid.org/0000-0002-6601-2165] synonym: "sigmoid process" NARROW [] synonym: "tympanic bulla" RELATED [] xref: Auditory:bulla xref: EMAPA:37433 {source="MA:th"} xref: NCIT:C112425 relationship: part_of UBERON:0001690 ! ear property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/af/Toothed_whale_sound_production.png xsd:anyURI property_value: UBPROP:0000008 "In extant primates, the structure is found in tarsiers, lemurs, and lorises[WP]. When present in marsupials, it usually forms the alisphenoid; in placentals variously constructed of ectotympanic, entotympanic, petrosal, or a combination of these and others" xsd:string {source="Rose"} property_value: UBPROP:0000011 "may be formed from entotympanic and ectotympanic" xsd:string [Term] id: UBERON:0009016 name: ciliary stroma namespace: uberon synonym: "ocular ciliary stroma" EXACT [] synonym: "stroma of ciliary body" EXACT [] xref: EMAPA:35241 xref: FMA:312260 xref: http://www.snomedbrowser.com/Codes/Details/280868008 xref: MA:0001239 relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body [Term] id: UBERON:0009038 name: sulcus ampullaris namespace: uberon def: "The groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove] subset: pheno_slim synonym: "ampullary groove" EXACT [FMA:74584] synonym: "ampullary sulcus" EXACT [] xref: FMA:74584 xref: http://www.snomedbrowser.com/Codes/Details/368954006 xref: MA:0002835 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla [Term] id: UBERON:0009053 name: dorsal nucleus of trapezoid body namespace: uberon synonym: "dorsal nucleus of trapezoid body" EXACT [BIRNLEX:2575] synonym: "nucleus dorsalis corporis trapezoidei" EXACT LATIN [] xref: BIRNLEX:2575 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1282 xref: http://linkedlifedata.com/resource/umls/id/C0228438 xref: http://linkedlifedata.com/resource/umls/id/C1289450 xref: http://www.snomedbrowser.com/Codes/Details/369021001 xref: UMLS:C0228438 {source="BIRNLEX:2575"} xref: UMLS:C1289450 {source="BIRNLEX:2575"} is_a: UBERON:0007633 ! nucleus of trapezoid body property_value: IAO:0000116 "merge with SOC? See https://github.com/obophenotype/uberon/issues/631#issuecomment-67754754" xsd:string [Term] id: UBERON:0009121 name: vomeronasal nerve namespace: uberon def: "Nerve carrying fibers from the vomeronasal organ epithelium to the accessory olfactory bulb." [AAO:DSM, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] synonym: "accessory olfactory bulb vomeronasal nerve" RELATED [BAMS:vn] xref: AAO:0010608 xref: BAMS:vn xref: BAMS:von xref: BTO:0001351 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1567 xref: MBA:949 xref: NLXANAT:1005018 relationship: part_of UBERON:0009954 ! vomeronasal system property_value: UBPROP:0000001 "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010608", ontology="AAO", source="AAO:DSM"} property_value: UBPROP:0000008 "In the human this disappears before birth" xsd:string [Term] id: UBERON:0009471 name: dorsum of tongue namespace: uberon def: "The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "dorsal tongue" EXACT [FMA:54651] synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html] synonym: "tongue dorsum" EXACT [FMA:54651] xref: FMA:54651 xref: http://linkedlifedata.com/resource/umls/id/C0226952 xref: http://www.snomedbrowser.com/Codes/Details/66938003 xref: NCIT:C32482 xref: UMLS:C0226952 {source="ncithesaurus:Dorsum_of_the_Tongue"} is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 {source="FMA"} ! tongue [Term] id: UBERON:0009477 name: associated mesenchyme of otic placode namespace: uberon def: "Mesenchyme that is part of a otic placode." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0001340 xref: EMAPA:16196 relationship: part_of UBERON:0003069 ! otic placode [Term] id: UBERON:0009506 name: mesenchyme of middle ear namespace: uberon def: "Mesenchyme that is part of a developing middle ear." [OBOL:automatic] subset: emapa_ehdaa2 synonym: "middle ear associated mesenchyme" EXACT [EHDAA2:0001182] synonym: "otic mesenchyme" BROAD [] xref: EHDAA2:0001182 xref: EMAPA:17001 relationship: part_of UBERON:0001756 ! middle ear property_value: UBPROP:0000012 "Also 1st arch maxillary mesenchyme in EHDAA2" xsd:string {external_ontology="EHDAA2"} [Term] id: UBERON:0009647 name: tympanic membrane epithelium namespace: uberon def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)" [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://orcid.org/0000-0002-6601-2165] synonym: "tympanic epithelium" EXACT [MA:0001224] synonym: "tympanic membrane epithelial layer" EXACT [] xref: EMAPA:19064 xref: http://linkedlifedata.com/resource/umls/id/C1711401 xref: http://www.snomedbrowser.com/Codes/Details/70839004 xref: MA:0001224 xref: NCIT:C49308 xref: UMLS:C1711401 {source="ncithesaurus:Tympanic_Epithelium"} is_a: UBERON:0010071 ! layer of tympanic membrane is_a: UBERON:0015813 ! middle ear epithelium [Term] id: UBERON:0009648 name: eyelid subcutaneous connective tissue namespace: uberon def: "A eyelid connective tissue that is part of a hypodermis." [OBOL:automatic] synonym: "superficial fascia of eyelid" RELATED [FMA:63975] xref: EMAPA:37533 {source="MA:th"} xref: FMA:63975 xref: http://linkedlifedata.com/resource/umls/id/C1707991 xref: MA:0001252 xref: NCIT:C49226 xref: UMLS:C1707991 {source="ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue"} is_a: UBERON:0003581 ! eyelid connective tissue [Term] id: UBERON:0009671 name: nasal fin namespace: uberon def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [https://doi.org/10.1002/aja.1001500308] xref: EHDAA2:0004548 xref: FMA:295940 is_a: UBERON:0005384 ! nasal cavity epithelium [Term] id: UBERON:0009672 name: oronasal membrane namespace: uberon def: "The oronasal membrane separates the oral cavity and nasal cavity." [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] synonym: "bucconasal membrane" EXACT [EHDAA:7840] xref: EHDAA2:0000188 xref: EHDAA:7840 xref: EHDAA:7984 xref: FMA:295942 relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium property_value: IAO:0000116 "split into two?" xsd:string property_value: UBPROP:0000008 "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" xsd:string [Term] id: UBERON:0009692 name: lumen of pharyngotympanic tube namespace: uberon def: "A organ cavity that is part of a pharyngotympanic tube." [OBOL:automatic] synonym: "auditory tube lumen" EXACT [EHDAA2:0004118] synonym: "lumen of auditory tube" EXACT [FMA:60079] synonym: "lumen of eustachian tube" EXACT [FMA:60079] synonym: "pharyngotympanic tube lumen" EXACT [FMA:60079] xref: EHDAA2:0004118 xref: FMA:60079 relationship: part_of UBERON:0002393 ! pharyngotympanic tube property_value: IAO:0000116 "Check relationships for conformance with AAO and XAO" xsd:string [Term] id: UBERON:0009716 name: cupular organ namespace: uberon def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [https://doi.org/10.2108/zsj.27.842] is_a: UBERON:0000020 ! sense organ property_value: UBPROP:0000008 "possible homologues of neuromasts in the inner ear (Bone & Ryan, 1978; Wada et al 1998). In the tunicate cupular organ, the sensory cell is a primary neuron sending an axon to the CNS. The sensory cilium is within a deep indentation of the cell and is surrounded by a collar of short microvilli." xsd:string [Term] id: UBERON:0009717 name: coronal organ namespace: uberon def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [https://doi.org/10.1002/jez.b.21013] subset: organ_slim xref: BSA:0000122 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009731 name: sublaminar layers S3 or S4 namespace: uberon def: "One of sublaminar layers S3 or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009732 name: sublaminar layers S1 or S2 or S5 namespace: uberon def: "One of sublaminar layers S1, S2, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001041 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009733 name: sublaminar layers S1 or S2 or S3 namespace: uberon def: "One of sublaminar layers S1, S2, or S3." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001042 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009734 name: sublaminar layers S2 or S3 or S4 namespace: uberon def: "One of sublaminar layers S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001043 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009735 name: sublaminar layers S1 or S3 or S4 namespace: uberon def: "One of sublaminar layers S1, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001044 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009736 name: sublaminar layers S3 or S4 or S5 namespace: uberon def: "One of sublaminar layers S3, S4, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001045 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009737 name: sublaminar layers S1 or S2 or S3 or S4 namespace: uberon def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31] xref: CP:0001046 is_a: UBERON:0008921 ! substratum of layer of retina property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009738 name: border of sublaminar layers S1 and S2 namespace: uberon def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] xref: CP:0001038 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009739 name: border of sublaminar layers S3 and S4 namespace: uberon def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165] xref: CP:0001039 is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009740 name: border between sublaminar layers namespace: uberon def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [https://orcid.org/0000-0002-6601-2165] relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0009851 name: border of sublaminar layers S4 and S5 namespace: uberon def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009852 name: border of sublaminar layers S2 and S3 namespace: uberon def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31] is_a: UBERON:0009740 ! border between sublaminar layers relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0009892 name: ascidian anterior sensory vesicle namespace: uberon xref: ANISEED:777309 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0009893 name: ascidian ocellus namespace: uberon xref: ANISEED:874489 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0009892 ! ascidian anterior sensory vesicle [Term] id: UBERON:0009954 name: vomeronasal system namespace: uberon def: "A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants" [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0005725 ! olfactory system property_value: IAO:0000116 "check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES]" xsd:string [Term] id: UBERON:0009956 name: corpuscle of de Quatrefage namespace: uberon def: "A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve." [http://www.ncbi.nlm.nih.gov/pubmed/11523831] synonym: "organ of de Quatrefage" EXACT [] is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0010020 name: tubotympanic recess epithelium namespace: uberon def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [ISBN:0124020607, VHOG:0001297] synonym: "tubotympanic recess" RELATED [VHOG:0001297] xref: EHDAA2:0004115 xref: EHDAA:6772 xref: EMAPA:17002 xref: FMA:312393 xref: http://linkedlifedata.com/resource/umls/id/C1284046 xref: http://www.snomedbrowser.com/Codes/Details/361516008 xref: MA:0001218 xref: NCIT:C34318 xref: UMLS:C1284046 {source="ncithesaurus:Tubotympanic_Recess"} xref: VHOG:0001297 is_a: UBERON:0015813 ! middle ear epithelium property_value: UBPROP:0000003 "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001297", ontology="VHOG", source="http://bgee.unil.ch/", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417"} [Term] id: UBERON:0010032 name: anterior part of tongue namespace: uberon def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "anterior 2/3 of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "anterior 2/3 of tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "anterior two thirds of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "apex linguae" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "apex of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "buccal part of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "front of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "oral part of the tongue" RELATED [http://en.wikipedia.org/wiki/Anterior_tongue] synonym: "pars anterior dorsi linguae" RELATED LATIN [http://en.wikipedia.org/wiki/Anterior_tongue] xref: Anterior:tongue xref: EMAPA:37437 {source="MA:th"} xref: FMA:229084 xref: http://linkedlifedata.com/resource/umls/id/C0226946 xref: NCIT:C32130 xref: UMLS:C0226946 {source="ncithesaurus:Apex_of_the_Tongue"} relationship: part_of UBERON:0001723 ! tongue property_value: depicted:by Illu04:tongue.jpg xsd:anyURI property_value: UBPROP:0000011 "The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue" xsd:string property_value: UBPROP:0000012 "check NCIT" xsd:string {external_ontology="NCIT"} [Term] id: UBERON:0010033 name: posterior part of tongue namespace: uberon def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)" [http://en.wikipedia.org/wiki/Posterior_tongue] synonym: "base of the tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] synonym: "base of tongue" EXACT [http://en.wikipedia.org/wiki/Posterior_tongue] synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645] synonym: "pars posterior dorsi linguae" EXACT LATIN [http://en.wikipedia.org/wiki/Posterior_tongue] synonym: "pars posterior linguae" EXACT LATIN [FMA:TA] synonym: "pars postsulcalis (dorsum linguae)" EXACT [FMA:54645] synonym: "pharyngeal part of the tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] synonym: "pharyngeal part of tongue" EXACT [FMA:54645] synonym: "pharyngeal portion of dorsum of tongue" EXACT [FMA:54645] synonym: "posterior 1/3 of the tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] synonym: "posterior part of dorsum of tongue" EXACT [FMA:54645] synonym: "posterior third of tongue" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] synonym: "postsulcal part of dorsum of tongue" EXACT [FMA:54645] synonym: "radix linguae" RELATED [http://en.wikipedia.org/wiki/Posterior_tongue] xref: EMAPA:37438 {source="MA:th"} xref: FMA:54645 xref: http://linkedlifedata.com/resource/umls/id/C0226958 xref: http://www.snomedbrowser.com/Codes/Details/362094001 xref: MA:0003031 xref: NCIT:C12228 xref: Posterior:tongue xref: UMLS:C0226958 {source="ncithesaurus:Base_of_the_Tongue"} relationship: part_of UBERON:0009471 {source="FMA"} ! dorsum of tongue property_value: depicted:by Illu04:tongue.jpg xsd:anyURI [Term] id: UBERON:0010052 name: mucosa of dorsum of tongue namespace: uberon def: "A mucosa that is part of a dorsum of tongue." [OBOL:automatic] synonym: "mucosa of dorsal surface of tongue" EXACT [] xref: FMA:74871 xref: http://www.snomedbrowser.com/Codes/Details/245835003 is_a: UBERON:0005020 ! mucosa of tongue relationship: part_of UBERON:0009471 ! dorsum of tongue property_value: IAO:0000116 "check surface terms" xsd:string property_value: UBPROP:0000011 "develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN:1607950324" xsd:string [Term] id: UBERON:0010054 name: malleus cartilage element namespace: uberon def: "A malleus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] xref: EMAPA:18229 is_a: UBERON:0015018 ! malleus endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element [Term] id: UBERON:0010055 name: stapes cartilage element namespace: uberon def: "A stapes endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] xref: EMAPA:18230 is_a: UBERON:0015016 ! stapes endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element relationship: part_of UBERON:0001686 ! auditory ossicle bone property_value: IAO:0000116 "TODO - check relationship to Recihert's" xsd:string property_value: UBPROP:0000008 "The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks." xsd:string [Term] id: UBERON:0010062 name: pharyngotympanic tube epithelium namespace: uberon synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117] synonym: "eustachian tube epithelium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EHDAA2:0004117 xref: EMAPA:32801 xref: FMA:285217 xref: MA:0003142 is_a: UBERON:0015813 ! middle ear epithelium relationship: part_of UBERON:0002393 {source="cjm"} ! pharyngotympanic tube [Term] id: UBERON:0010063 name: tympanic cavity epithelium namespace: uberon xref: EHDAA2:0004116 is_a: UBERON:0015813 ! middle ear epithelium [Term] id: UBERON:0010065 name: auditory meatus epithelium namespace: uberon xref: EHDAA2:0004114 is_a: UBERON:0015814 ! outer ear epithelium [Term] id: UBERON:0010069 name: outer epithelial layer of tympanic membrane namespace: uberon def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://orcid.org/0000-0002-6601-2165] synonym: "cuticular layer of tympanic membrane" EXACT [FMA:56819] synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819] synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819] synonym: "outer layer of tympanic membrane" EXACT [] synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165] xref: FMA:56819 xref: http://www.snomedbrowser.com/Codes/Details/39725007 is_a: UBERON:0009647 ! tympanic membrane epithelium is_a: UBERON:0015814 ! outer ear epithelium relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0010070 name: intermediate layer of tympanic membrane namespace: uberon def: "The intermediate fibrous layer of the tympanic membrane." [http://www.ncbi.nlm.nih.gov/pubmed/11237469, https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376] synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830] synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830] synonym: "intermediate fibrous layer of tympanic membrane" EXACT [FMA:56830] synonym: "tympanic endothelium" EXACT [MA:0001223] xref: EMAPA:19063 xref: FMA:56830 xref: http://www.snomedbrowser.com/Codes/Details/44692008 xref: MA:0001223 is_a: UBERON:0010071 {source="FMA"} ! layer of tympanic membrane property_value: UBPROP:0000012 "check MA" xsd:string {external_ontology="MA"} [Term] id: UBERON:0010071 name: layer of tympanic membrane namespace: uberon subset: grouping_class synonym: "tympanic membrane layer" EXACT [FMA:56732] xref: FMA:56732 relationship: part_of UBERON:0002364 ! tympanic membrane property_value: UBPROP:0000008 "In mammals, this class groups together the two epithelial layers plus the intermediate fibrous layer" xsd:string [Term] id: UBERON:0010078 name: optic choroid vascular plexus namespace: uberon alt_id: ZFA:0005228 synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] synonym: "choroid vasculature" RELATED [ZFA:0005094] synonym: "choroidal vascular plexus" RELATED [TAO:0005094] synonym: "CVP" EXACT ABBREVIATION [ZFA:0005094] synonym: "optic choroid vascular plexus" RELATED [XAO:0004176] xref: TAO:0005094 xref: XAO:0004176 xref: ZFA:0005094 is_a: UBERON:0002203 {source="ZFA"} ! vasculature of eye relationship: part_of UBERON:0001776 {source="ZFA"} ! optic choroid property_value: IAO:0000116 "Consider merging with capillary layer. Consider choriocapillaris complex" xsd:string property_value: UBPROP:0000001 "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruchs's membrane.[XAO:0004176]." xsd:string {source="XAO:0004176"} property_value: UBPROP:0000001 "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string {source="ZFA:0005094"} property_value: UBPROP:0000008 "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} [Term] id: UBERON:0010135 name: sensory circumventricular organ namespace: uberon def: "A circumventricular organ that is capable of monitoring the levels of substances to the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "humerosensory circumventricular organ" RELATED [] synonym: "humerosensory system" RELATED PLURAL [NeuroNames:2856] synonym: "humerosensory system organ" RELATED [] synonym: "sensitive circumventricular organs" RELATED PLURAL [NeuroNames:2856] synonym: "sensitive organs" RELATED PLURAL [NeuroNames:2856] synonym: "sensory circumventricular organs" RELATED [NeuroNames:2856] synonym: "sensory CVOs" RELATED PLURAL [NeuroNames:2856] xref: EMAPA:37741 {source="MA:th"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2856 xref: MA:0002944 relationship: part_of UBERON:0001032 ! sensory system [Term] id: UBERON:0010202 name: lateral line namespace: uberon def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [http://en.wikipedia.org/wiki/Lateral_line, ZFA:0001469] synonym: "lateral lines" EXACT PLURAL [ZFA:0001469] xref: AAO:0011128 xref: Lateral:line xref: TAO:0001469 xref: XAO:0004002 xref: ZFA:0001469 relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system [Term] id: UBERON:0010207 name: nictitating membrane namespace: uberon def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [http://en.wikipedia.org/wiki/Nictitating_membrane, MESH:A13.660] subset: pheno_slim synonym: "haw" RELATED [http://en.wikipedia.org/wiki/Nictitating_membrane] synonym: "membrana nictitans" EXACT LATIN [http://en.wikipedia.org/wiki/Nictitating_membrane] synonym: "nictitans" EXACT [http://tolweb.org/Amniota] synonym: "palperbra tertia" EXACT LATIN [http://www.ncbi.nlm.nih.gov/pubmed/7559104] synonym: "third eyelid" EXACT [MESH:A13.660] xref: http://en.wikipedia.org/wiki/File\:Chickenblinking.jpg xref: http://linkedlifedata.com/resource/umls/id/C0028058 xref: http://www.snomedbrowser.com/Codes/Details/113326005 xref: MESH:D009541 xref: NCIT:C77657 xref: Nictitating:membrane xref: UMLS:C0028058 {source="ncithesaurus:Nictitating_Membrane"} is_a: UBERON:0001711 ! eyelid relationship: part_of UBERON:0001811 ! conjunctiva property_value: IAO:0000116 "We exclude the shark structure for this via a taxon constraint." xsd:string property_value: RO:0002175 NCBITaxon:261739 property_value: RO:0002175 NCBITaxon:8292 property_value: RO:0002175 NCBITaxon:8782 property_value: RO:0002175 NCBITaxon:9632 property_value: RO:0002175 NCBITaxon:9709 property_value: RO:0002175 NCBITaxon:9816 property_value: RO:0002175 NCBITaxon:9835 property_value: UBPROP:0000008 "in mice, the nictitating membrane is very small and composed of a very thin core of cartilage covered by loose connective tissue" xsd:string property_value: UBPROP:0000008 "In most primate species, a plica semilunaris is present, although fully developed nictitating membranes can be found in lemurs and lorisoid primates[Wikipedia:Nictitating_membrane]" xsd:string property_value: UBPROP:0000008 "Some reptiles, birds, and sharks have full nictitating membranes; in many mammals, a small, vestigial portion of the membrane remains in the corner of the eye. Some mammals, such as camels, polar bears, seals, and aardvarks, have full nictitating membranes. fully developed nictitating membranes can be found in lemurs and lorisoid primates." xsd:string {source="WP"} property_value: UBPROP:0000008 "The Calabar angwantibo (Arctocebus calabarensis, a lorisoid) is the only primate to have a functioning nictitating membrane[Wikipedia:Calabar_angwantibo]" xsd:string [Term] id: UBERON:0010209 name: plica semilunaris of conjunctiva namespace: uberon def: "The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted." [http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva] synonym: "plica semilunaris (conjunctiva)" EXACT [FMA:59045] synonym: "plica semilunaris conjunctivae" RELATED LATIN [http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva] synonym: "plica semilunaris of the conjunctiva" RELATED [http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva] synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045] xref: FMA:59045 xref: http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva xref: http://www.snomedbrowser.com/Codes/Details/280686009 relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png xsd:anyURI property_value: UBPROP:0000008 "It is the vestigial remnant of the nictitating membrane" xsd:string [Term] id: UBERON:0010223 name: left pupil namespace: uberon def: "A pupil that is part of a left eye." [OBOL:automatic] synonym: "pupil of left eye" EXACT [FMA:58254] xref: FMA:58254 xref: http://www.snomedbrowser.com/Codes/Details/368597006 is_a: UBERON:0001771 ! pupil relationship: part_of UBERON:0004548 ! left eye [Term] id: UBERON:0010224 name: right pupil namespace: uberon def: "A pupil that is part of a right eye." [OBOL:automatic] synonym: "pupil of right eye" EXACT [FMA:58253] xref: FMA:58253 xref: http://www.snomedbrowser.com/Codes/Details/368575009 is_a: UBERON:0001771 ! pupil relationship: part_of UBERON:0004549 ! right eye [Term] id: UBERON:0010230 name: eyeball of camera-type eye namespace: uberon def: "The core globe-shaped component of the camera-type eye." [UBERON:cjm] subset: pheno_slim synonym: "bulbus oculi" EXACT [] synonym: "eye" RELATED INCONSISTENT [] synonym: "eye globe" EXACT [VHOG:0001616] synonym: "eyeball" EXACT [FMA:12513] synonym: "globe" RELATED [HP:0100886, MIAA:0000283] xref: FMA:12513 xref: http://en.wikipedia.org/wiki/Globe_(human_eye) xref: http://www.snomedbrowser.com/Codes/Details/244486005 xref: MIAA:0000283 xref: VHOG:0001616 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye property_value: IAO:0000232 "See notes for camera-type eye" xsd:string property_value: UBPROP:0000202 FMA:264089 [Term] id: UBERON:0010244 name: choroid tapetum lucidum namespace: uberon def: "A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] synonym: "choroidal tapetum lucidum" EXACT [] synonym: "tapetum choroideae" EXACT [BTO:0001828] xref: BTO:0001828 xref: Classification xref: http://www.snomedbrowser.com/Codes/Details/3034006 is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye relationship: part_of UBERON:0001776 ! optic choroid property_value: UBPROP:0000012 "we make the assumption that the BTO class belongs here rather than with the parent; the other type is the retinal type" xsd:string {external_ontology="BTO"} [Term] id: UBERON:0010245 name: retinal tapetum lucidum namespace: uberon def: "A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] xref: Classification is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye relationship: part_of UBERON:0000966 ! retina property_value: RO:0002175 NCBITaxon:30559 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:32443 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:8493 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:9263 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: UBPROP:0000008 "as seen in teleosts, crocodiles, marsupials and fruit bats" xsd:string {source="WP"} property_value: UBPROP:0000008 "In crocodilians, a semicircular area of the retinal epithelium in the superior fundus shows a fair sulfur yellow coloration and is specialized as a tapetum lucidum." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="NCBITaxon:8493"} property_value: UBPROP:0000008 "In the tapetal area, no melanosomes are formed indicating a nonocclusible tapetum in the Caiman sclerops." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="NCBITaxon:8499"} property_value: UBPROP:0000008 "Retinal tapeta lucida are common in fish and some reptiles, but rarely occur in mammals. In most of these species the retinal tapetum can be classified as either a lipid (in some teleosts, mammals) or guanine type (in some teleosts, reptiles). Another differentiation can be made among the retinal tapeta lucida based on whether the tapetum is occlusible (found in most of teleosts), or nonocclusible (or static) (found in mammals)" xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: UBPROP:0000008 "the tapetum lucidum is an integral part of the pigment epithelium in primitive teleosts (lying in the pro- cesses of the pigmented epithelial cells). It can vary in chemical nature." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="NCBITaxon:32443"} [Term] id: UBERON:0010246 name: choroidal guanine tapetum namespace: uberon def: "A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] xref: Classification is_a: UBERON:0010244 ! choroid tapetum lucidum property_value: RO:0002175 NCBITaxon:7778 property_value: RO:0002175 NCBITaxon:7864 property_value: UBPROP:0000008 "A choroidal tapetum of reflecting cells lying immediately outside the choriocapillaris is formed in a few primitive teleosts." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="NCBITaxon:32443"} property_value: UBPROP:0000008 "elasmobranchii (skates, rays, and sharks) and chimaeras" xsd:string {source="WP"} property_value: UBPROP:0000008 "The elasmobranch tapetum in Squalus and Scyliorhinus con- sists of sheets of 12-13 superposed guanine crystals in the choroid." xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="NCBITaxon:7778"} [Term] id: UBERON:0010247 name: choroidal tapetum cellulosum namespace: uberon def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup" [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] comment: The choroidal stroma adjacent to the tapetum lucidum contains numerous small blood vessels that penetrate the tapetal layer to form a single-layered capillary network, known as the choriocapillaris, on the surface of the tapetum. The tapetum cellulosum is thus interposed between the large branching vessels in the choroid and the single layer of the choriocapillaris beneath the retinal epithelium[PMID:14738502] synonym: "choroid tapetum cellulosum" EXACT [] xref: Classification is_a: UBERON:0010244 ! choroid tapetum lucidum property_value: RO:0002175 NCBITaxon:33554 {editor="cjm", notes="most carnivores", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:9721 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:9989 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502", taxon="spotted cavy"} [Term] id: UBERON:0010248 name: choroidal tapetum fibrosum namespace: uberon def: "A choroid tapetum lucidum that is an array of extracellular fibers." [http://en.wikipedia.org/wiki/Tapetum_lucidum#Classification, http://www.ncbi.nlm.nih.gov/pubmed/14738502, https://orcid.org/0000-0002-6601-2165] synonym: "fibrous tapetum" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/14738502, NCBITaxon:9845] xref: Classification is_a: UBERON:0010244 ! choroid tapetum lucidum property_value: RO:0002175 NCBITaxon:9788 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: RO:0002175 NCBITaxon:9845 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} property_value: UBPROP:0000008 "cows, sheep, goats and horses" xsd:string {source="WP"} [Term] id: UBERON:0010271 name: musculus retractor bulbi namespace: uberon def: "Cranial nerve VI innervated; ventral and posterior to the eye." [AAO:0010122] synonym: "M. retractor bulbi" EXACT [] synonym: "retractor bulbi" EXACT [] synonym: "retractor bulbi muscle" EXACT [] xref: AAO:0010122 is_a: UBERON:0001601 {source="cjm"} ! extra-ocular muscle property_value: IAO:0000116 "TODO - add innervation relationships" xsd:string property_value: RO:0002175 NCBITaxon:40674 property_value: UBPROP:0000008 "In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection" xsd:string {source="wiki/Abducens_nerve"} [Term] id: UBERON:0010284 name: lacrimal punctum namespace: uberon def: "A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi." [http://en.wikipedia.org/wiki/Lacrimal_punctum] subset: pheno_slim synonym: "lacrimal point" RELATED [http://en.wikipedia.org/wiki/Lacrimal_punctum] synonym: "lacrimal puncta" RELATED PLURAL [http://en.wikipedia.org/wiki/Lacrimal_punctum] synonym: "puncta lacrimalia" RELATED LATIN [http://en.wikipedia.org/wiki/Lacrimal_punctum] xref: FMA:59365 xref: http://www.snomedbrowser.com/Codes/Details/263344003 xref: Lacrimal:punctum relationship: part_of UBERON:0001850 ! lacrimal drainage system property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/53/Gray895.png xsd:anyURI property_value: UBPROP:0000009 "collect tears produced by the lacrimal glands" xsd:string [Term] id: UBERON:0010289 name: scleral cartilage namespace: uberon def: "Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye." [http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage] synonym: "scleral cartilage element" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/17051547] synonym: "scleral cartilaginous cup" NARROW SENSU [http://www.ncbi.nlm.nih.gov/pubmed/17051547] synonym: "sclerotic cartilage" EXACT [ZFA:0001509] synonym: "sclerotic cartilages" RELATED PLURAL [ZFA:0001509] xref: TAO:0001509 xref: ZFA:0001509 is_a: UBERON:0010296 ! scleral skeletal element relationship: part_of UBERON:0001773 {source="cjm"} ! sclera property_value: IAO:0000116 "consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage" xsd:string property_value: IAO:0000116 "relationship to sclera - overlaps?" xsd:string property_value: UBPROP:0000001 "Bilaterally paired thin continuous band of cartilage that sagittally encircles the eye.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001509", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "May be calcified in chondrichthyans. Tetrapods without this element (e.g., snakes and mammals) have a collagenous sclera. May not be homologous - see http://www.ncbi.nlm.nih.gov/pubmed/17051547. cup-shaped in birds. Present in monotremes." xsd:string [Term] id: UBERON:0010290 name: scleral ossicle namespace: uberon def: "A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage." [http://www.ncbi.nlm.nih.gov/pubmed/17051547] synonym: "scleral ossicle" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/17051547] synonym: "sclerotic bone" EXACT [ZFA:0001411] synonym: "sclerotic ossicle" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/45632000 is_a: UBERON:0010296 ! scleral skeletal element property_value: UBPROP:0000008 "The distribution of scleral ossicles and scleral cartilage among verte- brate taxa is not the same. Some taxa (e.g., birds) have both elements; some only have one element (e.g., crocodiles only have a scleral cartilage); while others (e.g., snakes) have neither element (Walls, 1942) number of ossicles making up the sclerotic ring as well as the shape of both the individual plates and the sclerotic ring is variable among tetrapod taxa.... It is therefore extremely likely that scleral skeletal elements (ossicles and cartilage) of all rep- tiles (including birds) are homologous (but cannot be assumed for reptiles and teleosts)" xsd:string property_value: UBPROP:0000009 "The function of these elements is to support the eye from within the sclera; scleral ossicles play an additional important role during accommodation in terrestrial vertebrates (Lemmrich, 1931; Walls, 1942; King and McLelland, 1984)." xsd:string [Term] id: UBERON:0010291 name: layer of sclera namespace: uberon def: "." [http://en.wikipedia.org/wiki/Sclera#Histology] xref: Histology relationship: part_of UBERON:0001773 {source="cjm"} ! sclera [Term] id: UBERON:0010292 name: episcleral layer of eyeball namespace: uberon def: "The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels." [http://en.wikipedia.org/wiki/Episcleral_layer] synonym: "episclera" EXACT [FMA:58362] synonym: "episcleral layer" EXACT [FMA:58362] synonym: "lamina episcleralis" EXACT LATIN [http://en.wikipedia.org/wiki/Episcleral_layer] xref: Episcleral:layer xref: FMA:58362 xref: http://linkedlifedata.com/resource/umls/id/C0229109 xref: http://www.snomedbrowser.com/Codes/Details/368850003 xref: NCIT:C12989 xref: UMLS:C0229109 {source="ncithesaurus:Episclera"} is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera [Term] id: UBERON:0010293 name: suprachoroid lamina namespace: uberon def: "On the external surface of the optic choroid is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellae-each lamella consisting of a network of fine elastic fibers among which are branched pigment cells." [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "fusca sclerae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina fusca of sclera" RELATED [FMA:58368] synonym: "lamina fusca sclerae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina fusca sclerae" RELATED LATIN [FMA:TA] synonym: "lamina fusca scletae" RELATED [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina suprachorioidea" EXACT LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina suprachorioidea" RELATED LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "lamina suprachoroidea" EXACT LATIN [http://en.wikipedia.org/wiki/Suprachoroid_lamina] synonym: "suprachoroid lamina of sclera" RELATED [FMA:58368] xref: FMA:58368 xref: http://www.snomedbrowser.com/Codes/Details/280607003 xref: Suprachoroid:lamina relationship: part_of UBERON:0013399 ! blood vessel layer of choroid property_value: UBPROP:0000010 "The spaces between the lamellae are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted." xsd:string property_value: UBPROP:0000012 "FMA treats this as part of the sclera" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0010294 name: scleral endothelium namespace: uberon def: "An endothelium that is part of a sclera." [OBOL:automatic] is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera is_a: UBERON:0015808 ! eye epithelium [Term] id: UBERON:0010295 name: substantia propria of sclera namespace: uberon def: "A stroma that is part of a sclera." [OBOL:automatic] synonym: "scleral stroma" EXACT [FMA:58365] synonym: "stroma of sclera" EXACT [FMA:58365] synonym: "subsantia propria" BROAD [] synonym: "subsantia propria sclerae" EXACT [FMA:58365] synonym: "substantia propria sclerae" EXACT LATIN [FMA:58365, FMA:TA] xref: FMA:58365 xref: http://linkedlifedata.com/resource/umls/id/C1704397 xref: http://www.snomedbrowser.com/Codes/Details/368851004 xref: NCIT:C33652 xref: UMLS:C1704397 {source="ncithesaurus:Substantia_Propria"} is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera [Term] id: UBERON:0010296 name: scleral skeletal element namespace: uberon relationship: part_of UBERON:0000019 ! camera-type eye property_value: IAO:0000232 "An eye adnexal structure, but not necessarily part of the eyeball" xsd:string [Term] id: UBERON:0010297 name: endochondral scleral ossicle namespace: uberon synonym: "sclerotic bones" RELATED PLURAL [ZFA:0001411] xref: TAO:0001411 xref: ZFA:0001411 is_a: UBERON:0010290 ! scleral ossicle property_value: UBPROP:0000001 "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001411", ontology="TAO", source="ZFIN:curator"} property_value: UBPROP:0000008 "The scleral ossicles [of teleosts] are reported to form indirectly by endochondral (Hall and Miyake, 1992) or by perichondral ossification (Patterson, 1977) from a cartilage element that is also present in the sclera. This is unlike the scleral ossicles of reptiles, which develop directly from ectomesenchyme (i.e., intramembranous ossification) and independently from the scleral cartilage" xsd:string {source="http://www.ncbi.nlm.nih.gov/pubmed/17051547"} [Term] id: UBERON:0010298 name: intramembranous scleral ossicle namespace: uberon comment: are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991) is_a: UBERON:0010290 ! scleral ossicle property_value: UBPROP:0000011 "The scleral ossicles [in reptiles]" xsd:string [Term] id: UBERON:0010305 name: subdivision of conjunctiva namespace: uberon def: "One of the three major regions of the conjunctiva." [http://en.wikipedia.org/wiki/Conjunctiva#Gross_anatomy] subset: grouping_class synonym: "conjunctiva region" EXACT [] synonym: "region of conjunctiva" EXACT [FMA:59023] xref: FMA:59023 xref: Gross_anatomy xref: http://www.snomedbrowser.com/Codes/Details/29445007 relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0010306 name: bulbar conjunctiva namespace: uberon def: "The conjunctiva covering the anterior surface of the sclera and the surface epithelium of the cornea." [MP:0013402] comment: covers the eyeball, over the sclera. This region of the conjunctiva is tightly bound to the underlying sclera by Tenon's capsule and moves with the eyeball movements. subset: pheno_slim synonym: "ocular conjunctiva" EXACT [http://en.wikipedia.org/wiki/Conjunctiva] xref: FMA:59024 xref: http://linkedlifedata.com/resource/umls/id/C0229275 xref: http://www.snomedbrowser.com/Codes/Details/264509009 xref: NCIT:C12902 xref: UMLS:C0229275 {source="ncithesaurus:Bulbar_Conjunctiva"} is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva [Term] id: UBERON:0010307 name: conjunctival fornix namespace: uberon def: "The space formed by the junction of the bulbar and palpebral portions of the conjunctiva, that of the upper lid being the superior conjunctival fornix (fornix conjunctivae superior) and that of the lower lid, the inferior conjunctival fornix (fornix conjunctivae inferior); the fornix is loose and flexible, allowing the free movement of the lids and eyeball." [MGI:anna] subset: pheno_slim synonym: "conjunctiva fornix" EXACT [MGI:anna] synonym: "forniceal conjunctiva" EXACT [MGI:anna] synonym: "fornix conjunctiva" EXACT LATIN [http://en.wikipedia.org/wiki/Conjunctiva] xref: EMAPA:37834 {source="MA:th"} xref: FMA:59016 xref: http://www.snomedbrowser.com/Codes/Details/276831007 is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva property_value: UBPROP:0000009 "It is loose and flexible, allowing the free movement of the lids and eyeball" xsd:string [Term] id: UBERON:0010308 name: os opticus namespace: uberon def: "Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue." [http://www.ncbi.nlm.nih.gov/pubmed/16496288] synonym: "Gemminger's ossicle" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] synonym: "os nervi optici" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] is_a: UBERON:0010298 ! intramembranous scleral ossicle property_value: UBPROP:0000008 "At present, it has been documented in 219 species from 35 families, including perching birds, woodpeckers, hummingbirds, toucans, kingfishers, and falcons (Tiemeier, 1950). Morphologically, this element varies in shape from a complete encircling element in some woodpeckers (e.g., Melanerpes eryth- rocephalus) to an abbreviated arc in Gallus" xsd:string [Term] id: UBERON:0010309 name: palpebral bone namespace: uberon def: "An ossified element investing the upper eyelid." [http://en.wikipedia.org/wiki/Palpebral_(bone), http://www.ncbi.nlm.nih.gov/pubmed/16496288] synonym: "palpebral" BROAD [] xref: Palpebral:(bone) relationship: part_of UBERON:0001712 ! upper eyelid property_value: IAO:0000116 "PMID:16496288 says 'invests' the eyelid, is this consistent across taxa?" xsd:string property_value: UBPROP:0000008 "The most extreme development of the palpebral is found in the armored dino- saur Euoplocephalus tutus, where the bone forms a quarter-sphere and adducts to completely occlude the or- bit (Coombs, 1972; Vickaryous and Russell, 2003). Notwithstanding the superficially similar position, palpe- brals and tarsal plates differ both anatomically and developmentally and are not considered homologous (Gauthier et al., 1988)" xsd:string [Term] id: UBERON:0010310 name: nictitating membrane lamina namespace: uberon def: "thin cartilage element that stiffens the nictitating membrane." [http://www.ncbi.nlm.nih.gov/pubmed/16496288] comment: Morphology notes: Generally, the cartilage consists of a long narrow appendix which is followed by a variable crossbar[PMID:11325064] synonym: "cartilago intercipiens" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] synonym: "nictitating membrane cartilage" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/11325064] relationship: part_of UBERON:0010207 ! nictitating membrane property_value: RO:0002175 NCBITaxon:40674 property_value: UBPROP:0000008 "these laminae may consist of purely hyaline cartilage (cats and horses) or may be heavily invested with elastic fibers (dogs, pigs, and cows; Schlegel et al., 2001)" xsd:string [Term] id: UBERON:0010311 name: scleral sesamoid bone namespace: uberon def: "A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle)" [http://www.ncbi.nlm.nih.gov/pubmed/16496288] synonym: "scleral sesamoid" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] synonym: "scleral sesamoid element" EXACT [] synonym: "sesamoideum esclerae" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/16496288] is_a: UBERON:0010290 ! scleral ossicle property_value: UBPROP:0000010 "During contraction, the scleral sesamoid bone acts to anchor the pyramidal nictitating muscle to the sclera and divert the tendon from pro- jecting over the cornea. It remains to be determined whether this is indeed a true sesamoid (sensu; Vickaryous and Olson, 2006), as the scleral sesa- moid is actually invested within the synovial tendon sheath and not the tendon per se" xsd:string [Term] id: UBERON:0010330 name: eyelid mesenchyme namespace: uberon def: "Mesenchyme that is part of a developing eyelid." [OBOL:automatic] xref: EMAPA:32759 is_a: UBERON:0003314 ! eye mesenchyme relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0010349 name: otic capsule pre-cartilage condensation namespace: uberon def: "A otic capsule endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 is_a: UBERON:0004637 ! otic capsule [Term] id: UBERON:0010366 name: conjunctival vasculature namespace: uberon def: "A vasculature that is part of a conjunctiva." [OBOL:automatic] synonym: "conjunctival veins" EXACT [FMA:70887] synonym: "conjunctival veins set" EXACT [FMA:70887] synonym: "set of conjunctival veins" EXACT [FMA:70887] synonym: "venae conjunctivales" EXACT LATIN [FMA:TA] xref: FMA:70887 is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0010367 name: conjunctival vein namespace: uberon def: "A vein that is part of a conjunctiva." [OBOL:automatic] synonym: "conjunctival blood vessel" BROAD [] xref: FMA:70887 xref: http://www.snomedbrowser.com/Codes/Details/149885003 relationship: part_of UBERON:0010366 ! conjunctival vasculature [Term] id: UBERON:0010379 name: superior tarsal muscle namespace: uberon def: "The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid." [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] synonym: "mueller muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] synonym: "Mueller's muscle" EXACT [FMA:49058] synonym: "Muller's muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] synonym: "musculus tarsalis superior" RELATED LATIN [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] synonym: "Müller's muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] synonym: "the superior tarsal muscle" RELATED [http://en.wikipedia.org/wiki/Superior_tarsal_muscle] xref: FMA:49058 xref: http://en.wikipedia.org/wiki/Superior_tarsal_muscle xref: http://www.snomedbrowser.com/Codes/Details/244775007 is_a: UBERON:0003386 ! smooth muscle of eye relationship: part_of UBERON:0004773 ! superior eyelid tarsus property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png xsd:anyURI property_value: IAO:0000116 "declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle)" xsd:string [Term] id: UBERON:0010409 name: ocular surface region namespace: uberon def: "The integrated unit (of the eye) that consists of the conjunctiva, the corneal surface, and the ocular mucosal adnexa including the lid margins and the meibomian gland openings, the lacrimal glands and the lacrimal drainage system, all which are critical to maintain ocular surface integrity and provide protection from external antigens and pathogenic microorganisms." [MP:0013754] subset: pheno_slim synonym: "eye surface" EXACT [MA:0002486] synonym: "eye surface region" EXACT [] synonym: "ocular surface" EXACT [] xref: EMAPA:35336 xref: MA:0002486 relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0010425 name: internal naris namespace: uberon def: "A naris that is located inside the nasal cavity and connects to the pharynx." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "choana" EXACT [] synonym: "choanae" RELATED PLURAL [] synonym: "internal choana" EXACT [] synonym: "internal nares" RELATED PLURAL [] synonym: "internal nostril" RELATED [] xref: NCIT:C32856 is_a: UBERON:0000003 ! naris property_value: UBPROP:0000007 "choanal" xsd:string property_value: UBPROP:0000008 "In humans the only internal naris is the posterior nasal aperture, which connects to the nasopharynx" xsd:string property_value: UBPROP:0000202 FMA:76585 [Term] id: UBERON:0010426 name: oropharyngeal choana namespace: uberon def: "opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [https://orcid.org/0000-0002-6601-2165] synonym: "apertura nasalis interna" RELATED [AAO:0000025] synonym: "choana of oropharynx" EXACT [] synonym: "cleft palate" RELATED [] synonym: "oropharyngeal naris" EXACT [] synonym: "palatal choana" EXACT [] synonym: "palatal cleft" RELATED [] is_a: UBERON:0010425 ! internal naris property_value: IAO:0000116 "todo - check AAO:0000025 apertura nasalis interna" xsd:string property_value: UBPROP:0000001 "Hole on the nasal capsule that connects the nasal and buccal cavites.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000025", ontology="AAO", source="AAO:LAP"} property_value: UBPROP:0000002 "relationship loss: subclass nasal opening (AAO:0000316)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000025", ontology="AAO"} property_value: UBPROP:0000009 "has function in pressure equalization in birds that fly to high altitudes" xsd:string [Term] id: UBERON:0010427 name: ciliary processes namespace: uberon def: "The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens." [http://en.wikipedia.org/wiki/Ciliary_processes] synonym: "ciliary process" RELATED [http://en.wikipedia.org/wiki/Ciliary_processes] synonym: "ciliary processes" EXACT [FMA:76551] synonym: "ciliary processes set" EXACT [FMA:76551] synonym: "processus ciliares" EXACT LATIN [FMA:TA] synonym: "processus ciliares" RELATED LATIN [http://en.wikipedia.org/wiki/Ciliary_processes] synonym: "set of ciliary processes" EXACT [FMA:76551] xref: Ciliary:processes xref: FMA:76551 xref: http://www.snomedbrowser.com/Codes/Details/280860001 relationship: part_of UBERON:0001775 ! ciliary body property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png xsd:anyURI [Term] id: UBERON:0010515 name: brille namespace: uberon def: "A layer of transparent, immovable disc-shaped skin or scale covering the eyes of some animals for protection, especially in animals without eyelids. The brille has evolved from a fusion of the upper and lower eyelids." [http://en.wikipedia.org/wiki/Brille] comment: there are transitional stages between total lid loss and full brille formation (Bellairs & Boyd, 1947). synonym: "eye cap" RELATED [] synonym: "ocular scale" RELATED [] xref: http://en.wikipedia.org/wiki/Brille relationship: part_of UBERON:0000019 ! camera-type eye property_value: UBPROP:0000008 "In snakes, there is no eyelid and the brille is clear and cannot be distinguished except when the animal is becoming ready for ecdysis. At that time, it becomes cloudy and is visible as a cover over the eye. When the snake moults, the brille is also shed as part of its skin. The Brilles protect their eyes from dust and dirt and gives them a 'glassy-eyed' blank appearance Snakes, flap-footed lizards, night lizards, and some skinks have brilles. All geckos except those in the subfamily Eublepharinae (eyelid geckos) possess brilles. Fish also have transparent eyelids called adipose eyelids." xsd:string [Term] id: UBERON:0010521 name: electroreceptor organ namespace: uberon def: "An organ that is capable of detecting electrical stimulus" [http://orcid.org/0000-0002-6601-2165] synonym: "electric sense organ" EXACT [] synonym: "electroreception organ" EXACT [] is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0010887 name: tragus namespace: uberon def: "A small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus." [http://en.wikipedia.org/wiki/Tragus_(ear)] subset: pheno_slim synonym: "tragal part of pinna" EXACT [FMA:60998] xref: FMA:60998 xref: http://linkedlifedata.com/resource/umls/id/C0229312 xref: http://www.snomedbrowser.com/Codes/Details/362541003 xref: NCIT:C33801 xref: Tragus:(ear) xref: UMLS:C0229312 {source="ncithesaurus:Tragus"} relationship: part_of UBERON:0001757 {source="FMA"} ! pinna property_value: UBPROP:0000008 "The tragus is generally believed to play a role in vertical sound localization in bats" xsd:string [Term] id: UBERON:0010893 name: median external naris namespace: uberon alt_id: UBERON:0012123 def: "Am unpaired external naris that lies in the midline of the head." [OBOL:automatic] subset: cyclostome_subset synonym: "median anterior naris" EXACT [] synonym: "median nostril" EXACT [] synonym: "nasohypophysial opening" EXACT [http://tolweb.org/Hyperoartia] is_a: UBERON:0005928 ! external naris property_value: RO:0002175 NCBITaxon:7762 [Term] id: UBERON:0010910 name: opisthotic namespace: uberon def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html] comment: see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." xref: AAO:0010835 relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule property_value: UBPROP:0000008 "teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece" xsd:string {source="palaeos"} [Term] id: UBERON:0010929 name: stapedius pre-muscle condensation namespace: uberon xref: EHDAA2:0001909 is_a: UBERON:0009506 ! mesenchyme of middle ear [Term] id: UBERON:0010935 name: tensor tympani pre-muscle condensation namespace: uberon xref: EHDAA2:0002002 is_a: UBERON:0009506 ! mesenchyme of middle ear [Term] id: UBERON:0010953 name: nasalis muscle namespace: uberon def: "The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into 'Compressor nasalis' and 'Dilator nasalis'." [http://en.wikipedia.org/wiki/Nasalis_muscle] synonym: "compressor naris" RELATED [http://en.wikipedia.org/wiki/Nasalis_muscle] synonym: "compressor narium minor" RELATED [http://en.wikipedia.org/wiki/Nasalis_muscle] synonym: "compressor nasi" RELATED [http://en.wikipedia.org/wiki/Nasalis_muscle] synonym: "musculus nasalis" RELATED LATIN [http://en.wikipedia.org/wiki/Nasalis_muscle] synonym: "nasalis" EXACT [FMA:46770] xref: FMA:46770 xref: http://www.snomedbrowser.com/Codes/Details/244732001 xref: Nasalis:muscle is_a: UBERON:0008522 {source="FMA"} ! nasal muscle property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png xsd:anyURI [Term] id: UBERON:0011060 name: perilymphatic channel namespace: uberon def: "A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space." [http://en.wikipedia.org/wiki/Perilymphatic_duct, MESH:A09.246.631.246.280] synonym: "cochlear aqueduct" RELATED [FMA:77822, MESH:A09.246.631.246.280] synonym: "ductus perilymphaticus" EXACT [AAO:0000136] synonym: "perilymphatic duct" RELATED [MESH:A09.246.631.246.280] synonym: "perilymphatic space" RELATED [MA:0000248] xref: AAO:0000136 xref: EMAPA:35677 xref: FMA:77822 xref: http://www.snomedbrowser.com/Codes/Details/368950002 xref: MA:0000248 xref: Perilymphatic:duct xref: ZFA:0005461 relationship: part_of UBERON:0001846 {source="MA"} ! internal ear property_value: IAO:0000116 "relationship to FMA class unclear" xsd:string property_value: UBPROP:0000001 "Duct that contains perilymph[ZFA:0005461, ZFIN:curator]." xsd:string {source="ZFA:0005461, ZFIN:curator"} [Term] id: UBERON:0011078 name: endolymphatic space namespace: uberon def: "endolymph-filled space contained by the membranous labyrinth." [http://medical-dictionary.thefreedictionary.com/endolymphatic+space] xref: FMA:77823 xref: http://www.snomedbrowser.com/Codes/Details/279856000 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth relationship: part_of UBERON:0002295 ! scala media property_value: UBPROP:0000007 "endolymphatic" xsd:string [Term] id: UBERON:0011167 name: septomaxilla bone namespace: uberon def: "Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis." [AAO:0000556, https://github.com/obophenotype/uberon/issues/97] comment: A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity synonym: "internasale" RELATED [AAO:0000556] synonym: "intranasal" RELATED [AAO:0000556] synonym: "lacrimale" RELATED [AAO:0000556] synonym: "le cornet" RELATED [AAO:0000556] synonym: "nariale" RELATED [AAO:0000556] synonym: "nasale" RELATED [AAO:0000556] synonym: "os internasale" RELATED [AAO:0000556] synonym: "os nariale" RELATED [AAO:0000556] synonym: "septomaxilla" EXACT [AAO:0000556] synonym: "septomaxillary" RELATED [AAO:0000556] synonym: "turbinale" RELATED [AAO:0000556] xref: AAO:0000556 relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0011186 name: Krause's gland namespace: uberon def: "small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva" [http://en.wikipedia.org/wiki/Krause's_glands] synonym: "accessory lacrimal gland" BROAD [FMA:59056] synonym: "conjunctival gland" BROAD [FMA:59056] synonym: "Krause gland" EXACT [FMA:59056] xref: FMA:59056 xref: http://linkedlifedata.com/resource/umls/id/C1306642 xref: http://www.snomedbrowser.com/Codes/Details/23492003 xref: http://www.snomedbrowser.com/Codes/Details/278359007 xref: Krause's:glands xref: NCIT:C32678 xref: UMLS:C1306642 {source="ncithesaurus:Gland_of_Krause"} is_a: UBERON:0013226 ! accessory lacrimal gland relationship: part_of UBERON:0001351 {source="ncithesaurus"} ! lacrimal sac [Term] id: UBERON:0011221 name: ora serrata of retina namespace: uberon def: "The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae." [http://en.wikipedia.org/wiki/Ora_serrata] synonym: "ora ciliaris retina" RELATED [http://en.wikipedia.org/wiki/Ora_serrata] synonym: "ora ciliaris retinae" RELATED [http://en.wikipedia.org/wiki/Ora_serrata] synonym: "ora serrata" EXACT [FMA:58600] synonym: "ora serrata retinae" EXACT LATIN [FMA:TA] xref: FMA:58600 xref: http://www.snomedbrowser.com/Codes/Details/280612002 xref: Ora:serrata relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0011222 name: intra-ocular muscle namespace: uberon synonym: "intrinsic muscle of eyeball" EXACT [] synonym: "intrinsic ocular muscle" EXACT [EMAPA:18808] xref: AAO:0010038 xref: EMAPA:18808 xref: FMA:49150 is_a: UBERON:0004277 ! eye muscle relationship: part_of UBERON:0003386 {source="EMAPA"} ! smooth muscle of eye property_value: UBPROP:0000001 "Muscles within the eye (bulbus oculi).