format-version: 1.2
ontology: uberon/subsets/sensory-minimal

[Term]
id: BFO:0000001
name: entity

[Term]
id: BFO:0000002
name: continuant
is_a: BFO:0000001 ! entity
relationship: part_of BFO:0000002 ! continuant

[Term]
id: BFO:0000004
name: independent continuant
is_a: BFO:0000002 ! continuant
relationship: part_of BFO:0000004 ! independent continuant

[Term]
id: BFO:0000040
name: material entity
is_a: BFO:0000004 ! independent continuant

[Term]
id: CARO:0000000
name: anatomical entity
is_a: CARO:0030000 ! biological entity

[Term]
id: CARO:0030000
name: biological entity
is_a: BFO:0000004 ! independent continuant

[Term]
id: CL:0000006
name: neuronal receptor cell
namespace: cell
synonym: "neuronal receptor cell (sensu Animalia)" EXACT []
is_a: CL:0000197 ! sensory receptor cell

[Term]
id: CL:0000098
name: sensory epithelial cell
namespace: cell
def: "A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells." []
comment: The term "neuroepithelial cell" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710).
synonym: "neuroepithelial cell" BROAD []
xref: BTO:0004301
is_a: CL:0000197 ! sensory receptor cell

[Term]
id: CL:0000197
name: sensory receptor cell
namespace: cell
def: "A cell that is capable of detection of a stimulus involved in sensory perception." []
synonym: "receptor cell" EXACT []
relationship: part_of UBERON:0001032 ! sensory system

[Term]
id: CL:0000198
name: pain receptor cell
namespace: cell
def: "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings." []
comment: Editor note: request detection of stimulus involved in sensory perception of pain; add develops_from relationship
synonym: "nociceptor" EXACT []
synonym: "nocireceptor" EXACT []
is_a: CL:0000006 ! neuronal receptor cell

[Term]
id: CL:0000202
name: auditory hair cell
namespace: cell
alt_id: CL:0000201
def: "A mechanoreceptor cell located in the inner ear that is sensitive to auditory stimuli. The accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." []
comment: In mammals these cells are located in the organ of Corti.
synonym: "auditory receptor cell" EXACT []
synonym: "cochlear hair cell" EXACT []
synonym: "inner ear hair cell" RELATED []
synonym: "inner ear receptor cell" RELATED []
xref: FMA:62364
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0002491 ! auditory epithelial cell
relationship: part_of UBERON:0002227 ! spiral organ of cochlea

[Term]
id: CL:0000203
name: gravity sensitive cell
namespace: cell
is_a: CL:0000006 ! neuronal receptor cell

[Term]
id: CL:0000204
name: acceleration receptive cell
namespace: cell
is_a: CL:0000006 ! neuronal receptor cell

[Term]
id: CL:0000205
name: thermoreceptor cell
namespace: cell
def: "A cellular receptor which mediates the sense of temperature. Thermoreceptor cells in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain." []
is_a: CL:0000006 ! neuronal receptor cell

[Term]
id: CL:0000207
name: olfactory receptor cell
namespace: cell
synonym: "odorant receptor cell" EXACT []
synonym: "olfactory receptor neuron" EXACT []
synonym: "olfactory sensory neuron" EXACT []
synonym: "Schultze's cell" EXACT []
xref: BTO:0004185
xref: FMA:67860
xref: Wikipedia:Olfactory_receptor_neuron
is_a: CL:0000006 ! neuronal receptor cell
relationship: part_of UBERON:0005725 ! olfactory system

[Term]
id: CL:0000209
name: taste receptor cell
namespace: cell
def: "A cell type found in the spherical or ovoid clusters of receptor cells found mainly in the epithelium of the tongue and constituting the end organs of the sense of taste." []
synonym: "taste bud cell" EXACT []
xref: FMA:67910
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell

[Term]
id: CL:0000210
name: photoreceptor cell
namespace: cell
def: "A cell specialized to detect and transduce light." []
xref: BTO:0001060
xref: CALOHA:TS-0868
xref: FBbt:00004211
xref: FMA:86740
is_a: CL:0000006 ! neuronal receptor cell

[Term]
id: CL:0000287
name: eye photoreceptor cell
namespace: cell
is_a: CL:0000210 ! photoreceptor cell
relationship: part_of UBERON:0000970 ! eye

[Term]
id: CL:0000315
name: tears secreting cell
namespace: cell
def: "A cell secreting tears, the fluid secreted by the lacrimal glands. This fluid moistens the conjunctiva and cornea." []
relationship: part_of UBERON:0001817 ! lacrimal gland

[Term]
id: CL:0000347
name: scleral cell
namespace: cell
def: "A cell of the sclera of the eye." []
relationship: part_of UBERON:0001773 ! sclera

[Term]
id: CL:0000348
name: choroidal cell of the eye
namespace: cell
def: "A cell of the choroid of the eye." []
relationship: part_of UBERON:0001776 ! optic choroid

[Term]
id: CL:0000376
name: humidity receptor cell
namespace: cell
is_a: CL:0000006 ! neuronal receptor cell

[Term]
id: CL:0000488
name: visible light photoreceptor cell
namespace: cell
def: "A photoreceptor cell that detects visible light." []
is_a: CL:0000210 ! photoreceptor cell

[Term]
id: CL:0000489
name: scotopic photoreceptor cell
namespace: cell
is_a: CL:0000210 ! photoreceptor cell

[Term]
id: CL:0000490
name: photopic photoreceptor cell
namespace: cell
is_a: CL:0000488 ! visible light photoreceptor cell

[Term]
id: CL:0000494
name: UV sensitive photoreceptor cell
namespace: cell
def: "A photoreceptor cell that detects ultraviolet light." []
is_a: CL:0000210 ! photoreceptor cell

[Term]
id: CL:0000495
name: blue sensitive photoreceptor cell
namespace: cell
def: "A photoreceptor cell that is sensitive to blue light." []
is_a: CL:0000490 ! photopic photoreceptor cell

[Term]
id: CL:0000496
name: green sensitive photoreceptor cell
namespace: cell
def: "A photoreceptor cell that is sensitive to green light." []
is_a: CL:0000490 ! photopic photoreceptor cell

[Term]
id: CL:0000497
name: red sensitive photoreceptor cell
namespace: cell
def: "A photoreceptor cell that is sensitive to red light." []
is_a: CL:0000490 ! photopic photoreceptor cell

[Term]
id: CL:0000551
name: unimodal nocireceptor
namespace: cell
is_a: CL:0000198 ! pain receptor cell

[Term]
id: CL:0000567
name: polymodal nocireceptor
namespace: cell
is_a: CL:0000198 ! pain receptor cell

[Term]
id: CL:0000573
name: retinal cone cell
namespace: cell
def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." []
xref: BTO:0001036
xref: CALOHA:TS-0866
xref: FMA:67748
is_a: CL:0010009 ! camera-type eye photoreceptor cell

[Term]
id: CL:0000575
name: corneal epithelial cell
namespace: cell
alt_id: CL:1000431
def: "An epithelial cell of the cornea." []
synonym: "epithelial cell of cornea" EXACT []
xref: BTO:0004298
xref: CALOHA:TS-0173
xref: FMA:70551
relationship: part_of UBERON:0000964 ! cornea

[Term]
id: CL:0000587
name: cold sensing thermoreceptor cell
namespace: cell
def: "A thermoreceptor cell that detects reduced temperatures." []
is_a: CL:0000205 ! thermoreceptor cell

[Term]
id: CL:0000589
name: cochlear inner hair cell
namespace: cell
def: "A bulbous cell that is medially placed in one row in the organ of Corti. In contrast to the outer hair cells, the inner hair cells are fewer in number, have fewer sensory hairs, and are less differentiated." []
synonym: "inner hair cell" BROAD []
xref: BTO:0003667
xref: FMA:62365
is_a: CL:0000202 ! auditory hair cell

[Term]
id: CL:0000591
name: warmth sensing thermoreceptor cell
namespace: cell
def: "A thermoreceptor cell that detects increased temperatures." []
is_a: CL:0000205 ! thermoreceptor cell

[Term]
id: CL:0000601
name: outer hair cell
namespace: cell
def: "A mechanoreceptor in the organ of Corti. In mammals the outer hair cells are arranged in three rows which are further from the modiolus than the single row of inner hair cells. The motile properties of the outer hair cells may contribute actively to tuning the sensitivity and frequency selectivity of the cochlea." []
synonym: "cochlear outer hair cell" EXACT []
xref: BTO:0003666
xref: FMA:62366
is_a: CL:0000202 ! auditory hair cell

[Term]
id: CL:0000602
name: pressoreceptor cell
namespace: cell
def: "A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls." []
is_a: CL:1000082 ! stretch receptor cell

[Term]
id: CL:0000604
name: retinal rod cell
namespace: cell
def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." []
xref: BTO:0001024
xref: CALOHA:TS-0870
xref: FMA:67747
is_a: CL:0010009 ! camera-type eye photoreceptor cell

[Term]
id: CL:0000633
name: Hensen cell
namespace: cell
def: "A tall supporting cell that is arranged in rows adjacent to the last row of outer phalangeal cells. This cell type constitutes the outer border of the organ of Corti." []
synonym: "cell of Hensen" EXACT []
synonym: "external limiting cell of organ of Corti" EXACT []
synonym: "Hensen's cell" EXACT []
xref: FMA:79799
is_a: CL:0002490 ! organ of Corti supporting cell

[Term]
id: CL:0000634
name: Claudius cell
namespace: cell
def: "A cuboidal cell which along with Boettcher's cells form the floor of the external spiral sulcus, external to the organ of Corti." []
synonym: "cell of Claudius" EXACT []
synonym: "external supporting cell of Claudius" RELATED []
synonym: "external supporting cell of vestibular epithelium" EXACT []
xref: FMA:79802
is_a: CL:0002315 ! supporting cell of cochlea

[Term]
id: CL:0000635
name: Deiter's cell
namespace: cell
def: "The outer phalangeal cells of the organ of Corti. This cell holds the base of the hair cell in a cup-shaped depression." []
synonym: "Deiters cell" EXACT []
synonym: "outer phalangeal cell" EXACT []
xref: FMA:75725
is_a: CL:0002165 ! phalangeal cell

[Term]
id: CL:0000687
name: R1 photoreceptor cell
namespace: cell
synonym: "R1 cell" EXACT []
is_a: CL:0000488 ! visible light photoreceptor cell
is_a: CL:2000019 ! compound eye photoreceptor cell
relationship: part_of UBERON:0000971 ! ommatidium

[Term]
id: CL:0000690
name: R2 photoreceptor cell
namespace: cell
synonym: "R2 cell" EXACT []
is_a: CL:0000488 ! visible light photoreceptor cell
is_a: CL:2000019 ! compound eye photoreceptor cell
relationship: part_of UBERON:0000971 ! ommatidium

[Term]
id: CL:0000694
name: R3 photoreceptor cell
namespace: cell
synonym: "R3 cell" EXACT []
is_a: CL:0000488 ! visible light photoreceptor cell
is_a: CL:2000019 ! compound eye photoreceptor cell
relationship: part_of UBERON:0000971 ! ommatidium

[Term]
id: CL:0000697
name: R4 photoreceptor cell
namespace: cell
synonym: "R4 cell" EXACT []
is_a: CL:0000488 ! visible light photoreceptor cell
is_a: CL:2000019 ! compound eye photoreceptor cell
relationship: part_of UBERON:0000971 ! ommatidium

[Term]
id: CL:0000702
name: R5 photoreceptor cell
namespace: cell
synonym: "R5 cell" EXACT []
is_a: CL:0000488 ! visible light photoreceptor cell
is_a: CL:2000019 ! compound eye photoreceptor cell
relationship: part_of UBERON:0000971 ! ommatidium

[Term]
id: CL:0000705
name: R6 photoreceptor cell
namespace: cell
synonym: "R6 cell" EXACT []
is_a: CL:0000488 ! visible light photoreceptor cell
is_a: CL:2000019 ! compound eye photoreceptor cell
relationship: part_of UBERON:0000971 ! ommatidium

[Term]
id: CL:0000707
name: R7 photoreceptor cell
namespace: cell
synonym: "R7 cell" EXACT []
is_a: CL:0000287 ! eye photoreceptor cell
is_a: CL:0000494 ! UV sensitive photoreceptor cell

[Term]
id: CL:0000709
name: R8 photoreceptor cell
namespace: cell
synonym: "R8 cell" EXACT []
is_a: CL:0000488 ! visible light photoreceptor cell
is_a: CL:2000019 ! compound eye photoreceptor cell
relationship: part_of UBERON:0000971 ! ommatidium

[Term]
id: CL:0000718
name: compound eye cone cell
namespace: cell
synonym: "cone cell (sensu Endopterygota)" RELATED []
relationship: part_of UBERON:0000018 ! compound eye

[Term]
id: CL:0000719
name: posterior cone cell (sensu Endopterygota)
namespace: cell
is_a: CL:0000718 ! compound eye cone cell

[Term]
id: CL:0000720
name: anterior cone cell (sensu Endopterygota)
namespace: cell
is_a: CL:0000718 ! compound eye cone cell

[Term]
id: CL:0000721
name: equatorial cone cell (sensu Endopterygota)
namespace: cell
is_a: CL:0000718 ! compound eye cone cell

[Term]
id: CL:0000745
name: retina horizontal cell
namespace: cell
def: "A neuron that laterally connects other neurons in the inner nuclear layer of the retina." []
synonym: "horizontal cell" EXACT []
xref: BTO:0004120
is_a: CL:0009004 ! retinal cell
relationship: part_of UBERON:0003902 ! retinal neural layer

[Term]
id: CL:0000748
name: retinal bipolar neuron
def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer." []
is_a: CL:0009004 ! retinal cell
relationship: part_of UBERON:0000966 ! retina

[Term]
id: CL:0000749
name: ON-bipolar cell
namespace: cell
def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors." []
is_a: CL:0000748 ! retinal bipolar neuron

[Term]
id: CL:0000750
name: OFF-bipolar cell
namespace: cell
def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells depolatize in response to light to dark transition." []
is_a: CL:0000748 ! retinal bipolar neuron

[Term]
id: CL:0000751
name: rod bipolar cell
namespace: cell
def: "A bipolar neuron found in the retina that is synapsed by rod photoreceptor cells but not by cone photoreceptor cells.  These neurons depolarize in response to light." []
xref: FMA:67750
is_a: CL:0000748 ! retinal bipolar neuron

[Term]
id: CL:0000752
name: cone retinal bipolar cell
namespace: cell
def: "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer." []
is_a: CL:0000748 ! retinal bipolar neuron

[Term]
id: CL:0000753
name: type 1 cone bipolar cell (sensu Mus)
def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell body of these cells is in the middle of the inner plexiform layer. The dendritic tree is stout and the axon terminates in sublamina 1. The axonal terminal is wide and has only a few varicosities." []
synonym: "DB1 cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000754
name: type 2 cone bipolar cell (sensu Mus)
namespace: cell
def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is not well filled and the dendrites are more delicate than in type 1 cells. The axon terminal is bushier and exhibits a dense plexus of varicosities in the inner part of sublamina 1 (Ghosh et al., 2004).  It can be differentiated from other retinal bipolar neurons by its expression of marker genes: Neto1, Lhx3 and Irx-6 (Shekhar, 2016)." []
synonym: "FMB cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000755
name: type 3 cone bipolar cell (sensu Mus)
namespace: cell
def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The dendritic tree is delicate and the dendritic tips appear small when compared with type 1 cells. The axon terminal is stratified and restricted to sublamina 2 of the inner plexiform layer." []
synonym: "DB2 cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000756
name: type 4 cone bipolar cell (sensu Mus)
namespace: cell
def: "An OFF-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the outer half of the inner plexiform layer. The cell has a diffuse axon terminal with varicosities in sublaminae 1 and 2 of the inner plexiform layer." []
synonym: "DB3 cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000757
name: type 5 cone bipolar cell (sensu Mus)
namespace: cell
def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is restricted to sublamina 3 of the inner plexiform layer. It is narrowly stratified and branched. The dendritic tree has many delicate branches." []
synonym: "DB4 cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000758
name: type 6 cone bipolar cell (sensu Mus)
namespace: cell
def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The cell has a loose, delicate axon terminal that opens in sublamina 3 of the inner plexiform layer and descends into sublamina 4." []
synonym: "DB5 cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000759
name: type 7 cone bipolar cell (sensu Mus)
namespace: cell
def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The axon terminal is narrowly stratified and are found just below a calretinin-expressing band in sublamina 4 of the inner plexiform layer." []
synonym: "IMB cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000760
name: type 8 cone bipolar cell (sensu Mus)
namespace: cell
def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. This cell has the widest dendritic field and the widest axon terminal of all retinal bipolar cells. The axon terminal is delicate and stratified through sublaminae 4 and 5 of the inner plexiform layer." []
synonym: "DB6 cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000761
name: type 9 cone bipolar cell (sensu Mus)
namespace: cell
def: "An ON-bipolar neuron found in the retina and having connections with cone photoreceptors cells and neurons in the inner half of the inner plexiform layer. The dendritic tree is wide and the dendritic convergence indicates cone selectivity. The axon terminal is sparsely branched and terminates in sublamina 5 of the inner plexiform layer." []
synonym: "BB cone bipolar cell" EXACT []
is_a: CL:0000752 ! cone retinal bipolar cell

[Term]
id: CL:0000847
name: ciliated olfactory receptor neuron
namespace: cell
def: "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob." []
synonym: "ciliated olfactory sensory neuron" EXACT []
synonym: "ciliated sensory neuron" EXACT []
is_a: CL:0000207 ! olfactory receptor cell

[Term]
id: CL:0000848
name: microvillous olfactory receptor neuron
namespace: cell
def: "An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli." []
synonym: "microvillous olfactory sensory neuron" EXACT []
synonym: "microvillous sensory neuron" RELATED []
is_a: CL:0000207 ! olfactory receptor cell

[Term]
id: CL:0000849
name: crypt olfactory receptor neuron
namespace: cell
def: "An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli." []
synonym: "crypt cell" EXACT []
synonym: "crypt olfactory sensory neuron" EXACT []
synonym: "crypt sensory neuron" EXACT []
is_a: CL:0000207 ! olfactory receptor cell

[Term]
id: CL:0000851
name: neuromast mantle cell
namespace: cell
def: "Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded." []
relationship: part_of UBERON:0008904 ! neuromast

[Term]
id: CL:0000852
name: neuromast support cell
namespace: cell
def: "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells." []
relationship: part_of UBERON:0008904 ! neuromast

[Term]
id: CL:0000853
name: olfactory epithelial support cell
namespace: cell
def: "Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons." []
synonym: "olfactory sustentacular cell" EXACT []
synonym: "supporting cell of olfactory epithelium" EXACT []
synonym: "sustentaculocyte of olfactory epithelium" EXACT []
xref: FMA:62302
is_a: CL:0002169 ! basal cell of olfactory epithelium

[Term]
id: CL:0000856
name: neuromast hair cell
namespace: cell
def: "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." []
is_a: CL:0000006 ! neuronal receptor cell
relationship: part_of UBERON:0008904 ! neuromast

[Term]
id: CL:0002084
name: Boettcher cell
namespace: cell
def: "A Boettcher cell is a polyhedral cells on the basilar membrane of the cochlea, and is located beneath Claudius cells. A Boettcher cell is considered a supporting cell for the organ of Corti, and is present only in the lower turn of the cochlea. These cells interweave with each other, and project microvilli into the intercellular space. Because of their structural specialization, a Boettcher cell is believed to play a significant role in the function of the cochlea. They demonstrate high levels of calmodulin, and may be involved in mediating Ca(2+) regulation and ion transport." []
synonym: "Boettcher's cell" EXACT []
synonym: "Bottcher cell" EXACT []
synonym: "Bottcher's cell" EXACT []
is_a: CL:0002315 ! supporting cell of cochlea
created_by: tmeehan
creation_date: 2010-07-14T03:22:02Z

[Term]
id: CL:0002162
name: internal epithelial cell of tympanic membrane
namespace: cell
def: "An extremely flattened cell type found on the inner side of the tympanic membrane. The surface of this cell type carries sparse pleomorphic microvilli that are more common near the junctional zones." []
xref: FMA:70626
relationship: part_of UBERON:0002364 ! tympanic membrane
created_by: tmeehan
creation_date: 2010-08-25T10:49:46Z

[Term]
id: CL:0002163
name: internal pillar cell of cochlea
namespace: cell
def: "A rod-shpaed cell that forms a single row adjacent to and supporting the inner hair cells." []
xref: FMA:75722
xref: FMA:75726
is_a: CL:1000191 ! pillar cell
created_by: tmeehan
creation_date: 2010-08-25T11:05:21Z

[Term]
id: CL:0002164
name: external pillar cell of cochlea
namespace: cell
def: "A rod-shaped cell found in 3 or 4 rows that lie adjacent to and support the outer hair cells." []
xref: FMA:75727
is_a: CL:1000191 ! pillar cell
created_by: tmeehan
creation_date: 2010-08-25T11:05:23Z

[Term]
id: CL:0002165
name: phalangeal cell
namespace: cell
def: "A supporting cell that is attached to the basement membrane and forms rows that support the hair cells." []
xref: FMA:79800
is_a: CL:0002490 ! organ of Corti supporting cell
created_by: tmeehan
creation_date: 2010-08-25T01:29:07Z

[Term]
id: CL:0002167
name: olfactory epithelial cell
namespace: cell
def: "A specialized cell involved in sensory perception of smell." []
xref: FMA:67870
is_a: CL:0000098 ! sensory epithelial cell
created_by: tmeehan
creation_date: 2010-08-26T01:47:13Z

[Term]
id: CL:0002168
name: border cell of cochlea
namespace: cell
def: "A border cell is a slender columnar cell on the medial portion of the basilar membrane." []
xref: FMA:79798
is_a: CL:0002315 ! supporting cell of cochlea
created_by: tmeehan
creation_date: 2010-08-25T01:47:12Z

[Term]
id: CL:0002169
name: basal cell of olfactory epithelium
namespace: cell
alt_id: CL:1000395
def: "An epithelial cell located on the basal lamina of the olfactory epithelium." []
synonym: "horizontal basal call" BROAD []
xref: FMA:62303
is_a: CL:0002167 ! olfactory epithelial cell
relationship: part_of UBERON:0001997 ! olfactory epithelium
created_by: tmeehan
creation_date: 2010-08-26T01:58:54Z

[Term]
id: CL:0002171
name: globose cell of olfactory epithelium
namespace: cell
def: "A rounded or elliptical epithelial cell, with pale-staining open face nucleus and pale cytoplasm rich in free ribosomes and clusters of centrioles; form a distinct basal zone spaced slightly from the basal surface of the epithelium." []
synonym: "blastema cell of olfactory epithelium" EXACT []
xref: FMA:67874
is_a: CL:0002169 ! basal cell of olfactory epithelium
created_by: tmeehan
creation_date: 2010-08-26T01:59:18Z

[Term]
id: CL:0002172
name: interdental cell of cochlea
namespace: cell
def: "A long, spindle-shaped supporting cells arranged in parallel rows that secretes components of the tectorial membrane and potassium ions into the endolymph." []
synonym: "interdental cell" EXACT []
xref: FMA:79797
is_a: CL:0002315 ! supporting cell of cochlea
relationship: part_of UBERON:0002276 ! lamina of spiral limbus
created_by: tmeehan
creation_date: 2010-08-25T02:02:48Z

[Term]
id: CL:0002184
name: basal proper cell of olfactory epithelium
namespace: cell
def: "A flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells; lie in contact with the basal lamina of olfactory epithelium." []
synonym: "horizontal basal cells" EXACT []
xref: FMA:62304
is_a: CL:0002169 ! basal cell of olfactory epithelium
created_by: tmeehan
creation_date: 2010-08-26T01:59:22Z

[Term]
id: CL:0002222
name: vertebrate lens cell
namespace: cell
def: "A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." []
xref: FMA:70950
relationship: part_of UBERON:0000965 ! lens of camera-type eye
created_by: tmeehan
creation_date: 2010-09-07T10:38:03Z

[Term]
id: CL:0002223
name: anterior lens cell
namespace: cell
def: "A cell of the transparent layer of simple cuboidal epithelium over the anterior surface of the lens; transform into lens fiber(s)." []
xref: FMA:63181
is_a: CL:0002224 ! lens epithelial cell
created_by: tmeehan
creation_date: 2010-09-07T10:45:45Z

[Term]
id: CL:0002224
name: lens epithelial cell
namespace: cell
def: "A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth." []
xref: FMA:67559
is_a: CL:0002222 ! vertebrate lens cell
relationship: part_of UBERON:0001803 ! epithelium of lens
created_by: tmeehan
creation_date: 2010-09-07T10:45:47Z

[Term]
id: CL:0002225
name: secondary lens fiber
namespace: cell
def: "A lens fiber cell that develops from primary lens fiber; located towards the center of lens; cell organelles are normally degraded or in the process of being degraded." []
synonym: "secondary lens fibre" EXACT []
is_a: CL:0011004 ! lens fiber cell
created_by: tmeehan
creation_date: 2010-09-07T10:53:39Z

[Term]
id: CL:0002226
name: non-nucleated secondary lens fiber
namespace: cell
def: "A secondary lens fiber cell that lacks a nucleus." []
synonym: "non-nucleated secondary lens fibre" EXACT []
xref: FMA:67561
is_a: CL:0002225 ! secondary lens fiber
created_by: tmeehan
creation_date: 2010-09-07T11:15:23Z

[Term]
id: CL:0002227
name: nucleated secondary lens fiber
namespace: cell
def: "A secondary fiber cell that contains a nucleus." []
synonym: "nucleated secondary lens fibre" EXACT []
xref: FMA:70949
is_a: CL:0002225 ! secondary lens fiber
created_by: tmeehan
creation_date: 2010-09-07T11:15:26Z

[Term]
id: CL:0002228
name: primary lens fiber
namespace: cell
def: "An elongating cell that rapidly obliterates the lumen of the lens vesicle. Subsequently, differentiation of this cell type at the lens equator leads to the formation of secondary fiber cells that come to overlie the primary fibers." []
synonym: "primary lens fibre" EXACT []
xref: FMA:70613
is_a: CL:0011004 ! lens fiber cell
created_by: tmeehan
creation_date: 2010-09-07T11:19:01Z

[Term]
id: CL:0002243
name: smooth muscle cell of sphincter of pupil
namespace: cell
def: "A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells." []
synonym: "smooth muscle fiber of sphincter of pupil" EXACT []
synonym: "smooth muscle fibre of sphincter of pupil" RELATED []
xref: FMA:70611
relationship: part_of UBERON:0001607 ! sphincter pupillae
created_by: tmeehan
creation_date: 2010-09-08T08:53:42Z

[Term]
id: CL:0002285
name: type III taste bud cell
namespace: cell
def: "A taste receptor cell that is characterized by morphologically identifiable synaptic contacts with the gustatory nerve fibers and expression of the synaptic membrane protein-25 (SNAP-25) and NCAM." []
synonym: "taste bud basal cell" BROAD []
synonym: "type 3 taste cell" EXACT []
xref: FMA:67940
is_a: CL:0000209 ! taste receptor cell
created_by: tmeehan
creation_date: 2010-09-13T10:57:21Z

[Term]
id: CL:0002286
name: type II taste cell
namespace: cell
def: "A taste receptor cell that has a short microvilli, a projecting apical region, a large rounded nucleus, and expresses taste chemoreceptors thus making them the transducing cell for taste qualities." []
synonym: "type 2 taste cell" EXACT []
xref: FMA:62381
is_a: CL:0000209 ! taste receptor cell
created_by: tmeehan
creation_date: 2010-09-13T10:57:26Z

[Term]
id: CL:0002287
name: type IV taste receptor cell
namespace: cell
def: "A rounded, mitotically active stem cell which is the source of new cells of the taste bud; located basally." []
comment: There is debate about the exact lineage of these cell types from this progenitor. See PMID:15738192.
synonym: "taste bud basal cell" BROAD []
synonym: "type 4 taste cell" EXACT []
xref: FMA:62380
is_a: CL:0000209 ! taste receptor cell
created_by: tmeehan
creation_date: 2010-09-13T10:57:29Z

[Term]
id: CL:0002288
name: type V taste receptor cell
namespace: cell
def: "A cell type that forms the boundary with the surrounding epithelium." []
xref: FMA:67941
is_a: CL:0000209 ! taste receptor cell
created_by: tmeehan
creation_date: 2010-09-13T10:57:31Z

[Term]
id: CL:0002289
name: type I taste bud cell
namespace: cell
def: "A densely staining taste receptor cell that contains many dense vacuoles in their apical regions which project into the apical space and bear microvilli. This cell type serves as a supporting cell by surrounding and isolating the other cell types from each other; secrete a dense amorphous material that surrounds the microvilli in the taste pore. This cell type expresses a glial glutumate transporter, GLAST." []
synonym: "dark tongue cell" EXACT []
synonym: "type I taste cell" EXACT []
synonym: "type taste 1 cell" EXACT []
xref: FMA:62356
is_a: CL:0000209 ! taste receptor cell
created_by: tmeehan
creation_date: 2010-09-13T10:57:35Z

[Term]
id: CL:0002314
name: external supporting cell of vestibular epithelium
namespace: cell
def: "An auditory epithelial support cell located in the vestibular epithelium that has many hallmarks of glial cells. This cell type express glial markers such as vimentin, S100, glutamate-aspartate transporter, low affinity neurotrophin receptor p75, glial fibrillary acidic protein, and proteolipid protein." []
xref: FMA:75809
is_a: CL:0002316 ! supporting cell of vestibular epithelium
created_by: tmeehan
creation_date: 2010-09-14T03:20:01Z

[Term]
id: CL:0002315
name: supporting cell of cochlea
namespace: cell
def: "An epithelial supporting cell located in the cochlea." []
xref: FMA:79796
is_a: CL:0005014 ! auditory epithelial support cell
relationship: part_of UBERON:0001844 ! cochlea
created_by: tmeehan
creation_date: 2010-09-14T03:31:38Z

[Term]
id: CL:0002316
name: supporting cell of vestibular epithelium
namespace: cell
def: "A supporting cell of the vestibular epithelium." []
xref: FMA:75607
is_a: CL:0005014 ! auditory epithelial support cell
relationship: part_of UBERON:0001862 ! vestibular labyrinth
created_by: tmeehan
creation_date: 2010-09-14T03:31:44Z

[Term]
id: CL:0002317
name: external limiting cell of vestibular epithelium
namespace: cell
def: "An external limiting cell found in the vestibular epithelium." []
xref: FMA:75808
is_a: CL:0002316 ! supporting cell of vestibular epithelium
created_by: tmeehan
creation_date: 2010-09-14T03:33:50Z

[Term]
id: CL:0002363
name: keratocyte
namespace: cell
def: "A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate." []
synonym: "corneal fibroblast" EXACT []
synonym: "corneal keratocyte" EXACT []
relationship: part_of UBERON:0001777 ! substantia propria of cornea
created_by: tmeehan
creation_date: 2010-09-22T01:57:40Z

[Term]
id: CL:0002367
name: trabecular meshwork cell
namespace: cell
def: "A cell that lines the trabecular meshwork, which is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). This cell may play a role in regulating intraocular pressure." []
synonym: "trabeculocyte" EXACT []
relationship: part_of UBERON:0005969 ! eye trabecular meshwork
created_by: tmeehan
creation_date: 2010-09-23T04:18:50Z

[Term]
id: CL:0002480
name: nasal mucosa goblet cell
namespace: cell
def: "A goblet cell located in the nasal epithelium." []
xref: MP:0002262
relationship: part_of UBERON:0005384 ! nasal cavity epithelium
created_by: tmeehan
creation_date: 2010-12-03T03:03:02Z

[Term]
id: CL:0002485
name: retinal melanocyte
namespace: cell
def: "A melanocyte of the retina. This cell type is distinct from pigmented retinal epithelium." []
relationship: part_of UBERON:0000966 ! retina
created_by: tmeehan
creation_date: 2010-12-03T03:25:32Z

[Term]
id: CL:0002486
name: strial intermediate cell
namespace: cell
def: "A melanocyte located between the epithelial marginal cell layer and the mesodermal basal cell layer within the intrastrial space; the predominant cellular component of the electrogenic machinery that generates an endocochlear potential (80-100 mV) ." []
is_a: CL:0002491 ! auditory epithelial cell
relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct
created_by: tmeehan
creation_date: 2010-12-03T03:29:15Z

[Term]
id: CL:0002490
name: organ of Corti supporting cell
namespace: cell
def: "A supporting cell of the organ of Corti." []
is_a: CL:0002315 ! supporting cell of cochlea
relationship: part_of UBERON:0002227 ! spiral organ of cochlea
created_by: tmeehan
creation_date: 2010-12-06T03:09:01Z

[Term]
id: CL:0002491
name: auditory epithelial cell
namespace: cell
def: "A specialized cell involved in auditory sensory perception." []
is_a: CL:0000098 ! sensory epithelial cell
created_by: tmeehan
creation_date: 2010-12-06T03:18:43Z

[Term]
id: CL:0002492
name: strial marginal cell
namespace: cell
def: "A polarized columnar cell that covesr the lateral surface of the cochlear duct, secretes potassium ions and forms a continuous sheet in contact with the endolymph; marginal cells form extensive interdigitations with the basal and intermediate cells in the normal adult stria." []
is_a: CL:0002491 ! auditory epithelial cell
created_by: tmeehan
creation_date: 2010-12-06T03:20:41Z

[Term]
id: CL:0002493
name: strial basal cell
namespace: cell
def: "A polarized cell that is juxtaposed to fibrocytes in the underlying spiral ligament. This cell type secretes potassium ions derived from fibrocytes through gap junctions." []
comment: Basal cells form a multi-layered epithelial barrier that separates the extracellular spaces of the stria vascularis and the spiral ligament[PMID:18353863]
is_a: CL:0002491 ! auditory epithelial cell
relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct
created_by: tmeehan
creation_date: 2010-12-06T03:26:53Z

[Term]
id: CL:0002550
name: fibroblast of the conjunctiva
namespace: cell
def: "A fibroblast that is part of the conjuctiva of the eye." []
relationship: part_of UBERON:0001811 ! conjunctiva
created_by: tmeehan
creation_date: 2011-02-28T05:03:44Z

[Term]
id: CL:0002565
name: iris pigment epithelial cell
namespace: cell
def: "A pigment cell located in the epithelium of the iris." []
relationship: part_of UBERON:0002506 ! iris epithelium
created_by: tmeehan
creation_date: 2011-03-01T05:28:52Z

[Term]
id: CL:0002585
name: retinal blood vessel endothelial cell
namespace: cell
def: "A blood vessel endothelial cell that is part of the retina." []
is_a: CL:0009004 ! retinal cell
relationship: part_of UBERON:0000966 ! retina
created_by: tmeehan
creation_date: 2011-03-06T03:28:27Z

[Term]
id: CL:0002586
name: retinal pigment epithelial cell
namespace: cell
def: "An epithelial cell of the retinal pigmented epithelium." []
xref: BTO:0004910
xref: FMA:75802
is_a: CL:0009004 ! retinal cell
relationship: part_of UBERON:0001782 ! pigmented layer of retina
created_by: tmeehan
creation_date: 2011-03-06T03:37:09Z

[Term]
id: CL:0002665
name: otic fibrocyte
namespace: cell
def: "A fibrocyte of the cochlea that has specialized structural and molecular adaptions." []
relationship: part_of UBERON:0006725 ! spiral ligament
created_by: tmeehan
creation_date: 2011-07-11T03:35:01Z

[Term]
id: CL:0002666
name: type 2 otic fibrocyte
namespace: cell
def: "An otic fibrocyte that underlies the spiral prominence and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." []
synonym: "type II otic fibrocyte" EXACT []
synonym: "type II spiral ligament fibrocyte" EXACT []
is_a: CL:0002665 ! otic fibrocyte
created_by: tmeehan
creation_date: 2011-07-11T03:40:40Z

[Term]
id: CL:0002667
name: type 5 otic fibrocyte
namespace: cell
def: "An otic fibrocyte that resides above the stria vasularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." []
synonym: "type V otic fibrocyte" EXACT []
synonym: "type V spiral ligament fibrocyte" EXACT []
is_a: CL:0002665 ! otic fibrocyte
created_by: tmeehan
creation_date: 2011-07-11T03:40:42Z

[Term]
id: CL:0002668
name: type 4 otic fibrocyte
namespace: cell
def: "An otic fibrocyte that is lateral to the basilar membrane and anchoris it to the lateral wall." []
synonym: "type IV otic fibrocyte" EXACT []
synonym: "type IV spiral ligament fibrocyte" EXACT []
is_a: CL:0002665 ! otic fibrocyte
created_by: tmeehan
creation_date: 2011-07-11T03:40:46Z