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010038", ontology="AAO", source="AAO:EJS"} [Term] id: UBERON:0011255 name: Eimer's organ namespace: uberon def: "A sensory organ in which the epidermis is modified to form bulbous papillae. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue." [http://en.wikipedia.org/wiki/Eimer's_organ] xref: Eimer's:organ is_a: UBERON:0000020 {source="Wikipedia"} ! sense organ property_value: UBPROP:0000008 "present in many moles, and are particularly common in the star-nosed mole, which bears 30,000 of them on its unique tentacled snout" xsd:string [Term] id: UBERON:0011256 name: rhinarium namespace: uberon def: "Moist, hairless, crenelated area around nostrils of some mammals" [http://anthro.palomar.edu/primate/glossary.htm, http://en.wikipedia.org/wiki/Rhinarium] xref: http://en.wikipedia.org/wiki/Rhinarium relationship: part_of UBERON:0007827 ! external nose property_value: UBPROP:0000008 "Absent in Tarsiers" xsd:string [Term] id: UBERON:0011287 name: rostral organ namespace: uberon def: "A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelacanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve." [http://en.wikipedia.org/wiki/Rostral_organ] comment: classification as electric organ is putative xref: Rostral:organ is_a: UBERON:0010521 ! electroreceptor organ [Term] id: UBERON:0011385 name: parotidoauricular muscle namespace: uberon def: "Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species." [MURDOCH:1519] synonym: "parotidoauricular" EXACT [MA:0002352] synonym: "parotidoauricularis" EXACT [] xref: EMAPA:37692 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C1709470 xref: MA:0002352 xref: NCIT:C52976 xref: UMLS:C1709470 {source="ncithesaurus:Parotidoauricular"} is_a: UBERON:0001583 ! extrinsic auricular muscle [Term] id: UBERON:0011599 name: lenticular process of incus bone namespace: uberon def: "The long ventral process of the incus bone which articulates with the stapes" [http://palaeos.com/vertebrates/glossary/glossaryJL.html] synonym: "incus crus longum" EXACT [http://palaeos.com] synonym: "lenticular process" BROAD [] synonym: "lenticular process of incus" EXACT [FMA:52775] synonym: "processus lenticularis" BROAD [] synonym: "processus lenticularis (incus)" EXACT [FMA:52775] synonym: "processus lenticularis incudis" EXACT LATIN [FMA:52775, FMA:TA] xref: FMA:52775 xref: http://palaeos.com/vertebrates/bones/ear/images/Incus3.gif xref: http://www.snomedbrowser.com/Codes/Details/368928003 relationship: part_of UBERON:0001688 {source="FMA"} ! incus bone property_value: UBPROP:0000008 "the lenticular process may be homologous to the shaft of the stapes and result from fusion of the former quadrate- stapes articulation. This speculation is consistent with the observation that artiodactyls have a very short lenticular process (Thewissen & Hussain (1993)), with perhaps greater length to the corresponding process of the stapes" xsd:string {source="http://palaeos.com/vertebrates/bones/ear/incus.html"} [Term] id: UBERON:0011774 name: utriculosaccular duct namespace: uberon def: "A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear." [http://www.merriam-webster.com/medical/utriculosaccular%20duct] comment: Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection synonym: "Böttcher's canal" EXACT [http://en.wikipedia.org] synonym: "ductus utricosaccularis" EXACT [FMA:61243] synonym: "utricosaccular duct" EXACT [] synonym: "utricosaccular duct of membranous labyrinth" EXACT [FMA:61243] synonym: "utriculo-saccular duct" EXACT [] xref: EMAPA:37980 {source="MA:th"} xref: FMA:61243 xref: http://www.snomedbrowser.com/Codes/Details/279811007 xref: NCIT:C33845 relationship: part_of UBERON:0001862 {source="MP"} ! vestibular labyrinth [Term] id: UBERON:0011857 name: acinus of lacrimal gland namespace: uberon def: "An acinus that is part of a lacrimal gland." [OBOL:automatic] synonym: "lacrimal gland acinus" EXACT [FMA:85250] xref: FMA:85250 relationship: part_of UBERON:0001817 ! lacrimal gland [Term] id: UBERON:0011859 name: internal acoustic meatus namespace: uberon def: "The internal auditory meatus (also internal acoustic meatus, internal auditory canal, and internal acoustic canal) is a canal in the petrous bone of the temporal bone of the skull that carries nerves from inside the cranium towards the middle and inner ear compartments namely cranial nerve VII and cranial nerve VIII." [http://en.wikipedia.org/wiki/Internal_auditory_meatus] comment: Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908] subset: pheno_slim synonym: "internal acoustic canal" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] synonym: "internal acoustic meatus" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] synonym: "internal auditory canal" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] synonym: "internal auditory meatus" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] synonym: "porus acusticus internus" RELATED [http://en.wikipedia.org/wiki/Internal_auditory_meatus] xref: FMA:53163 xref: http://en.wikipedia.org/wiki/Internal_auditory_meatus xref: http://linkedlifedata.com/resource/umls/id/C0149591 xref: http://www.snomedbrowser.com/Codes/Details/264484004 xref: NCIT:C95443 xref: UMLS:C0149591 {source="ncithesaurus:Internal_Auditory_Canal_of_Ear"} relationship: part_of UBERON:0001846 {source="MP"} ! internal ear [Term] id: UBERON:0011865 name: corneal stroma collagen fibril namespace: uberon def: "The connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011650] subset: pheno_slim relationship: part_of UBERON:0001777 ! substantia propria of cornea [Term] id: UBERON:0011876 name: body of tongue namespace: uberon def: "The oral part of the tongue anterior to the terminal sulcus." [http://www.drugs.com/dict/body-of-tongue.html] synonym: "corpus linguae" EXACT LATIN [http://www.drugs.com/dict/body-of-tongue.html] synonym: "tongue body" EXACT [FMA:54641] xref: FMA:54641 xref: http://www.snomedbrowser.com/Codes/Details/362090005 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 {source="FMA"} ! tongue [Term] id: UBERON:0011877 name: margin of tongue namespace: uberon def: "The lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.." [http://www.drugs.com/dict/margin-of-tongue.html] synonym: "margo linguae" EXACT LATIN [http://www.drugs.com/dict/margin-of-tongue.html] synonym: "tongue margin" EXACT [FMA:54650] xref: FMA:54650 xref: http://www.snomedbrowser.com/Codes/Details/368572007 xref: http://www.snomedbrowser.com/Codes/Details/368594004 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0011892 name: anterior uvea namespace: uberon def: "Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris." [MP:0005194] subset: pheno_slim synonym: "anterior part of uveal tract" EXACT [] synonym: "anterior uveal tract" EXACT [] synonym: "anterior vascular layer of the eyeball" EXACT [] synonym: "anterior vascular tunic of the eye" EXACT [] synonym: "ciliary body and iris" RELATED [] synonym: "Haller tunica vascula" EXACT [MP:0005194] synonym: "tunica vasculosa bulbosa" EXACT [MP:0005194] synonym: "vasculosa oculi" RELATED [MP:0005194] synonym: "ventral uveal tract" EXACT [] xref: EMAPA:37417 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/280656002 relationship: part_of UBERON:0001768 {source="MP"} ! uvea [Term] id: UBERON:0011918 name: line of Schwalbe namespace: uberon def: "The thickened peripheral margin of the vitreous membrane of the cornea." [MP:0006250] subset: pheno_slim synonym: "Schwalbe line" EXACT [FMA:58422] synonym: "Schwalbe's line" EXACT [FMA:58422] synonym: "Schwalbe's ring" EXACT [MP:0006250] xref: EMAPA:37895 {source="MA:th"} xref: FMA:58422 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000964 ! cornea relationship: part_of UBERON:0005969 {source="MP"} ! eye trabecular meshwork property_value: UBPROP:0000012 "A line in FMA, a structure in MP" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0011922 name: cochlear basement membrane namespace: uberon def: "The the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes" [MP:0004598] subset: pheno_slim synonym: "basement membrane of cochlear labyrinth" EXACT [] synonym: "cochlea basement membrane" EXACT [] xref: EMAPA:37830 {source="MA:th"} relationship: part_of UBERON:0002499 ! cochlear labyrinth [Term] id: UBERON:0011931 name: nasal hair namespace: uberon def: "Hair in the nose" [http://en.wikipedia.org/wiki/Nasal_hair] subset: pheno_slim synonym: "hair of nose" EXACT [FMA:53670] synonym: "hair of vestibular part of nose" EXACT [FMA:53670] synonym: "nose hair" EXACT [FMA:53670] xref: FMA:53670 xref: http://www.snomedbrowser.com/Codes/Details/368885003 xref: Nasal:hair relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0012128 name: nose tip namespace: uberon def: "Outermost point on an external nose or snout" [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/109] subset: pheno_slim synonym: "apex nasi" EXACT LATIN [FMA:TA] synonym: "apex of nose" EXACT [FMA:59518] synonym: "nasal tip" EXACT [FMA:59518] synonym: "pirula" RELATED [https://www.abdn.ac.uk/bestiary/translat/84v.hti] synonym: "snout tip" RELATED [] synonym: "tip of nose" EXACT [FMA:59518] synonym: "tip of snout" RELATED [] xref: EMAPA:37915 {source="MA:th"} xref: FMA:59518 xref: http://www.snomedbrowser.com/Codes/Details/361926005 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0007827 {source="FMA"} ! external nose property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0012278 name: gland of nasal mucosa namespace: uberon def: "The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands." [http://en.wikipedia.org/wiki/Nasal_glands] subset: pheno_slim synonym: "glandula nasalis" EXACT LATIN [] synonym: "glandulae nasales" EXACT LATIN [] synonym: "nasal gland" BROAD [] xref: EMAPA:37871 {source="MA:th"} xref: FMA:321518 xref: http://linkedlifedata.com/resource/umls/id/C1522269 xref: http://www.snomedbrowser.com/Codes/Details/368881007 xref: Nasal:glands xref: NCIT:C22725 xref: UMLS:C1522269 {source="ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC"} relationship: part_of UBERON:0001826 ! nasal cavity mucosa [Term] id: UBERON:0012304 name: nasal diverticulum namespace: uberon def: "Caudally blind-ending cutaneous pouch lined with skin that occupies the nasoincisive notch. It's ventral and medial walls is formed by the alar fold. It's lateral wall is formed by the external nares and it's dorsal wall is formed by the straight fold. Lined by pigmented predominantly hairless skin. It has an external opening located on the dorsolateral aspect of the "true nostril". When the horse is exercising, obliteration of the nasal diverticulum greatly widens the nostrils increasing air intake[MURDOCH]." [ISBN:3899930983, MURDOCH:1367] synonym: "false nostril" RELATED [] synonym: "nasal trumpet" RELATED [ISBN:3899930983] synonym: "soft nose" RELATED [ISBN:3899930983] relationship: part_of UBERON:0005928 ! external naris [Term] id: UBERON:0012305 name: marginal cutaneous pouch of ear namespace: uberon def: "A fold of skin at the caudal border of the auricle." [ISBN:9783899930993] synonym: "cutaneous marginal pouch" RELATED [] synonym: "marginal cutaneous pouch" RELATED [] is_a: UBERON:0001459 ! skin of external ear [Term] id: UBERON:0012430 name: tunica fibrosa of eyeball namespace: uberon def: "The sclera and cornea form the fibrous tunic of the bulb of the eye; the sclera is opaque, and constitutes the posterior five-sixths of the tunic; the cornea is transparent, and forms the anterior sixth." [http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball] synonym: "corneosclera" RELATED [http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball] synonym: "fibrous layer of eyeball" EXACT [FMA:58102] synonym: "fibrous tunic" RELATED [http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball] synonym: "tunica fibrosa" BROAD [] xref: FMA:58102 xref: http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball xref: http://www.snomedbrowser.com/Codes/Details/361318005 relationship: part_of UBERON:0010230 ! eyeball of camera-type eye property_value: RO:0002175 NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} [Term] id: UBERON:0013120 name: eyelid submuscular connective tissue namespace: uberon xref: EMAPA:37534 {source="MA:th"} xref: MA:0001253 is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue [Term] id: UBERON:0013174 name: sigmoid process of tympanic bone namespace: uberon def: "A wavy crest externally on the tympanic bone of cetaceans." [http://palaeos.com/vertebrates/glossary/glossaryS.html] synonym: "sigmoid process" EXACT [] synonym: "sigmoid process of auditory bulla" EXACT [] relationship: part_of UBERON:0008959 ! auditory bulla [Term] id: UBERON:0013190 name: entotympanic bone namespace: uberon def: "Entotympanics are independent elements present in the auditory bullae of various eutherians" [https://doi.org/10.1023/A\:1020538313412] synonym: "entotyympanic" RELATED [] relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0013201 name: olfactory pathway namespace: uberon def: "Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb." [MESH:A08.186.211.577.699] synonym: "anterior perforated substance" RELATED [MESH:A08.186.211.577.699] synonym: "rhinencephalon" RELATED [MESH:A08.186.211.577.699] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2078 xref: http://en.wikipedia.org/wiki/Rhinencephalon xref: http://www.snomedbrowser.com/Codes/Details/281148007 xref: MESH:A08.186.211.577.699 relationship: part_of UBERON:0005725 ! olfactory system [Term] id: UBERON:0013208 name: Grueneberg ganglion namespace: uberon def: "An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures." [http://en.wikipedia.org/wiki/Gr%C3%BCneberg_ganglion] synonym: "GG" RELATED ABBREVIATION [NCBIBook:NBK55971] synonym: "Gruneberg ganglion" RELATED [MA:0002891] synonym: "Grüneberg ganglion" EXACT [] synonym: "septal organ of Gruneberg" RELATED [MA:0002891] xref: EMAPA:35765 xref: Gr%C3%BCneberg:ganglion xref: MA:0002891 is_a: UBERON:0015245 {source="MA", source="NCBIBook:NBK55971"} ! septal olfactory organ [Term] id: UBERON:0013211 name: cerumen gland namespace: uberon def: "A specialized sudoriferous gland (sweat glands) located subcutaneously in the external auditory canal." [http://en.wikipedia.org/wiki/Ceruminous_glands] subset: pheno_slim synonym: "cerumen-secreting gland" EXACT [] synonym: "ceruminous gland" EXACT [] synonym: "ceruminous sweat gland" EXACT [ISBN:0123813611] synonym: "earwax gland" EXACT [] xref: Ceruminous:glands xref: http://linkedlifedata.com/resource/umls/id/C0229352 xref: http://www.snomedbrowser.com/Codes/Details/368648008 xref: NCIT:C32294 xref: UMLS:C0229352 {source="ncithesaurus:Ceruminous_Gland"} relationship: part_of UBERON:0001691 ! external ear property_value: RO:0002174 NCBITaxon:10088 {source="https://github.com/obophenotype/mouse-anatomy-ontology/issues/99", source="ISBN:0123813611"} property_value: UBPROP:0000010 "Ceruminous glands are simple, coiled, tubular glands made up of an inner secretory layer of cells and an outer myoepithelial layer of cells. The glands drain into larger ducts, which then drain into the guard hairs that reside in the external auditory canal. Here they produce cerumen, or earwax, by mixing their secretion with sebum and dead epidermal cells" xsd:string [Term] id: UBERON:0013224 name: Ciaccio's gland namespace: uberon def: "Ciaccio's glands are small tubular accessory lacrimal glands (glandulae lacrimales accessoriae) found in the lacrimal caruncle of the eyelid. They are located in the upper border of the tarsus, approximately in the middle between the extremities of the tarsal glands. Sometimes they are situated slightly above the tarsus. There are usually 2 to 5 of these glands in the upper eyelid, and their function is to produce tears which are secreted onto the surface of the conjunctiva. They are named after Italian anatomist Giuseppe Vincenzo Ciaccio (1824b1901), who described these glands in 1874. They are sometimes called Wolfring's glands after Polish ophthalmologist Emilj von Wolfring (1832-1906), who described them during the same time period as did Ciaccio. Another type of accessory lacrimal gland are Krause's glands, which are smaller, more numerous than Ciaccio's glands and are found along the superior and inferior fornices of the conjunctival sac." [http://en.wikipedia.org/wiki/Ciaccio's_glands] synonym: "gland of Wolfring" EXACT [http://en.wikipedia.org/wiki/Ciaccio's_glands, ncithesaurus:Gland_of_Wolfring] synonym: "gland of Wolfring and Ciacco" EXACT [] synonym: "Wolfring's gland" EXACT [http://en.wikipedia.org/wiki/Ciaccio's_glands] xref: Ciaccio's:glands xref: http://www.snomedbrowser.com/Codes/Details/278361003 xref: NCIT:C32680 is_a: UBERON:0013226 ! accessory lacrimal gland is_a: UBERON:0013229 ! eyelid gland [Term] id: UBERON:0013226 name: accessory lacrimal gland namespace: uberon def: "Serous gland with distended lumen. It includes the gland of Krause in the lacrimal sac and the gland of Wolfring on the inner surface of the upper eyelid. (NCI)" [ncithesaurus:Accessory_Lacrimal_Gland] synonym: "glandulae lacrimales accessoriae" EXACT LATIN [] xref: FMA:320425 xref: http://linkedlifedata.com/resource/umls/id/C0266586 xref: http://www.snomedbrowser.com/Codes/Details/278360002 xref: NCIT:C74586 xref: UMLS:C0266586 {source="ncithesaurus:Accessory_Lacrimal_Gland"} is_a: UBERON:0001817 ! lacrimal gland property_value: IAO:0000116 "may be re-classified as a sibling of lacrimal gland" xsd:string [Term] id: UBERON:0013227 name: crypt of Henle namespace: uberon def: "Crypts of Henle are microscopic pockets found in scattered sections of the conjunctiva around the eyeball. They are responsible for secreting mucin, a proteinous substance that makes up the inner layer of tears. It coats the cornea to provide a hydrophilic layer that allows for even distribution of the tear film. The layer of mucin allows tears to glide evenly across the eye's surface[WP]." [http://en.wikipedia.org/wiki/Crypts_of_Henle] synonym: "crypts of Henle" EXACT [http://en.wikipedia.org/wiki/Crypts_of_Henle] synonym: "gland of Henle" EXACT [] synonym: "Henle's gland" EXACT [http://en.wikipedia.org/wiki/Crypts_of_Henle] xref: http://en.wikipedia.org/wiki/Crypts_of_Henle xref: http://www.snomedbrowser.com/Codes/Details/278362005 is_a: UBERON:0013226 ! accessory lacrimal gland [Term] id: UBERON:0013228 name: sweat gland of eyelid namespace: uberon def: "Glands of Moll, also known as ciliary glands, are modified apocrine sweat glands that are found on the margin of the eyelid. They are next to the base of the eyelashes, and anterior to the Meibomian glands within the distal eyelid margin. These glands are relatively large and tubular-shaped. The glands of Moll are named after Dutch oculist Jacob Anton Moll (1832-1914). Glands of Moll empty into the adjacent lashes. Glands of Moll and Zeis secrete lipid that adds to the superficial layer of the tear film, retarding evaporation. The glands of Moll are prone to infection and blockage of its duct with sebum and cell debris. Blockage of the gland's duct causes swelling which can manifest itself as a stye." [http://en.wikipedia.org/wiki/Gland_of_Moll] synonym: "ciliary gland" EXACT [FMA:59159] synonym: "ciliary gland of moll" EXACT [FMA:59159] synonym: "ciliary sweat gland of eyelid" EXACT [FMA:59159] synonym: "gland of Moll" EXACT [FMA:59159] synonym: "Moll's gland" EXACT [FMA:59159] xref: FMA:59159 xref: http://en.wikipedia.org/wiki/Gland_of_Moll xref: http://www.snomedbrowser.com/Codes/Details/280586002 xref: NCIT:C32679 is_a: UBERON:0003605 ! eye skin gland is_a: UBERON:0013229 ! eyelid gland [Term] id: UBERON:0013229 name: eyelid gland namespace: uberon def: "Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland)." [http://orcid.org/0000-0002-6601-2165] synonym: "gland of eyelid" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/280574000 is_a: UBERON:0004859 ! eye gland relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0013230 name: nictitans gland namespace: uberon def: "A gland producing tears in a third eyelid in the corner of each eye." [ncithesaurus:Gland_of_the_Third_Eyelid] comment: Disease notes: Prolapse of the Nicititans Gland is also known as Cherry Eye synonym: "gland of nictitating membrane" BROAD [] synonym: "gland of the third eyelid" BROAD [ncithesaurus:Gland_of_the_Third_Eyelid] synonym: "glandula palpebra tertia superficialis" RELATED LATIN [http://www.ncbi.nlm.nih.gov/pubmed/7559104] synonym: "superficial gland of the nictitating membrane" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/7559104] synonym: "superficial gland of the third eyelid" RELATED [ISBN:1118473523] xref: NCIT:C77616 is_a: UBERON:0013229 ! eyelid gland relationship: part_of UBERON:0010207 ! nictitating membrane property_value: IAO:0000232 "This gland is distinct from the other medial ocular gland, the Harderian gland, and is typified by clusters of glandular tissue within the nictitating membrane" xsd:string property_value: RO:0002175 NCBITaxon:10047 {source="ISBN:1118473523"} [Term] id: UBERON:0013231 name: sebaceous gland of eyelid namespace: uberon def: "Any of the sebaceous glands that are in the eyelid. Examples: gland of Zeis (services eyelashes), gland of Meibom (tarsal gland - unconnected to eyelids)." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0003484 ! eye sebaceous gland is_a: UBERON:0013229 ! eyelid gland [Term] id: UBERON:0013233 name: supraorbital gland namespace: uberon def: "A lateral nasal gland that removes sodium chloride from the bloodstream." [http://en.wikipedia.org/wiki/Supraorbital_gland] xref: Supraorbital:gland is_a: UBERON:0012278 ! gland of nasal mucosa property_value: UBPROP:0000009 "The gland's function is similar to that of the kidneys, though it is much more efficient at removing salt, allowing Penguins to survive without access to fresh water. Contrary to popular belief, the gland does not directly convert saltwater to freshwater. The term supraorbital refers to the area just above the eye socket (which is known as the orbit of the eye. ) Living in saltwater environments would naturally pose a large problem for penguins because the ingestion of saltwater would be detrimental to a penguin's health. Although penguins do not directly drink water, it is taken in when they engulf prey. As a result, saltwater enters their system and must be effectively excreted. The supraorbital gland has thus enabled the penguins' survival in such environments due to its water-filtering capability. The gland is located just above the eyes and surrounds a capillary in the head. This capillary constantly strains out the salt in the saltwater that a penguin takes in. Since the byproduct of the gland has roughly five times as much salt as would normally be found in the animal's fluids, the supraorbital gland is highly efficient. The penguin excretes the salt byproduct as a brine through its bill. Often, the fluid drips out, and this gives the appearance of a runny nose. However, the fluid may also be sneezed out. In the absence of saltwater, caused by captivity, the supraorbital gland will lie dormant as it has no other purpose. Having a dormant supraorbital gland does not negatively affect the health of a penguin" xsd:string [Term] id: UBERON:0013397 name: stratum argenteum of choroid namespace: uberon def: "A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults." [http://www.ncbi.nlm.nih.gov/pubmed/14738502] synonym: "choroid stratum argenteum" EXACT [] synonym: "stratum argenteum" BROAD [http://www.ncbi.nlm.nih.gov/pubmed/14738502] relationship: part_of UBERON:0001776 ! optic choroid property_value: RO:0002175 NCBITaxon:8065 property_value: UBPROP:0000008 "In species known to have a stratum argenteum as adults, like the toadfish (Toad- fishes), the tapetum lucidum is absent or vestigial and there is little choroidal melanin[PMID:14738502]" xsd:string [Term] id: UBERON:0013398 name: choroidal gland namespace: uberon def: "A gland that is part of a optic choroid." [OBOL:automatic] comment: Requires review is_a: UBERON:0002203 ! vasculature of eye relationship: part_of UBERON:0001776 ! optic choroid property_value: UBPROP:0000001 "a gland on the dorsal half of the fish eyeball[http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid]l" xsd:string {source="http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid"} property_value: UBPROP:0000001 "Teleosts bear a body of capillary adjacent to the optic nerve called the choroidal gland. Though its function is not known, it is believed to be a supplemental oxygen carrier[Wikipedia:Choroid#In_bony_fish]." xsd:string {source="In_bony_fish"} [Term] id: UBERON:0013399 name: blood vessel layer of choroid namespace: uberon synonym: "Haller's layer" NARROW [FMA:58435] synonym: "lamina choroideae vasculosa" EXACT LATIN [FMA:58435, FMA:TA] synonym: "lamina vasculosa (choroid)" EXACT [FMA:58435] synonym: "lamina vasculosa of choroid" EXACT [FMA:58435] synonym: "outer layer of choroid proper" EXACT [FMA:58435] synonym: "Sattler's layer" NARROW [FMA:58435] synonym: "vessel layer of choroid" EXACT [FMA:58435] xref: FMA:58435 relationship: part_of UBERON:0001776 {source="FMA"} ! optic choroid property_value: UBPROP:0000001 "a layer of medium-diameter blood vessels of the choroid, a layer of the eye[Wikipedia:Sattler's_layer]." xsd:string {source="Sattler's:layer"} [Term] id: UBERON:0013475 name: gustatory gland namespace: uberon def: "A serous salivary gland which resides adjacent to the moats surrounding the circumvallate papillae in the posterior one-third of the tongue, anterior to the terminal sulcus." [http://en.wikipedia.org/wiki/Von_Ebner's_gland] subset: pheno_slim synonym: "posterior deep lingual gland" EXACT [PMCID:PMC2667924] synonym: "posterior lingual serous gland" EXACT [MGI:anna] synonym: "von Ebner gland" EXACT [http://en.wikipedia.org/wiki/Von_Ebner's_gland] synonym: "von Ebner's gland" EXACT [http://en.wikipedia.org/wiki/Von_Ebner's_gland] xref: FMA:293448 xref: http://en.wikipedia.org/wiki/Von_Ebner's_gland is_a: UBERON:0003409 ! gland of tongue relationship: part_of UBERON:0010033 ! posterior part of tongue property_value: UBPROP:0000009 "posterior deep lingual glands produce lingual lipase, which hydrolyzes triacylglycerols in the acidic gastric lumen, the first step in the digestion of dietary fat (Hamosh & Scow, 1973; Hamosh & Burns, 1977). In view of their close proximity to the lingual lymphatic tissues, the glands were also thought to be involved in antimicrobial action and local immune response (Nair & Schroeder, 1983)[PMCID:PMC2667924]" xsd:string property_value: UBPROP:0000010 "a group of tubulo-acinar serous glands located beneath the circumvallate and foliate papillae of the tongue and their ducts open into the trough at the base of the papillae. The saliva from posterior deep lingual glands is known to modulate the microenvironment at taste reception sites, and affect chemoreception (Gurkan & Bradley, 1988) and it is an important source of growth factors for taste receptor cells (Morris-Wiman et al. 2000)[PMCID:PMC2667924]" xsd:string [Term] id: UBERON:0013476 name: dermal layer of tongue namespace: uberon def: "." [http://www.ncbi.nlm.nih.gov/pubmed/23153189] synonym: "tongue (dermal layer)" EXACT [] is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0013477 name: blowhole namespace: uberon def: "A hole at the top of a cetacean's head through which the animal breathes air" [http://en.wikipedia.org/wiki/Blowhole_(anatomy)] synonym: "blowhole slit" NARROW [] xref: Blowhole:(anatomy) is_a: UBERON:0005928 ! external naris property_value: UBPROP:0000008 "Baleen whales have two blowholes positioned in a V-shape while toothed whales have only one blowhole. The blowhole of a sperm whale, a toothed whale, is located left of centre in the frontal area of the snout, and is actually its left nostril, while the right nostril lacks an opening to the surface despite the fact that its nasal passage is otherwise well developed." xsd:string [Term] id: UBERON:0013598 name: accessory nucleus of optic tract namespace: uberon def: "One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions" [http://www.medilexicon.com/medicaldictionary.php?t=61308] synonym: "nuclei accessorii tractus optici" EXACT LATIN [] synonym: "nucleus of accessory optic system" EXACT [] synonym: "terminal nucleus of accessory optic tract" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=61308] xref: FMA:256154 relationship: part_of UBERON:0035594 ! accessory optic system property_value: UBPROP:0000008 "most vertebrates have at least one AON. Mammals have 4.