[Term]
id: CL:0002669
name: type 3 otic fibrocyte
namespace: cell
def: "An otic fibrocyte that lines the otic capsule." []
synonym: "type III otic fibrocyte" EXACT []
synonym: "type III spiral ligament fibrocyte" EXACT []
is_a: CL:0002665 ! otic fibrocyte
created_by: tmeehan
creation_date: 2011-07-11T03:40:50Z

[Term]
id: CL:0002670
name: type 1 otic fibrocyte
namespace: cell
def: "An otic fibrocyte that underlies the stria vascularis and is part of a mesenchymal gap junction network that regulates ionic homeostasis of the endolymph." []
synonym: "type I otic fibrocyte" EXACT []
synonym: "type I spiral ligament fibrocyte" EXACT []
is_a: CL:0002665 ! otic fibrocyte
created_by: tmeehan
creation_date: 2011-07-11T03:39:27Z

[Term]
id: CL:0005008
name: macular hair cell
namespace: cell
def: "An auditory hair cell located in the macula that is sensitive to auditory stimuli." []
is_a: CL:0000202 ! auditory hair cell
relationship: part_of UBERON:0000054 ! macula

[Term]
id: CL:0005014
name: auditory epithelial support cell
namespace: cell
def: "A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells." []
is_a: CL:0002491 ! auditory epithelial cell

[Term]
id: CL:0005015
name: inner phalangeal cell
namespace: cell
def: "An auditory epithelial support cell that surrounds the nerve fibers and synapses of the auditory inner hair cells." []
xref: FMA:79801
is_a: CL:0002165 ! phalangeal cell

[Term]
id: CL:0007017
name: Stiftchenzellen
def: "An epidermal cell with apical microvilli or a single apical projection have synaptic associations with nerve fibres in the epidermis." []
comment: Taxon specificity not yet fully known, but are known in anuran larvae but not in adults.
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell
created_by: haendel

[Term]
id: CL:0008027
name: rod bipolar cell (sensu Mus)
def: "A bipolar neuron found in the retina that is synapsed by rod photoreceptor cells.  These neurons have axons that arborize and synapse to targets in inner plexiform layers 4 and 5 and depolarize in response to light." []
is_a: CL:0000751 ! rod bipolar cell
created_by: dos
creation_date: 2017-06-29T11:05:22Z

[Term]
id: CL:0009001
name: compound eye retinal cell
def: "Any cell in the compound eye, a light sensing organ composed of ommatidia." []
xref: GOC:pr
xref: PMID:12021768

[Term]
id: CL:0009004
name: retinal cell
namespace: cell
def: "Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." []
xref: PMID:10702418
relationship: part_of UBERON:0005388 ! photoreceptor array

[Term]
id: CL:0010009
name: camera-type eye photoreceptor cell
synonym: "camera type eye photoreceptor cell" EXACT []
is_a: CL:0000287 ! eye photoreceptor cell
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: CL:0011004
name: lens fiber cell
def: "A vetebrate lens cell that is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye." []
synonym: "lens fibre cell" EXACT []
is_a: CL:0002222 ! vertebrate lens cell

[Term]
id: CL:0011104
name: interplexiform cell
def: "A type of interneuron in the retinal inner nuclear layer which\ncarries information from the inner plexiform layer and the outer\nplexiform layer." []
comment: Need to MIREOT retinal inner nuclear layer (part of)
is_a: CL:0009004 ! retinal cell
relationship: part_of UBERON:0001791 ! inner nuclear layer of retina

[Term]
id: CL:0011105
name: dopamanergic interplexiform cell
def: "A type of interneuron in the retinal inner nuclear layer which\ncarries information from the inner plexiform layer and the outer\nplexiform layer, using dopamine." []
comment: This type of cell is found in Danio rerio.
is_a: CL:0011104 ! interplexiform cell

[Term]
id: CL:0011106
name: GABAnergic interplexiform cell
def: "A type of interneuron in the retinal inner nuclear layer which\ncarries information from the inner plexiform layer and the outer\nplexiform layer using GABA." []
comment: This type of cell is found in many mammals.
is_a: CL:0011104 ! interplexiform cell

[Term]
id: CL:0011107
name: Muller cell
def: "Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer." []
synonym: "Muller glia" EXACT []
synonym: "Müller cell" EXACT []
is_a: CL:0009004 ! retinal cell
relationship: part_of UBERON:0000966 ! retina

[Term]
id: CL:1000050
name: lateral line nerve glial cell
relationship: part_of UBERON:0008906 ! lateral line nerve

[Term]
id: CL:1000082
name: stretch receptor cell
namespace: cell
is_a: CL:0000006 ! neuronal receptor cell

[Term]
id: CL:1000191
name: pillar cell
namespace: cell
def: "A rod-like cell in the inner ear, having their heads joined and their bases on the basilar membrane widely separated so as to form a spiral tunnel known as the tunnel of Corti." []
synonym: "cochlear pillar cell" RELATED []
synonym: "pillar cell of cochlea" EXACT []
synonym: "pillar cell of corti" EXACT []
synonym: "rod cell of Corti" EXACT []
xref: FMA:75722
is_a: CL:0002490 ! organ of Corti supporting cell

[Term]
id: CL:1000236
name: posterior lateral line nerve glial cell
is_a: CL:1000050 ! lateral line nerve glial cell
relationship: part_of UBERON:2000175 ! posterior lateral line nerve

[Term]
id: CL:1000239
name: anterior lateral line nerve glial cell
is_a: CL:1000050 ! lateral line nerve glial cell
relationship: part_of UBERON:2000425 ! anterior lateral line nerve

[Term]
id: CL:1000378
name: type 1 vestibular sensory cell of stato-acoustic epithelium
namespace: cell
def: "A type I vestibular sensory cell that is part of the stato-acoustic epithelium." []
xref: FMA:263186
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell

[Term]
id: CL:1000379
name: type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth
namespace: cell
def: "A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." []
xref: FMA:263188
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell
relationship: part_of UBERON:0003241 ! epithelium of utricle

[Term]
id: CL:1000380
name: type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth
namespace: cell
def: "A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." []
xref: FMA:263190
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell
relationship: part_of UBERON:0002212 ! macula of saccule of membranous labyrinth
relationship: part_of UBERON:0003242 ! epithelium of saccule

[Term]
id: CL:1000381
name: type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth
namespace: cell
def: "A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." []
xref: FMA:263192
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell
relationship: part_of UBERON:0006935 ! crista ampullaris neuroepithelium

[Term]
id: CL:1000382
name: type 2 vestibular sensory cell of stato-acoustic epithelium
namespace: cell
def: "A type II vestibular sensory cell that is part of the stato-acoustic epithelium." []
xref: FMA:263194
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell

[Term]
id: CL:1000383
name: type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth
namespace: cell
def: "A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." []
xref: FMA:263196
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell
relationship: part_of UBERON:0003241 ! epithelium of utricle

[Term]
id: CL:1000384
name: type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth
namespace: cell
def: "A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." []
xref: FMA:263198
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell
relationship: part_of UBERON:0002212 ! macula of saccule of membranous labyrinth
relationship: part_of UBERON:0003242 ! epithelium of saccule

[Term]
id: CL:1000385
name: type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth
namespace: cell
def: "A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." []
xref: FMA:263200
is_a: CL:0000006 ! neuronal receptor cell
is_a: CL:0000098 ! sensory epithelial cell
relationship: part_of UBERON:0006935 ! crista ampullaris neuroepithelium

[Term]
id: CL:1000391
name: melanocyte of eyelid
namespace: cell
def: "A melanocyte that is part of the eyelid." []
synonym: "eyelid melanocyte" EXACT []
synonym: "sebaceous gland of wolff" EXACT []
xref: FMA:59175
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: CL:1000432
name: conjunctival epithelial cell
namespace: cell
def: "An epithelial cell that is part of the conjunctiva." []
synonym: "epithelial cell of conjunctiva" EXACT []
xref: FMA:70552
relationship: part_of UBERON:0001811 ! conjunctiva

[Term]
id: CL:1000433
name: epithelial cell of lacrimal canaliculus
namespace: cell
def: "An epithelial cell that is part of the lacrimal canaliculus." []
xref: FMA:70553
relationship: part_of UBERON:0001770 ! lacrimal canaliculus

[Term]
id: CL:1000434
name: epithelial cell of external acoustic meatus
namespace: cell
def: "An epithelial cell that is part of the external acoustic meatus." []
xref: FMA:70555
relationship: part_of UBERON:0001352 ! external acoustic meatus

[Term]
id: CL:1000435
name: epithelial cell of lacrimal duct
namespace: cell
def: "An epithelial cell that is part of the lacrimal duct." []
xref: FMA:70559
relationship: part_of UBERON:0001850 ! lacrimal drainage system

[Term]
id: CL:1000436
name: epithelial cell of lacrimal sac
namespace: cell
def: "An epithelial cell that is part of the lacrimal sac." []
xref: FMA:70560
relationship: part_of UBERON:0001351 ! lacrimal sac

[Term]
id: CL:1000437
name: epithelial cell of nasolacrimal duct
namespace: cell
def: "An epithelial cell that is part of the nasolacrimal duct." []
xref: FMA:70561
is_a: CL:1000435 ! epithelial cell of lacrimal duct
relationship: part_of UBERON:0002392 ! nasolacrimal duct

[Term]
id: CL:1000443
name: ciliary muscle cell
namespace: cell
def: "A smooth muscle cell that is part of the ciliary body." []
synonym: "smooth muscle cell of ciliary body" EXACT []
xref: FMA:70610
relationship: part_of UBERON:0001775 ! ciliary body

[Term]
id: CL:1000444
name: mesothelial cell of anterior chamber of eye
namespace: cell
def: "A mesothelial cell that is part of the anterior chamber of eyeball." []
xref: FMA:70615
relationship: part_of UBERON:0001766 ! anterior chamber of eyeball

[Term]
id: CL:1000445
name: myoepithelial cell of dilator pupillae
namespace: cell
def: "A myoepithelial cell that is part of the dilatator pupillae." []
xref: FMA:70619
relationship: part_of UBERON:0001608 ! dilatator pupillae

[Term]
id: CL:1001561
name: vomeronasal sensory neuron
namespace: cl
def: "Chemosensitive cells that innervate the vomernasal organ epithelium and are responsible for receiving and transmitting pheromone signals." []
is_a: CL:0000006 ! neuronal receptor cell
relationship: part_of UBERON:0002255 ! vomeronasal organ

[Term]
id: CL:2000019
name: compound eye photoreceptor cell
namespace: cell
def: "Any photoreceptor cell that is part of a compound eye." []
is_a: CL:0000287 ! eye photoreceptor cell
relationship: part_of UBERON:0000018 ! compound eye
created_by: TermGenie
creation_date: 2014-06-24T23:16:45Z

[Term]
id: CL:2000034
name: anterior lateral line neuromast hair cell
namespace: cell
def: "Any neuromast hair cell that is part of a anterior lateral line." []
is_a: CL:0000856 ! neuromast hair cell
relationship: part_of UBERON:2001470 ! anterior lateral line
created_by: TermGenie
creation_date: 2014-06-25T03:44:37Z

[Term]
id: CL:2000035
name: anterior lateral line neuromast mantle cell
namespace: cell
def: "Any neuromast mantle cell that is part of a anterior lateral line." []
is_a: CL:0000851 ! neuromast mantle cell
relationship: part_of UBERON:2001470 ! anterior lateral line
created_by: TermGenie
creation_date: 2014-06-25T03:44:44Z

[Term]
id: CL:2000036
name: anterior lateral line neuromast support cell
namespace: cell
def: "Any neuromast support cell that is part of a anterior lateral line." []
is_a: CL:0000852 ! neuromast support cell
relationship: part_of UBERON:2001470 ! anterior lateral line
created_by: TermGenie
creation_date: 2014-06-25T03:44:51Z

[Term]
id: CL:2000037
name: posterior lateral line neuromast hair cell
namespace: cell
def: "Any neuromast hair cell that is part of a posterior lateral line." []
is_a: CL:0000856 ! neuromast hair cell
relationship: part_of UBERON:0006334 ! posterior lateral line
created_by: TermGenie
creation_date: 2014-06-25T03:44:57Z

[Term]
id: CL:2000038
name: posterior lateral line neuromast mantle cell
namespace: cell
def: "Any neuromast mantle cell that is part of a posterior lateral line." []
is_a: CL:0000851 ! neuromast mantle cell
relationship: part_of UBERON:0006334 ! posterior lateral line
created_by: TermGenie
creation_date: 2014-06-25T03:45:04Z

[Term]
id: CL:2000039
name: posterior lateral line neuromast support cell
namespace: cell
def: "Any neuromast support cell that is part of a posterior lateral line." []
is_a: CL:0000852 ! neuromast support cell
relationship: part_of UBERON:0006334 ! posterior lateral line
created_by: TermGenie
creation_date: 2014-06-25T03:45:11Z

[Term]
id: CL:2000070
name: optic choroid fibroblast
namespace: cell
def: "Any fibroblast that is part of a optic choroid." []
comment: http://www.sciencellonline.com/site/productInformation.php?keyword=6620
relationship: part_of UBERON:0001776 ! optic choroid
created_by: TermGenie
creation_date: 2014-10-07T18:50:43Z

[Term]
id: CL:2000084
name: conjunctiva goblet cell
namespace: cell
def: "Any goblet cell that is part of a conjunctiva." []
is_a: CL:1000432 ! conjunctival epithelial cell
created_by: TermGenie
creation_date: 2014-12-02T19:28:38Z

[Term]
id: CL:2000094
name: nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa
namespace: cell
def: "Any epithelial cell of viscerocranial mucosa that is part of a nasal cavity respiratory epithelium." []
relationship: part_of UBERON:0005385 ! nasal cavity respiratory epithelium
created_by: TermGenie
creation_date: 2015-03-31T22:25:17Z

[Term]
id: UBERON:0000003
name: naris
namespace: uberon
def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [http://orcid.org/0000-0001-9114-8737]
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0000311
xref: EHDAA2:0001225
xref: EHDAA:9083
xref: EMAPA:17847
xref: galen:Naris
xref: MA:0000282
xref: SCTID:272650008
xref: VHOG:0000663
relationship: part_of UBERON:0005725 ! olfactory system
property_value: UBPROP:0000001 "One of paired external openings of the nasal chamber.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000311", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000003 "Naris refer to the external and interior naris (choana) of tetrapods, and to anterior and posterior naris of zebrafish. It seems now accepted that the structure is homologous: The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000663", ontology="VHOG", source="DOI:10.1038/nature02843 Zhu M, Ahlberg PE, The origin of the internal nostril in tetrapodes. Nature (2004)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity" xsd:string
property_value: UBPROP:0000012 "we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0000004
name: nose
namespace: uberon
def: "The olfactory organ of vertebrates, consisting of nares, olfactory epithelia and the structures and skeletal framework of the nasal cavity." [UBERON:cjm]
subset: efo_slim
subset: major_organ
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "nasal sac" EXACT SENSU [ZFA:0000047]
synonym: "nasus" RELATED LATIN [Wikipedia:Nose]
synonym: "nose" EXACT HUMAN_PREFERRED [MA:0000281]
synonym: "olfactory apparatus" RELATED [UBERON:cjm]
synonym: "peripheral olfactory organ" EXACT [ZFA:0000047]
synonym: "proboscis" RELATED []
xref: BTO:0000840
xref: CALOHA:TS-2037
xref: EHDAA2:0001274
xref: EHDAA:1502
xref: EMAPA:16542
xref: EV:0100037
xref: EV:0100370
xref: FMA:46472
xref: GAID:77
xref: galen:Nose
xref: MA:0000281
xref: MAT:0000139
xref: MESH:D009666
xref: MIAA:0000139
xref: NCIT:C12756
xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA
xref: SCTID:181195007
xref: TAO:0000047
xref: UMLS:C0028429 {source="ncithesaurus:Nose"}
xref: Wikipedia:Nose
xref: ZFA:0000047
is_a: UBERON:0002268 ! olfactory organ
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d0/Canine-nose.jpg xsd:anyURI
property_value: UBPROP:0000001 "a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)[Wikipedia:Nose]." xsd:string {source="Wikipedia:Nose"}
property_value: UBPROP:0000001 "Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired[ZFA:0000047]." xsd:string {source="ZFA:0000047"}
property_value: UBPROP:0000001 "the organ that is specialized for smell and is part of the respiratory system" xsd:string {source="MP:0002233"}
property_value: UBPROP:0000008 "the structure of the nose varies across vertebrates. In tetrapods the nose is part of the respiratory system.[PMID:25312359]" xsd:string

[Term]
id: UBERON:0000005
name: chemosensory organ
namespace: uberon
subset: functional_classification
subset: uberon_slim
synonym: "chemosensory sensory organ" EXACT [FBbt:00005157]
xref: FBbt:00005157
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0005726 ! chemosensory system

[Term]
id: UBERON:0000018
name: compound eye
namespace: uberon
def: "A light sensing organ composed of ommatidia" [FB:gg, Wikipedia:Compound_eye]
subset: organ_slim
subset: uberon_slim
synonym: "adult compound eye" RELATED []
synonym: "faceted eye" RELATED []
synonym: "Facettenauge" RELATED [BTO:0001921]
synonym: "insect eye" RELATED []
synonym: "Komplexauge" RELATED [BTO:0001921]
synonym: "zusammengesetztes Auge" RELATED [BTO:0001921]
xref: BTO:0001921
xref: FBbt:00004508
xref: HAO:0000217
xref: TGMA:0000024
xref: Wikipedia:Compound_eye
is_a: UBERON:0015165 ! multi-unit eye
property_value: seeAlso https://github.com/obophenotype/uberon/issues/457 xsd:anyURI
property_value: UBPROP:0000008 "The term compound eye is sometimes used for the multi-unit eyes of annelids, bivalves, echinoderms. We follow Richter et al and restrict this class to the arthropod structure for these structures" xsd:string {source="PMID:21062451"}