[ISBN:0471888893]" xsd:string [Term] id: UBERON:0013599 name: dorsal accessory nucleus of optic tract namespace: uberon synonym: "dorsal terminal nucleus of accessory optic tract" EXACT [] synonym: "dorsal terminal nucleus of the accessory optic tract" EXACT [ABA:DT] synonym: "nucleus accessorius posterior tractus optici" EXACT LATIN [FMA:77651, FMA:TA] synonym: "posterior accessory nucleus of optic tract" EXACT [FMA:77651] synonym: "posterior terminal nucleus of accessory optic tract" EXACT [] xref: BAMS:DT xref: DMBA:16590 xref: FMA:77651 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1823 xref: MBA:75 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013600 name: lateral accessory nucleus of optic tract namespace: uberon synonym: "lateral terminal nucleus of the accessory optic tract" EXACT [ABA:LT] synonym: "nucleus accessorius lateralis tractus optici" EXACT LATIN [FMA:77652, FMA:TA] xref: BAMS:LT xref: DHBA:13236 xref: FMA:77652 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1843 xref: MBA:66 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013601 name: medial accessory nucleus of optic tract namespace: uberon comment: The medial terminal nucleus is usually very prominent but it is reduced in primates (except, curiously, the tarsier), megachiropterans, Cynocephalus and Bradypus. Metatherians have a large medial terminal nucleus[Pettigrew et al. (1989)] synonym: "medial terminal nucleus of the accessory optic tract" EXACT [ABA:MT] synonym: "nucleus accessorius medialis tractus optici" EXACT LATIN [FMA:77653, FMA:TA] xref: BAMS:MT xref: FMA:77653 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1069 xref: MBA:58 is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract [Term] id: UBERON:0013606 name: magnocellular layer of dorsal nucleus of lateral geniculate body namespace: uberon comment: Rods; necessary for the perception of movement, depth, and small differences in brightness[WP] synonym: "lateral geniculate nucleus magnocellular layer" EXACT [] synonym: "magnocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata magnocellularia" BROAD [] synonym: "strata magnocellularia nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76989, FMA:TA] xref: DHBA:10431 xref: FMA:76989 xref: PBA:128013078 relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013607 name: parvocellular layer of dorsal nucleus of lateral geniculate body namespace: uberon comment: Cones; long- and medium-wavelength ("red" and "green" cones); necessary for the perception of color and form (fine details).[WP] synonym: "parvocellular layer of lateral geniculate nucleus" EXACT [] synonym: "strata parvocellularia" BROAD [] synonym: "strata parvocellularia nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76992, FMA:TA] xref: FMA:76992 xref: PBA:128013091 relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013615 name: koniocellular layer of dorsal nucleus of lateral geniculate body namespace: uberon comment: Short-wavelength "blue" cones.[WP] synonym: "konioocellular layer of lateral geniculate nucleus" EXACT [] synonym: "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76988, FMA:TA] xref: FMA:76988 relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus [Term] id: UBERON:0013638 name: horny papilla of tongue namespace: uberon synonym: "horny papilla" EXACT [] synonym: "horny papillae" RELATED PLURAL [] is_a: UBERON:0001726 ! papilla of tongue property_value: UBPROP:0000008 "In carnivores, functions to hold on to meat as it is being cut by the teeth" xsd:string [Term] id: UBERON:0013639 name: mechanical papilla of tongue namespace: uberon synonym: "mechanical papilla" EXACT [] synonym: "mechanical papillae" RELATED PLURAL [] is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0013679 name: inner canthus of right eye namespace: uberon def: "A inner canthus that is part of a right eye." [OBOL:automatic] synonym: "medial angle of right eye" RELATED [FMA:59319] synonym: "medial canthus of right eye" RELATED [FMA:59319] synonym: "right inner canthus" EXACT [] synonym: "right medial canthus" EXACT [] synonym: "right medial palpebral commissure" EXACT [FMA:59319] xref: FMA:59319 is_a: UBERON:0005611 ! inner canthus relationship: part_of UBERON:0004549 ! right eye [Term] id: UBERON:0013680 name: inner canthus of left eye namespace: uberon def: "A inner canthus that is part of a left eye." [OBOL:automatic] synonym: "left inner canthus" EXACT [] synonym: "left medial canthus" EXACT [] synonym: "left medial palpebral commissure" EXACT [FMA:59320] synonym: "medial angle of left eye" RELATED [FMA:59320] synonym: "medial canthus of left eye" RELATED [FMA:59320] xref: FMA:59320 is_a: UBERON:0005611 ! inner canthus relationship: part_of UBERON:0004548 ! left eye [Term] id: UBERON:0013682 name: peripheral region of retina namespace: uberon def: "Region of retina that extends from central retina to ora serrata. Peripheral retina is dominated by rods and also has less ganglion cells and is not as thick as central retina. It is responsible for peripheral and night vision." [https://github.com/obophenotype/uberon/issues/1542, https://github.com/obophenotype/uberon/issues/216, https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/, XAO:0004458] synonym: "peripheral retina" EXACT [XAO:0004458] xref: http://www.snomedbrowser.com/Codes/Details/264141008 xref: XAO:0004458 relationship: part_of UBERON:0000966 ! retina property_value: UBPROP:0000001 "Anatomical region comprising the peripheral part of the retina[XAO:0004458]." xsd:string {source="XAO:0004458"} [Term] id: UBERON:0013731 name: basilar papilla namespace: uberon def: "The auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals." [http://en.wikipedia.org/wiki/Basilar_papilla] synonym: "basilar papillae" RELATED PLURAL [http://orcid.org/0000-0002-6601-2165] synonym: "papilla basilaris" EXACT LATIN [AAO:0011018] synonym: "sensory epithelium of recessus basilaris" RELATED [] xref: AAO:0011018 xref: VHOG:0001567 xref: XAO:0003145 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0001855 {source="MA-abduced"} ! cochlear duct of membranous labyrinth property_value: IAO:0000116 "consider classifying as a sensory epithelium" xsd:string property_value: UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011018", ontology="AAO", source="XAO:curator"} [Term] id: UBERON:0013732 name: vestibule of nasal cavity namespace: uberon def: "A tube leading from the external naris to the nasal cavity." [AAO:0000984, AAO:EJS] xref: AAO:0000984 relationship: part_of UBERON:0002268 {source="AAO"} ! olfactory organ [Term] id: UBERON:0013764 name: common crus of semicircular duct namespace: uberon def: "A nonampullary end of the superior or posterior semicircular ducts." [http://www.medilexicon.com/medicaldictionary.php?s=common+membranous+limb+of+semicircular+ducts] synonym: "common crus" BROAD [] synonym: "common membranous limb of membranous semicircular ducts" EXACT [] synonym: "common membranous limb of semicircular ducts" EXACT [FMA:71881] synonym: "crus membranaceum commune ductus semicircularis" EXACT LATIN [FMA:TA] synonym: "crus membranaceum commune ductuum semicircularium" EXACT LATIN [] xref: FMA:71881 xref: TAO:0005411 xref: ZFA:0005411 relationship: part_of UBERON:0001856 ! semicircular duct [Term] id: UBERON:0013766 name: epicanthal fold namespace: uberon def: "A fold of skin of the upper eyelid that partially covers the inner corner of the eye." [MGI:smb, VT:0006168] subset: pheno_slim synonym: "epicanthic fold" EXACT [] synonym: "epicanthus" EXACT [] synonym: "eye fold" EXACT [] synonym: "medial canthic fold" EXACT [FMA:59370] synonym: "palpebronasal fold" EXACT [FMA:59370] synonym: "plica palpebronasalis" EXACT LATIN [] xref: Epicanthic:fold xref: FMA:59370 xref: http://www.snomedbrowser.com/Codes/Details/74824007 is_a: UBERON:0001457 ! skin of eyelid relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0014389 name: gustatory papilla of tongue namespace: uberon def: "A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae." [MGI:smb, MP:0006256] synonym: "gustatory papilla" EXACT [] synonym: "gustatory papillae" RELATED PLURAL [] synonym: "taste papilla" EXACT [] synonym: "taste papillae" RELATED PLURAL [] xref: FMA:54822 is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0014397 name: lateral process of malleus namespace: uberon def: "A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane." [http://www.medilexicon.com/medicaldictionary.php?t=72288] synonym: "malleus process brevis" EXACT [MA:0002994] synonym: "process brevis" RELATED [http://medical-dictionary.thefreedictionary.com/processus+brevis] synonym: "processus lateralis (malleus)" EXACT [FMA:52770] synonym: "processus lateralis mallei" EXACT LATIN [] synonym: "processus lateralis malleus" EXACT LATIN [] synonym: "short process of malleus" EXACT [] synonym: "tuberculum mallei" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/processus+brevis] xref: FMA:52770 xref: http://www.snomedbrowser.com/Codes/Details/368921009 xref: MA:0002994 relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone [Term] id: UBERON:0014451 name: tongue taste bud namespace: uberon def: "A taste bud that is located on the tongue, situated on a gustatory papilla." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "gustatory papilla taste bud" EXACT [] synonym: "gustatory papillae taste bud" EXACT [MP:0006260] is_a: UBERON:0001727 ! taste bud relationship: part_of UBERON:0014389 ! gustatory papilla of tongue [Term] id: UBERON:0014452 name: gustatory epithelium of tongue namespace: uberon def: "A gustatory epithelium that is part of a tongue." [OBOL:automatic] synonym: "lingual gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:4099 xref: http://linkedlifedata.com/resource/umls/id/C1179150 xref: UMLS:C1179150 {source="BIRNLEX:4099"} is_a: UBERON:0003357 ! epithelium of tongue [Term] id: UBERON:0014521 name: anterodorsal nucleus of medial geniculate body namespace: uberon synonym: "ADMG" BROAD ABBREVIATION [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource] synonym: "anterodorsal nucleus of medial geniculate complex" EXACT [BIRNLEX:1600] synonym: "anterodorsal nucleus of the medial geniculate body" RELATED [NeuroNames:852] synonym: "nucleus corporis geniculati medialis, pars anterodorsalis" RELATED [BIRNLEX:1600] xref: BAMS:MGad xref: BIRNLEX:1600 xref: HBA:4446 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=852 {source="BIRNLEX:1600"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=852 relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body [Term] id: UBERON:0014624 name: basis modioli namespace: uberon synonym: "base of modiolus cochleae" EXACT [FMA:75640] synonym: "base of modiolus of cochlea" RELATED [BIRNLEX:2522] synonym: "basis cochleae" EXACT LATIN [FMA:75640, FMA:TA] synonym: "basis modioli" EXACT HUMAN_PREFERRED [BIRNLEX:2522] xref: BIRNLEX:2522 xref: FMA:75640 xref: http://linkedlifedata.com/resource/umls/id/C0458781 xref: http://www.snomedbrowser.com/Codes/Details/279799003 xref: UMLS:C0458781 {source="BIRNLEX:2522"} relationship: part_of UBERON:0006723 ! cochlear modiolus [Term] id: UBERON:0014626 name: base of cochlear canal namespace: uberon synonym: "base of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2556] xref: BIRNLEX:2556 xref: http://linkedlifedata.com/resource/umls/id/C0458766 xref: http://www.snomedbrowser.com/Codes/Details/279778001 xref: UMLS:C0458766 {source="BIRNLEX:2556"} relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014628 name: vestibular fissure of the cochlear canal namespace: uberon synonym: "vestibular fissure of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2558] xref: BIRNLEX:2558 xref: http://linkedlifedata.com/resource/umls/id/C0458761 xref: http://www.snomedbrowser.com/Codes/Details/279772000 xref: UMLS:C0458761 {source="BIRNLEX:2558"} relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014629 name: terminal part of the cochlear canal namespace: uberon synonym: "terminal part of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2559] xref: BIRNLEX:2559 xref: http://linkedlifedata.com/resource/umls/id/C0458768 xref: http://www.snomedbrowser.com/Codes/Details/279780007 xref: UMLS:C0458768 {source="BIRNLEX:2559"} relationship: part_of UBERON:0006106 ! cochlear canal [Term] id: UBERON:0014698 name: lacrimal caruncle namespace: uberon synonym: "caruncula lacrimalis" EXACT LATIN [FMA:TA] xref: FMA:77672 xref: http://www.snomedbrowser.com/Codes/Details/362530000 is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva [Term] id: UBERON:0014790 name: lingual septum namespace: uberon def: "The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ." [http://en.wikipedia.org/wiki/Lingual_septum] synonym: "median fibrous septum" RELATED [http://en.wikipedia.org/wiki/Lingual_septum] synonym: "septum of tongue" EXACT [FMA:54813] synonym: "septum of tongue" RELATED [http://en.wikipedia.org/wiki/Lingual_septum] synonym: "tongue septum" RELATED [http://en.wikipedia.org/wiki/Lingual_septum] xref: EMAPA:18274 xref: FMA:54813 xref: http://www.snomedbrowser.com/Codes/Details/368727001 xref: Lingual:septum is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0015016 name: stapes endochondral element namespace: uberon def: "A stapes bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "stapes element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "stapes skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0015017 name: incus endochondral element namespace: uberon def: "A incus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "incus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "incus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0015018 name: malleus endochondral element namespace: uberon def: "A malleus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus" RELATED [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "malleus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0015120 name: right outer canthus namespace: uberon def: "A outer canthus that is in_the_right_side_of a head." [OBOL:automatic] synonym: "lateral angle of right eye" RELATED [FMA:59317] synonym: "lateral canthus of right eye" RELATED [FMA:59317] synonym: "right angle of eye" EXACT [] synonym: "right lateral canthus" RELATED [FMA:59317] synonym: "right lateral palpebral commissure" EXACT [FMA:59317] xref: FMA:59317 is_a: UBERON:0006726 ! outer canthus property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0015121 name: left outer canthus namespace: uberon def: "A outer canthus that is in_the_left_side_of a head." [OBOL:automatic] synonym: "lateral angle of left eye" RELATED [FMA:59318] synonym: "lateral canthus of left eye" RELATED [FMA:59318] synonym: "left angle of eye" EXACT [] synonym: "left lateral canthus" RELATED [FMA:59318] synonym: "left lateral palpebral commissure" EXACT [FMA:59318] xref: FMA:59318 is_a: UBERON:0006726 ! outer canthus property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI [Term] id: UBERON:0015147 name: pinna hair namespace: uberon def: "A strand of hair that is part of a pinna." [OBOL:automatic] subset: pheno_slim synonym: "ear hair" RELATED [] is_a: UBERON:0022279 ! strand of hair on external ear relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0015151 name: Harderian gland duct namespace: uberon def: "A duct that is part of a Harderian gland. opens into the conjunctival sac at the base of the nictitating membrane." [http://www.ncbi.nlm.nih.gov/pubmed/7559104] synonym: "duct of Harder's gland" EXACT [] synonym: "duct of Harderian gland" EXACT [] synonym: "Harderian duct" RELATED [] relationship: part_of UBERON:0004187 ! Harderian gland property_value: UBPROP:0000008 "Typically a single duct per gland, but Harderian glands can have more than 1 duct, e.g. in lizards, amphisbaenids and primitive snakes (Bellairs & Boyd, 1947) and possibly some avian species (Burns, 1992)" xsd:string [Term] id: UBERON:0015155 name: conjunctival space namespace: uberon def: "A anatomical space that is enclosed by a conjunctiva." [OBOL:automatic] synonym: "cavity of conjunctival sac" EXACT [FMA:59083] synonym: "conjunctival sac cavity" EXACT [FMA:59083] synonym: "subbrillar space" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/7559104, NCBITaxon:8570] synonym: "subconjunctival space" EXACT [] xref: FMA:59083 xref: http://www.snomedbrowser.com/Codes/Details/280957009 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0015165 name: multi-unit eye namespace: uberon def: "An eye consisting of multiple light-sensing organs" [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/21062451] is_a: UBERON:0000970 ! eye property_value: RO:0002175 NCBITaxon:6340 {notes="present on tentacular crown", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} property_value: RO:0002175 NCBITaxon:6544 {notes="present on mantle edge in arcacean Bivalvia", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} property_value: RO:0002175 NCBITaxon:7588 {notes="The eyes (optic cushions) on the oral surface of Asteroida (Echinodermata), close to the base of the terminal tentacles, are also composed of a number of simple ocelli - as many as 80-200 in certain species", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} [Term] id: UBERON:0015169 name: tapetum namespace: uberon def: "Light reflecting layer found in a variety of different types of eye." [http://orcid.org/0000-0002-6601-2165] subset: functional_classification synonym: "tapetal layer" EXACT [] synonym: "tapetum layer" EXACT [] xref: SPD:0000343 relationship: part_of UBERON:0000970 ! eye property_value: UBPROP:0000007 "tapetal" xsd:string [Term] id: UBERON:0015170 name: nauplius eye namespace: uberon def: "An eye that consists of a cluster of three or four median eyes that form a single structural unit but are separated from one another by pigment layers" [http://www.ncbi.nlm.nih.gov/pubmed/21062451] synonym: "four-partite eye" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/21062451] synonym: "three-partite eye" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/21062451] is_a: UBERON:0000970 ! eye [Term] id: UBERON:0015216 name: nasal meatus namespace: uberon xref: EMAPA:18593 xref: FMA:53146 xref: http://www.snomedbrowser.com/Codes/Details/310212002 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose [Term] id: UBERON:0015219 name: middle nasal meatus namespace: uberon def: "The middle meatus is a nasal opening or canal situated between the middle and inferior conchae, and extends from the anterior to the posterior end of the latter. The lateral wall of this meatus can be satisfactorily studied only after the removal of the middle concha. On it is a curved fissure, the hiatus semilunaris, limited below by the edge of the uncinate process of the ethmoid and above by an elevation named the bulla ethmoidalis; the middle ethmoidal cells are contained within this bulla and open on or near to it. Through the hiatus semilunaris the meatus communicates with a curved passage termed the infundibulum, which communicates in front with the anterior ethmoidal cells and in rather more than fifty percent of skulls is continued upward as the frontonasal duct into the frontal air-sinus; when this continuity fails, the frontonasal duct opens directly into the anterior part of the meatus. Below the bulla ethmoidalis and hidden by the uncinate process of the ethmoid is the opening of the maxillary sinus (ostium maxillare); an accessory opening is frequently present above the posterior part of the inferior nasal concha." [http://en.wikipedia.org/wiki/Middle_nasal_meatus] synonym: "middle meatus" RELATED [http://en.wikipedia.org/wiki/Middle_nasal_meatus] synonym: "middle meatus of the nose" RELATED [http://en.wikipedia.org/wiki/Middle_nasal_meatus] xref: EMAPA:19277 xref: FMA:53139 xref: http://en.wikipedia.org/wiki/Middle_nasal_meatus xref: http://www.snomedbrowser.com/Codes/Details/361925009 is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015220 name: inferior nasal meatus namespace: uberon def: "The inferior meatus, the largest of the three meatuses of the nose, is the space between the inferior concha and the floor of the nasal cavity. It extends almost the entire length of the lateral wall of the nose, is broader in front than behind, and presents anteriorly the lower orifice of the nasolacrimal canal." [http://en.wikipedia.org/wiki/Inferior_nasal_meatus] synonym: "inferior meatus" RELATED [http://en.wikipedia.org/wiki/Inferior_nasal_meatus] xref: EMAPA:19278 xref: FMA:53140 xref: http://en.wikipedia.org/wiki/Inferior_nasal_meatus xref: http://www.snomedbrowser.com/Codes/Details/310214001 is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015221 name: common nasal meatus namespace: uberon xref: FMA:53141 is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015222 name: ventral nasal meatus namespace: uberon def: "The ventral nasal meatus is found between the ventral nasal concha and the dorsal surface of the hard palate.It connects the nasal vestibule with the nasopharynx. Rostrally it is narrow at the nasal vestibule and widens caudally towards the nasopharyngeal meatus. The ventral nasal meatus is the main passage for air. Apart from olfaction, the nasal cavity functions to warm the inhaled air as it passes through the meatuses over the vascular beds of the mucosa. The air is humidified by the vaporization of tears and serous nasal secretion. The air is cleaned throughout the scattered mucous glands. These glands secrete mucous through the nasal cavity and the mucous serves to trap the large particles that come into contact with it. PPP Clinically in the horse the ventral nasal meatus is the main passage through which a stomach tube can be passed to the pharynx and oesophagus and then to the stomach. This kind of a tube is commonly used when drenching a horse for colic, as well as having many other veterinary applications. The tube has to pass through the ventral nasal meatus to the nasopharyngeal meatus and the caudal nares to reach the pharynx and oesophagus. If the tube is accidentally passed into the dorsal or middle nasal meatuses it would pass to the ethmotubinates and cause massive haemorrhage." [MURDOCH:2178] is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015223 name: dorsal nasal meatus namespace: uberon def: "The dosal nasal meatus is a narrow passage bounded dorsally by the roof of the nasal cavity and ventrally by the dorsal concha. It terminates caudally at the junction of the inner plate of the frontal bone with the cribiform plate and lateral mass of the ethmoid bone. It is the shortest and shallowest of the three meatuses." [MURDOCH:659] is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015245 name: septal olfactory organ namespace: uberon def: "A spatially segregated cluster of sensory cells in the nasal cavity." [http://www.ncbi.nlm.nih.gov/books/NBK55971/] xref: EMAPA:35764 xref: MA:0001327 relationship: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0005726 {source="NCBIBook:NBK55971"} ! chemosensory system [Term] id: UBERON:0015246 name: septal organ of Masera namespace: uberon def: "A small island of olfactory neuroepithelium lying bilaterally at the ventral base of the nasal septum near the entrance of the nasopharynx." [NCBIBook:NBK55971] synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] xref: EMAPA:35766 xref: MA:0002890 is_a: UBERON:0015245 {source="MA"} ! septal olfactory organ relationship: part_of UBERON:0001997 ! olfactory epithelium property_value: UBPROP:0000008 "This olfactory apparatus has been observed in many mammals, including rat, mouse, hamster, deer mouse, rabbit, opossum, guinea pig, bandicoot, and koala (Rodolfo-Masera 1943; Adams and McFarland 1971; Bojsen-Moller 1975; Katz and Merzel 1977; Breipohl et al. 1983, 1989; Kratzing 1984a, 1984b; Taniguchi et al. 1993), but not in cat (Breipohl et al. 1983) or ferret (Weiler and Farbman 2003)" xsd:string {source="NCBIBook:NBK55971"} [Term] id: UBERON:0015430 name: levator auris longus muscle namespace: uberon def: "Muscle organ located on the dorsal surface of the head innervated by the facial nerve" [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] synonym: "LAL" RELATED ABBREVIATION [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle] synonym: "levator auris longus" EXACT [MA:0002758] xref: EMAPA:36627 xref: MA:0002758 relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0015445 name: anterior lingual gland duct namespace: uberon def: "A duct that is part of a anterior lingual gland." [OBOL:automatic] xref: EMAPA:37641 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/362180000 xref: MA:0002938 relationship: part_of UBERON:0006330 ! anterior lingual gland [Term] id: UBERON:0015476 name: nose skin namespace: uberon def: "A zone of skin that is part of a external nose." [OBOL:automatic] synonym: "external nasal skin" EXACT [FMA:24763] synonym: "skin of external nose" EXACT [FMA:24763] synonym: "skin of nose" EXACT [FMA:24763] xref: EMAPA:37684 {source="MA:th"} xref: FMA:24763 xref: MA:0003090 relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:0015751 name: inferior tarsal muscle namespace: uberon def: "A smooth muscle tissue that is part of a inferior eyelid tarsus." [OBOL:automatic] xref: FMA:49059 xref: http://www.snomedbrowser.com/Codes/Details/368783000 is_a: UBERON:0003386 ! smooth muscle of eye relationship: part_of UBERON:0004774 ! inferior eyelid tarsus [Term] id: UBERON:0015784 name: duct of olfactory gland namespace: uberon def: "A duct that is part of a olfactory gland." [OBOL:automatic] synonym: "olfactory gland duct" EXACT [] relationship: part_of UBERON:0002232 ! olfactory gland [Term] id: UBERON:0015785 name: acinus of olfactory gland namespace: uberon def: "A acinus that is part of a olfactory gland." [OBOL:automatic] synonym: "acinar part of olfactory gland" EXACT [] synonym: "olfactory gland acinus" EXACT [] relationship: part_of UBERON:0002232 ! olfactory gland [Term] id: UBERON:0015786 name: respiratory segment of nasal mucosa namespace: uberon def: "The portion of the nasal mucosa that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] synonym: "pars respiratoria tunicae mucosae nasi" EXACT LATIN [FMA:77198, FMA:TA] synonym: "respiratory zone of nasal mucosa" EXACT [FMA:77198] xref: FMA:77198 is_a: UBERON:0001826 ! nasal cavity mucosa property_value: UBPROP:0000010 "lined with ciliated pseudostratified columnar epithelium (respiratory epithelium). The respiratory segment has a very vascularized lamina propria allowing the venous plexuses of the conchal mucosa to engorge with blood, restricting airflow and causing air to be directed to the other side of the nose." xsd:string {source="Nasal:cavity"} [Term] id: UBERON:0015788 name: olfactory apparatus chamber namespace: uberon def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] xref: FMA:265136 relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0015807 name: ear epithelium namespace: uberon def: "A epithelium that is part of a ear." [OBOL:automatic] xref: EMAPA:32800 xref: MA:0003161 is_a: UBERON:0019304 ! sensory organ epithelium relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0015808 name: eye epithelium namespace: uberon def: "A epithelium that is part of a camera-type eye." [OBOL:automatic] xref: EMAPA:35957 xref: MA:0003162 is_a: UBERON:0007625 ! pigment epithelium of eye relationship: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0015813 name: middle ear epithelium namespace: uberon def: "A epithelium that is part of a middle ear." [OBOL:automatic] xref: EMAPA:35673 xref: MA:0003169 is_a: UBERON:0015807 ! ear epithelium relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0015814 name: outer ear epithelium namespace: uberon def: "A epithelium that is part of a external ear." [OBOL:automatic] xref: EMAPA:35956 xref: MA:0003170 is_a: UBERON:0015807 ! ear epithelium relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0015885 name: cymba conchae of pinna namespace: uberon synonym: "cymba conchae of auricle" EXACT [FMA:61082] xref: FMA:61082 xref: http://linkedlifedata.com/resource/umls/id/C0229317 xref: http://www.snomedbrowser.com/Codes/Details/362545007 xref: NCIT:C32420 relationship: part_of UBERON:0006203 {source="FMA"} ! conchal part of pinna [Term] id: UBERON:0016459 name: posterior pole of lens namespace: uberon def: "the central point on the posterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php?t=70707] subset: pheno_slim synonym: "polus posterior (lens)" EXACT [FMA:58898] synonym: "polus posterior lentis" EXACT LATIN [] xref: FMA:58898 xref: http://www.snomedbrowser.com/Codes/Details/302144008 xref: NCIT:C33375 is_a: UBERON:0019210 ! pole of lens [Term] id: UBERON:0016464 name: dorsum of nose namespace: uberon def: "The midline prominence of the nose, extending from the nasal root to the tip." [HP:0011119] subset: pheno_slim synonym: "nasal dorsum" EXACT [FMA:59517] synonym: "nasal ridge" RELATED [HP:0011119] xref: FMA:59517 xref: http://www.snomedbrowser.com/Codes/Details/368114008 relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] id: UBERON:0016466 name: antihelix namespace: uberon def: "On the pinna, a curved prominence of cartilage, parallel with and in front of the helix, is called the antihelix, also known as the anthelix; this divides above into two crura, the crura antihelicis, between which is a triangular depression, the fossa triangularis." [http://en.wikipedia.org/wiki/Antihelix] subset: pheno_slim synonym: "anthelix" RELATED [http://en.wikipedia.org/wiki/Antihelix] synonym: "antihelical part of pinna" EXACT [FMA:60995] synonym: "antihelix (auricula)" EXACT [FMA:60995] synonym: "antihelix of pinna" EXACT [FMA:60995] xref: FMA:60995 xref: http://en.wikipedia.org/wiki/Antihelix xref: http://linkedlifedata.com/resource/umls/id/C0229308 xref: http://www.snomedbrowser.com/Codes/Details/279612003 xref: NCIT:C32120 relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0016467 name: antitragus namespace: uberon def: "The antitragus is a feature of human ear anatomy. It is a small tubercle that points anteriorly. It is separated from the tragus by the intertragic notch." [http://en.wikipedia.org/wiki/Antitragus] subset: pheno_slim synonym: "antitragal part of pinna" EXACT [FMA:61001] xref: FMA:61001 xref: http://en.wikipedia.org/wiki/Antitragus xref: http://linkedlifedata.com/resource/umls/id/C0229314 xref: http://www.snomedbrowser.com/Codes/Details/362543000 xref: NCIT:C32121 relationship: part_of UBERON:0001757 {source="FMA"} ! pinna [Term] id: UBERON:0016490 name: auditory system namespace: uberon def: "is the sensory system for the sense of hearing." [NLXANAT:090817] xref: Auditory:system xref: EMAPA:36002 xref: FMA:7192 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2888 xref: http://linkedlifedata.com/resource/umls/id/C0587901 xref: MA:0002443 xref: NCIT:C12889 xref: NLXANAT:090817 xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA xref: UMLS:C0587901 {source="ncithesaurus:Auditory_System"} is_a: UBERON:0007037 ! mechanosensory system relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: UBPROP:0000012 "Auditory system is general anatomical term in FMA" xsd:string {external_ontology="FMA"} [Term] id: UBERON:0016567 name: statoconial membrane namespace: uberon def: "An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/2482728] comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/ synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948] synonym: "otolith membrane" NARROW [] xref: FMA:75570 relationship: part_of UBERON:0002518 ! otolith organ [Term] id: UBERON:0016568 name: gelatinous layer of statoconial membrane namespace: uberon xref: FMA:75588 relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane [Term] id: UBERON:0016569 name: subcupular meshwork of statoconial membrane namespace: uberon def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948] relationship: part_of UBERON:0016567 ! statoconial membrane [Term] id: UBERON:0016611 name: auditory hillocks, pharyngeal arch 1 derived namespace: uberon def: "A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0006208 ! auditory hillocks [Term] id: UBERON:0016612 name: auditory hillocks, pharyngeal arch 2 derived namespace: uberon def: "A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle] is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0006208 ! auditory hillocks [Term] id: UBERON:0016621 name: lunge feeding organ namespace: uberon def: "A fibrous capsule located between the jaws of rorqual whales that contains a gelatinous substance and papillae bearing mechanorecaptors." [http://www.ncbi.nlm.nih.gov/pubmed/22622577] is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0016622 name: lunge feeding organ papilla namespace: uberon def: "." [http://www.ncbi.nlm.nih.gov/pubmed/22622577] relationship: part_of UBERON:0016621 ! lunge feeding organ [Term] id: UBERON:0016637 name: lateral periolivary nucleus namespace: uberon def: "Lateral component of the periolivary nucleus" [http://medical-dictionary.thefreedictionary.com/periolivary+nuclei] xref: DHBA:12465 xref: FMA:226217 is_a: UBERON:0002971 {source="cjm"} ! periolivary nucleus [Term] id: UBERON:0016843 name: lateral nucleus of trapezoid body namespace: uberon def: "One of two potential parts of the trapezoid nucleus. Separated by an indistinct boundary, the other is the medial trapezoid nucleus ( Crosby-1962 ). The existence of the trapezoid nucleus in the human is disputed ( Bazwinsky-2003 )" [NeuroNames:2852] synonym: "lateral nucleus of the trapezoid body" RELATED [NeuroNames:2852] synonym: "lateral trapezoid nucleus" RELATED [NeuroNames:2852] synonym: "LNTB" EXACT ABBREVIATION [] xref: DHBA:12459 xref: DMBA:17274 xref: FMA:75730 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2852 is_a: UBERON:0007247 ! nucleus of superior olivary complex [Term] id: UBERON:0017629 name: mormyromast organ namespace: uberon def: "An innervated group of cells in a round capsule at the end of a jelly-filled tube opening to the skin surface of Gymnarchidae and Mormyridae." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "mormyromast" EXACT [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "snout organ" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:0010521 ! electroreceptor organ [Term] id: UBERON:0018104 name: parafoveal part of retina namespace: uberon def: "The intermediate belt surrounding the fovea centralis" [http://orcid.org/0000-0002-6601-2165] synonym: "parafoveal belt" RELATED [] synonym: "parafoveal retina" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/264120002 relationship: part_of UBERON:0000053 ! macula lutea property_value: UBPROP:0000010 "ganglion cell layer is composed of more than five rows of cells, as well as the highest density of cones" xsd:string [Term] id: UBERON:0018105 name: perifoveal part of retina namespace: uberon def: "The outermost region surrounding the fovea centralis" [http://orcid.org/0000-0002-6601-2165] synonym: "perifoveal belt" RELATED [] synonym: "perifoveal retina" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/280617008 relationship: part_of UBERON:0000053 ! macula lutea property_value: UBPROP:0000010 "the ganglion cell layer contains two to four rows of cells" xsd:string [Term] id: UBERON:0018107 name: foveola of retina namespace: uberon def: "A region of the fovea centralis that lies in the center of the fovea and contains only cone cells, and a cone-shaped zone of Müller cells" [http://orcid.org/0000-0002-6601-2165] synonym: "foveola" RELATED [] xref: http://en.wikipedia.org/wiki/Foveola xref: http://www.snomedbrowser.com/Codes/Details/399857002 relationship: part_of UBERON:0001786 ! fovea centralis property_value: UBPROP:0000008 "in humans is approximately 0.35 mm in diameter" xsd:string [Term] id: UBERON:0018108 name: superior auricular muscle namespace: uberon def: "The superior auricular muscle, the largest of the three auriculares muscles, is also thin and fan-shaped. Its fibers arise from the galea aponeurotica, and converge to be inserted by a thin, flattened tendon into the upper part of the cranial surface of the auricula." [http://en.wikipedia.org/wiki/Superior_auricular_muscle] synonym: "auricularis superior" EXACT [FMA:46855] xref: FMA:46855 xref: http://en.wikipedia.org/wiki/Superior_auricular_muscle xref: http://www.snomedbrowser.com/Codes/Details/244759009 is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle [Term] id: UBERON:0018109 name: anterior auricular muscle namespace: uberon def: "The anterior auricular muscle, the smallest of the three auriculares muscles, is thin and fan-shaped, and its fibers are pale and indistinct. It arises from the lateral edge of the galea aponeurotica, and its fibers converge to be inserted into a projection on the front of the helix." [http://en.wikipedia.org/wiki/Anterior_auricular_muscle_muscle] synonym: "auricularis anterior" EXACT [FMA:46856] xref: FMA:46856 xref: http://en.wikipedia.org/wiki/Anterior_auricular_muscle is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle [Term] id: UBERON:0018110 name: posterior auricular muscle namespace: uberon def: "The posterior auricular muscle consists of two or three fleshy fasciculi, which arise from the mastoid portion of the temporal bone by short aponeurotic fibers. They are inserted into the lower part of the cranial surface of the concha." [http://en.wikipedia.org/wiki/Posterior_auricular_muscle_muscle] synonym: "auricularis posterior" EXACT [FMA:46857] synonym: "post auricular muscle" RELATED [http://en.wikipedia.org/wiki/Posterior_auricular_muscle] synonym: "post-auricular muscle" RELATED [http://en.wikipedia.org/wiki/Posterior_auricular_muscle] xref: FMA:46857 xref: http://en.wikipedia.org/wiki/Posterior_auricular_muscle xref: http://www.snomedbrowser.com/Codes/Details/244761000 is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle [Term] id: UBERON:0018152 name: pars flaccida of tympanic membrane namespace: uberon def: "A small, triangular, flaccid portion of the tympanic membrane, or eardrum, lying above the malleolar folds, attached directly to the petrous bone at the notch of Rivinus." [http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane] synonym: "flaccid part" RELATED [http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane] synonym: "pars flaccida" RELATED [http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane] synonym: "pars flaccida (membrana tympanica)" EXACT LATIN [FMA:56721] synonym: "pars flaccida membranae tympanicae" EXACT LATIN [FMA:56721, FMA:TA] synonym: "Shrapnell's membrane" EXACT [FMA:56721] xref: FMA:56721 xref: http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane xref: http://www.snomedbrowser.com/Codes/Details/279594005 relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane property_value: UBPROP:0000008 "Size varies across mammals, with the sheep pars flaccida larger than the human" xsd:string {source="me:saf.html"} [Term] id: UBERON:0018153 name: pars tensa of tympanic membrane namespace: uberon synonym: "pars tensa (membrana tympanica)" EXACT [FMA:56722] synonym: "pars tensa membranae tympanicae" EXACT LATIN [FMA:56722, FMA:TA] xref: FMA:56722 xref: http://www.snomedbrowser.com/Codes/Details/362555006 relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane [Term] id: UBERON:0018154 name: ligament of middle ear namespace: uberon def: "A ligament that is part of a middle ear." [OBOL:automatic] relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0018155 name: posterior incudal ligament namespace: uberon def: "A fold of mucous membrane that runs from the fossa incudus to the incus." [ISBN:9781604061550] is_a: UBERON:0018154 ! ligament of middle ear [Term] id: UBERON:0018156 name: malleal ligament namespace: uberon def: "A skeletal ligament that attaches to the malleus." [ISBN:9781604061550] is_a: UBERON:0018154 ! ligament of middle ear [Term] id: UBERON:0018157 name: lateral malleal ligament namespace: uberon def: "A malleal ligament that extends from the bony margin of the notch of Rivinus to the neck of the malleus." [ISBN:9781604061550] is_a: UBERON:0018156 ! malleal ligament [Term] id: UBERON:0018158 name: superior malleal ligament namespace: uberon def: "A malleal ligament that extends from the tempen tympani to the head of the malleus." [ISBN:9781604061550] is_a: UBERON:0018156 ! malleal ligament [Term] id: UBERON:0018159 name: anterior malleal ligament namespace: uberon def: "A malleal ligament that extends from the anterior tympanic wall to the anterior process of the malleus." [ISBN:9781604061550] is_a: UBERON:0018156 ! malleal ligament [Term] id: UBERON:0018160 name: anterior process of malleus namespace: uberon synonym: "folian process" EXACT [FMA:52771] synonym: "processus anterior (malleus)" EXACT [FMA:52771] synonym: "processus anterior mallei" EXACT LATIN [FMA:52771, FMA:TA] synonym: "rau's process" EXACT [FMA:52771] xref: FMA:52771 xref: http://www.snomedbrowser.com/Codes/Details/368922002 relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone [Term] id: UBERON:0018231 name: labyrinthine artery namespace: uberon def: "A long slender branch of the anterior inferior cerebellar artery (85%-100% cases) or basilar artery (<15% cases), arises from near the middle of the artery; it accompanies the vestibulocochlear nerve through the internal acoustic meatus, and is distributed to the internal ear." [http://en.wikipedia.org/wiki/Labyrinthine_artery] synonym: "arteria auditiva interna" EXACT LATIN [http://en.wikipedia.org/wiki/Labyrinthine_artery] synonym: "arteria labyrinthi" EXACT LATIN [http://en.wikipedia.org/wiki/Labyrinthine_artery] synonym: "artery of inner ear" BROAD [FMA:50548] synonym: "internal auditory artery" EXACT [FMA:50548] xref: EMAPA:37093 {source="MA:th"} xref: FMA:50548 xref: http://www.snomedbrowser.com/Codes/Details/148672009 xref: Labyrinthine:artery xref: NCIT:C32834 relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0018233 name: gland of Zeis namespace: uberon def: "Glands of Zeis are unilobar sebaceous glands located on the margin of the eyelid. The glands of Zeis service the eyelash. These glands produce an oily substance that is issued through the excretory ducts of the sebaceous lobule into the middle portion of the hair follicle." [http://en.wikipedia.org/wiki/Gland_of_Zeis] subset: pheno_slim synonym: "ciliary sebaceous gland of eyelid" EXACT [FMA:59191] synonym: "gland of Zeis" EXACT [] synonym: "gland of Zeiss" EXACT [FMA:59191] synonym: "Zeis gland" EXACT [] xref: FMA:59191 xref: http://en.wikipedia.org/wiki/Gland_of_Zeis xref: http://www.snomedbrowser.com/Codes/Details/281070008 is_a: UBERON:0013231 ! sebaceous gland of eyelid [Term] id: UBERON:0018323 name: hyoid articular area namespace: uberon def: "Area on the otic capsule for the articulation of the hyoid" [PHENOSCAPE:alex] xref: UBERONTEMP:e1c1764a-61b5-4dce-8a59-7ca5a9de0a0b relationship: part_of UBERON:0004637 ! otic capsule [Term] id: UBERON:0018339 name: metotic fissure namespace: uberon def: "An embryonic fissure between the otic capsule and the arches which develop into the occipital bones. The fissure may persist into adulthood. It is also referred to as the 'lateral otic fissure' The metotic fissure opens into the vestibular fontanelle, if the fontanelle is present. (Johanson et al. (2003)). Otherwise it opens to the metotic foramen." [http://palaeos.com/vertebrates/glossary/glossaryM.html, PHENOSCAPE:alex] xref: UBERONTEMP:41980771-8a82-40d2-877e-3156cc80857b relationship: part_of UBERON:0004637 ! otic capsule [Term] id: UBERON:0018356 name: rostral entotympanic element namespace: uberon def: "An entotympanic that arises in forward part of tympanic floor. It may be intimately fused witA cartilage of tube during development(MacPhee (1981: 62)) in contrast to a caudal entotympanic arising in the rear tympanic floor. From O'Leary et al. 2012" [PHENOSCAPE:Alex] xref: UBERONTEMP:c5825cfa-edc2-4717-8625-90ac3f8b6dd3 is_a: UBERON:0013190 ! entotympanic bone [Term] id: UBERON:0018357 name: sensory pore namespace: uberon def: "." [PHENOSCAPE:Wasila] synonym: "sensory canal pore" EXACT [PHENOSCAPE:Wasila] xref: UBERONTEMP:021ff296-2e02-4da5-af3b-b3e7220ac03b relationship: part_of UBERON:0001032 ! sensory system [Term] id: UBERON:0018369 name: upper lateral line namespace: uberon def: "dorsal sensory canal line in fish, dorsal to ventral lateral lane" [PHENOSCAPE:Nizar] xref: UBERONTEMP:2e283d18-0137-43ce-948f-1704f1d0a0a7 is_a: UBERON:0010202 ! lateral line property_value: IAO:0000116 "consider merging with UBERON:0003095 ! dorsal lateral line" xsd:string [Term] id: UBERON:0018370 name: ventral lateral line namespace: uberon def: "ventral sensory canal line in fish, ventral to dorsal lateral lane" [PHENOSCAPE:Wasila] xref: UBERONTEMP:61c755ec-848e-4262-89e4-be2267041e64 is_a: UBERON:0010202 ! lateral line [Term] id: UBERON:0018374 name: sallet namespace: uberon def: "A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 " [ISBN:9780387714691, PHENOSCAPE:Alex] xref: UBERONTEMP:caa10252-5f7e-4a55-a72c-cf7986a89363 relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea property_value: RO:0002175 NCBITaxon:35033 {source="ISBN:9780387714691"} property_value: RO:0002175 NCBITaxon:8561 {source="ISBN:9780387714691"} [Term] id: UBERON:0018389 name: interoceptor namespace: uberon def: "A sensory receptor that detects stimulus within the body. Examples of stimuli that would be detected by interoceptors include blood pressure and blood oxygen level." [http://en.wikipedia.org/wiki/Interoceptor] synonym: "enteroceptor" EXACT [FMA:84656] synonym: "visceroceptor" EXACT [FMA:84656] xref: FMA:84656 xref: http://en.wikipedia.org/wiki/Interoceptor relationship: part_of UBERON:0036255 ! interoceptive system [Term] id: UBERON:0018391 name: chemoreceptor namespace: uberon def: "A sensory receptor that detects chemical stimulus within the body." [http://orcid.org/0000-0002-6601-2165] xref: FMA:85604 xref: MESH:A08.800.550.700.120 is_a: UBERON:0018389 {source="FMA"} ! interoceptor property_value: UBPROP:0000001 "Cells specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." xsd:string {source="MESH:A08.800.550.700.120"} [Term] id: UBERON:0018392 name: arterial baroreceptor namespace: uberon def: "Arterial baroreceptors are stretch receptors that are stimulated by distortion of the arterial wall when pressure changes." [http://en.wikipedia.org/wiki/Baroreceptor#Arterial_baroreceptors] synonym: "arterial stretch receptor" RELATED [MESH:A08.800.050.800.900.700] is_a: UBERON:0004019 ! baroreceptor [Term] id: UBERON:0018393 name: low-pressure baroreceptor namespace: uberon def: "found in large systemic veins, in pulmonary vessels, and in the walls of the right atrium and ventricles of the heart (the atrial volume receptors)." [http://en.wikipedia.org/wiki/Baroreceptor#Low-pressure_baroreceptors] is_a: UBERON:0004019 ! baroreceptor [Term] id: UBERON:0018394 name: vein baroreceptor namespace: uberon def: "A baroreceptor that located_in a vein." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018395 name: cardiac baroreceptor namespace: uberon def: "A baroreceptor that located_in a heart." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018396 name: pulmonary baroreceptor namespace: uberon def: "A baroreceptor that located_in a pulmonary vascular system." [OBOL:automatic] is_a: UBERON:0018393 ! low-pressure baroreceptor [Term] id: UBERON:0018508 name: foramen of nasal bone namespace: uberon def: "A vascular foramen opening on the outer surface of a nasal bone." [http://medical-dictionary.thefreedictionary.com/nasal+foramina] synonym: "foramen of nasal bone" RELATED [] synonym: "foramina nasalia" EXACT LATIN [http://en.wikipedia.org/wiki/Nasal_foramina] synonym: "nasal foramen" EXACT [] synonym: "nasal foramina" RELATED PLURAL [FMA:57653] xref: FMA:57653 xref: Nasal:foramina relationship: part_of UBERON:0001681 ! nasal bone [Term] id: UBERON:0018655 name: pars endotympanica namespace: uberon def: "This is present in the cat and forms the large medial part of the Bulla tympanica. It is not to be regarded as a part of the pars tympanica, which ossifies directly from connective tissue, whereas the Pars endotympanica is preformed in cartilage. The Septum bullae in the cat is formed by the Pars tympanica as well as by the Pars endotympanica(NOMINA ANATOMICA VETERINARIA (2005))." [http://orcid.org/0000-0002-6601-2165] relationship: part_of UBERON:0013190 ! entotympanic bone [Term] id: UBERON:0018663 name: recessus basilaris namespace: uberon def: "An opening of the otic duct within the inner ear. The recessus basilaris can open to the saccule (in frogs) or the lagena (in salamanders and caecilians). The sensory epithelium of the recessus basilaris is the basilar papilla (or papilla basilaris). Reference: Lewis, E.R. and R.E. Lombard. 1988. The amphibian inner ear. Pp. 93-123 in Fritszch, B., et al. (eds.), The Evolution of the Amphibian Auditory System. Wiley & Sons. [curated by D. Blackburn]" [PHENOSCAPE:wd] synonym: "basilar papillar recess" EXACT [] relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0019206 name: tongue papilla epithelium namespace: uberon xref: EMAPA:35869 xref: MA:0003178 is_a: UBERON:0003357 ! epithelium of tongue relationship: part_of UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0019207 name: chorioretinal region namespace: uberon def: "The part of the eye that consists of both the retina and the optic choroid" [http://orcid.org/0000-0002-6601-2165, UBERON:drseb] subset: pheno_slim synonym: "chorioretina" EXACT [] synonym: "choroid and retina" EXACT [] synonym: "retinachoroid" EXACT [] synonym: "retinachoroidal region" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/110701000 relationship: part_of UBERON:0010230 ! eyeball of camera-type eye [Term] id: UBERON:0019208 name: anterior pole of lens namespace: uberon def: "the central point on the anterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php] synonym: "polus anterior (lens)" EXACT [FMA:58897] synonym: "polus anterior lentis" EXACT LATIN [] xref: FMA:58897 xref: http://www.snomedbrowser.com/Codes/Details/302143002 xref: NCIT:C32103 is_a: UBERON:0019210 ! pole of lens [Term] id: UBERON:0019210 name: pole of lens namespace: uberon def: "A central point or region on the anterior or posterior surface of the lens" [http://orcid.org/0000-0002-6601-2165] synonym: "lens pole" EXACT [] synonym: "lens zone" EXACT [FMA:58067] synonym: "zone of lens" RELATED [FMA:58067] xref: FMA:58067 xref: http://www.snomedbrowser.com/Codes/Details/280630009 relationship: part_of UBERON:0000965 ! lens of camera-type eye [Term] id: UBERON:0019211 name: supcapsular region of anterior region of lens namespace: uberon comment: See https://github.com/obophenotype/uberon/issues/599 relationship: part_of UBERON:0019208 ! anterior pole of lens [Term] id: UBERON:0019212 name: supcapsular region of posterior region of lens namespace: uberon comment: See https://github.com/obophenotype/uberon/issues/599 relationship: part_of UBERON:0016459 ! posterior pole of lens [Term] id: UBERON:0019254 name: upper eyelash namespace: uberon subset: pheno_slim synonym: "eyelash of upper eyelid" EXACT [FMA:59408] synonym: "hair of upper eyelid" RELATED [] synonym: "upper eyelid cilia" RELATED PLURAL [] synonym: "upper eyelid cilium" EXACT [] synonym: "upper eyelid eyelash" EXACT [FMA:59408] xref: FMA:59408 relationship: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0019255 name: lower eyelash namespace: uberon subset: pheno_slim synonym: "eyelash of lower eyelid" EXACT [FMA:59409] synonym: "hair of lower eyelid" RELATED [] synonym: "lower eyelid cilia" RELATED PLURAL [] synonym: "lower eyelid cilium" EXACT [] synonym: "lower eyelid eyelash" EXACT [FMA:59409] xref: FMA:59409 relationship: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0019304 name: sensory organ epithelium namespace: uberon xref: EMAPA:35952 xref: MA:0003174 relationship: part_of UBERON:0000020 ! sense organ [Term] id: UBERON:0019306 name: nose epithelium namespace: uberon xref: EMAPA:35958 xref: MA:0003171 is_a: UBERON:0019304 ! sensory organ epithelium relationship: part_of UBERON:0000004 ! nose [Term] id: UBERON:0019307 name: epithelium of external nose namespace: uberon def: "Epithelial layer that is part of the external part of the nose." [http://orcid.org/0000-0002-6601-2165] synonym: "epithelium of skin of external nose" EXACT [FMA:63143] xref: FMA:63143 is_a: UBERON:0019306 ! nose epithelium relationship: part_of UBERON:0007827 ! external nose [Term] id: UBERON:0019315 name: meibum namespace: uberon def: "an oily substance that prevents evaporation of the eye's tear film" [http://www.ncbi.nlm.nih.gov/pubmed/20664693] synonym: "tarsal gland secretion" RELATED [] is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0000019 ! camera-type eye property_value: UBPROP:0000009 "provides barrier to prevent dessication of cornea[ISBN:0123813611]" xsd:string property_value: UBPROP:0000015 "part of surface lipid layer of tear film" xsd:string [Term] id: UBERON:0019324 name: intraorbital lacrimal gland namespace: uberon def: "A lacrimal gland located superficially at the lateral canthus, where both the lacrimal gland and Harderian gland ducts open." [ISBN:0123813611, MGI:anna] xref: EMAPA:36578 xref: http://linkedlifedata.com/resource/umls/id/C1882706 xref: MA:0003109 xref: NCIT:C60574 is_a: UBERON:0001817 {source="MA"} ! lacrimal gland [Term] id: UBERON:0019325 name: exorbital lacrimal gland namespace: uberon def: "A lacrimal gland located subcutaneously at the anteroventral base of the ear adjacent to the parotid gland." [ISBN:0123813611, MGI:anna] synonym: "exorbital gland" RELATED [] synonym: "exorbital lacrimal gland" EXACT [MGI:anna] synonym: "extraorbital gland" RELATED [] synonym: "extraorbital lacrimal gland" RELATED [] xref: EMAPA:36577 xref: http://linkedlifedata.com/resource/umls/id/C1882664 xref: MA:0003110 xref: NCIT:C60564 is_a: UBERON:0001817 {source="MA"} ! lacrimal gland property_value: UBPROP:0000008 "more than 10% of rat exorbital gland appears to be composed of harderian gland-like cells by 22 months of age (Coujard 1974; Sashima et al. 1989).[PMID:7559104]" xsd:string [Term] id: UBERON:0022273 name: lacrimal lake namespace: uberon def: "A small cistern-like area of the conjunctiva at the medial angle of the eye, in which the tears collect after bathing the front surface of the eyeball and the conjunctival sac." [MGI:anna] synonym: "lacrymal lake" EXACT [MGI:anna] synonym: "lacus lacrimalis" EXACT LATIN [] xref: FMA:59402 xref: http://www.snomedbrowser.com/Codes/Details/368792002 xref: Lacrimal:lake relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0022274 name: lacrimal papilla namespace: uberon def: "A small conical elevation at the basal angle of the lacrimal lake." [http://en.wikipedia.org/wiki/Lacrimal_papilla] synonym: "papilla lacrimalis" EXACT LATIN [http://en.wikipedia.org/wiki/Lacrimal_papilla] xref: FMA:59407 xref: http://www.snomedbrowser.com/Codes/Details/362533003 xref: Lacrimal:papilla relationship: part_of UBERON:0001850 ! lacrimal drainage system [Term] id: UBERON:0022279 name: strand of hair on external ear namespace: uberon synonym: "hair of external ear" EXACT [FMA:53671] synonym: "hair of tragus" EXACT [FMA:53671] synonym: "tragus hair" EXACT [FMA:53671] xref: FMA:53671 relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0022284 name: lacrimal gland bud namespace: uberon def: "the single bud-like invagination of the conjunctival fornix epithelium at the temporal aspect of the eye that signals lacrimal gland formation (Int Rev Cytol. 1996;168:1-80. Cell biology of the harderian gland)" [MGI:anna] xref: EMAPA:35464 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001750 ! lacrimal apparatus property_value: UBPROP:0000008 "in mouse, the primary bud arises around E13.5 and extends caudally into the surrounding neural-crest derived periocular mesenchyme; between E15.5 and E16.5 the bud undergoes branching morphogenesis, forming both a major extra-orbital lobe and a minor intraorbital lobe" xsd:string [Term] id: UBERON:0022287 name: tear film namespace: uberon def: "An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet." [http://orcid.org/0000-0002-6601-2165] synonym: "precorneal film" EXACT [MGI:anna] is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001801 ! anterior segment of eyeball relationship: part_of UBERON:0010409 ! ocular surface region property_value: UBPROP:0000001 "the thin acellular fluid layer that adheres to the most superficial layer of the corneal epithelium and lubricates and protects the ocular surface; the film is generally composed of three layers: (i) an inner mucous layer, secreted largely by the conjunctival goblet cells with contributions from the lacrimal glands, which coats the cornea, provides a hydrophobic layer, and allows for even distribution of the tear film; (ii) a middle aqueous layer, secreted by the lacrimal glands, which keeps the corneal surface moist, and provides a mechanism for oxygenation and nutrient exchange with the avascular anterior corneal tissue; and (iii) an outer lipid layer, secreted principally by the Meibomian (tarsal) glands although lipid tear elements also are contributed by the Harderian glands; tear film lipids form a monolayer on the tear surface, and function by enhancing the surface tension which supports the integrity of the tear film against collapse due to gravity and also slows down the loss of the tear film by evaporation; in addition , the lipid layer provides a glassy, smooth interface between the air and the transparent cornea" xsd:string {source="MGI:anna"} property_value: UBPROP:0000009 "maintenance of the avascular transparent corneal epithelium" xsd:string property_value: UBPROP:0000010 "The tear film is structurally complex with three distinct layers: a surface lipid layer, a middle aqueous layer, and an inner mucus layer[http://physiologyonline.physiology.org/content/13/2/97]" xsd:string [Term] id: UBERON:0022288 name: surface of eyeball namespace: uberon synonym: "surface of region of wall of eyeball" RELATED [FMA:58315] xref: FMA:58315 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0010230 ! eyeball of camera-type eye [Term] id: UBERON:0022434 name: primary superior olive namespace: uberon def: "Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus." [BIRNLEX:900] synonym: "superior olive" BROAD INCONSISTENT [BIRNLEX:900] xref: BAMS:SOl xref: BIRNLEX:900 xref: DHBA:12468 xref: HBA:9182 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=570 xref: http://linkedlifedata.com/resource/umls/id/C0228444 relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex property_value: UBPROP:0000012 "Wikipedia includes Medial nucleus of the trapezoid body. Wikipedia:Superior_olivary_complex#Primary_nuclei" xsd:string property_value: UBPROP:0000013 "many sources refer to this simply as the 'superior olive' or the 'superior olivary nucleus'. However, this is confusing as superior olive is sometimes used to denote the full SOC, which includes periolvary nuclei[https://github.com/obophenotype/uberon/issues/631]" xsd:string [Term] id: UBERON:0022437 name: dorsal periolivary nucleus namespace: uberon def: "." [http://en.wikipedia.org/wiki/Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29] synonym: "DPeO" RELATED ABBREVIATION [DMBA:17260] synonym: "DPO" RELATED ABBREVIATION [] synonym: "nuclei periolivares" BROAD LATIN [FMA:TA] synonym: "peri-olivary nuclei" BROAD [FMA:72475] xref: DHBA:15561 xref: DMBA:17260 xref: FMA:72475 is_a: UBERON:0007247 ! nucleus of superior olivary complex relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus [Term] id: UBERON:0023094 name: posterodorsal nucleus of medial geniculate body namespace: uberon synonym: "nucleus corporis geniculati medialis, pars posterodorsalis" RELATED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate body" EXACT [BIRNLEX:1622] synonym: "posterodorsal nucleus of medial geniculate complex" RELATED [BIRNLEX:1622] xref: BIRNLEX:1622 xref: HBA:4447 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=851 relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body [Term] id: UBERON:0023541 name: conical papilla namespace: uberon synonym: "conical papilla" EXACT [BIRNLEX:4103] synonym: "conical papilla" EXACT HUMAN_PREFERRED [BIRNLEX:4103] xref: BIRNLEX:4103 xref: http://linkedlifedata.com/resource/umls/id/C0226967 xref: http://linkedlifedata.com/resource/umls/id/C1289183 is_a: UBERON:0001726 {source="NIFSTD"} ! papilla of tongue [Term] id: UBERON:0028194 name: spiral prominence of cochlear duct namespace: uberon def: "a projecting portion of the spiral ligament of the cochlea, bounding the lower edge of the stria vascularis and containing within it a blood vessel, the vas prominens." [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] synonym: "prominentia spiralis ductus cochlearis" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct] synonym: "spiral prominence" BROAD [EMAPA:35799, MA:0003003] synonym: "spiral prominence of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:2532] synonym: "spiral prominence of cochlea" EXACT [BIRNLEX:2532] synonym: "spiral prominence of cochlear duct" EXACT [FMA:77833] xref: BIRNLEX:2532 xref: EMAPA:35799 xref: FMA:77833 xref: http://www.snomedbrowser.com/Codes/Details/279843007 xref: MA:0003003 relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] id: UBERON:0034670 name: palatal taste bud namespace: uberon def: "A taste bud that is located on the soft palate, in the roof of the mouth." [http://orcid.org/0000-0002-6601-2165, https://doi.org/10.1523/JNEUROSCI.5142-05.2006] synonym: "taste bud of palate" EXACT [] is_a: UBERON:0034722 ! mouth roof taste bud property_value: UBPROP:0000008 "In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006]" xsd:string [Term] id: UBERON:0034717 name: integumental taste bud namespace: uberon def: "A taste bud that is located external to the digestive tube, on the head or body, as found in species such as goldfish." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11921337] is_a: UBERON:0001727 ! taste bud [Term] id: UBERON:0034718 name: barbel taste bud namespace: uberon def: "A taste bud that is located on a barbel." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11921337] is_a: UBERON:0034717 ! integumental taste bud [Term] id: UBERON:0034719 name: lip taste bud namespace: uberon def: "A taste bud that is located on a lip." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11921337] is_a: UBERON:0034717 ! integumental taste bud property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034720 name: head taste bud namespace: uberon def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0034717 ! integumental taste bud [Term] id: UBERON:0034721 name: pharyngeal taste bud namespace: uberon def: "A taste bud that is located in the pharynx." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:7778 [Term] id: UBERON:0034722 name: mouth roof taste bud namespace: uberon def: "A taste bud that is located on the roof of the mouth." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:7778 [Term] id: UBERON:0034723 name: fin taste bud namespace: uberon def: "A taste bud that is located on a fin." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034724 name: esophageal taste bud namespace: uberon def: "A taste bud that is located in the esophagus." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0001727 ! taste bud property_value: RO:0002175 NCBITaxon:32443 [Term] id: UBERON:0034726 name: trunk taste bud namespace: uberon def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0034717 ! integumental taste bud [Term] id: UBERON:0034772 name: margin of eyelid namespace: uberon def: "the confluence of the mucosal surface of the conjunctiva, the edge of the orbicularis, and the cutaneous epithelium." [MGI:anna] synonym: "free margin of eyelid" EXACT [] xref: EMAPA:37905 {source="MA:th"} xref: FMA:59356 xref: http://www.snomedbrowser.com/Codes/Details/362527007 relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0034934 name: Weber's gland namespace: uberon def: "One of the lingual glands located on the lateral margins of the tongue, at the level of the foliate papillae and in the root of the tongue behind the circumvallate papillae." [MGI:anna, PMCID:PMC2667924] synonym: "gland of Weber" EXACT [] synonym: "posterior superficial lingual gland" EXACT [MGI:anna] is_a: UBERON:0003409 ! gland of tongue property_value: UBPROP:0000008 "in humans, the ducts of posterior superficial lingual glands open into the crypts of lingual tonsils; mucous supplied by these glands may help to cleanse the crypts and aid in deglutition" xsd:string [Term] id: UBERON:0034935 name: pars plicata of ciliary body namespace: uberon def: "Corrugated anterior region of ciliary body where ciliary processes arise" [http://orcid.org/0000-0002-6601-2165] synonym: "ciliary crown" EXACT [FMA:58431] synonym: "corona ciliaris" EXACT [FMA:58431] xref: FMA:58431 xref: http://www.snomedbrowser.com/Codes/Details/280859006 relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] id: UBERON:0034936 name: pars plana of ciliary body namespace: uberon def: "Flattened posterior region of ciliary body" [http://orcid.org/0000-0002-6601-2165] synonym: "ciliary ring" EXACT [FMA:58480] synonym: "orbiculus ciliaris" EXACT [FMA:58480] xref: FMA:58480 xref: http://www.snomedbrowser.com/Codes/Details/368830002 xref: NCIT:C33219 relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] id: UBERON:0035034 name: eyelid epithelium namespace: uberon def: "An epithelium that is part of an eyelid [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:32758 xref: MA:0003163 is_a: UBERON:0015808 ! eye epithelium relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0035036 name: naris epithelium namespace: uberon def: "An epithelium that is part of a naris [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:35959 xref: MA:0003172 relationship: part_of UBERON:0000003 ! naris [Term] id: UBERON:0035077 name: lateral nasal gland namespace: uberon def: "Any of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those described for the major serous salivary glands; secretory contents of the LNG drain into the nasal vestibule; the LNG is a major site for the synthesis and secretion of odorant-binding proteins that serve as odorant carriers in nasal mucus; it also, synthesizes large amounts of immunoglobulin A, which is important for immune defense of the upper respiratory tract, and testosterone and salivary androgen-binding proteins, which are likely important in olfaction and reproductive behavior" [MP:0013582] synonym: "glandula nasalis lateralis" EXACT LATIN [MP:0013582] synonym: "LNG" RELATED ABBREVIATION [MP:0013582] synonym: "Steno gland" EXACT [MP:0013582] synonym: "Steno's gland" EXACT [MP:0013582] xref: EMAPA:37894 {source="MA:th"} is_a: UBERON:0012278 ! gland of nasal mucosa [Term] id: UBERON:0035130 name: auditory ossicle endochondral element namespace: uberon synonym: "auditory skeletal element" EXACT [] synonym: "ear ossicle element" RELATED [] synonym: "ear ossicles element" RELATED PLURAL [] synonym: "middle ear ossicle element" EXACT [MP:0005105] synonym: "middle ear skeletal element" RELATED [] synonym: "ossicle element" BROAD [EMAPA:17824, http://en.wikipedia.org/wiki/Auditory_ossicle] synonym: "ossicle element of ear" RELATED [] synonym: "ossicle element of inner ear" RELATED [] synonym: "ossicular chain element" RELATED PLURAL [] relationship: part_of UBERON:0001756 {source="MA"} ! middle ear [Term] id: UBERON:0035131 name: auditory ossicle cartilage element namespace: uberon synonym: "ossicle cartilage condensation" EXACT [EMAPA:35979] xref: EMAPA:35979 is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0035132 name: auditory ossicle pre-cartilage element namespace: uberon synonym: "ossicle pre-cartilage condensation" EXACT [EMAPA:35982] xref: EMAPA:35982 is_a: UBERON:0035130 ! auditory ossicle endochondral element [Term] id: UBERON:0035174 name: right ear namespace: uberon def: "The organ of hearing located on the right side of the head." [ncithesaurus:Right_Ear] xref: FMA:53641 xref: http://linkedlifedata.com/resource/umls/id/C0229298 xref: http://www.snomedbrowser.com/Codes/Details/368570004 xref: NCIT:C81285 is_a: UBERON:0001690 ! ear [Term] id: UBERON:0035295 name: left ear namespace: uberon def: "The organ of hearing located on the left side of the head[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Left_Ear] xref: FMA:53642 xref: http://linkedlifedata.com/resource/umls/id/C0229299 xref: http://www.snomedbrowser.com/Codes/Details/368592000 xref: NCIT:C81259 is_a: UBERON:0001690 ! ear [Term] id: UBERON:0035555 name: lateral line sense organ namespace: uberon is_a: UBERON:0010521 ! electroreceptor organ relationship: part_of UBERON:0002540 ! lateral line system property_value: IAO:0000116 "ensure pit organ classifies here" xsd:string [Term] id: UBERON:0035570 name: tectothalamic tract namespace: uberon synonym: "fibre tettotalamiche@it" RELATED [NeuroNames:1424] synonym: "tectothalamic fibers" EXACT [NeuroNames:1424] synonym: "tectothalamic fibers" RELATED [NeuroNames:1424] synonym: "tectothalamic pathway" RELATED [NeuroNames:1424] synonym: "tectothalamic tract" RELATED [NeuroNames:1424] synonym: "ttp" RELATED ABBREVIATION [MBA:357] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1424 xref: MBA:357 relationship: part_of UBERON:0001908 ! optic tract [Term] id: UBERON:0035594 name: accessory optic system namespace: uberon def: "Subdivision of visual system that processes movements of images across retina and regulates the movement of eyes to keep the image stable." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893] relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0035595 name: accessory optic tract namespace: uberon synonym: "accessory optic fibers" RELATED [] synonym: "aot" RELATED ABBREVIATION [MBA:876] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1189 xref: MBA:876 relationship: part_of UBERON:0001908 ! optic tract relationship: part_of UBERON:0035594 ! accessory optic system [Term] id: UBERON:0035606 name: cartilage of external acoustic meatus namespace: uberon synonym: "cartilage of acoustic meatus" EXACT [FMA:61298] synonym: "cartilage of auditory canal" EXACT [FMA:61298] synonym: "cartilago meatus acustici" EXACT [FMA:TA] synonym: "external acoustic meatus cartilage" EXACT [FMA:61298] xref: FMA:61298 relationship: part_of UBERON:0001352 ! external acoustic meatus relationship: part_of UBERON:0001867 ! cartilage of external ear [Term] id: UBERON:0035806 name: Hensen stripe namespace: uberon def: "The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells." [MGI:anna] synonym: "Hensen's stripe" EXACT [MGI:anna] relationship: part_of UBERON:0001855 {source="cjm"} ! cochlear duct of membranous labyrinth property_value: UBPROP:0000010 "Hensen's stripe is continuous with a more external homogeneous basal layer, from which a marginal band of an amorphous substance originates; the marginal net extends from the marginal band and attaches the lateral border of the TM to Hensen's cells of the organ of Corti. Hensen's stripe and the homogeneous basal layers display interruptions through which the fibrillar structure of the TM is visible" xsd:string [Term] id: UBERON:0035930 name: retro-olivary nucleus namespace: uberon synonym: "nucleus retro-olivaris" EXACT LATIN [FMA:TA] synonym: "retro-olivary cell group" EXACT [FMA:72476] synonym: "RO" RELATED ABBREVIATION [DHBA:12467] xref: DHBA:12467 xref: FMA:72476 xref: HBA:9181 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=575 is_a: UBERON:0007247 {source="FMA"} ! nucleus of superior olivary complex [Term] id: UBERON:0035941 name: Kimura membrane namespace: uberon def: "The thickening of the lower surface of the tectorial membrane into which the hair bundles of the outer hair cells are embedded." [http://www.ncbi.nlm.nih.gov/pubmed/18797289, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2141, https://github.com/obophenotype/uberon/issues/1200, MGI:smith] relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea [Term] id: UBERON:0035964 name: promontory of tympanic cavity namespace: uberon def: "The promontory of the tympanic cavity, better known as the cochlear promontory is a rounded hollow prominence, formed by the projection outward of the first turn of the cochlea. It is placed between the fenestrae, and is furrowed on its surface by small grooves, for the lodgement of branches of the tympanic plexus. A minute spicule of bone frequently connects the promontory to the pyramidal eminence." [http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity] synonym: "promontorium" RELATED [http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity] synonym: "promontorium tympani" EXACT LATIN [FMA:TA] synonym: "promontory of the tympanic cavity" RELATED [http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity] synonym: "tympanic cavity promontory" EXACT [FMA:77694] xref: BTO:0003089 xref: FMA:77694 xref: http://en.wikipedia.org/wiki/Promontory_of_tympanic_cavity relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0035966 name: scleral lamina cribrosa namespace: uberon def: "The perforated part of the sclera through which pass the axons of the retinal ganglion cells." [BTO:0004277, Dorlands_Medical_Dictionary:MerckSource] synonym: "lamina cribrosa of sclera" EXACT [FMA:58371] synonym: "lamina cribrosa of sclera" RELATED [BTO:0004277] synonym: "lamina cribrosa sclerae" EXACT LATIN [FMA:TA] xref: BTO:0004277 xref: FMA:58371 xref: http://www.snomedbrowser.com/Codes/Details/281086001 relationship: part_of UBERON:0001773 {source="BTO"} ! sclera [Term] id: UBERON:0036167 name: Sattler's layer namespace: uberon def: "Sattler's layer is layer of medium diameter blood vessels of the choroid." [http://en.wikipedia.org/wiki/Sattler%27s_layer] comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. xref: Sattler%27s:layer relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] id: UBERON:0036168 name: Haller's layer namespace: uberon comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] id: UBERON:0036212 name: intertragic incisure namespace: uberon def: "A surface structure that is the narrowed downward continuation of the conchal space bounded anteriorly by the borders of the tragus, posteriorly by theantitragus, and along its lower lateral margins and inferior boundary by the connection between the first two." [http://en.wikipedia.org/wiki/Incisura_anterior_auris, http://www.ncbi.nlm.nih.gov/pubmed/20082456, https://github.com/obophenotype/human-phenotype-ontology/issues/2274, UBERON:cjm] comment: Measurement notes: The length is measured from the upper to the lower border (between tragus and antitragus) synonym: "anterior auricular groove" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] synonym: "auricular notch" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] synonym: "incisura" BROAD [https://github.com/obophenotype/human-phenotype-ontology/issues/2274] synonym: "incisura anterior auris" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] synonym: "incisura intertragica" EXACT LATIN [FMA:TA] synonym: "intertragal incisure" EXACT [FMA:61175] synonym: "intertragic incisure" EXACT [FMA:61175] synonym: "intertragic incisure" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] synonym: "intertragic notch" EXACT [FMA:61175] synonym: "sulcus auriculae anterior" RELATED [http://en.wikipedia.org/wiki/Incisura_anterior_auris] xref: FMA:61175 xref: http://en.wikipedia.org/wiki/Incisura_anterior_auris xref: http://www.snomedbrowser.com/Codes/Details/362542005 relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0036249 name: zona pectinata of basilar membrane of cochlea namespace: uberon def: "The acellular membrane that forms the outer two thirds of the basilar membrane of the conchlea." [http://medical-dictionary.thefreedictionary.com/zona+pectinata, https://github.com/obophenotype/uberon/issues/1357] synonym: "pectinate zone" BROAD [] synonym: "pectinate zone of basilar membrane" EXACT [] synonym: "pectinate zone of organ of corti" EXACT [] synonym: "zona pectinata" BROAD [] xref: BIRNLEX:2529 xref: FMA:75710 xref: http://linkedlifedata.com/resource/umls/id/C1184863 xref: http://www.snomedbrowser.com/Codes/Details/368962003 is_a: UBERON:0036250 ! zone of basilar membrane of cochlea [Term] id: UBERON:0036250 name: zone of basilar membrane of cochlea namespace: uberon synonym: "zone of organ of corti" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/361065006 relationship: part_of UBERON:0002226 ! basilar membrane of cochlea [Term] id: UBERON:0036254 name: piriform aperture namespace: uberon def: "A pear-shaped bony inlet comprising the most anterior and narrowest bony portion of the nasal airway." [http://en.wikipedia.org/wiki/Anterior_nasal_aperture, http://www.ncbi.nlm.nih.gov/pubmed/17082934, MGI:anna] synonym: "apertura piriformis" EXACT LATIN [FMA:TA] synonym: "apertura piriformis" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] synonym: "piriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] synonym: "pyriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] xref: FMA:53137 xref: http://en.wikipedia.org/wiki/Anterior_nasal_aperture relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:0036255 name: interoceptive system namespace: uberon def: "The system that is responsible for sensing the internal state of the body." [http://en.wikipedia.org/wiki/Interoception, https://github.com/obophenotype/uberon/issues/1385] xref: http://en.wikipedia.org/wiki/Interoception is_a: UBERON:0001032 ! sensory system [Term] id: UBERON:0036265 name: conjunctival papilla namespace: uberon synonym: "conjunctival papillae" EXACT PLURAL [] xref: http://www.snomedbrowser.com/Codes/Details/280681004 relationship: part_of UBERON:0001811 ! conjunctiva [Term] id: UBERON:0036300 name: tributary of central retinal vein namespace: uberon synonym: "central retinal venous tributary" EXACT [FMA:51892] xref: FMA:51892 xref: http://www.snomedbrowser.com/Codes/Details/731368004 relationship: part_of UBERON:0001673 ! central retinal vein [Term] id: UBERON:0036925 name: wall of eyeball namespace: uberon synonym: "eyeball wall" EXACT [FMA:58098] xref: FMA:58098 relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye [Term] id: UBERON:0036990 name: wall of pharyngotympanic tube namespace: uberon synonym: "pharyngotympanic tube wall" EXACT [FMA:60069] xref: FMA:60069 relationship: part_of UBERON:0002393 {source="FMA"} ! pharyngotympanic tube [Term] id: UBERON:0037191 name: wall of membranous labyrinth namespace: uberon synonym: "membranous labyrinth wall" EXACT [FMA:79837] xref: FMA:79837 relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth [Term] id: UBERON:0037237 name: wall of lacrimal duct namespace: uberon synonym: "lacrimal ductal wall" EXACT [FMA:85375] xref: FMA:85375 relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system [Term] id: UBERON:1000004 name: collection of hair on external ear namespace: uberon def: "A collection of hairs that grows on the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn synonym: "external ear hair" RELATED [] relationship: part_of UBERON:0001691 ! external ear property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger [Term] id: UBERON:1000005 name: external ear margin namespace: uberon def: "Anatomical junction consisting of the area along the edge of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn relationship: part_of UBERON:0001691 ! external ear property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger [Term] id: UBERON:1000012 name: nose anterior margin namespace: uberon def: "Subdivision of the head consisting of the area along the front edge of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn relationship: part_of UBERON:0007827 ! external nose property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger [Term] id: UBERON:1000013 name: nose vertex namespace: uberon def: "The extreme point of curvature of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn relationship: part_of UBERON:0007827 ! external nose property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger [Term] id: UBERON:1000017 name: tip of external ear namespace: uberon def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn relationship: part_of UBERON:0001691 ! external ear property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger [Term] id: UBERON:1000022 name: Zymbal's gland namespace: uberon def: "A multilobulated modified sebaceous gland that is located at the base of the external ear, lined by stratified squamous epithelium, and secretes into the auditory canal" [http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html, ISBN:0123813611, MP:0013384] synonym: "auditory sebaceous gland" RELATED [ISBN:0123813611] synonym: "gland of Zymbal" RELATED [] synonym: "Zymbal gland" RELATED [MA:0002900] xref: EMAPA:37808 {source="MA:th"} xref: http://linkedlifedata.com/resource/umls/id/C0687056 xref: http://www.snomedbrowser.com/Codes/Details/105587007 xref: MA:0002900 xref: NCIT:C77954 xref: UMLS:C0687056 {source="ncithesaurus:Zymbal_Gland"} relationship: part_of UBERON:0001691 {source="cjm"} ! external ear property_value: UBPROP:0000010 "Zymbal's glands are located beneath squamous epithelium at the anterior and posterior aspect of the ear canal, and as a single external gland that is located anterior and ventral to the base of the external ear canal. The bilateral Zymbal's glands are adjacent to the auditory canal and are made up of several lobules of modified sebaceous glands - http://ratguide.com/health/neoplasia/zymbals_gland_tumor.php." xsd:string property_value: UBPROP:0000015 "located anterior and ventral to the exterior ear canal in rodents[MP:0013384]" xsd:string [Term] id: UBERON:1500003 name: lateral line canal lumen namespace: none def: "Anatomical space that contains a portion of the lateral line system." [] {comment="PHENOSCAPE:MAH"} comment: TO DO: think about definitions for spaces in bone, in which pass through nerves, muscles, tendons and are defined by them. relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:2000116 name: macula lagena namespace: uberon/phenoscape-anatomy xref: ZFA:0000116 is_a: UBERON:0000054 ! macula relationship: part_of UBERON:0002518 ! otolith organ property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000120 name: lateral line ganglion namespace: uberon def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFA:0000120, ZFA:curator] subset: efo_slim synonym: "lateral line ganglia" EXACT PLURAL [TAO:0000120] synonym: "LLG" EXACT ABBREVIATION [TAO:0000120] xref: EFO:0003493 xref: TAO:0000120 xref: XAO:0004457 xref: ZFA:0000120 relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:2000125 name: mandibular lateral line neuromast namespace: uberon/phenoscape-anatomy def: "Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast mandibular" EXACT [TAO:0000125] synonym: "neuromasts mandibular" EXACT PLURAL [TAO:0000125] xref: ZFA:0000125 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000259 ! mandibular lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000136 name: otic lateral line neuromast namespace: uberon/phenoscape-anatomy def: "Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast otic" EXACT [TAO:0000136] synonym: "neuromasts otic" EXACT PLURAL [TAO:0000136] xref: ZFA:0000136 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000464 ! otic lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000168 name: anterior macula namespace: uberon/phenoscape-anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "am" EXACT [TAO:0000168] xref: ZFA:0000168 is_a: UBERON:0000054 ! macula relationship: part_of UBERON:0002518 ! otolith organ property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000175 name: posterior lateral line nerve namespace: uberon/phenoscape-anatomy def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:curator] synonym: "caudal lateral line nerve" EXACT [TAO:0000175] xref: ZFA:0000175 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2001471 ! posterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000225 name: lateral crista primordium namespace: uberon/phenoscape-anatomy synonym: "lateral crista primordia" EXACT PLURAL [TAO:0000225] xref: ZFA:0000225 is_a: UBERON:0003240 ! epithelium of lateral semicircular canal is_a: UBERON:0003249 ! epithelium of otic placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000228 name: lateral line primordium namespace: uberon/phenoscape-anatomy synonym: "lateral line primordia" EXACT PLURAL [TAO:0000228] synonym: "llp" EXACT [TAO:0000228] xref: ZFA:0000228 relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000232 name: lateral semicircular canal primordium namespace: uberon/phenoscape-anatomy synonym: "lateral semicircular canal primordia" EXACT PLURAL [TAO:0000232] xref: ZFA:0000232 relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000234 name: macula neglecta namespace: uberon/phenoscape-anatomy def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234] xref: ZFA:0000234 is_a: UBERON:0000054 ! macula relationship: part_of UBERON:0002518 ! otolith organ created_by: teleost_anatomy_curators [Term] id: UBERON:2000259 name: mandibular lateral line namespace: uberon/phenoscape-anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFA:0000259 is_a: UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000315 name: asteriscus namespace: uberon/phenoscape-anatomy synonym: "lagenar otolith" EXACT [TAO:0000315] synonym: "lagenolith" EXACT [TAO:0000315] xref: ZFA:0000315 is_a: UBERON:0002280 ! otolith property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000411 name: posterior crista primordium namespace: uberon/phenoscape-anatomy synonym: "posterior crista primordia" EXACT PLURAL [TAO:0000411] xref: ZFA:0000411 is_a: UBERON:0003239 ! epithelium of posterior semicircular canal is_a: UBERON:0003249 ! epithelium of otic placode property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000412 name: posterior semicircular canal primordium namespace: uberon/phenoscape-anatomy synonym: "posterior semicircular canal primordia" EXACT PLURAL [TAO:0000412] xref: ZFA:0000412 relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000424 name: opercular lateral line namespace: uberon/phenoscape-anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFA:0000424 is_a: UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000425 name: anterior lateral line nerve namespace: uberon/phenoscape-anatomy def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [ZFIN:curator] synonym: "rostral lateral line nerve" EXACT [TAO:0000425] xref: ZFA:0000425 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2001468 ! anterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000464 name: otic lateral line namespace: uberon/phenoscape-anatomy def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] xref: ZFA:0000464 is_a: UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000469 name: anterior semicircular canal primordium namespace: uberon/phenoscape-anatomy synonym: "anterior semicircular canal primordia" EXACT PLURAL [TAO:0000469] xref: ZFA:0000469 relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000530 name: lapillus namespace: uberon/phenoscape-anatomy synonym: "utricular otolith" EXACT [TAO:0000530] synonym: "utriculith" EXACT [TAO:0000530] xref: ZFA:0000530 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000558 name: posterior macula namespace: uberon/phenoscape-anatomy def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "pm" EXACT [TAO:0000558] synonym: "posteromedial macula" EXACT [TAO:0000558] xref: ZFA:0000558 is_a: UBERON:0000054 ! macula property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000676 name: sagitta namespace: uberon/phenoscape-anatomy synonym: "saccular otolith" EXACT [TAO:0000676] synonym: "sacculith" EXACT [TAO:0000676] xref: ZFA:0000676 is_a: UBERON:0002280 ! otolith relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000813 name: infraorbital lateral line neuromast namespace: uberon/phenoscape-anatomy def: "Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast infraorbital" EXACT [TAO:0000813] synonym: "neuromasts infraorbital" EXACT PLURAL [TAO:0000813] xref: ZFA:0000813 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003094 ! infraorbital lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000814 name: opercular lateral line neuromast namespace: uberon/phenoscape-anatomy def: "Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast opercular" EXACT [TAO:0000814] synonym: "neuromasts opercular" EXACT PLURAL [TAO:0000814] xref: ZFA:0000814 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000424 ! opercular lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2000939 name: middle lateral line neuromast namespace: uberon def: "Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] subset: efo_slim synonym: "neuromast middle" EXACT [TAO:0000939] synonym: "neuromasts middle" EXACT PLURAL [TAO:0000939] xref: EFO:0003592 xref: TAO:0000939 xref: ZFA:0000939 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003096 ! middle lateral line [Term] id: UBERON:2000940 name: posterior lateral line neuromast namespace: uberon/phenoscape-anatomy def: "Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast posterior" EXACT [TAO:0000940] synonym: "neuromasts posterior" EXACT PLURAL [TAO:0000940] xref: ZFA:0000940 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0006334 ! posterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001025 name: occipital lateral line neuromast namespace: uberon def: "A neuromast that is part of the occipital lateral line." [ZFIN:curator] subset: efo_slim synonym: "neuromast occipital" EXACT [TAO:0001025] synonym: "neuromasts occipital" EXACT PLURAL [TAO:0001025] xref: EFO:0003606 xref: TAO:0001025 xref: ZFA:0001025 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003093 ! occipital lateral line [Term] id: UBERON:2001026 name: supraorbital lateral line neuromast namespace: uberon def: "A neuromast that is part of the supraorbital lateral line." [ZFIN:curator] subset: efo_slim synonym: "neuromast supraorbital" EXACT [TAO:0001026] synonym: "neuromasts supraorbital" EXACT PLURAL [TAO:0001026] xref: EFO:0003607 xref: TAO:0001026 xref: ZFA:0001026 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003090 ! supraorbital lateral line [Term] id: UBERON:2001156 name: posterior lateral line placode namespace: uberon namespace: uberon/phenoscape-anatomy xref: ZFA:0001156 relationship: part_of UBERON:2001471 ! posterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001157 name: posterior lateral line primordium namespace: uberon/phenoscape-anatomy def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001." [ZFIN:curator] synonym: "posterior lateral line primordia" EXACT PLURAL [TAO:0001157] xref: ZFA:0001157 is_a: UBERON:2000228 ! lateral line primordium relationship: part_of UBERON:2001471 ! posterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001312 name: dorsal anterior lateral line ganglion namespace: uberon subset: efo_slim synonym: "anterodorsal lateral line ganglion" EXACT [TAO:0001312] xref: EFO:0003674 xref: TAO:0001312 xref: ZFA:0001312 is_a: UBERON:2001391 ! anterior lateral line ganglion [Term] id: UBERON:2001313 name: ventral anterior lateral line ganglion namespace: uberon/phenoscape-anatomy synonym: "anteroventral lateral line ganglion" EXACT [TAO:0001313] xref: ZFA:0001313 is_a: UBERON:2001391 ! anterior lateral line ganglion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001314 name: posterior lateral line ganglion namespace: uberon namespace: uberon/phenoscape-anatomy def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator] xref: ZFA:0001314 is_a: UBERON:2000120 ! lateral line ganglion property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001316 name: anterior lateral line placode namespace: uberon def: "Dorsolateral placode that gives rise to the anterior lateral line." [ZFA:0001316, ZFA:curator] subset: efo_slim synonym: "anterior lateral line placodes" RELATED PLURAL [ZFA:0001316] synonym: "pre-auditory lateral line placode" RELATED [XAO:0004221] xref: EFO:0003461 xref: TAO:0001316 xref: XAO:0004221 xref: ZFA:0001316 relationship: part_of UBERON:2001468 ! anterior lateral line system property_value: UBPROP:0000001 "Lateral line placode that gives rise to the anterior lateral line nerve[XAO:0004221, XAO:EJS]." xsd:string {source="XAO:EJS"} [Term] id: UBERON:2001391 name: anterior lateral line ganglion namespace: none namespace: uberon def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] subset: efo_slim synonym: "anterior lateral line ganglia" RELATED PLURAL [TAO:0001391] xref: EFO:0003683 xref: TAO:0001391 xref: ZFA:0001391 is_a: UBERON:2000120 ! lateral line ganglion relationship: part_of UBERON:2001468 ! anterior lateral line system [Term] id: UBERON:2001426 name: posterior naris namespace: uberon/phenoscape-anatomy synonym: "posterior nostril" EXACT [TAO:0001426] xref: ZFA:0001426 is_a: UBERON:0005928 ! external naris property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001427 name: anterior naris namespace: uberon/phenoscape-anatomy synonym: "anterior nostril" EXACT [TAO:0001427] xref: ZFA:0001427 is_a: UBERON:0005928 ! external naris property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001428 name: olfactory rosette namespace: uberon/phenoscape-anatomy synonym: "nasal rosette" EXACT [TAO:0001428] xref: ZFA:0001428 is_a: UBERON:0019306 ! nose epithelium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001432 name: anterior sclerotic bone namespace: uberon/phenoscape-anatomy def: "Sclerotic bone that is located anterior to the eye." [TAO:wd] xref: ZFA:0001432 is_a: UBERON:0010297 ! endochondral scleral ossicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001433 name: posterior sclerotic bone namespace: uberon/phenoscape-anatomy def: "Sclerotic bone that is located posterior to the eye." [TAO:wd] xref: ZFA:0001433 is_a: UBERON:0010297 ! endochondral scleral ossicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001468 name: anterior lateral line system namespace: uberon def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] subset: efo_slim xref: EFO:0003691 xref: TAO:0001468 xref: ZFA:0001468 is_a: UBERON:0002540 ! lateral line system [Term] id: UBERON:2001470 name: anterior lateral line namespace: uberon def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [ZFIN:curator] xref: TAO:0001470 xref: ZFA:0001470 is_a: UBERON:0010202 ! lateral line relationship: part_of UBERON:2001468 ! anterior lateral line system [Term] id: UBERON:2001471 name: posterior lateral line system namespace: uberon/phenoscape-anatomy def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] xref: ZFA:0001471 is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001472 name: anterior lateral line neuromast namespace: uberon/phenoscape-anatomy def: "Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast anterior" EXACT [TAO:0001472] xref: ZFA:0001472 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2001470 ! anterior lateral line property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001480 name: dorsal anterior lateral line nerve namespace: uberon/phenoscape-anatomy def: "Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts." [ZFIN:curator] xref: ZFA:0001480 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000425 ! anterior lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001481 name: ventral anterior lateral line nerve namespace: uberon/phenoscape-anatomy def: "Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts." [ZFIN:curator] xref: ZFA:0001481 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000425 ! anterior lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001482 name: middle lateral line nerve namespace: uberon/phenoscape-anatomy def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [ZFIN:curator] xref: ZFA:0001482 is_a: UBERON:0008906 ! lateral line nerve relationship: part_of UBERON:2000175 ! posterior lateral line nerve relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001483 name: middle lateral line ganglion namespace: uberon/phenoscape-anatomy def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [ZFIN:curator] xref: ZFA:0001483 is_a: UBERON:2000120 ! lateral line ganglion relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001612 name: sensory canal namespace: uberon/phenoscape-anatomy def: "Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromast organs." [TAO:wd] comment: Sensory canals usually communicate with the environment via pores in the sensory canal or at the distal ends of tubules, which extend from canal where pores would otherwise be. synonym: "lateral line canal" EXACT [TAO:0001612] synonym: "lateral-line canal" EXACT [TAO:0001612] xref: ZFA:0005443 relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001617 name: trunk sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to or onto the caudal fin. The trunk sensory canal is bilaterally paired." [TAO:wd] comment: Pores frequently piercing scales if present; occasionally enclosed in bony ossicles. synonym: "trunk lateral line canal" EXACT [TAO:0001617] xref: ZFA:0005444 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001872 ! trunk sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001619 name: post-otic sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. synonym: "post-temporal canal" EXACT [TAO:0001619] xref: ZFA:0005394 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001629 name: otic sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. xref: ZFA:0005393 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001630 name: supratemporal sensory canal namespace: uberon/phenoscape-anatomy alt_id: UBERON:2001618 def: "Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired." [TAO:wd] synonym: "occipital canal" EXACT [TAO:0001630] synonym: "occipital sensory canal" EXACT [TAO:0001630] synonym: "supratemporal canal" EXACT [TAO:0001630] xref: ZFA:0005445 is_a: UBERON:2001612 ! sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001810 name: supraorbital sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with otic and infraorbital sensory canals. synonym: "supraorbital canal" EXACT [TAO:0001810] xref: ZFA:0005396 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001811 name: infraorbital sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal lateral or ventral to and in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired and associated with the infraorbital bones." [TAO:wd] comment: May be continuous with otic and supraorbital sensory canals at their union. synonym: "infraorbital canal" EXACT [TAO:0001811] xref: ZFA:0005392 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001812 name: preoperculo-mandibular sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones." [TAO:wd] comment: May be continuous with the otic and post-otic sensory canals at their union. synonym: "preoperculo-mandibular canal" EXACT [TAO:0001812] xref: ZFA:0005395 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001813 name: preopercular sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal lateral or ventral to and in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired and associated with the preopercle bone." [TAO:wd] comment: May be continuous with the otic and post-otic sensory canals at their union. xref: ZFA:0005448 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001814 name: mandibular sensory canal namespace: uberon/phenoscape-anatomy def: "Sensory canal anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and associated with the angular and dentary bones." [TAO:wd] comment: May be continuous with the preoperculo-mandibular sensory canal. synonym: "mandibular canal" RELATED [TAO:0001814] xref: ZFA:0005451 is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001824 name: lateral line scale namespace: uberon/phenoscape-anatomy def: "Scale that is associated with the lateral line sensory canal." [TAO:wd] xref: ZFA:0005530 relationship: part_of UBERON:2002099 ! lateral line scale series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001872 name: trunk sensory canal system namespace: uberon/phenoscape-anatomy def: "Lateral line system on trunk." [TAO:wd] is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001873 name: head sensory canal system namespace: uberon/phenoscape-anatomy def: "Lateral line system on head and pectoral girdle." [TAO:wd] synonym: "cephalic sensory canal system" EXACT [TAO:0001873] xref: ZFA:0005391 is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2001933 name: sensory canal tubule namespace: uberon/phenoscape-anatomy def: "Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so." [TAO:wd] xref: ZFA:0005447 is_a: UBERON:2001612 ! sensory canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2002099 name: lateral line scale series namespace: uberon/phenoscape-anatomy def: "Anatomical cluster that consists of more than one lateral line scale." [TAO:wd] is_a: BFO:0000040 ! material entity is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2002193 name: dorsolateral septum namespace: uberon/phenoscape-anatomy def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [ZFIN:ZDB-PUB-961014-383] synonym: "dorsal bar" RELATED [TAO:0002193] xref: ZFA:0001672 relationship: part_of UBERON:0001841 ! anterior semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2002206 name: macula communis namespace: uberon/phenoscape-anatomy xref: ZFA:0001671 is_a: UBERON:0006937 ! inner ear epithelium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2002223 name: pillar of the semicircular canal namespace: uberon/phenoscape-anatomy xref: ZFA:0001717 relationship: part_of UBERON:0001840 ! semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2002248 name: supratemporal commissure namespace: uberon/phenoscape-anatomy def: "Lateral line canal that that crosses the supratemporal region posterior to the openings of the endolymphatic ducts and connects the lateral canals of each side." [DOI: 10.1002/cne.900280102] comment: Not clear what the taxon constraints are here. The cited reference discusses two species of dogfish. is_a: UBERON:1500003 ! lateral line canal lumen created_by: teleost_anatomy_curators [Term] id: UBERON:2002275 name: Jakubowski's organ namespace: uberon/phenoscape-anatomy def: "Neuromast of the supraorbital sensory canal in the nasal bone. It is innervated by the buccal nerve rather than by the supraorbital nerve, which invariably innervates neuromasts of the supraorbital canal. (Johnson and Patterson 1993)." [TAO:wd] is_a: UBERON:0008904 ! neuromast property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005054 name: inner optic circle namespace: uberon/phenoscape-anatomy synonym: "IOC" EXACT [TAO:0005054] xref: ZFA:0005054 is_a: UBERON:0002203 ! vasculature of eye property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005113 name: dorsal lateral line neuromast namespace: uberon def: "Neuromast that is part of the dorsal lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast dorsal" EXACT [TAO:0005113] xref: TAO:0005113 xref: ZFA:0005113 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003095 ! dorsal lateral line [Term] id: UBERON:2005114 name: middle lateral line system namespace: uberon/phenoscape-anatomy xref: ZFA:0005114 is_a: UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005115 name: primary posterior lateral line primordium namespace: uberon/phenoscape-anatomy def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [ZFIN:curator] synonym: "primary posterior lateral line primordia" EXACT PLURAL [TAO:0005115] synonym: "primI" EXACT [TAO:0005115] xref: ZFA:0005115 is_a: UBERON:2001157 ! posterior lateral line primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005116 name: secondary posterior lateral line primordium namespace: uberon/phenoscape-anatomy def: "Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction." [ZFIN:curator] synonym: "secondary posterior lateral line primordia" EXACT PLURAL [TAO:0005116] xref: ZFA:0005116 is_a: UBERON:2001157 ! posterior lateral line primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005117 name: anterior lateral line primordium namespace: uberon/phenoscape-anatomy def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [ZFIN:curator] synonym: "anterior lateral line primordia" EXACT PLURAL [TAO:0005117] xref: ZFA:0005117 is_a: UBERON:2000228 ! lateral line primordium relationship: part_of UBERON:2001468 ! anterior lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005118 name: middle lateral line primordium namespace: uberon/phenoscape-anatomy def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [ZFIN:curator] synonym: "middle lateral line primordia" EXACT PLURAL [TAO:0005118] xref: ZFA:0005118 is_a: UBERON:2000228 ! lateral line primordium relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005121 name: middle lateral line placode namespace: uberon/phenoscape-anatomy xref: ZFA:0005121 relationship: part_of UBERON:2005114 ! middle lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005144 name: ampullary nerve namespace: uberon/phenoscape-anatomy def: "A branch of the 8th cranial nerve that innervates the cristae ampullaris." [ZFIN:curator] xref: ZFA:0005144 relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005227 name: protoneuromast namespace: uberon/phenoscape-anatomy synonym: "immature neuromast" RELATED [TAO:0005227] synonym: "proto neuromast" RELATED [TAO:0005227] synonym: "proto-neuromast" RELATED [TAO:0005227] xref: ZFA:0005227 relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005409 name: pars superior ear namespace: uberon/phenoscape-anatomy def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] xref: ZFA:0005409 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005410 name: pars inferior ear namespace: uberon/phenoscape-anatomy def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator] xref: ZFA:0005410 is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005411 name: common crus namespace: uberon/phenoscape-anatomy xref: ZFA:0005411 relationship: part_of UBERON:2005409 ! pars superior ear property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005412 name: transverse canal namespace: uberon/phenoscape-anatomy def: "Duct that crosses the midline connecting the sacculi." [ZFIN:curator] xref: ZFA:0005412 relationship: part_of UBERON:0002105 ! vestibulo-auditory system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005415 name: inner ear foramen namespace: uberon/phenoscape-anatomy def: "Foramen in the inner ear." [ZFIN:curator] xref: ZFA:0005415 relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2005416 name: sacculoagenar foramen namespace: uberon/phenoscape-anatomy xref: ZFA:0005416 is_a: UBERON:2005415 ! inner ear foramen property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2007054 name: pillar of the anterior semicircular canal namespace: uberon/phenoscape-anatomy synonym: "anterior hub of the semicircular canal" EXACT [TAO:0007054] synonym: "anterior pillar" EXACT [TAO:0007054] synonym: "anterior pillar of the semicircular canal" EXACT [TAO:0007054] synonym: "horizontal hub" RELATED [TAO:0007054] xref: ZFA:0007054 is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: part_of UBERON:0001841 ! anterior semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:2007055 name: pillar of the lateral semicircular canal namespace: uberon/phenoscape-anatomy synonym: "lateral hub of the semicircular canal" EXACT [TAO:0007055] synonym: "ventral bar" EXACT [TAO:0007055] synonym: "ventral pillar" EXACT [TAO:0007055] synonym: "ventral piller of the semicircular canal" EXACT [TAO:0007055] xref: ZFA:0007055 is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: part_of UBERON:0001843 ! lateral semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: teleost_anatomy_curators [Term] id: UBERON:3000002 name: alary cartilage namespace: uberon/phenoscape-anatomy def: "Paired, cup-shaped cartilage that are dorsal to the septomaxillae and anterior to the oblique cartilage. The anterior, convex face of each alary cartilage is synchondrotically fused to the superior prenasal cartilage and the ventral edge is fused to the superior margin of the crista intermedia." [AAO:LAP] synonym: "alinasal cartilage" RELATED [UBERON:3000002] synonym: "cartilago alaris" RELATED [UBERON:3000002] synonym: "cartilago alaris nasi" RELATED [UBERON:3000002] synonym: "cartilago cupullaris" RELATED [UBERON:3000002] synonym: "copula anterior" RELATED [UBERON:3000002] synonym: "naseflngelknorpel" RELATED [UBERON:3000002] synonym: "processus alaris" RELATED [UBERON:3000002] synonym: "second upper labial" RELATED [UBERON:3000002] is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000015 name: anterior maxillary process namespace: uberon/phenoscape-anatomy def: "Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla." [AAO:LAP] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000016 name: anterior nasal wall namespace: uberon/phenoscape-anatomy def: "Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule." [AAO:LAP] synonym: "prenasal wall" RELATED [UBERON:3000016] synonym: "solum anterius" RELATED [UBERON:3000016] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000057 name: canalis semicircularis anterior namespace: uberon/phenoscape-anatomy is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000059 name: capsular process namespace: uberon/phenoscape-anatomy def: "Narrow process of the skeletal support that projects forward." [AAO:LAP] relationship: part_of UBERON:3000565 ! skeletal support for eminentia olfactoria property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000068 name: cartilago ectochoanalis namespace: uberon/phenoscape-anatomy def: "Lateral cartilaginous border of the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000069 name: cartilago infranarina namespace: uberon/phenoscape-anatomy is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000079 name: cartilago retronarina namespace: uberon/phenoscape-anatomy is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000085 name: cavum inferius namespace: uberon/phenoscape-anatomy def: "Accessory cavity located ventral to the cavum principale and cavum medius." [AAO:LAP] is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000086 name: cavum internasale namespace: uberon/phenoscape-anatomy is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000087 name: cavum medius namespace: uberon/phenoscape-anatomy def: "Small accessory cavity located between the cavum principale and cavum inferius." [AAO:LAP] is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000088 name: cavum praenasale namespace: uberon/phenoscape-anatomy is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000089 name: cavum principale namespace: uberon/phenoscape-anatomy def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:LAP] {comment="AAO:EJS"} is_a: UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000110 name: crista contacta namespace: uberon/phenoscape-anatomy def: "Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior." [AAO:LAP] relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000113 name: crista intermedia namespace: uberon/phenoscape-anatomy def: "Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior." [AAO:LAP] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000117 name: crista subnasalis namespace: uberon/phenoscape-anatomy def: "Ventral crest of the paries nasi." [AAO:LAP] synonym: "subnasal crest" RELATED [UBERON:3000117] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000118 name: crista supraorbitalis namespace: uberon/phenoscape-anatomy def: "Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen." [AAO:LAP] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000141 name: endolymphatic system namespace: uberon/phenoscape-anatomy is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000155 name: extremitas anterior namespace: uberon/phenoscape-anatomy def: "Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior." [AAO:LAP] synonym: "anterior ramus" RELATED [UBERON:3000155] relationship: part_of UBERON:0011167 ! septomaxilla bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000160 name: fenestra dorsalis nasi namespace: uberon/phenoscape-anatomy is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000161 name: fenestra endochoanalis namespace: uberon/phenoscape-anatomy def: "Opening on the ventral aspect of the nasal capsule. It contains the apertura nasalis interna." [AAO:LAP] synonym: "fenestra exochoanalis" RELATED [UBERON:3000161] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000162 name: fenestra endonarina communis namespace: uberon/phenoscape-anatomy def: "Opening on the anterolateral aspect of the nasal capsule. It contains the apertura nasalis externa." [AAO:LAP] synonym: "apertura nasalis externa" RELATED [UBERON:3000162] synonym: "fenestra narina" RELATED [UBERON:3000162] synonym: "narial fenestra" RELATED [UBERON:3000162] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000164 name: fenestra lateralis nasi namespace: uberon/phenoscape-anatomy def: "Opening on the lateral side of the nasal capsule." [AAO:LAP] synonym: "fenestra infraconchalis" RELATED [UBERON:3000164] synonym: "fenestra retronarina" RELATED [UBERON:3000164] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000166 name: fenestra nasobasalis namespace: uberon/phenoscape-anatomy def: "Small opening at the anterior tip of the nasal capsule, on the floor of the cavum inferius. It is located medially to the base of the inferior prenasal cartilage and serves for the passage of the ramus medialis narium and arteria orbitonasalis." [AAO:LAP] synonym: "basal fenestra" RELATED [UBERON:3000166] synonym: "fenestra basalis nasi" RELATED [UBERON:3000166] synonym: "foramen apicale" RELATED [UBERON:3000166] synonym: "foramen epiphaniale" RELATED [UBERON:3000166] synonym: "nasobasal fenestra" RELATED [UBERON:3000166] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000167 name: fenestra nasolateralis namespace: uberon/phenoscape-anatomy def: "Elongated opening located on the lateral side of the nasal capsule." [AAO:LAP] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000170 name: fenestra precerebralis namespace: uberon/phenoscape-anatomy is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000171 name: fenestra prechoanalis namespace: uberon/phenoscape-anatomy def: "Large opening of the nasal floor anterior to the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000178 name: footplate of pars media plectri namespace: uberon/phenoscape-anatomy def: "Independent, horizontal bar of cartilage located on the anterior part of the fenestra ovalis in front of the pars interna plectri." [AAO:LAP] synonym: "fenestral plate" RELATED [UBERON:3000178] synonym: "interstapediale" RELATED [UBERON:3000178] synonym: "otostapes" RELATED [UBERON:3000178] synonym: "pars otica columellae" RELATED [UBERON:3000178] synonym: "pseudooperculum" RELATED [UBERON:3000178] relationship: part_of UBERON:3000408 ! pars media plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000189 name: foramen orbitonasale laterale namespace: uberon/phenoscape-anatomy is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000190 name: foramen orbitonasale mediale namespace: uberon/phenoscape-anatomy synonym: "canalis orbitonasalis" RELATED [UBERON:3000190] synonym: "canalis orbitonasalis medialis" RELATED [UBERON:3000190] synonym: "foramen orbitonasale" RELATED [UBERON:3000190] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000234 name: inferior prenasal cartilage namespace: uberon/phenoscape-anatomy def: "Elongate cartilage that extends anteroventrally from the solum nasi to abut the ventral portion of the posterior aspect of the alary process of the premaxilla. It was first described by Wiedersheim in 1876." [AAO:LAP] synonym: "inferior prenasal process" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior lateralis" RELATED [UBERON:3000234] is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000259 name: lamina inferior namespace: uberon/phenoscape-anatomy def: "Lateral expansion of the crista intermedia that serves as the floor of the cavum medium." [AAO:LAP] synonym: "lamina inferior cristae intermediae" RELATED [UBERON:3000259] relationship: part_of UBERON:0006332 ! nasal capsule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000260 name: lamina nariochoanalis namespace: uberon/phenoscape-anatomy def: "Free, dorsal margin of the lamina inferior." [AAO:LAP] relationship: part_of UBERON:0006332 ! nasal capsule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000263 name: lamina precerebralis namespace: uberon/phenoscape-anatomy def: "Posterior face of septum nasi." [AAO:LAP] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000264 name: lamina superior namespace: uberon/phenoscape-anatomy def: "Lateral expansion of the crista intermedia that serves as the roof of the cavum medium." [AAO:LAP] synonym: "lamina superior cristae intermediae" RELATED [UBERON:3000264] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000290 name: medial inferior prenasal cartilage namespace: uberon/phenoscape-anatomy is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000291 name: medial orbitonasal foramen namespace: uberon/phenoscape-anatomy def: "Opening on the postnasal wall for the medial branch (= ramus medialis nasi) of the ophthalmicus nerve." [AAO:LAP] is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000294 name: median prenasal process namespace: uberon/phenoscape-anatomy def: "Anterior projection of the septum nasi that protrudes through the anterior nasal wall." [AAO:LAP] synonym: "processus prenasalis medius" RELATED [UBERON:3000294] relationship: part_of UBERON:0001706 ! nasal septum property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000316 name: nasal opening namespace: uberon/phenoscape-anatomy is_a: UBERON:0006332 ! nasal capsule property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000329 name: oblique cartilage namespace: uberon/phenoscape-anatomy def: "Semi-circular cartilaginous sheet that lies lateral to the side of the septum nasi." [AAO:LAP] synonym: "cartilago obliqua" RELATED [UBERON:3000329] synonym: "cartilago obliqua nasi" RELATED [UBERON:3000329] synonym: "cartilago obliquo" RELATED [UBERON:3000329] synonym: "dorsal process" RELATED [UBERON:3000329] synonym: "lamina obliqua" RELATED [UBERON:3000329] is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000333 name: olfactory foramen namespace: uberon/phenoscape-anatomy is_a: UBERON:3000316 ! nasal opening property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000381 name: paranasal commissure namespace: uberon/phenoscape-anatomy def: "Cartilaginous bridge that extends posteriorly to the anterolateral corner of the posterior nasal wall." [AAO:LAP] synonym: "commissura lateralis nasi" RELATED [UBERON:3000381] synonym: "connection between lamina nariochoanalis and postnasal wall" RELATED [UBERON:3000381] synonym: "processus lingularis" RELATED [UBERON:3000381] is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000389 name: paries nasi namespace: uberon/phenoscape-anatomy def: "Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000393 name: pars amphibiorum namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000395 name: pars basilaris namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000399 name: pars externa plectri namespace: uberon/phenoscape-anatomy synonym: "extracolumellare" RELATED [UBERON:3000399] synonym: "extrapediale" RELATED [UBERON:3000399] synonym: "extraplectral" RELATED [UBERON:3000399] synonym: "extrastapes" RELATED [UBERON:3000399] synonym: "hyostapes" RELATED [UBERON:3000399] synonym: "medio-stapedial" RELATED [UBERON:3000399] synonym: "pars quadrata columellae" RELATED [UBERON:3000399] relationship: part_of UBERON:3000443 ! plectral apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000405 name: pars inferior of labyrinth namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000406 name: pars interna plectri namespace: uberon/phenoscape-anatomy def: "Plate-like structure that lies in the fenestra ovalis. It arises within the membrana opercularis in the posterior part of the fenestra." [AOO:LAP] synonym: "operculum auris" RELATED [UBERON:3000406] synonym: "operculum fenestrae ovalis" RELATED [UBERON:3000406] relationship: part_of UBERON:3000443 ! plectral apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000408 name: pars media plectri namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:3000443 ! plectral apparatus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000428 name: perilymphatic system namespace: uberon/phenoscape-anatomy def: "Consists of enlarged cistern against which the operculum and footplate of the columella rest in the oval window. Together with the endolymphatic systems comprises the membranous labryinth of the inner ear. Duellman and Trueb 1994." [] is_a: UBERON:0001032 ! sensory system relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000434 name: planum antorbitale namespace: uberon/phenoscape-anatomy is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000437 name: planum conchale namespace: uberon/phenoscape-anatomy is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000438 name: planum internasale namespace: uberon/phenoscape-anatomy is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000440 name: planum terminale namespace: uberon/phenoscape-anatomy def: "Vertical plate of cartilage that is fused posterodorsally to the oblique cartilage and anteriorly to the lamina inferior." [AAO:LAP] synonym: "pars terminalis" RELATED [UBERON:3000440] synonym: "terminal plate" RELATED [UBERON:3000440] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000441 name: planum triangulare namespace: uberon/phenoscape-anatomy def: "Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially." [AAO:LAP] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000443 name: plectral apparatus namespace: uberon/phenoscape-anatomy def: "Complex sound-conducting anatomical structure." [AAO:LAP] is_a: UBERON:0001686 ! auditory ossicle bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000448 name: posterior maxillary process namespace: uberon/phenoscape-anatomy def: "Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially." [AAO:LAP] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000449 name: posterior maxillary process dorsal process namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:3000448 ! posterior maxillary process property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000454 name: postnasal wall namespace: uberon/phenoscape-anatomy def: "Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi." [AAO:LAP] synonym: "posterior wall of nasal capsule" BROAD [] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000486 name: processus ascendens plectri namespace: uberon/phenoscape-anatomy def: "Cartilaginous or ligamentous connection between the pars externa plectri and the crista parotica." [AAO:LAP] synonym: "laterohyale" RELATED [UBERON:3000486] synonym: "processus ascendens columellae" RELATED [UBERON:3000486] synonym: "processus dorsalis columellae" RELATED [UBERON:3000486] synonym: "processus superior columellae" RELATED [UBERON:3000486] synonym: "suprastapediale" RELATED [UBERON:3000486] relationship: part_of UBERON:3000399 ! pars externa plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000492 name: processus infrafenestralis namespace: uberon/phenoscape-anatomy def: "Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage." [AAO:LAP] synonym: "dorsal crest" RELATED [UBERON:3000492] relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000509 name: processus suprafenestralis namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000538 name: recessus fenestrae ovalis namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:3000428 ! perilymphatic system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000547 name: rostral process namespace: uberon/phenoscape-anatomy def: "Is a process of the nasal bone directed anteriorly towards the rostrum." [] relationship: part_of UBERON:0001681 ! nasal bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000560 name: septum semicircularium anterior namespace: uberon/phenoscape-anatomy def: "The anterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [] relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000561 name: septum semicircularium laterale namespace: uberon/phenoscape-anatomy def: "The lateral connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [] relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000562 name: septum semircularium posterior namespace: uberon/phenoscape-anatomy def: "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [] relationship: part_of UBERON:0001846 ! internal ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000563 name: seydels palatal process namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:3000068 ! cartilago ectochoanalis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000565 name: skeletal support for eminentia olfactoria namespace: uberon/phenoscape-anatomy def: "Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria." [AAO:LAP] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000569 name: solum nasi namespace: uberon/phenoscape-anatomy def: "Unpaired, horizontal plate that forms the floor of the nasal capsule." [AAO:LAP] synonym: "nasal floor" RELATED [UBERON:3000569] synonym: "planum basale" RELATED [UBERON:3000569] synonym: "solum nasale" RELATED [UBERON:3000569] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000570 name: spatium sacculare namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:3000428 ! perilymphatic system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000580 name: stylus of pars media plectri namespace: uberon/phenoscape-anatomy synonym: "columella" RELATED [UBERON:3000580] synonym: "columella auris" RELATED [UBERON:3000580] synonym: "columellare" RELATED [UBERON:3000580] synonym: "interstapediale" RELATED [UBERON:3000580] synonym: "mediostapediale" RELATED [UBERON:3000580] synonym: "mesostapediale" RELATED [UBERON:3000580] synonym: "os columellare" RELATED [UBERON:3000580] synonym: "os intermedium" RELATED [UBERON:3000580] synonym: "stapes" RELATED [UBERON:3000580] synonym: "stelidium" RELATED [UBERON:3000580] synonym: "stilus columellare" RELATED [UBERON:3000580] relationship: part_of UBERON:3000408 ! pars media plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000586 name: superior prenasal cartilage namespace: uberon/phenoscape-anatomy def: "Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000601 name: tectum nasi namespace: uberon/phenoscape-anatomy def: "Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi." [AAO:LAP] synonym: "tectum nasale" RELATED [UBERON:3000601] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000644 name: processus lingularis of nasal skeleton namespace: uberon/phenoscape-anatomy def: "Rod-shaped process that extends caudally from the inferior edge of the planum terminale." [AAO:LAP] synonym: "lingular process" RELATED [UBERON:3000644] synonym: "processus lingularis" BROAD [] relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000645 name: corpus namespace: uberon/phenoscape-anatomy alt_id: UBERON:3010459 def: "Basal part of the septomaxilla." [AAO:LAP] synonym: "centrum" RELATED [UBERON:3000645] synonym: "pars horizontalis" RELATED [UBERON:3000645] relationship: part_of UBERON:0011167 ! septomaxilla bone property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000646 name: margo libera namespace: uberon/phenoscape-anatomy def: "Anterior, rounded portion of the corpus of the septomaxilla." [AAO:LAP] relationship: part_of UBERON:3000645 ! corpus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000647 name: crista interna namespace: uberon/phenoscape-anatomy def: "Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium." [AAO:LAP] relationship: part_of UBERON:3000492 ! processus infrafenestralis property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3000648 name: crista praeopercularis namespace: uberon/phenoscape-anatomy def: "Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis." [AAO:LAP] relationship: part_of UBERON:3000408 ! pars media plectri property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010007 name: pit organ namespace: uberon/phenoscape-anatomy alt_id: UBERON:3010823 def: "Mechanoreceptive organ of the lateral line, smaller than neuromasts, they are located on the surface of the epidermis. These receptors receive afferent and efferent innervation." [AAO:EJS] relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010079 name: upper eyelid protuberances namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:0001712 ! upper eyelid property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010105 name: anterodorsal lateral line nerve (ADLLN) namespace: uberon/phenoscape-anatomy def: "Sensory nerve of the anterior lateral line component. It develops from the preotic anterodorsal placode. ADLLN branches into two rami innervating orbital lines of neuromasts." [AAO:SIQ] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010109 name: anteroventral lateral line nerve (AVLLN) namespace: uberon/phenoscape-anatomy def: "Sensory nerve of the anterior lateral line component. It develops from preotic anteroventral placode. AVLLN innervates lower jaw lines of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010115 name: posterior lateral line nerve (PLLN) namespace: uberon/phenoscape-anatomy def: "Sensory nerve of the posterior lateral line component. It develops from de postotic posterior placode. PLLN innervates the trunk lines of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010125 name: musculus levator bulbi namespace: uberon/phenoscape-anatomy def: "Cranial nerve V innervated; ventral to the eye." [AAO:EJS] is_a: UBERON:0001601 ! extra-ocular muscle property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010126 name: middle lateral line nerve (MLLN) namespace: uberon/phenoscape-anatomy def: "Sensory nerve of the posterior lateral line component. It develops from the postotic middle placode. MLLN innervates neuromasts located over the otic capsule and the suprabranchial line of neuromasts." [AAO:EJS] is_a: UBERON:0008906 ! lateral line nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010146 name: lacrimal namespace: uberon/phenoscape-anatomy def: "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS] synonym: "ectethmoid" RELATED [UBERON:3010146] is_a: UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010197 name: lateral recess namespace: uberon/phenoscape-anatomy def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS] is_a: CARO:0000000 ! anatomical entity relationship: part_of UBERON:0001707 ! nasal cavity property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010706 name: lateral line nucleus namespace: uberon/phenoscape-anatomy relationship: part_of UBERON:0002540 ! lateral line system property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010728 name: otic opercular element namespace: uberon/phenoscape-anatomy def: "Round, flat bone or cartilage that lies in the fenestra ovalis and articulates with the columella." [AAO:DBW] synonym: "otic operculum" EXACT [] relationship: part_of UBERON:0001690 ! ear property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010735 name: ramus anterior of CN VIII namespace: uberon/phenoscape-anatomy def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS] relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010736 name: ramus posterior of CN VIII namespace: uberon/phenoscape-anatomy def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS] relationship: part_of UBERON:0001648 ! vestibulocochlear nerve property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010757 name: ramus superficial ophthalmic namespace: uberon/phenoscape-anatomy def: "Dorsal branch of ADLLN that innervates supraorbital line of neuromasts." [AAO:EJS] is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010759 name: ramus buccal namespace: uberon/phenoscape-anatomy def: "Ventral ramus of the ADLLN that innervates the infraorbital line of neuromasts." [AAO:EJS] is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010765 name: ramus mandibularis externus namespace: uberon/phenoscape-anatomy def: "Runs together with motor fibers of the hyomandibular trunk of VII. The mandibularis externus of AVLLN branches into three ramules ." [AAO:SIQ] is_a: UBERON:3010109 ! anteroventral lateral line nerve (AVLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010778 name: jugal ramule namespace: uberon/phenoscape-anatomy def: "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus." [AAO:SIQ] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010794 name: oral ramule namespace: uberon/phenoscape-anatomy def: "Medial branch of the ramus mandibularis externus. This ramule innervates the oral and angular lines of neuromasts." [AAO:EJS] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010795 name: preopercular ramule namespace: uberon/phenoscape-anatomy def: "Ventral branch of the ramus mandibularis externus. This ramule have a superior and an inferior division, both innervating the preopercular line of neuromasts." [AAO:EJS] is_a: UBERON:3010765 ! ramus mandibularis externus property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010796 name: ramus supraotic namespace: uberon/phenoscape-anatomy def: "Small ramus of the MLLN that innervates neuromasts located at the posterior margin of the otic capsule." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010798 name: ramulus suprabranchialis anterior namespace: uberon/phenoscape-anatomy def: "Ramulus that innervates the suprabranchial line of neuromasts." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010799 name: ramulus suprabranchialis posterior namespace: uberon/phenoscape-anatomy def: "Ramulus innervating the suprabranchial line of neuromasts." [AAO:SIQ] is_a: UBERON:3010126 ! middle lateral line nerve (MLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010801 name: ramus lateral namespace: uberon/phenoscape-anatomy def: "Ventral division of the trunk of the PLLN, this prominent ramus extends over the lateral trunk and caudal musculature innervating the lateral line of neuromasts." [AAO:SIQ] is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010804 name: ramus ventral namespace: uberon/phenoscape-anatomy def: "This ramus leaves the postotic ganglionic complex together with the third branchial ramus of X. This ramule innervates the ventral line of neuromasts." [AAO:SIQ] is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:3010827 name: anterior prenasal cartilage namespace: uberon/phenoscape-anatomy is_a: UBERON:0001823 ! nasal cartilage relationship: part_of UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators [Term] id: UBERON:4200199 name: sallet sensory system def: "Ciliary restraint system in the inner ear that uses sallets instead of the tectorial membrane." [] synonym: "sallet restraint system" EXACT [] relationship: part_of UBERON:0002105 ! vestibulo-auditory system created_by: AD [Term] id: UBERON:4300005 name: aphakic space namespace: none def: "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision. " [] xref: http://www.briancoad.com/Dictionary/Introduction%20and%20A-F.htm relationship: part_of UBERON:0000970 ! eye created_by: WD [Term] id: UBERON:4300126 name: tectorial restraint system def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear. In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates). [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]" [] is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001846 ! internal ear created_by: WD [Term] id: UBERON:4300176 name: parietal branch of the supraorbital canal def: "Branch of supraorbital sensory canal that extends to the parietal." [] is_a: UBERON:2001612 ! sensory canal relationship: part_of UBERON:2001873 ! head sensory canal system created_by: http://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300181 name: posterior sclerotic cartilage def: "Sclerotic cartilage that is located posterior to the eye." [] is_a: UBERON:0010289 ! scleral cartilage created_by: http://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300182 name: anterior sclerotic cartilage def: "Sclerotic cartilage that is located anterior to the eye." [] is_a: UBERON:0010289 ! scleral cartilage created_by: http://orcid.org/0000-0003-3162-7490 [Term] id: UBERON:4300238 name: pored lateral line scale is_a: UBERON:2001824 ! lateral line scale created_by: WD [Term] id: UBERON:4300241 name: ethmoid commissure def: "Sensory canal that traverses the rostral bone." [] synonym: "ethmoid lateral line commissure" EXACT [] is_a: UBERON:2001612 ! sensory canal created_by: WD [Term] id: UBERON:4300242 name: lateral line scale 6 def: "The sixth scale in the lateral line series." [] is_a: UBERON:2001824 ! lateral line scale created_by: WD [Term] id: UBERON:6002639 name: insect larval sense organ namespace: uberon def: "Any sense organ that is part of some larva." [FBC:auto_generated_definition] synonym: "larval sense organ" EXACT [] xref: FBbt:00002639 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:6002642 name: insect embryonic/larval ocular segment sensillum namespace: uberon def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition] synonym: "larval ocular segment sensillum" EXACT [] xref: FBbt:00002642 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6007280 ! insect embryonic/larval head sense organ [Term] id: UBERON:6005168 name: insect external sensory organ namespace: uberon synonym: "sensillum" NARROW [] xref: FBbt:00005168 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:6005177 name: insect chaeta namespace: uberon def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, FlyBase:FBrf0166419] synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704] xref: FBbt:00005177 is_a: UBERON:6007232 ! insect eo-type sensillum [Term] id: UBERON:6005805 name: insect Bolwig organ namespace: uberon def: "Visual organ of the larva. It consists of a dense cluster of 12 ciliated photoreceptor neurons." [FlyBase:FBrf0089570] synonym: "Bolwig's organ" EXACT [] synonym: "dorsocaudal pharyngeal sense organ" RELATED [] synonym: "embryonic Bolwig's organ" EXACT [] synonym: "embryonic visual system" EXACT [] synonym: "larval Bolwig's organ" EXACT [] xref: FBbt:00005805 is_a: UBERON:0000970 ! eye is_a: UBERON:6002642 ! insect embryonic/larval ocular segment sensillum is_a: UBERON:6007233 ! insect internal sensillum is_a: UBERON:6007242 ! insect embryonic/larval head sensillum [Term] id: UBERON:6007231 name: insect external sensillum namespace: uberon def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS] xref: FBbt:00007231 is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6005168 ! insect external sensory organ [Term] id: UBERON:6007232 name: insect eo-type sensillum namespace: uberon def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570] synonym: "eso" RELATED [] xref: FBbt:00007232 is_a: UBERON:6007231 ! insect external sensillum [Term] id: UBERON:6007233 name: insect internal sensillum namespace: uberon def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] xref: FBbt:00007233 is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6007373 ! insect internal sense organ [Term] id: UBERON:6007240 name: insect embryonic/larval sensillum namespace: uberon def: "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] synonym: "larval sensillum" EXACT [] xref: FBbt:00007240 is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6002639 ! insect larval sense organ [Term] id: UBERON:6007242 name: insect embryonic/larval head sensillum namespace: uberon def: "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sensillum" NARROW [] xref: FBbt:00007242 is_a: UBERON:0000963 ! head sensillum is_a: UBERON:6007240 ! insect embryonic/larval sensillum is_a: UBERON:6007280 ! insect embryonic/larval head sense organ [Term] id: UBERON:6007280 name: insect embryonic/larval head sense organ namespace: uberon def: "Any sense organ (UBERON:6005155) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sense organ" EXACT [] xref: FBbt:00007280 is_a: UBERON:6002639 ! insect larval sense organ [Term] id: UBERON:6007373 name: insect internal sense organ namespace: uberon def: "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] xref: FBbt:00007373 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:8000004 name: central retina namespace: uberon def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] relationship: part_of UBERON:0000966 ! retina created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: UBERON:8000005 name: Henle's fiber layer namespace: uberon def: "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL)." [http://www.ncbi.nlm.nih.gov/pubmed/21071737] synonym: "Henle fiber layer" EXACT [] synonym: "HFL" EXACT [] synonym: "nerve fiber layer of Henle" EXACT [] relationship: part_of UBERON:0000966 ! retina created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: http://owltools.org/Q [Typedef] id: part_of name: part of name: part_of namespace: external namespace: protein namespace: quality namespace: uberon def: "a core relation that holds between a part and its whole" [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam xref: BFO:0000050 property_value: IAO:0000111 "is part of" xsd:string property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 property_value: RO:0040042 BFO:0000002 property_value: RO:0040042 BFO:0000003 property_value: RO:0040042 BFO:0000004 property_value: RO:0040042 BFO:0000017 property_value: RO:0040042 BFO:0000019 property_value: RO:0040042 BFO:0000020 property_value: RO:0040042 BFO:0000031 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true