[Term]
id: UBERON:0000019
name: camera-type eye
namespace: uberon
def: "An organ of sight that includes the camera-type eyeball and supporting structures such as the lacrimal apparatus, the conjunctiva, the eyelid." [GO:0043010, https://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "camera-type eye plus associated structures" RELATED []
synonym: "eye" BROAD [FMA:54448]
synonym: "eyes" RELATED PLURAL [TAO:0000107]
synonym: "orbital part of face" RELATED [FMA:54448]
synonym: "orbital region" RELATED [FMA:54448]
synonym: "regio orbitalis" EXACT LATIN [FMA:54448, FMA:TA]
synonym: "vertebrate eye" NARROW []
xref: AAO:0010340
xref: BIRNLEX:1169
xref: BTO:0004688
xref: EHDAA2:0000484
xref: EHDAA:936
xref: EMAPA:16198
xref: FMA:54448
xref: MA:0000261
xref: NCIT:C12401
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
xref: SCTID:181143004
xref: TAO:0000107
xref: UMLS:C0015392 {source="BIRNLEX:1169"}
xref: UMLS:C0015392 {source="ncithesaurus:Eye"}
xref: UMLS:C1280202 {source="BIRNLEX:1169"}
xref: VHOG:0000275
xref: XAO:0000179
xref: ZFA:0000107
is_a: UBERON:0000047 ! simple eye
property_value: UBPROP:0000001 "A cavitated compound organ that transduces light waves into neural signals.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000107", ontology="TAO", source="TAO:wd"}
property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000275", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ), as well as other structures, and the orbit of skull. MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0000020
name: sense organ
namespace: uberon
def: "An organ that is capable of transducing sensory stimulus to the nervous system." [https://github.com/obophenotype/uberon/issues/549, https://orcid.org/0000-0002-6601-2165]
subset: uberon_slim
synonym: "organ of sense organ system" EXACT [OBOL:accepted]
synonym: "organ of sensory organ system" EXACT [OBOL:accepted]
synonym: "organ of sensory system" EXACT [OBOL:accepted]
synonym: "sense organ system organ" EXACT [OBOL:automatic]
synonym: "sensillum" NARROW [WBbt:0006929]
synonym: "sensor" RELATED []
synonym: "sensory organ" EXACT []
synonym: "sensory organ system organ" EXACT [OBOL:automatic]
synonym: "sensory system organ" EXACT [OBOL:accepted]
synonym: "Sinnesorgan" RELATED [BTO:0000202]
xref: AEO:0000094
xref: BSA:0000121
xref: BTO:0000202
xref: CALOHA:TS-2043
xref: EHDAA2:0001824
xref: EHDAA:500
xref: EMAPA:35955
xref: FBbt:00005155
xref: GAID:63
xref: HAO:0000930
xref: MA:0000017
xref: MESH:D012679
xref: NCIT:C33224
xref: SCTID:244485009
xref: UMLS:C0935626 {source="ncithesaurus:Organ_of_the_Special_Sense"}
xref: VHOG:0001407
xref: WBbt:0006929
relationship: part_of UBERON:0001032 ! sensory system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png xsd:anyURI
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall

[Term]
id: UBERON:0000046
name: stemma
namespace: uberon
def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma]
subset: uberon_slim
synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes]
xref: Wikipedia:Stemma
is_a: UBERON:0000047 ! simple eye
property_value: RO:0002161 NCBITaxon:7742

[Term]
id: UBERON:0000047
name: simple eye
namespace: uberon
def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
subset: grouping_class
subset: uberon_slim
xref: TGMA:0000729
xref: Wikipedia:Eye#Simple_eyes
is_a: UBERON:0000970 ! eye

[Term]
id: UBERON:0000048
name: pinhole eye
namespace: uberon
def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye]
subset: grouping_class
subset: uberon_slim
xref: Wikipedia:Pinhole_eye
is_a: UBERON:0000047 ! simple eye

[Term]
id: UBERON:0000049
name: spherical lensed eye
namespace: uberon
def: "simple eye that consists of a lens of one refractive index" [Wikipedia:Eye#Spherical_lensed_eye]
subset: grouping_class
is_a: UBERON:0000047 ! simple eye

[Term]
id: UBERON:0000050
name: simple eye with multiple lenses
namespace: uberon
def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [Wikipedia:Eye#Multiple_lenses]
subset: grouping_class
subset: uberon_slim
xref: Wikipedia:Eye#Multiple_lenses
is_a: UBERON:0000047 ! simple eye
property_value: RO:0002161 NCBITaxon:7742

[Term]
id: UBERON:0000053
name: macula lutea
namespace: uberon
def: "An oval area in the retina, usually located temporal to the posterior pole of the eye and slightly below the level of the optic disk. It is characterized by the presence of a yellow pigment diffusely permeating the inner layers, contains the fovea centralis in its center, and provides the best phototopic visual acuity. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)" [MESH:A09.371.729.522]
subset: pheno_slim
subset: uberon_slim
synonym: "macula" RELATED []
synonym: "macula flava retinae" RELATED [BTO:0003015]
synonym: "macula retinae" RELATED [BTO:0003015]
synonym: "maculae" RELATED []
xref: BIRNLEX:2540
xref: BTO:0003015
xref: EMAPA:36516
xref: EV:0100349
xref: FMA:58637
xref: GAID:909
xref: MA:0001306
xref: MESH:D008266
xref: NCIT:C26464
xref: NCIT:C33044
xref: SCTID:362517001
xref: UMLS:C0450295 {source="ncithesaurus:Macula_Lutea"}
xref: UMLS:C0450295 {source="BIRNLEX:2540"}
xref: UMLS:C1284755 {source="BIRNLEX:2540"}
xref: Wikipedia:Macula_of_retina
relationship: part_of UBERON:0000966 ! retina
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png xsd:anyURI

[Term]
id: UBERON:0000054
name: macula
namespace: uberon
def: "Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified]." [MESH:A09.246.631.909.625.125]
subset: pheno_slim
subset: uberon_slim
synonym: "acoustic macula" RELATED [MESH:A09.246.631.909.625.125]
synonym: "acoustic maculae" RELATED PLURAL [MESH:A09.246.631.909.625.125]
synonym: "macula" EXACT []
synonym: "maculae" EXACT PLURAL []
synonym: "sensory macula" EXACT [ZFA:0000386]
synonym: "sensory patch" EXACT [ZFA:0000386]
xref: GAID:777
xref: MESH:D008267
xref: TAO:0000386
xref: ZFA:0000386
relationship: part_of UBERON:0001846 ! internal ear
property_value: IAO:0000232 "this refers to the inner ear structure, not the macula of the retina. We follow ZFA in including a grouping class for the macula of utricle and sacule" xsd:string
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000386", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000007 "macular" xsd:string

[Term]
id: UBERON:0000061
name: anatomical structure
namespace: uberon
def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003]
subset: upper_level
synonym: "biological structure" EXACT []
synonym: "connected biological structure" EXACT [CARO:0000003]
xref: AAO:0010825
xref: AEO:0000003
xref: BILA:0000003
xref: CARO:0000003
xref: EHDAA2:0003003
xref: EMAPA:0
xref: FBbt:00007001
xref: FMA:305751
xref: FMA:67135
xref: GAID:781
xref: HAO:0000003
xref: http://dbpedia.org/ontology/AnatomicalStructure
xref: MA:0003000
xref: MESH:D000825
xref: SCTID:362889002
xref: TAO:0000037
xref: TGMA:0001823
xref: VHOG:0001759
xref: XAO:0003000
xref: ZFA:0000037
is_a: UBERON:0000465 ! material anatomical entity

[Term]
id: UBERON:0000207
name: compound eye corneal lens
namespace: uberon
def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058]
synonym: "acellular lens" RELATED []
xref: FBbt:00004199
xref: TADS:0000304
is_a: UBERON:0005389 ! transparent eye structure
relationship: part_of UBERON:0000018 ! compound eye
created_by: cjm
creation_date: 2009-04-18T01:35:32Z

[Term]
id: UBERON:0000389
name: lens cortex
namespace: uberon
def: "Tissue that surrounds the lens nucleus" [http://www.thefreedictionary.com/lens+cortex]
synonym: "cortex of lens" EXACT [FMA:58970]
xref: BTO:0001632
xref: CALOHA:TS-0542
xref: FMA:58970
xref: MESH:A09.371.509.225
xref: SCTID:280626006
relationship: part_of UBERON:0000965 ! lens of camera-type eye

[Term]
id: UBERON:0000390
name: lens nucleus
namespace: uberon
def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633]
synonym: "nucleus of lens" EXACT [FMA:58971]
xref: BTO:0001633
xref: FMA:58971
xref: MESH:A09.371.509.670
xref: SCTID:280628007
relationship: part_of UBERON:0000965 ! lens of camera-type eye

[Term]
id: UBERON:0000395
name: cochlear ganglion
namespace: uberon
def: "The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, MP:0002855]
subset: pheno_slim
synonym: "cochlear part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "Corti's ganglion" EXACT [FMA:53445]
synonym: "ganglion cochlearis" RELATED [BTO:0001688]
synonym: "ganglion of Corti" EXACT [FMA:53445]
synonym: "ganglion spirale" RELATED LATIN [Wikipedia:Spiral_ganglion]
synonym: "ganglion spirale cochleae" RELATED [BTO:0001688]
synonym: "spiral ganglion" EXACT [FMA:53445]
synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688]
synonym: "vestibulocochlear ganglion cochlear component" RELATED [EMAPA:17572]
synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085]
xref: BAMS:GcVIII
xref: BTO:0001688
xref: EHDAA2:0002198
xref: EMAPA:17572
xref: FMA:53445
xref: GAID:722
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1405
xref: MA:0001085
xref: MESH:D013136
xref: SCTID:368955007
xref: VHOG:0001183
xref: Wikipedia:Spiral_ganglion
relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion
relationship: part_of UBERON:0016490 ! auditory system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png xsd:anyURI
property_value: IAO:0000116 "in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems" xsd:string

[Term]
id: UBERON:0000396
name: vallate papilla
namespace: uberon
alt_id: UBERON:0002927
def: "Any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue" [MGI:smb, MP:0006258]
subset: pheno_slim
synonym: "circumvallate papilla" EXACT [MA:0001594]
synonym: "circumvallate papilla of tongue" EXACT [FMA:54822]
synonym: "circumvallate papillae" RELATED PLURAL []
synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA]
synonym: "vallate papilla of tongue" EXACT []
xref: BIRNLEX:4106_2
xref: BTO:0001705
xref: EMAPA:18271
xref: FMA:54822
xref: MA:0001594
xref: NCIT:C32322
xref: SCTID:69517000
xref: UMLS:C0226965 {source="BIRNLEX:4106_2"}
xref: UMLS:C1182961 {source="BIRNLEX:4106_2"}
xref: UMLS:C1182961 {source="ncithesaurus:Circumvallate_Papilla"}
xref: UMLS:C1267555 {source="BIRNLEX:4106_2"}
xref: Wikipedia:Vallate_papilla
is_a: UBERON:0014389 ! gustatory papilla of tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1015.png xsd:anyURI
property_value: UBPROP:0000001 "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongu[BTO:0001705, Wikipedia:Vallate_papilla]e" xsd:string {source="BTO:0001705, Wikipedia:Vallate_papilla"}

[Term]
id: UBERON:0000402
name: nasal vestibule
namespace: uberon
def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule]
synonym: "vestibular part of nasal cavity" EXACT [FMA:59644]
synonym: "vestibulum nasale" RELATED [BTO:0001761]
synonym: "vestibulum nasi" RELATED [BTO:0001761]
synonym: "vestibulum nasi" RELATED LATIN [Wikipedia:Nasal_vestibule]
xref: BTO:0001761
xref: CALOHA:TS-0660
xref: FMA:59644
xref: SCTID:278940000
xref: Wikipedia:Nasal_vestibule
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001707 ! nasal cavity
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png xsd:anyURI

[Term]
id: UBERON:0000465
name: material anatomical entity
namespace: uberon
def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737]
subset: upper_level
xref: AAO:0010264
xref: AEO:0000006
xref: BILA:0000006
xref: CARO:0000006
xref: EHDAA2:0003006
xref: FBbt:00007016
xref: FMA:67165
xref: HAO:0000006
xref: TAO:0001836
xref: TGMA:0001826
xref: VHOG:0001721
is_a: BFO:0000040 ! material entity
is_a: UBERON:0001062 ! anatomical entity

[Term]
id: UBERON:0000467
name: anatomical system
namespace: uberon
def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011]
subset: pheno_slim
subset: uberon_slim
subset: upper_level
synonym: "anatomical systems" RELATED PLURAL [ZFA:0001439]
synonym: "body system" EXACT [BIRNLEX:14]
synonym: "connected anatomical system" EXACT [CARO:0000011]
synonym: "organ system" EXACT []
synonym: "system" BROAD [GO:0048731]
xref: AAO:0000007
xref: AEO:0000011
xref: BILA:0000011
xref: BIRNLEX:14
xref: BSA:0000049
xref: CALOHA:TS-2088
xref: CARO:0000011
xref: EHDAA2:0003011
xref: EHDAA:392
xref: EMAPA:16103
xref: EV:0100000
xref: FBbt:00004856
xref: FMA:7149
xref: galen:AnatomicalSystem
xref: HAO:0000011
xref: MA:0000003
xref: NCIT:C12919
xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ
xref: SCTID:278195005
xref: TAO:0001439
xref: TGMA:0001831
xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"}
xref: VHOG:0001725
xref: WBbt:0005746
xref: WBbt:0005763
xref: Wikipedia:Organ_system
xref: XAO:0003002
xref: ZFA:0001439
is_a: UBERON:0000061 ! anatomical structure
property_value: seeAlso EHDAA2:0001330

[Term]
id: UBERON:0000941
name: cranial nerve II
namespace: uberon
def: "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, ISBN:0471888893]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "02 optic nerve" EXACT [AAO:0010345]
synonym: "2n" BROAD ABBREVIATION [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource]
synonym: "CN-II" RELATED [ZFA:0000435]
synonym: "cranial II" EXACT []
synonym: "nerve II" RELATED [NeuroNames:289]
synonym: "nervus opticus" EXACT LATIN []
synonym: "nervus opticus [II]" EXACT LATIN [FMA:50863, FMA:TA]
synonym: "optic" RELATED [TAO:0000435]
synonym: "optic II" EXACT [EHDAA2:0001313]
synonym: "optic II nerve" EXACT [EHDAA2:0001313]
synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435]
synonym: "optic nerve [II]" EXACT []
synonym: "second cranial nerve" EXACT []
xref: AAO:0010345
xref: BAMS:2n
xref: BAMS:IIn
xref: BAMS:nII
xref: BIRNLEX:1640
xref: CALOHA:TS-0713
xref: DHBA:15544
xref: EFO:0004258
xref: EHDAA2:0001313
xref: EHDAA:6788
xref: EMAPA:17575
xref: FMA:50863
xref: GAID:831
xref: HBA:9307
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=289 {source="BIRNLEX:1640"}
xref: MA:0001097
xref: MBA:848
xref: MESH:D009900
xref: NCIT:C12761
xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
xref: SCTID:180938001
xref: TAO:0000435
xref: UMLS:C0029130 {source="BIRNLEX:1640"}
xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"}
xref: VHOG:0000543
xref: Wikipedia:Optic_nerve
xref: XAO:0000188
xref: ZFA:0000435
relationship: part_of UBERON:0002104 ! visual system
property_value: IAO:0000116 "Do not classify under 'cranial nerve', as this is not a true nerve - should be classified as evaginated sensory afferent[ISBN:0471888893]" xsd:string
property_value: UBPROP:0000001 "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000435", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000001 "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010345", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup (reference 1); The (optic) stalk persists as the optic nerve (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000543", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429, http://medical-dictionary.thefreedictionary.com/optic+stalk", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "(relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0000963
name: head sensillum
namespace: uberon
xref: FBbt:00004114
xref: MAT:0000204
xref: MIAA:0000204
is_a: UBERON:0002536 ! arthropod sensillum
property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string

[Term]
id: UBERON:0000964
name: cornea
namespace: uberon
def: "the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure" [ISBN:0-683-40008-8, MESH:A09.371.060.217, MP:0001312]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "cornea of camera-type eye" EXACT [GO:0061303]
synonym: "corneas" RELATED PLURAL [ZFA:0000640]
synonym: "tunica cornea" RELATED []
xref: AAO:0010344
xref: BTO:0000286
xref: CALOHA:TS-0171
xref: EFO:0000377
xref: EHDAA2:0000316
xref: EHDAA:10199
xref: EMAPA:17161
xref: EV:0100341
xref: FMA:58238
xref: GAID:892
xref: MA:0000266
xref: MESH:D003315
xref: NCIT:C12342
xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA
xref: SCTID:181162001
xref: TAO:0000640
xref: UMLS:C0010031 {source="ncithesaurus:Cornea"}
xref: VHOG:0000164
xref: Wikipedia:Cornea
xref: XAO:0000180
xref: ZFA:0000640
relationship: part_of UBERON:0001801 {source="MA"} ! anterior segment of eyeball
relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region
relationship: part_of UBERON:0012430 {source="FMA-isa"} ! tunica fibrosa of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: UBPROP:0000007 "corneal" xsd:string
property_value: UBPROP:0000008 "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals. In fish, and aquatic vertebrates in general, the cornea plays no role in focusing light, since it has virtually the same refractive index as water" xsd:string

[Term]
id: UBERON:0000965
name: lens of camera-type eye
namespace: uberon
def: "Transparent part of camera-type eye that helps to refract light to be focused on the retina." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lens_(anatomy)]
comment: The lens is avascular and nourished by diffusion from the aqueous and vitreous
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "camera-type eye lens" EXACT [GO:0002088]
synonym: "crystalline lens" RELATED [BTO:0000723]
synonym: "eye lens" EXACT SENSU []
synonym: "lens" EXACT SENSU []
synonym: "lens crystallina" EXACT [Wikipedia:Lens_(anatomy)]
synonym: "lenses" RELATED PLURAL [ZFA:0000035]
synonym: "ocular lens" RELATED [BTO:0000723]
xref: AAO:0010348
xref: BTO:0000723
xref: CALOHA:TS-0545
xref: EHDAA:9057
xref: EMAPA:17838
xref: EV:0100343
xref: FMA:58241
xref: MA:0000275
xref: MAT:0000141
xref: MESH:A09.371.509
xref: MIAA:0000141
xref: NCIT:C12743
xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0000975
xref: SCTID:181169005
xref: TAO:0000035
xref: UMLS:C0023317 {source="ncithesaurus:Crystalline_Lens"}
xref: VHOG:0000169
xref: Wikipedia:Lens_(anatomy)
xref: XAO:0000008
xref: ZFA:0000035
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0005389 ! transparent eye structure
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000169", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "This class excludes compound eye corneal lenses." xsd:string

[Term]
id: UBERON:0000966
name: retina
namespace: uberon
def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator]
comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "inner layer of eyeball" EXACT []
synonym: "Netzhaut" RELATED [BTO:0001175]
synonym: "retina of camera-type eye" EXACT [GO:0060041]
synonym: "retinas" RELATED PLURAL [ZFA:0000152]
synonym: "tunica interna of eyeball" EXACT []
xref: AAO:0010352
xref: BAMS:R
xref: BIRNLEX:1153
xref: BTO:0001175
xref: CALOHA:TS-0865
xref: EFO:0000832
xref: EHDAA2:0001627
xref: EHDAA:4757
xref: EMAPA:17168
xref: EV:0100348
xref: FMA:58301
xref: GAID:755
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1862
xref: MA:0000276
xref: MAT:0000142
xref: MBA:304325711
xref: MESH:D012160
xref: MIAA:0000142
xref: NCIT:C12343
xref: NIFSTD_RETIRED:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: SCTID:181171005
xref: TAO:0000152
xref: UMLS:C0035298 {source="BIRNLEX:1153"}
xref: UMLS:C0035298 {source="ncithesaurus:Retina"}
xref: UMLS:C1278894 {source="BIRNLEX:1153"}
xref: VHOG:0000229
xref: Wikipedia:Retina
xref: XAO:0000009
xref: ZFA:0000152
is_a: UBERON:0005388 ! photoreceptor array
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
relationship: part_of UBERON:0019207 ! chorioretinal region
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png xsd:anyURI
property_value: RO:0002161 NCBITaxon:6656
property_value: UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000152", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000229", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "retinal" xsd:string

[Term]
id: UBERON:0000970
name: eye
namespace: uberon
def: "An organ that detects light." [https://orcid.org/0000-0002-6601-2165]
subset: efo_slim
subset: functional_classification
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "light-detecting organ" RELATED []
synonym: "visual apparatus" RELATED [EV:0100336]
xref: BILA:0000017
xref: BTO:0000439
xref: CALOHA:TS-0309
xref: EFO:0000827
xref: EV:0100336
xref: FBbt:00005162
xref: GAID:69
xref: MAT:0000140
xref: MESH:D005123
xref: MIAA:0000140
xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
xref: Wikipedia:Eye
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0002104 ! visual system
property_value: IAO:0000232 "This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each)" xsd:string
property_value: UBPROP:0000007 "ocular" xsd:string
property_value: UBPROP:0000007 "optic" xsd:string
property_value: UBPROP:0000010 "Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva," xsd:string

[Term]
id: UBERON:0000971
name: ommatidium
namespace: uberon
def: "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells." [PMID:21062451]
subset: uberon_slim
synonym: "omatidia" RELATED PLURAL []
synonym: "omatidium" EXACT []
xref: BTO:0001922
xref: FBbt:00004510
xref: HAO:0000666
xref: MAT:0000143
xref: MIAA:0000143
xref: Wikipedia:Ommatidium
is_a: UBERON:0000970 {source="PMID:21062451"} ! eye
is_a: UBERON:0002536 ! arthropod sensillum
relationship: part_of UBERON:0000018 ! compound eye
property_value: UBPROP:0000007 "ommatidial" xsd:string

[Term]
id: UBERON:0001032
name: sensory system
namespace: uberon
def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system]
subset: efo_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "organa sensuum" EXACT LATIN [FMA:75259, FMA:TA]
synonym: "organa sensuum" RELATED LATIN [Wikipedia:Sensory_system]
synonym: "sense organ subsystem" EXACT []
synonym: "sense organs" EXACT [FMA:75259]
synonym: "sense organs set" EXACT [FMA:75259]
synonym: "sensory organ system" RELATED []
synonym: "sensory subsystem" EXACT []
synonym: "sensory systems" EXACT PLURAL [TAO:0000282]
synonym: "set of sense organs" RELATED [FMA:75259]
xref: AAO:0000555
xref: BAMS:SEN
xref: BILA:0000099
xref: EFO:0000805
xref: EHDAA2:0003094
xref: EMAPA:16192
xref: FBbt:00007692
xref: FMA:75259
xref: MA:0002442
xref: MAT:0000031
xref: MIAA:0000031
xref: NLXANAT:090816
xref: TAO:0000282
xref: VHOG:0001674
xref: Wikipedia:Sensory_system
xref: XAO:0003194
xref: ZFA:0000282
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0004456 ! entire sense organ system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png xsd:anyURI
property_value: UBPROP:0000003 "An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001674", ontology="VHOG", source="DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string

[Term]
id: UBERON:0001038
name: chordotonal organ
namespace: uberon
def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament." [FB:FBrf0056378, Wikipedia:Chordotonal_organ]
comment: To be ceded to Arthropod anatomy ontology
subset: efo_slim
subset: organ_slim
subset: uberon_slim
synonym: "ch" RELATED []
synonym: "scolopophorous organ" RELATED []
xref: EFO:0000940
xref: FBbt:00005215
xref: MAT:0000209
xref: MIAA:0000209
xref: Wikipedia:Chordotonal_organ
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0001062
name: anatomical entity
namespace: uberon
def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737]
subset: upper_level
xref: AAO:0010841
xref: AEO:0000000
xref: BILA:0000000
xref: BIRNLEX:6
xref: CARO:0000000
xref: EHDAA2:0002229
xref: FBbt:10000000
xref: FBbt_root:00000000
xref: FMA:62955
xref: HAO:0000000
xref: MA:0000001
xref: NCIT:C12219
xref: TAO:0100000
xref: TGMA:0001822
xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"}
xref: WBbt:0000100
xref: XAO:0000000
xref: ZFA:0100000
is_a: BFO:0000004 ! independent continuant

[Term]
id: UBERON:0001351
name: lacrimal sac
namespace: uberon
def: "The upper dilated end of the nasolacrimal duct that is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla; it connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity; like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue." [MGI:anna]
subset: pheno_slim
subset: uberon_slim
synonym: "lachrymal sac" EXACT []
synonym: "lacrymal sac" EXACT []
synonym: "saccus lacrimalis" EXACT LATIN [Wikipedia:Lacrimal_sac]
xref: FMA:20289
xref: MA:0001298
xref: NCIT:C32909
xref: SCTID:362534009
xref: UMLS:C0229289 {source="ncithesaurus:Lacrimal_Sac"}
xref: Wikipedia:Lacrimal_sac
relationship: part_of UBERON:0002392 ! nasolacrimal duct
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI

[Term]
id: UBERON:0001352
name: external acoustic meatus
namespace: uberon
def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus]
subset: pheno_slim
subset: uberon_slim
synonym: "auditory canal" EXACT []
synonym: "auditory meatus" RELATED [EHDAA2:0000460]
synonym: "ear canal" EXACT [Wikipedia:Ear_canal]
synonym: "external acoustic tube" EXACT [FMA:61734]
synonym: "external auditory canal" EXACT []
synonym: "external auditory meatus" RELATED []
synonym: "external auditory tube" EXACT [FMA:61734]
xref: EHDAA2:0000460
xref: EHDAA:8975
xref: EMAPA:17588
xref: EV:0100356
xref: FMA:61734
xref: GAID:864
xref: galen:ExternalAuditoryMeatus
xref: MA:0000260
xref: MESH:D004424
xref: NCIT:C12498
xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA
xref: SCTID:181178004
xref: UMLS:C0013444 {source="ncithesaurus:External_Acoustic_Meatus"}
xref: VHOG:0000977
xref: Wikipedia:External_acoustic_meatus
relationship: part_of UBERON:0001691 {source="FMA"} ! external ear
property_value: IAO:0000116 "consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct." xsd:string
property_value: UBPROP:0000011 "tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469]" xsd:string
property_value: UBPROP:0000012 "subdivision of head in FMA." xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0001457
name: skin of eyelid
namespace: uberon
def: "A zone of skin that is part of a eyelid [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "blepharon zone of skin" EXACT [OBOL:automatic]
synonym: "eyelid skin" EXACT []
synonym: "eyelid zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of blepharon" EXACT [OBOL:automatic]
synonym: "zone of skin of eyelid" EXACT [OBOL:automatic]
xref: EMAPA:37536 {source="MA:th"}
xref: FMA:24760
xref: MA:0001256
xref: NCIT:C52718
xref: SCTID:245947005
xref: UMLS:C0222088 {source="ncithesaurus:Eyelid_Skin"}
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0001459
name: skin of external ear
namespace: uberon
def: "A zone of skin that is part of a external ear [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic]
synonym: "auricular region zone of skin" EXACT [OBOL:automatic]
synonym: "ear skin" EXACT []
synonym: "external ear skin" EXACT []
synonym: "external ear zone of skin" EXACT [OBOL:automatic]
synonym: "outer ear zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of auricular region" EXACT [OBOL:automatic]
synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic]
synonym: "zone of skin of external ear" EXACT [OBOL:automatic]
synonym: "zone of skin of outer ear" EXACT [OBOL:automatic]
xref: EMAPA:35301
xref: FMA:24775
xref: MA:0001233
xref: NCIT:C49481
xref: SCTID:244073008
xref: UMLS:C0222110 {source="ncithesaurus:Ear_Skin"}
relationship: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0001576
name: intrinsic muscle of tongue
namespace: uberon
def: "The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII." [http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop]
synonym: "intrinsic lingual muscle" EXACT []
synonym: "intrinsic tongue muscle" EXACT []
xref: EHDAA2:0002064
xref: EHDAA:9152
xref: EMAPA:18280
xref: FMA:46701
xref: MA:0002327
xref: SCTID:244788005
xref: VHOG:0000748
relationship: part_of UBERON:0001723 ! tongue
property_value: UBPROP:0000001 "The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"}
property_value: UBPROP:0000003 "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000748", ontology="VHOG", source="DOI:10.1002/dvdy.20587 Kusakabe R, Kuratani S, Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000009 "The main function of the intrinsic muscles is to provide shape. They are not involved with changing the position of the tongue and are not attached to bone" xsd:string {source="WP"}

[Term]
id: UBERON:0001578
name: orbicularis oculi muscle
namespace: uberon
def: "A circumorbital muscle in the face that closes the eyelid[HP]." [Wikipedia:Orbicularis_oculi_muscle]
comment: It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [Wikipedia:Orbicularis_oculi_muscle]
subset: pheno_slim
subset: uberon_slim
synonym: "musculus orbicularis oculi" RELATED LATIN [Wikipedia:Orbicularis_oculi_muscle]
synonym: "orbicularis oculi" EXACT [Wikipedia:Orbicularis_oculi_muscle]
synonym: "tensor tarsi" RELATED [Wikipedia:Orbicularis_oculi_muscle]
xref: EMAPA:35619
xref: FMA:46779
xref: MA:0001254
xref: NCIT:C52886
xref: SCTID:244726006
xref: UMLS:C0224122 {source="ncithesaurus:Orbicularis_Oculi"}
xref: Wikipedia:Orbicularis_oculi_muscle
is_a: UBERON:0004277 ! eye muscle
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png xsd:anyURI

[Term]
id: UBERON:0001583
name: extrinsic auricular muscle
namespace: uberon
def: "Auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]." [http://www.daviddarling.info/encyclopedia/A/auricle.html, Wikipedia:Auriculares_muscles]
xref: EMAPA:37527 {source="MA:th"}
xref: FMA:46854
xref: MA:0001230
xref: SCTID:244758001
xref: Wikipedia:Auriculares_muscles
is_a: UBERON:0001595 ! auricular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/00/Gray906.png xsd:anyURI
property_value: UBPROP:0000012 "Wikipedia topic refers to the extrinsic auricular muscles" xsd:string

[Term]
id: UBERON:0001595
name: auricular muscle
namespace: uberon
def: "A muscle that is part of the pinna and is attached to the auricular cartilage" [http://orcid.org/0000-0002-6601-2165]
synonym: "attolens aurem muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "attrahens aurem muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriclular" BROAD []
synonym: "auriculares" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares anterior" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares muscles" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis muscles" RELATED [Wikipedia:Auricular_muscles]
synonym: "muscle of auricle" EXACT []
synonym: "musculi auriculares" EXACT LATIN [Wikipedia:Auricular_muscles]
synonym: "temporoparietalis" RELATED [Wikipedia:Auricular_muscles]
xref: EMAPA:35159
xref: FMA:48966
xref: MA:0001229
xref: SCTID:244757006
xref: Wikipedia:Auricular_muscles
relationship: part_of UBERON:0001757 {source="MA"} ! pinna
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI
property_value: UBPROP:0000014 "In some mammals these muscles can adjust the direction of the pinna. In humans these muscles possess very little action. The auricularis anterior draws the auricula forward and upward; the Auricularis superior slightly raises it; and the Auricularis posterior draws it backward." xsd:string

[Term]
id: UBERON:0001596
name: intrinsic auricular muscle
namespace: uberon
def: "Auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis" [http://www.daviddarling.info/encyclopedia/A/auricle.html]
xref: EMAPA:37528 {source="MA:th"}
xref: FMA:48967
xref: MA:0001231
xref: SCTID:244762007
is_a: UBERON:0001595 {source="FMA"} ! auricular muscle

[Term]
id: UBERON:0001599
name: stapedius muscle
namespace: uberon
def: "The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius_muscle]
subset: pheno_slim
subset: uberon_slim
synonym: "musculus stapedius" RELATED LATIN [Wikipedia:Stapedius_muscle]
synonym: "stapedius" EXACT [EHDAA2:0001909]
xref: EHDAA:9029
xref: EMAPA:18586
xref: FMA:49027
xref: GAID:164
xref: MA:0001220
xref: MESH:D013198
xref: NCIT:C33611
xref: SCTID:244780003
xref: UMLS:C0038151 {source="ncithesaurus:Stapedius_Muscle"}
xref: VHOG:0000813
xref: Wikipedia:Stapedius_muscle
is_a: UBERON:0004113 ! muscle of auditory ossicle
relationship: part_of UBERON:0001756 ! middle ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png xsd:anyURI
property_value: UBPROP:0000003 "The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000813", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.398", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001600
name: tensor tympani
namespace: uberon
alt_id: UBERON:0005238
def: "The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani_muscle]
subset: uberon_slim
synonym: "eustachian muscle" EXACT []
synonym: "M. tensor tympani" RELATED [Wikipedia:Tensor_tympani_muscle]
synonym: "musculus tensor tympani" RELATED LATIN [Wikipedia:Tensor_tympani_muscle]
synonym: "tensor tympani muscle" EXACT [Wikipedia:Tensor_tympani_muscle]
synonym: "tympanic muscle" RELATED [Wikipedia:Tensor_tympani_muscle]
xref: EHDAA2:0002002
xref: EHDAA:10167
xref: EHDAA:10191
xref: EMAPA:18587
xref: FMA:49028
xref: GAID:166
xref: MA:0001221
xref: MESH:D013719
xref: NCIT:C33748
xref: SCTID:244779001
xref: UMLS:C0039529 {source="ncithesaurus:Tensor_Tympani"}
xref: VHOG:0000698
xref: Wikipedia:Tensor_tympani_muscle
is_a: UBERON:0004113 ! muscle of auditory ossicle
relationship: part_of UBERON:0001756 {source="FMA"} ! middle ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png xsd:anyURI
property_value: UBPROP:0000003 "The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000698", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.333-334 and same reference Table 10-4", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001601
name: extra-ocular muscle
namespace: uberon
alt_id: UBERON:0006229
def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "extra-ocular skeletal muscle" EXACT []
synonym: "extraocular muscle" EXACT [FMA:49033]
synonym: "extraocular musculature" EXACT [ZFA:0000511]
synonym: "extraocular skeletal muscle" EXACT [MA:0001271]
synonym: "extrinsic eye muscle" EXACT [OBOL:automatic]
synonym: "extrinsic muscle of eyeball" EXACT [FMA:49033]
synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482]
synonym: "musculi externi bulbi oculi" RELATED LATIN [Wikipedia:Extraocular_muscles]
xref: AAO:0010028
xref: BTO:0001579
xref: CALOHA:TS-0305
xref: EFO:0001921
xref: EHDAA2:0000482
xref: EHDAA:5729
xref: EMAPA:18234
xref: FMA:49033
xref: MA:0001271
xref: SCTID:181150000
xref: TAO:0000511
xref: VHOG:0000549
xref: Wikipedia:Extraocular_muscles
xref: ZFA:0000511
is_a: UBERON:0004277 ! eye muscle
relationship: part_of UBERON:0000019 {source="MA"} ! camera-type eye
relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg xsd:anyURI
property_value: IAO:0000116 "todo - resolve discrepancies in which muscles are considered extra-ocular" xsd:string
property_value: UBPROP:0000001 "Any of the six small muscles that control movement of the eyeball within the socket. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000549", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/extraocular+muscle"}
property_value: UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010028", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these (extrinsic ocular) muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000549", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "extraocular" xsd:string
property_value: UBPROP:0000008 "Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi." xsd:string
property_value: UBPROP:0000011 "Myofibers in extraocular muscles are derived from mesoderm, whereas muscle connective tissue cells arise from neural crest.[PMID:16638982]" xsd:string
property_value: UBPROP:0000012 "BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate." xsd:string {external_ontology="BTO"}

[Term]
id: UBERON:0001602
name: medial rectus extraocular muscle
namespace: uberon
alt_id: UBERON:0004836
def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus_muscle]
comment: Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "m. rectus medialis" EXACT []
synonym: "medial recti" RELATED PLURAL [ZFA:0000301]
synonym: "medial rectus" EXACT [FMA:49037]
synonym: "medial rectus extraocular muscle" EXACT [MA:0001281]
synonym: "medial rectus muscle" EXACT []
synonym: "musculus rectus medialis" EXACT [AAO:0010113]
synonym: "musculus rectus medialis bulbi" RELATED LATIN [Wikipedia:Medial_rectus_muscle]
xref: AAO:0010113
xref: FMA:49037
xref: MA:0001281
xref: NCIT:C33068
xref: SCTID:181151001
xref: TAO:0000301
xref: UMLS:C0582820 {source="ncithesaurus:Medial_Rectus_Muscle"}
xref: VHOG:0001127
xref: Wikipedia:Medial_rectus_muscle
xref: ZFA:0000301
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI
property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001127", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001603
name: lateral rectus extra-ocular muscle
namespace: uberon
alt_id: UBERON:0004837
def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus_muscle]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "lateral extraocular muscle" RELATED []
synonym: "lateral recti" RELATED PLURAL [ZFA:0000383]
synonym: "lateral rectus" EXACT [FMA:49038]
synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280]
synonym: "lateral rectus muscle" EXACT []
synonym: "M. rectus lateralis" EXACT []
synonym: "musculus rectus lateralis" EXACT [AAO:0010107]
synonym: "musculus rectus lateralis bulbi" RELATED LATIN [Wikipedia:Lateral_rectus_muscle]
synonym: "posterior rectus" EXACT [ZFA:0000383, ZFIN:ZDB-PUB-970121-6]
xref: AAO:0010107
xref: FMA:49038
xref: MA:0001280
xref: NCIT:C32945
xref: SCTID:181152008
xref: TAO:0000383
xref: UMLS:C0582821 {source="ncithesaurus:Lateral_Rectus_Muscle"}
xref: VHOG:0001129
xref: Wikipedia:Lateral_rectus_muscle
xref: ZFA:0000383
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI
property_value: UBPROP:0000001 "Cranial nerve VI innervated; lateral in the rectus group.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010107", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001129", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001604
name: levator palpebrae superioris
namespace: uberon
def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris]
subset: pheno_slim
subset: uberon_slim
xref: EMAPA:36652
xref: FMA:49041
xref: MA:0001272
xref: NCIT:C52802
xref: SCTID:244774006
xref: UMLS:C0224134 {source="ncithesaurus:Levator_Palpebrae_Superioris"}
xref: Wikipedia:Levator_palpebrae_superioris
is_a: UBERON:0001601 {source="FMA"} ! extra-ocular muscle
relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI

[Term]
id: UBERON:0001605
name: ciliary muscle
namespace: uberon
def: "The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle]
subset: pheno_slim
subset: uberon_slim
synonym: "Bowman`s muscles" RELATED [BTO:0000654]
synonym: "ciliaris" RELATED [Wikipedia:Ciliary_muscle]
synonym: "musculus ciliaris" RELATED LATIN [Wikipedia:Ciliary_muscle]
synonym: "musculus ciliarus" EXACT [BTO:0000654]
xref: BTO:0000654
xref: EMAPA:35240
xref: FMA:49151
xref: MA:0001269
xref: NCIT:C32315
xref: SCTID:280862009
xref: UMLS:C0559230 {source="ncithesaurus:Ciliary_Muscle"}
xref: Wikipedia:Ciliary_muscle
is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye
is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle
relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png xsd:anyURI

[Term]
id: UBERON:0001606
name: muscle of iris
namespace: uberon
def: "." [Wikipedia:Iris_muscle]
subset: uberon_slim
synonym: "iris muscle" EXACT []
synonym: "iris muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of iris" EXACT [OBOL:automatic]
xref: EMAPA:35448
xref: FMA:49154
xref: MA:0001287
xref: SCTID:280888007
xref: Wikipedia:Iris_muscle
is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle
relationship: part_of UBERON:0001769 ! iris
property_value: IAO:0000116 "revisit this, see issue #331" xsd:string
property_value: UBPROP:0000008 "in aves, stromal mesenchymal cells may migrate to the iris and become skeletal" xsd:string
property_value: UBPROP:0000008 "The muscle cells of the iris are smooth muscle in mammals and amphibians, but are striated muscle in birds and reptiles. Many fish have neither, and, as a result, their irides are unable to dilate and contract, so that the pupil always remains of a fixed size[Romer, via WP]" xsd:string

[Term]
id: UBERON:0001607
name: sphincter pupillae
namespace: uberon
def: "A sphincter muscle that is part of the iris." [Wikipedia:Iris_sphincter_muscle]
subset: uberon_slim
synonym: "circular fibers" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "constrictor pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris constrictor" RELATED []
synonym: "iris constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris sphincter" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris sphincter muscle" EXACT [BTO:0000656]
synonym: "M. sphincter pupillae" EXACT []
synonym: "m. sphincter pupillae" RELATED LATIN [Wikipedia:Iris_sphincter_muscle]
synonym: "musculus sphincter pupillae" EXACT [BTO:0000656]
synonym: "pupillary constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "pupillary sphincter" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "pupillary sphincter muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "sphincter muscle of pupil" EXACT [BTO:0000656]
synonym: "sphincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "sphincter pupillae muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "spincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
xref: BTO:0000656
xref: EMAPA:35788
xref: FMA:49157
xref: MA:0001289
xref: NCIT:C33586
xref: SCTID:280889004
xref: UMLS:C0229189 {source="ncithesaurus:Sphincter_Pupillae_Muscle"}
xref: Wikipedia:Iris_sphincter_muscle
is_a: UBERON:0001606 ! muscle of iris
is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle
relationship: part_of UBERON:0001769 ! iris
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png xsd:anyURI
property_value: UBPROP:0000008 "In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]" xsd:string
property_value: UBPROP:0000008 "WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure" xsd:string
property_value: UBPROP:0000009 "constricts iris" xsd:string

[Term]
id: UBERON:0001608
name: dilatator pupillae
namespace: uberon
def: "A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]." [Wikipedia:Iris_dilator_muscle]
subset: uberon_slim
synonym: "dilator muscle of pupil" EXACT []
synonym: "dilator of pupil" EXACT []
synonym: "dilator pupillae" EXACT []
synonym: "dilator pupillae muscle" EXACT [Wikipedia:Iris_dilator_muscle]
synonym: "dilator pupillae muscle" RELATED [BTO:0001371]
synonym: "iris dilator" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "iris dilator muscle" EXACT [BTO:0001371]
synonym: "musculus dilatator pupillae" EXACT LATIN [FMA:49158, FMA:TA]
synonym: "musculus dilatator pupillae" RELATED LATIN [Wikipedia:Iris_dilator_muscle]
synonym: "musculus dilator pupillae" RELATED [BTO:0001371]
synonym: "pupil dilator" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "pupil dilator muscle" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "pupillary dilator" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "pupillary dilator muscle" EXACT [Wikipedia:Iris_dilator_muscle]
synonym: "pupillary muscle" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "radial muscle" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "radial muscle of iris" EXACT [Wikipedia:Iris_dilator_muscle]
synonym: "radiating fibers" RELATED [Wikipedia:Iris_dilator_muscle]
xref: BTO:0001371
xref: EMAPA:35286
xref: FMA:49158
xref: MA:0001288
xref: NCIT:C32463
xref: SCTID:280890008
xref: UMLS:C0229190 {source="ncithesaurus:Dilator_Pupillae_Muscle"}
xref: Wikipedia:Iris_dilator_muscle
is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png xsd:anyURI
property_value: UBPROP:0000009 "It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina" xsd:string

[Term]
id: UBERON:0001610
name: lingual artery
namespace: uberon
def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery]
subset: uberon_slim
synonym: "arteria lingualis" RELATED LATIN [Wikipedia:Lingual_artery]
synonym: "lingual branch of external carotid artery" EXACT []
xref: AAO:0010492
xref: EMAPA:36324
xref: FMA:49526
xref: MA:0001992
xref: NCIT:C52961
xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA
xref: SCTID:181327002
xref: UMLS:C0226104 {source="ncithesaurus:Lingual_Artery"}
xref: Wikipedia:Lingual_artery
relationship: part_of UBERON:0001723 ! tongue
property_value: depicted:by Lingual:artery.PNG xsd:anyURI
property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tongue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO", source="AAO:BJB"}
property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010492", ontology="AAO"}

[Term]
id: UBERON:0001611
name: sublingual artery
namespace: uberon
def: "A branch of the lingual artery that supplies the sublingual gland." [http://orcid.org/0000-0002-6601-2165]
subset: uberon_slim
synonym: "arteria sublingualis" RELATED LATIN [Wikipedia:Sublingual_artery]
synonym: "sublingual branch of lingual artery" EXACT []
xref: AAO:0010491
xref: EMAPA:37115 {source="MA:th"}
xref: FMA:49543
xref: MA:0002049
xref: NCIT:C53002
xref: SCTID:368706006
xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"}
xref: Wikipedia:Sublingual_artery
relationship: part_of UBERON:0001610 ! lingual artery
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png xsd:anyURI
property_value: IAO:0000116 "Check grouping with amphibian structure of the same name" xsd:string
property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tip of the snout where branches go to the tongue and the m. geniohyoideus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO", source="AAO:BJB"}
property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010491", ontology="AAO"}

[Term]
id: UBERON:0001620
name: central retinal artery
namespace: uberon
def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery]
subset: uberon_slim
synonym: "arteria centralis retinae" RELATED [Wikipedia:Central_retinal_artery]
synonym: "arteria centralis retinae" RELATED LATIN [Wikipedia:Central_retinal_artery]
synonym: "central artery of retina" EXACT []
synonym: "central artery of the retina" RELATED [Wikipedia:Central_retinal_artery]
synonym: "retinal artery" EXACT []
synonym: "Zinn's artery" EXACT []
xref: EMAPA:37113 {source="MA:th"}
xref: FMA:49879
xref: GAID:508
xref: MA:0002038
xref: MESH:D012161
xref: NCIT:C52997
xref: SCTID:277771001
xref: UMLS:C0035301 {source="ncithesaurus:Retinal_Artery"}
xref: Wikipedia:Central_retinal_artery
is_a: UBERON:0003501 ! retina blood vessel
relationship: part_of UBERON:0004864 ! vasculature of retina
property_value: depicted:by Gray514:updated.png xsd:anyURI

[Term]
id: UBERON:0001648
name: vestibulocochlear nerve
namespace: uberon
def: "Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "8n" BROAD ABBREVIATION [BIRNLEX:890, NIFSTD:NeuroNames_abbrevSource]
synonym: "acoustic nerve" EXACT [FMA:50869]
synonym: "acoustic nerve (Crosby)" EXACT []
synonym: "acoustic VIII nerve" EXACT []
synonym: "CN-VIII" EXACT []
synonym: "cochlear-vestibular nerve" EXACT []
synonym: "cochleovestibular nerve" EXACT []
synonym: "cranial nerve VIII" EXACT []
synonym: "eighth cranial nerve" EXACT []
synonym: "nervus octavus" RELATED LATIN [NeuroNames:553]
synonym: "nervus statoacusticus" RELATED LATIN [NeuroNames:553]
synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490]
synonym: "nervus vestibulocochlearis [viii]" EXACT LATIN [FMA:50869, FMA:TA]
synonym: "octaval nerve" RELATED []
synonym: "stato-acoustic nerve" EXACT []
synonym: "statoacoustic nerve" RELATED []
synonym: "vestibulocochlear nerve [VIII]" EXACT []
synonym: "vestibulocochlear nerve tree" EXACT []
synonym: "vestibulocochlear VIII nerve" EXACT []
synonym: "VIII nerve" EXACT []
synonym: "VIIIth cranial nerve" EXACT []
xref: AAO:0010473
xref: BAMS:8n
xref: BAMS:nVIII
xref: BAMS:VIIIn
xref: BIRNLEX:890
xref: BTO:0003490
xref: EHDAA2:0002194
xref: EMAPA:17801
xref: FMA:50869
xref: GAID:839
xref: HBA:9331
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=553 {source="BIRNLEX:890"}
xref: MA:0001109
xref: MBA:933
xref: MESH:D000159
xref: NCIT:C12996
xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA
xref: SCTID:180945001
xref: TAO:0000247
xref: UMLS:C0001162 {source="BIRNLEX:890"}
xref: UMLS:C0001162 {source="ncithesaurus:Vestibulocochlear_Nerve"}
xref: UMLS:C1278835 {source="BIRNLEX:890"}
xref: VHOG:0000695
xref: Wikipedia:Vestibulocochlear_nerve
xref: XAO:0003095
xref: ZFA:0000247
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png xsd:anyURI
property_value: UBPROP:0000001 "Nerve primarily composed of special somatic afferent fibers innervating the inner ear, and is involved in balance, position, and hearing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010473", ontology="AAO", source="AAO:DSM"}
property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000695", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.625", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001673
name: central retinal vein
namespace: uberon
def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [Wikipedia:Central_retinal_vein]
subset: efo_slim
subset: uberon_slim
synonym: "retinal vein" EXACT [MA:0002213]
synonym: "vena centralis retinae" RELATED LATIN [Wikipedia:Central_retinal_vein]
xref: EFO:0004271
xref: EMAPA:37185 {source="MA:th"}
xref: FMA:51799
xref: GAID:524
xref: MA:0002213
xref: MESH:D012169
xref: NCIT:C53063
xref: SCTID:280913005
xref: UMLS:C0035327 {source="ncithesaurus:Retinal_Vein"}
xref: Wikipedia:Central_retinal_vein
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0001681
name: nasal bone
namespace: uberon
def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [https://github.com/obophenotype/uberon/issues/265, Wikipedia:Nasal_bone, ZFIN:curator]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "nasal bones" RELATED PLURAL [ZFA:0000365]
synonym: "nasals" RELATED PLURAL [TAO:0000365]
synonym: "os nasale" RELATED LATIN [Wikipedia:Nasal_bone]
xref: AAO:0000312
xref: EMAPA:19202
xref: FMA:52745
xref: GAID:222
xref: MA:0001494
xref: MESH:D009295
xref: NCIT:C33157
xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA
xref: SCTID:181801008
xref: TAO:0000365
xref: UMLS:C0027422 {source="ncithesaurus:Nasal_Bone"}
xref: VHOG:0001370
xref: Wikipedia:Nasal_bone
xref: ZFA:0000365
relationship: part_of UBERON:0000004 ! nose
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg xsd:anyURI
property_value: UBPROP:0000001 "Paired bone of intramembranous origin that roofs the olfactory capsule.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000312", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000001 "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000365", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: overlaps mesethmoid-nasal joint (TAO:0001677)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000365", ontology="TAO"}
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000312", ontology="AAO"}
property_value: UBPROP:0000005 "Synonym adnasal used in Weitzman 1960, and synonym discussed in Vari 1995.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000365", ontology="TAO", source="Curator"}
property_value: UBPROP:0000008 "In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X)" xsd:string

[Term]
id: UBERON:0001686
name: auditory ossicle bone
namespace: uberon
def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [https://github.com/obophenotype/uberon/issues/91, Wikipedia:Auditory_ossicle]
subset: pheno_slim
subset: uberon_slim
synonym: "auditory bone" EXACT []
synonym: "auditory ossicle" RELATED [MA:0000254]
synonym: "ear bone" RELATED [MA:0000254]
synonym: "ear ossicle" RELATED []
synonym: "ear ossicles" RELATED PLURAL []
synonym: "middle ear bone" RELATED []
synonym: "middle ear ossicle" EXACT [MP:0005105]
synonym: "ossicle" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle]
synonym: "ossicle of ear" RELATED []
synonym: "ossicle of inner ear" RELATED []
synonym: "ossicular chain" RELATED PLURAL []
xref: AAO:0011015
xref: EHDAA2:0001183
xref: EHDAA:5697
xref: EMAPA:17824
xref: EV:0100360
xref: FMA:52750
xref: MA:0000254
xref: NCIT:C32164
xref: SCTID:181184001
xref: UMLS:C0013450 {source="ncithesaurus:Auditory_Ossicle"}
xref: VHOG:0000461
xref: Wikipedia:Auditory_ossicle
xref: XAO:0000214
is_a: UBERON:0035130 ! auditory ossicle endochondral element
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg xsd:anyURI
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: IAO:0000116 "This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5." xsd:string
property_value: UBPROP:0000001 "The small bones of the middle ear: incus, malleus, and stapes. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/auditory+ossicles"}
property_value: UBPROP:0000003 "Additional structural analysis within a phylogenetic context has led to the remarkable discovery that in synapsids, thought to be ancestral to mammals, both the quadrate and articular have become reduced and less firmly articulated with their surrounding bones, reducing their jaw-joint-bearing role. This trend culminated with the incorporation of the quadrate, the columella (which remains articulated with the quadrate), and the articular into the expanded middle ear in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.695", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000011 "Studies have shown that ear bones in mammal embryos are attached to the dentary, which is part of the jaw. These are ossified portions of cartilage -- called Meckel's cartilage -- that are attached to the jaw. As the embryo develops, the cartilage hardens to form bone. Later in development, the bone structure breaks loose from the jaw and migrates to the inner ear area. The structure is known as the middle ear, and is made up of the incus, stapes, malleus, and tympanic membrane. These correspond to the quadrate, prearticular, articular, and angular structures in the reptile jaw. For this reason, researchers believe the similarity of the results shows that mammals and reptiles have a common ancestry." xsd:string {source="WP"}

[Term]
id: UBERON:0001687
name: stapes bone
namespace: uberon
def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [DOI:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes]
subset: pheno_slim
subset: uberon_slim
synonym: "columella" RELATED SENSU [Wikipedia:Stapes]
synonym: "columella auris" RELATED [AAO:0000580]
synonym: "columellare" RELATED [AAO:0000580]
synonym: "interstapediale" RELATED [AAO:0000580]
synonym: "mediostapediale" RELATED [AAO:0000580]
synonym: "mesostapediale" RELATED [AAO:0000580]
synonym: "os columellare" RELATED [AAO:0000580]
synonym: "os intermedium" RELATED [AAO:0000580]
synonym: "stapellos" RELATED LATIN [Wikipedia:Stapes]
synonym: "stapes" RELATED [AAO:0000580]
synonym: "stelidium" RELATED [AAO:0000580]
synonym: "stilus columellare" RELATED [AAO:0000580]
synonym: "stirrup" EXACT []
xref: EMAPA:18585
xref: FMA:52751
xref: GAID:868
xref: MA:0001217
xref: MESH:D013199
xref: NCIT:C33612
xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA
xref: SCTID:264199009
xref: UMLS:C0038152 {source="ncithesaurus:Stapes"}
xref: VHOG:0000688
xref: Wikipedia:Stapes
is_a: UBERON:0001686 ! auditory ossicle bone
is_a: UBERON:0015016 ! stapes endochondral element
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png xsd:anyURI
property_value: UBPROP:0000003 "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "'This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.' Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357?[VHOG]." xsd:string
property_value: UBPROP:0000011 "As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes." xsd:string {source="DOI:10.1111/j.1469-7580.2005.00441.x"}

[Term]
id: UBERON:0001688
name: incus bone
namespace: uberon
def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus]
subset: pheno_slim
subset: uberon_slim
synonym: "incus" EXACT [MA:0001215]
synonym: "incus bone" EXACT []
synonym: "quadrate - incus" BROAD [VHOG:0000689]
xref: EMAPA:18583
xref: FMA:52752
xref: GAID:866
xref: MA:0001215
xref: MESH:D007188
xref: NCIT:C32770
xref: SCTID:272649008
xref: UMLS:C0021181 {source="ncithesaurus:Incus"}
xref: VHOG:0000689
xref: Wikipedia:Incus
is_a: UBERON:0001686 ! auditory ossicle bone
is_a: UBERON:0015017 ! incus endochondral element
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png xsd:anyURI
property_value: UBPROP:0000003 "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000689", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001689
name: malleus bone
namespace: uberon
def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus]
subset: pheno_slim
subset: uberon_slim
synonym: "anguloarticular - malleus" BROAD [VHOG:0000690]
synonym: "malleus" BROAD [MA:0001216]
synonym: "malleus" EXACT LATIN [Wikipedia:Malleus]
xref: EMAPA:18584
xref: FMA:52753
xref: GAID:867
xref: MA:0001216
xref: MESH:D008307
xref: NCIT:C33051
xref: SCTID:264090005
xref: UMLS:C0024631 {source="ncithesaurus:Malleus"}
xref: VHOG:0000690
xref: Wikipedia:Malleus
is_a: UBERON:0001686 ! auditory ossicle bone
is_a: UBERON:0015018 ! malleus endochondral element
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png xsd:anyURI
property_value: UBPROP:0000003 "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000690", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001690
name: ear
namespace: uberon
def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
subset: efo_slim
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
synonym: "auditory apparatus" RELATED []
synonym: "auris" RELATED [BTO:0000368]
xref: AAO:0011014
xref: BIRNLEX:1062
xref: BTO:0000368
xref: CALOHA:TS-1165
xref: EFO:0000826
xref: EHDAA2:0000423
xref: EHDAA:502
xref: EMAPA:16193
xref: EV:0100353
xref: FMA:52780
xref: GAID:62
xref: galen:Ear
xref: MA:0000236
xref: MAT:0000138
xref: MESH:D004423
xref: MIAA:0000138
xref: NCIT:C12394
xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
xref: SCTID:1910005
xref: UMLS:C0013443 {source="ncithesaurus:Ear"}
xref: UMLS:C0013443 {source="BIRNLEX:1062"}
xref: UMLS:C0521421 {source="BIRNLEX:1062"}
xref: VHOG:0000330
xref: Wikipedia:Ear
xref: XAO:0000189
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg xsd:anyURI
property_value: UBPROP:0000001 "The organ of hearing and of equilibrium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000330", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/ear"}
property_value: UBPROP:0000003 "Both vertebrate and invertebrate auditory organs are thought to have evolved from primitive mechanosensors, but the nature of the ancestral structure and the evolutionary trajectories followed in distinct animal lineages remain unknown. In particular, we do not know how many types of mechanosensor existed in the protostome-deuterostome ancestor from which insects and vertebrates evolved or whether the PDA had an auditory organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000330", ontology="VHOG", source="DOI:10.1002/dvdy.20207 Boekhoff-Falk G, Hearing in Drosophila: Development of Johnston's organ and emerging parallels to vertebrate ear development. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "auricular" xsd:string

[Term]
id: UBERON:0001691
name: external ear
namespace: uberon
def: "Part of the ear external to the tympanum (eardrum). It typically consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
synonym: "auricular region" BROAD []
synonym: "auricular region of head" EXACT []
synonym: "auris externa" RELATED [BTO:0002100]
synonym: "outer ear" EXACT [MA:0000258]
xref: AAO:0011037
xref: BIRNLEX:1705
xref: BTO:0002100
xref: EFO:0004221
xref: EHDAA2:0000462
xref: EHDAA:3786
xref: EMAPA:16991
xref: EV:0100354
xref: FMA:52781
xref: GAID:104
xref: MA:0000258
xref: MAT:0000147
xref: MESH:D004431
xref: MIAA:0000147
xref: NCIT:C12292
xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA
xref: SCTID:420893000
xref: UMLS:C0013453 {source="ncithesaurus:External_Ear"}
xref: UMLS:C0013453 {source="BIRNLEX:1705"}
xref: UMLS:C1269548 {source="BIRNLEX:1705"}
xref: VHOG:0000311
xref: Wikipedia:External_ear
xref: XAO:0000190
relationship: part_of UBERON:0001690 ! ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/29/Gray907.png xsd:anyURI
property_value: RO:0002161 NCBITaxon:9709 {source="Wikipedia"}
property_value: UBPROP:0000001 "The external part of the organ, which consists of an outer portion (external auditory meatus) which leads to the tympanum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000311", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "Some species, like Amolops tormotus (Feng et al. 2006), have a cavity in front of the tympanic membrane which is considered to be an ear canal and thus an outer ear. (...) The ancestral lineage of amphibians separated from the mammalian lineage, approximately 350 million years ago, in the paleozoic era. Many of the important developments in the auditory systems emerged after the ancestral paths separated (Manley and Clack 2003). This implies that shared features, like the tympanic middle ear, developed independently in different vertebrate lineages.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000311", ontology="VHOG", source="DOI:10.1007/s00359-008-0327-1 Schoffelen RLM, Segenhout JM, Van Dijk P, Mechanics of the exceptional anuran ear. Journal of Comparative Physiology A (2008)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "in XAO this includes and is only the tympanum" xsd:string {external_ontology="XAO"}

[Term]
id: UBERON:0001706
name: nasal septum
namespace: uberon
def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum]
subset: pheno_slim
subset: uberon_slim
synonym: "septal cartilage" RELATED [Wikipedia:Nasal_septum]
synonym: "septum mobile nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "septum nasi" RELATED LATIN [Wikipedia:Nasal_septum]
synonym: "septum nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "septum of the nose" RELATED [Wikipedia:Nasal_septum]
xref: AAO:0000559
xref: AAO:0010135
xref: EHDAA2:0001234
xref: EHDAA2:0004104
xref: EHDAA:6809
xref: EMAPA:17608
xref: FMA:54375
xref: GAID:115
xref: MA:0000285
xref: MESH:A02.165.639
xref: NCIT:C33160
xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA
xref: SCTID:181197004
xref: UMLS:C0027432 {source="ncithesaurus:Nasal_Septum"}
xref: VHOG:0000017
xref: Wikipedia:Nasal_septum
relationship: part_of UBERON:0000004 ! nose
relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png xsd:anyURI
property_value: IAO:0000116 "We follow AAO in making this part of the nasal skeleton" xsd:string
property_value: UBPROP:0000001 "A median dividing wall, sagittally directed, which divides the nasal cavity into the right and the left nasal fossae. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000017", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000001 "Medial vertical wall between nasal capsules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010135", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000001 "Medial, vertical plate that separates the nasal capsules.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000559", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000003 "Whatever the common ancestor of the lamprey and gnathostomes may have looked like, it most likely possessed a neural-crest-derived premandibular ectomesenchyme closely associated with the NHP. Invention of the jaw subsequently required a space for the nasal septum and maxillary process to develop, which might have been provided by subdivision of the NHP into the nasal placode and the hypophysis (diplorhiny, the state of bilaterally separated nasal openings, would also have been a prerequisite for this).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000017", ontology="VHOG", source="DOI:10.1098/rstb.2001.0976 Kuratani S, Nobusada Y, Horigome N, Shigetani Y, Embryology of the lamprey and evolution of the vertebrate jaw: insights from molecular and developmental perspectives. Philosophical transactions of the Royal Society of London (2001)", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001707
name: nasal cavity
namespace: uberon
def: "An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "cavitas nasalis" RELATED [BTO:0002096]
synonym: "cavitas nasi" RELATED LATIN [Wikipedia:Nasal_cavity]
synonym: "cavitas nasi" RELATED [BTO:0002096]
synonym: "cavity of nose" EXACT []
synonym: "cavity of olfactory apparatus" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "cavum nasi" RELATED LATIN [Wikipedia:Nasal_cavity]
synonym: "nasal canal" EXACT [ZFA:0000130]
synonym: "nasal conduit space" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity]
synonym: "nasal pit" RELATED []
synonym: "olfactory cavity" RELATED []
synonym: "olfactory chamber" RELATED [http://orcid.org/0000-0002-6601-2165]
synonym: "olfactory chamber cavity" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130]
xref: AAO:0000314
xref: BTO:0002096
xref: EHDAA2:0001226
xref: EHDAA:6801
xref: EMAPA:17604
xref: FMA:54378
xref: GAID:350
xref: MA:0000284
xref: MESH:D009296
xref: NCIT:C12424
xref: SCTID:263481003
xref: TAO:0000130
xref: UMLS:C0027423 {source="ncithesaurus:Nasal_Cavity"}
xref: VHOG:0000271
xref: Wikipedia:Nasal_cavity
xref: ZFA:0000130
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0015788 {source="cjm"} ! olfactory apparatus chamber
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg xsd:anyURI
property_value: IAO:0000116 "define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong." xsd:string
property_value: UBPROP:0000001 "a large air filled space above and behind the nose in the middle of the face[WP][Wikipedia:Nasal_cavity]." xsd:string {source="Wikipedia:Nasal_cavity"}
property_value: UBPROP:0000001 "Saclike space internal to the nasal capsule lined by respiratory and sensory epithelium and glandular tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000314", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000003 "Despite significant modification to the nasal cavity within Archosauria and its extreme hypertrophy and supraorbital development in Lambeosaurinae, the neural olfactory system and the olfactory region of the nasal cavity proper retain their plesiomorphic positions and associations, suggesting that this system is highly conserved in vertebrate evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000271", ontology="VHOG", source="DOI:10.1666/0094-8373(2006)032[0109:NCHACC]2.0.CO;2 Evans DC, Nasal cavity homologies and cranial crest function in lambeosaurine dinosaurs. Paleobiology (2006)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "in humans, the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures" xsd:string {source="HP"}

[Term]
id: UBERON:0001711
name: eyelid
namespace: uberon
def: "A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane" [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
subset: uberon_slim
synonym: "blephara" RELATED PLURAL []
synonym: "blepharon" EXACT []
synonym: "eye lid" EXACT []
synonym: "palpebra" EXACT []
synonym: "palpebrae" RELATED PLURAL []
xref: BTO:0002241
xref: EHDAA2:0000487
xref: EHDAA:9037
xref: EMAPA:17829
xref: EV:0100338
xref: FMA:54437
xref: GAID:72
xref: MA:0000268
xref: MESH:D005143
xref: NCIT:C12713
xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA
xref: SCTID:265782007
xref: UMLS:C0015426 {source="ncithesaurus:Eyelid"}
xref: VHOG:0000016
xref: Wikipedia:Eyelid
relationship: part_of UBERON:0000019 {source="multiple"} ! camera-type eye
property_value: depicted:by Eye:makeup.jpg xsd:anyURI
property_value: UBPROP:0000007 "blepharic" xsd:string
property_value: UBPROP:0000007 "palpebral" xsd:string
property_value: UBPROP:0000008 "In humans the upper and lower eyelid consists of the following layers, starting anteriorly: (1) skin, (2) a layer of subcutaneous connective tissue, (3) a layer of striated muscle fibres of the orbicularis muscle, (4) a layer of submuscular connective tissue, (5) a fibrous layer, including the tarsal plates, (6) a layer of smooth muscle, (7) the palpebral conjunctiva." xsd:string
property_value: UBPROP:0000012 "Consider adding 'eye surface', like MA" xsd:string {external_ontology="MA"}
property_value: UBPROP:0000012 "FMA divides this into skin, fascia, conjunctiva" xsd:string {external_ontology="FMA"}
property_value: UBPROP:0000202 FMA:75178

[Term]
id: UBERON:0001712
name: upper eyelid
namespace: uberon
subset: pheno_slim
subset: uberon_slim
synonym: "palpebra superior" EXACT LATIN [FMA:54439, FMA:TA]
synonym: "superior eyelid" EXACT []
xref: EHDAA2:0002115
xref: EHDAA:9047
xref: EMAPA:17834
xref: FMA:54439
xref: MA:0001267
xref: NCIT:C49581
xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA
xref: SCTID:244499008
xref: UMLS:C0585636 {source="ncithesaurus:Upper_Eyelid"}
xref: VHOG:0000389
is_a: UBERON:0001711 ! eyelid
property_value: depicted:by Eye:makeup.jpg xsd:anyURI
property_value: UBPROP:0000003 "A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000389", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.431", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001713
name: lower eyelid
namespace: uberon
subset: pheno_slim
subset: uberon_slim
synonym: "inferior eyelid" EXACT []
synonym: "palpebra inferior" EXACT LATIN [FMA:54442, FMA:TA]
xref: AAO:0010349
xref: EHDAA2:0001015
xref: EHDAA:9041
xref: EMAPA:17831
xref: FMA:54442
xref: MA:0001263
xref: NCIT:C49580
xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA
xref: SCTID:362528002
xref: UMLS:C0229258 {source="ncithesaurus:Lower_Eyelid"}
xref: VHOG:0000388
xref: XAO:0000007
is_a: UBERON:0001711 ! eyelid
property_value: depicted:by Eye:makeup.jpg xsd:anyURI
property_value: UBPROP:0000003 "A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000388", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.431", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001721
name: inferior vestibular nucleus
namespace: uberon
def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus]
subset: uberon_slim
synonym: "descending vestibular nucleus" EXACT [FMA:54608]
synonym: "nucleus vestibularis inferior" RELATED LATIN [Wikipedia:Inferior_vestibular_nucleus]
synonym: "spinal vestibular nucleus" EXACT [FMA:54608]
xref: BAMS:IVe
xref: BAMS:SPIV
xref: BAMS:SpVe
xref: BAMS:SPVN
xref: BM:Me-VS-VSI
xref: BTO:0004369
xref: EMAPA:35797
xref: EV:0100258
xref: FMA:54608
xref: HBA:9702
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=718
xref: MA:0001054
xref: MBA:225
xref: NCIT:C33591
xref: SCTID:280175006
xref: UMLS:C0175498 {source="ncithesaurus:Spinal_Vestibular_Nucleus"}
xref: Wikipedia:Inferior_vestibular_nucleus
is_a: UBERON:0007228 ! vestibular nucleus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png xsd:anyURI

[Term]
id: UBERON:0001722
name: medial vestibular nucleus
namespace: uberon
def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus]
subset: uberon_slim
synonym: "chief vestibular nucleus" EXACT [FMA:54611]
synonym: "dorsal vestibular nucleus" EXACT [FMA:54611]
synonym: "medial nucleus" RELATED [Wikipedia:Medial_vestibular_nucleus]
synonym: "nucleus of Schwalbe" EXACT [FMA:54611]
synonym: "nucleus triangularis" EXACT LATIN [FMA:54611, FMA:TA]
synonym: "nucleus vestibularis medialis" RELATED LATIN [Wikipedia:Medial_vestibular_nucleus]
synonym: "principal vestibular nucleus" EXACT [FMA:54611]
synonym: "Schwalbe's nucleus" EXACT [FMA:54611]
synonym: "triangular nucleus" EXACT [FMA:54611]
xref: BAMS:MV
xref: BAMS:MVe
xref: BAMS:MVN
xref: BAMS:VMN
xref: BM:Me-VS-VSM
xref: BTO:0004371
xref: DHBA:12581
xref: EMAPA:35554
xref: FMA:54611
xref: HBA:9700
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=717
xref: MA:0001048
xref: MBA:202
xref: NCIT:C33069
xref: PBA:10125
xref: SCTID:280174005
xref: UMLS:C0036385 {source="ncithesaurus:Medial_Vestibular_Nucleus"}
xref: Wikipedia:Medial_vestibular_nucleus
is_a: UBERON:0007228 ! vestibular nucleus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png xsd:anyURI
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg xsd:anyURI

[Term]
id: UBERON:0001723
name: tongue
namespace: uberon
def: "A muscular organ in the floor of the mouth." [FEED:rd, https://github.com/obophenotype/uberon/issues/256]
subset: efo_slim
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "glossus" RELATED [Wikipedia:Tongue]
xref: AAO:0010360
xref: BTO:0001385
xref: CALOHA:TS-1050
xref: EFO:0000833
xref: EHDAA2:0002062
xref: EHDAA:9144
xref: EMAPA:17185
xref: EV:0100058
xref: FMA:54640
xref: GAID:816
xref: MA:0000347
xref: MAT:0000040
xref: MESH:D014059
xref: MIAA:0000040
xref: NCIT:C12422
xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ
xref: SCTID:181226008
xref: TAO:0005333
xref: UMLS:C0040408 {source="ncithesaurus:Tongue"}
xref: VHOG:0000419
xref: Wikipedia:Tongue
xref: XAO:0000446
xref: ZFA:0005333
is_a: UBERON:0000020 {source="GO"} ! sense organ
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg xsd:anyURI
property_value: IAO:0000116 "in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence." xsd:string
property_value: UBPROP:0000001 "A mobile mass of muscular tissue that is covered with mucous membrane, occupies much of the cavity of the mouth, forms part of its floor, bears the organ of taste, and assists in chewing and swallowing. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000419", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/tongue"}
property_value: UBPROP:0000001 "Muscular organ in the floor of the mouth.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"}
property_value: UBPROP:0000001 "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO][GO:0043586]." xsd:string {source="GO:0043586"}
property_value: UBPROP:0000003 "Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000419", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2002.00073.x Iwasaki S, Evolution of the structure and function of the vertebrate tongue. J Anat (2002)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "glossal" xsd:string
property_value: UBPROP:0000007 "lingual" xsd:string
property_value: UBPROP:0000008 "Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods" xsd:string
property_value: UBPROP:0000011 "The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions" xsd:string

[Term]
id: UBERON:0001726
name: papilla of tongue
namespace: uberon
subset: pheno_slim
synonym: "lingual papilla" EXACT []
synonym: "tongue papilla" EXACT []
xref: BIRNLEX:4102
xref: EMAPA:32777
xref: FMA:54819
xref: MA:0001593
xref: NCIT:C33258
xref: SCTID:368728006
xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"}
xref: UMLS:C0226964 {source="BIRNLEX:4102"}
xref: UMLS:C1289183 {source="BIRNLEX:4102"}
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0005020 ! mucosa of tongue
relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue

[Term]
id: UBERON:0001727
name: taste bud
namespace: uberon
def: "A specialized receptor organ that is a collection of cells spanning the gustatory epithelium." [http://periowiki.wikispot.org/Taste_bud_histology]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "caliculus gustatorius" RELATED PLURAL [Wikipedia:Taste_bud]
synonym: "caliculus gustatorius" RELATED LATIN [Wikipedia:Taste_bud]
synonym: "taste buds" RELATED PLURAL [Wikipedia:Taste_bud]
synonym: "taste-bud" RELATED [Wikipedia:Taste_bud]
synonym: "tastebud" EXACT [Wikipedia:Taste_bud]
synonym: "tastebuds" RELATED PLURAL [Wikipedia:Taste_bud]
xref: AAO:0010573
xref: BIRNLEX:4101
xref: BTO:0000989
xref: CALOHA:TS-1015
xref: EMAPA:35850
xref: FMA:54825
xref: GAID:815
xref: http://uri.neuinfo.org/nif/nifstd/nifext_14
xref: MA:0001591
xref: MESH:A08.800.550.700.120.800
xref: NCIT:C96518
xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA
xref: SCTID:362099006
xref: TAO:0001074
xref: UMLS:C0039337 {source="ncithesaurus:Taste_Bud"}
xref: UMLS:C0039337 {source="BIRNLEX:4101"}
xref: VHOG:0000130
xref: Wikipedia:Taste_bud
xref: XAO:0000445
xref: ZFA:0001074
is_a: UBERON:0003212 ! gustatory organ
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png xsd:anyURI
property_value: UBPROP:0000001 "A chemoreceptive organ.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010573", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000001 "One of a number of receptor cell nests located in the epithelium of the papillae of the tongue and in the soft palate, epiglottis, and pharynx that mediate the sense of taste. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/taste+bud"}
property_value: UBPROP:0000003 "Experients in amphibia have shown that an intrinsic feature of the pharyngeal endoderm is its ability to generate taste buds and this capacity must have been acquired by the endoderm at the origin of the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000130", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "In humans, saste buds may be found on the tongue, soft palatte, epiglottis and upper pharynx. In other species they may be found in more unusual places, such as the trunk, or on the barbels or fins of fish." xsd:string
property_value: UBPROP:0000011 "arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN:1607950324 (todo - request cell terms from CL)" xsd:string

[Term]
id: UBERON:0001750
name: lacrimal apparatus
namespace: uberon
def: "A network of orbital structures of the eye that secrete and drain tears from the surface of the eyeball into the nasal cavity; these parts include the lacrimal glands, lacrimal lake, lacrimal ducts, lacrimal canals, lacrimal sacs, nasolacrimal ducts, and lacrimal puncta." [MGI:anna]
subset: pheno_slim
subset: uberon_slim
synonym: "apparatus lacrimalis" EXACT LATIN [Wikipedia:Lacrimal_apparatus]
synonym: "lacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165]
synonym: "lacrymal system" EXACT [MGI:anna]
synonym: "nasolacrimal drainage system" RELATED [https://orcid.org/0000-0002-6601-2165]
synonym: "nasolacrimal system" RELATED [HPO:pr]
xref: EMAPA:35462
xref: FMA:55605
xref: GAID:901
xref: MA:0000274
xref: MESH:D007765
xref: NCIT:C32905
xref: UMLS:C0022903 {source="ncithesaurus:Lacrimal_Apparatus"}
xref: Wikipedia:Lacrimal_apparatus
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0000019 {source="FMA", source="MA"} ! camera-type eye
relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI
property_value: IAO:0000116 "TODO - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal" xsd:string
property_value: UBPROP:0000012 "this is an eye appendage in ncit, along with eyelid and eyebrow. in MA, part of eye surface part_of eye" xsd:string {external_ontology="ncit"}

[Term]
id: UBERON:0001756
name: middle ear
namespace: uberon
def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear]
subset: pheno_slim
subset: uberon_slim
synonym: "auris media" RELATED LATIN [Wikipedia:Middle_ear]
synonym: "auris media" RELATED [BTO:0002099]
xref: AAO:0011065
xref: BIRNLEX:1695
xref: BTO:0002099
xref: CALOHA:TS-2233
xref: EHDAA2:0001181
xref: EHDAA:5693
xref: EMAPA:17000
xref: EV:0100357
xref: FMA:56513
xref: GAID:165
xref: MA:0000253
xref: MAT:0000146
xref: MESH:D004432
xref: MIAA:0000146
xref: NCIT:C12274
xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA
xref: SCTID:181185000
xref: UMLS:C0013455 {source="BIRNLEX:1695"}
xref: UMLS:C0013455 {source="ncithesaurus:Middle_Ear"}
xref: UMLS:C1268972 {source="BIRNLEX:1695"}
xref: VHOG:0000312
xref: Wikipedia:Middle_ear
xref: XAO:0000191
relationship: part_of UBERON:0001690 ! ear
property_value: UBPROP:0000001 "The intermediate portion of the ear which consists of a small air-filled and membrane-lined chamber. It is lodged in the temporal bone and continues with the nasopharynx through the Eustachian tube. It is separated from the external ear by the tympanic membrane and from the inner ear by the fenestrae. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000312", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000312", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001757
name: pinna
namespace: uberon
def: "The part of the ear that projects from the head, connecting to the external acoustic meatus." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Pinna_(anatomy)]
subset: pheno_slim
subset: uberon_slim
synonym: "auricle" EXACT []
synonym: "auricle of ear" EXACT []
synonym: "auricle of external ear" EXACT []
synonym: "auricula" EXACT [Wikipedia:Auricula]
synonym: "auricula (auris externa)" EXACT []
synonym: "pinna of ear" EXACT []
synonym: "pinnae" RELATED PLURAL []
xref: EHDAA2:0001467
xref: EMAPA:17589
xref: EV:0100355
xref: FMA:56580
xref: galen:Auricle
xref: MA:0000259
xref: NCIT:C32165
xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA
xref: SCTID:421159007
xref: UMLS:C0928075 {source="ncithesaurus:Auricle"}
xref: VHOG:0000460
xref: Wikipedia:Pinna_(anatomy)
relationship: part_of UBERON:0001691 ! external ear
property_value: UBPROP:0000001 "The external expanded part of the ear characterized by a funnel-shaped structure through which the sound vibrations are received. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000460", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "Mammals have a third type of tympanic ear. An external flap, the auricle or pinna, helps funnel sound waves down the external acoustic meatus to the tympanic membrane.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000460", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.420", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "In various species, the pinna can also signal mood and radiate heat" xsd:string
property_value: UBPROP:0000009 "The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch)." xsd:string

[Term]
id: UBERON:0001766
name: anterior chamber of eyeball
namespace: uberon
def: "the space in the eye, filled with aqueous humor, and bounded anteriorly by the cornea and a small portion of the sclera and posteriorly by a small portion of the ciliary body, the iris, and part of the crystalline lens" [MESH:A09.371.060.067, MP:0005205]
subset: pheno_slim
synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709]
synonym: "anterior chamber of eye" EXACT []
synonym: "camera anterior" EXACT []
synonym: "camera anterior bulbi" RELATED [BTO:0002084]
synonym: "camera anterior bulbi oculi" RELATED LATIN [Wikipedia:Anterior_chamber_of_eyeball]
synonym: "camera oculi anterior" RELATED [BTO:0002084]
synonym: "eye anterior chamber" EXACT []
xref: BTO:0002084
xref: EHDAA2:0000129
xref: EHDAA:9033
xref: EMAPA:18231
xref: FMA:58078
xref: GAID:889
xref: MA:0000262
xref: MESH:D000867
xref: NCIT:C12667
xref: SCTID:181160009
xref: UMLS:C0003151 {source="ncithesaurus:Anterior_Chamber_of_the_Eye"}
xref: VHOG:0001431
xref: Wikipedia:Anterior_chamber_of_eyeball
is_a: UBERON:0006311 {source="FMA"} ! chamber of eyeball
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: UBPROP:0000001 "The part of the eyeball between the cornea and the iris, filled with aqueous humor. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001431", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/anterior+chamber"}
property_value: UBPROP:0000012 "space in EHDAA2 - consider adding Cavity of anterior chamber of eyeball" xsd:string {external_ontology="EHDAA2"}

[Term]
id: UBERON:0001767
name: posterior chamber of eyeball
namespace: uberon
def: "the ring-like space, filled with aqueous humor, between the iris/pupil anteriorly and the lens and ciliary body posteriorly" [ISBN:0-683-40008-8, MP:0005299]
comment: The posterior chamber should not be confused with vitreous chamber.
subset: pheno_slim
synonym: "c. posterior bulbi" RELATED LATIN [Wikipedia:Posterior_chamber_of_eyeball]
synonym: "camera oculi posterior" RELATED [BTO:0002086]
synonym: "camera posterior" EXACT []
synonym: "camera posterior bulbi" RELATED [BTO:0002086]
synonym: "eye posterior chamber" EXACT []
synonym: "posterior chamber of eye" EXACT []
xref: BTO:0002086
xref: FMA:58080
xref: MA:0002460
xref: NCIT:C12900
xref: OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA
xref: SCTID:362504004
xref: UMLS:C0229094 {source="ncithesaurus:Posterior_Chamber_of_the_Eye"}
xref: Wikipedia:Posterior_chamber_of_eyeball
is_a: UBERON:0006311 ! chamber of eyeball
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI

[Term]
id: UBERON:0001768
name: uvea
namespace: uberon
def: "the pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]." [MP:0005197, Wikipedia:Uvea]
subset: pheno_slim
subset: uberon_slim
synonym: "pars iridica retinae" RELATED [Wikipedia:Uvea]
synonym: "tunica vasculatis oculi" RELATED [Wikipedia:Uvea]
synonym: "tunica vasculosa bulbi" RELATED LATIN [Wikipedia:Uvea]
synonym: "tunica vasculosa of eyeball" EXACT [FMA:58103]
synonym: "uvea" EXACT [FMA:58103]
synonym: "uveal tract" EXACT [FMA:58103]
synonym: "vascular layer of eyeball" RELATED [FMA:58103]
xref: CALOHA:TS-2228
xref: EMAPA:35901
xref: FMA:58103
xref: GAID:912
xref: MA:0002480
xref: MESH:D014602
xref: NCIT:C12811
xref: SCTID:280648000
xref: UMLS:C0042160 {source="ncithesaurus:Uvea"}
xref: Wikipedia:Uvea
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png xsd:anyURI
property_value: IAO:0000116 "TODO - check child terms, isa vs partof. See also MA:0001284 ! tunica vasculosa plexus" xsd:string
property_value: RO:0002175 NCBITaxon:7955 {source="DOI:10.1177/0192623311409597"}
property_value: UBPROP:0000007 "uveal" xsd:string

[Term]
id: UBERON:0001769
name: iris
namespace: uberon
def: "the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye" [ISBN:0-683-40008-8, MP:0001322]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior uvea" RELATED []
synonym: "irides" RELATED PLURAL []
synonym: "irises" RELATED PLURAL [VHOG:0000101]
xref: AAO:0010347
xref: BTO:0000653
xref: CALOHA:TS-0491
xref: EFO:0004245
xref: EMAPA:19154
xref: EV:0100345
xref: FMA:58235
xref: GAID:917
xref: MA:0000273
xref: MESH:D007498
xref: NCIT:C12737
xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA
xref: SCTID:181164000
xref: TAO:0001238
xref: UMLS:C0022077 {source="ncithesaurus:Iris"}
xref: VHOG:0000101
xref: Wikipedia:Iris_(anatomy)
xref: XAO:0000185
xref: ZFA:0001238
relationship: part_of UBERON:0011892 ! anterior uvea
property_value: UBPROP:0000001 "The opaque muscular contractile diaphragm suspended in the aqueous humour in front of the lens of the eye. The organ is perforated by the pupil and continues peripherally with the ciliary body. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000101", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000101", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "iridial" xsd:string
property_value: UBPROP:0000008 "The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development [DOI:dx.doi.org/10.1006/dbio.1998.9019]" xsd:string

[Term]
id: UBERON:0001770
name: lacrimal canaliculus
namespace: uberon
def: "The part of the lacrimal duct that connects the lacrimal punctum to the lacrimal sac." [http://orcid.org/0000-0002-6601-2165]
subset: uberon_slim
synonym: "canaliculus lacrimalis" RELATED LATIN [Wikipedia:Lacrimal_canaliculi]
xref: EMAPA:37624 {source="MA:th"}
xref: FMA:58245
xref: MA:0001294
xref: NCIT:C32907
xref: SCTID:263348000
xref: UMLS:C0459631 {source="ncithesaurus:Lacrimal_Canaliculus"}
xref: Wikipedia:Lacrimal_canaliculi
relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system
property_value: IAO:0000116 "TODO - resolve lacrimal canaliculus vs lacrimal duct" xsd:string

[Term]
id: UBERON:0001771
name: pupil
namespace: uberon
def: "the central circular aperture of the iris through which light rays enter the eye" [ISBN:0-683-40008-8, MP:0001317]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "pupils" RELATED PLURAL [ZFA:0001283]
xref: AAO:0010351
xref: FMA:58252
xref: GAID:918
xref: MA:0001292
xref: MESH:D011680
xref: NCIT:C33429
xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA
xref: SCTID:35146001
xref: TAO:0001283
xref: UMLS:C0034121 {source="ncithesaurus:Pupil"}
xref: VHOG:0000116
xref: Wikipedia:Pupil
xref: XAO:0000283
xref: ZFA:0001283
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001769 ! iris
property_value: depicted:by Eye:iris.jpg xsd:anyURI
property_value: UBPROP:0000001 "The circular orifice in the centre of the iris, through which light enters into the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000116", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000116", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001772
name: corneal epithelium
namespace: uberon
def: "the smooth stratified squamous epithelium that covers the outer surface of the cornea" [MESH:A09.371.060.217.325, MGI:smb, MP:0006000]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior corneal epithelium" EXACT []
synonym: "anterior endothelium of cornea" RELATED [BTO:0000287]
synonym: "cornea epithelial tissue" EXACT [OBOL:automatic]
synonym: "cornea epithelium" EXACT [OBOL:automatic]
synonym: "e. anterius corneae" RELATED LATIN [Wikipedia:Corneal_epithelium]
synonym: "endothelium anterius corneae" RELATED [BTO:0000287]
synonym: "endothelium camerae anterioris bulbi" RELATED [BTO:0000287]
synonym: "endothelium corneale" RELATED [BTO:0000287]
synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic]
synonym: "epithelium anterius (cornea)" EXACT []
synonym: "epithelium anterius corneae" EXACT LATIN [FMA:58263, FMA:TA]
synonym: "epithelium corneæ anterior layer" EXACT []
synonym: "epithelium of cornea" EXACT []
synonym: "epithelium posterius corneae" RELATED [BTO:0000287]
synonym: "external epithelium of cornea" EXACT []
xref: BTO:0000287
xref: CALOHA:TS-0173
xref: EFO:0001917
xref: EHDAA2:0000319
xref: EMAPA:17162
xref: FMA:58263
xref: GAID:895
xref: MA:0001243
xref: MESH:D019573
xref: NCIT:C12928
xref: SCTID:368825001
xref: TAO:0002187
xref: UMLS:C0459875 {source="ncithesaurus:Corneal_Epithelium"}
xref: Wikipedia:Corneal_epithelium
xref: ZFA:0001683
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0000964 ! cornea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png xsd:anyURI
property_value: UBPROP:0000001 "Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002187", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"}
property_value: UBPROP:0000008 "In Humans: It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei" xsd:string
property_value: UBPROP:0000008 "In zebrafish: nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals" xsd:string

[Term]
id: UBERON:0001773
name: sclera
namespace: uberon
def: "Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]." [Wikipedia:Sclera, ZFIN:ZDB-PUB-050701-15]
comment: Disease notes: implicated in rheumatoid arthritis.
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "scleral capsule" RELATED []
xref: AAO:0010354
xref: BTO:0001606
xref: EMAPA:19027
xref: EV:0100342
xref: FMA:58269
xref: GAID:911
xref: MA:0000280
xref: MESH:D012590
xref: NCIT:C12784
xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA
xref: SCTID:181163006
xref: UMLS:C0036410 {source="ncithesaurus:Sclera"}
xref: VHOG:0001274
xref: Wikipedia:Sclera
xref: XAO:0000183
xref: ZFA:0005563
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0012430 {source="FMA"} ! tunica fibrosa of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: UBPROP:0000001 "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted][Wikipedia:Sclera]." xsd:string {source="Wikipedia:Sclera"}
property_value: UBPROP:0000001 "The tough, usually white, outer coat of the eyeball, covering all the posterior surface and continuous anteriorly with the cornea. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001274", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/sclera"}
property_value: UBPROP:0000007 "scleral" xsd:string
property_value: UBPROP:0000008 "in fish, reptiles and monotremes the connective tissue of the sclera is skeletal" xsd:string
property_value: UBPROP:0000010 "continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe." xsd:string
property_value: UBPROP:0000011 "Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]." xsd:string
property_value: UBPROP:0000011 "Seko et al demonstrate chondrogenic potential and identify this as connective tissue[DOI:10.1371/journal.pone.0003709]." xsd:string

[Term]
id: UBERON:0001775
name: ciliary body
namespace: uberon
def: "the thickened portion of the vascular tunic, which lies between the choroid and the iris, composed of ciliary muscle and ciliary processes" [ISBN:0-683-40008-8, MP:0005099, Wikipedia:Ciliary_body]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior uvea" RELATED []
synonym: "ciliary bodies" RELATED PLURAL [VHOG:0000102]
synonym: "corpus ciliare" RELATED LATIN [Wikipedia:Ciliary_body]
synonym: "corpus ciliare" RELATED [Wikipedia:Ciliary_body]
synonym: "ocular ciliary body" EXACT []
xref: AAO:0010341
xref: BTO:0000260
xref: CALOHA:TS-0694
xref: EMAPA:19065
xref: EV:0100346
xref: FMA:58295
xref: GAID:916
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1571
xref: MA:0000264
xref: MESH:D002924
xref: NCIT:C12345
xref: SCTID:263340007
xref: UMLS:C0008779 {source="ncithesaurus:Ciliary_Body"}
xref: VHOG:0000102
xref: Wikipedia:Ciliary_body
xref: XAO:0000186
relationship: part_of UBERON:0011892 ! anterior uvea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000102", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001776
name: optic choroid
namespace: uberon
def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [Wikipedia:Choroid]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "chorioid" RELATED [BTO:0001829]
synonym: "choroid" EXACT [MA:0000263]
synonym: "choroid coat" EXACT [Wikipedia:Choroid]
synonym: "choroidea" EXACT [Wikipedia:Choroid]
synonym: "choroidea" RELATED LATIN [Wikipedia:Choroid]
synonym: "eye choroid" EXACT [VHOG:0001568]
synonym: "optic choroid" RELATED [ZFA:0005229]
synonym: "posterior uvea" EXACT [Wikipedia:Uvea#Regions]
xref: BTO:0001829
xref: CALOHA:TS-2054
xref: EMAPA:19077
xref: EV:0100347
xref: FMA:58298
xref: GAID:913
xref: MA:0000263
xref: MESH:D002829
xref: NCIT:C12344
xref: SCTID:181172003
xref: TAO:0005229
xref: UMLS:C0008520 {source="ncithesaurus:Choroid"}
xref: VHOG:0001568
xref: Wikipedia:Choroid
xref: ZFA:0005229
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001768 {source="MA"} ! uvea
relationship: part_of UBERON:0019207 ! chorioretinal region
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: IAO:0000116 "check choroid vs choroid layer; check ZFA/TAO placement - no homology assertion in VHOG. Note this is entirely in the posterior region of eyeball in ZFA" xsd:string
property_value: UBPROP:0000007 "choroidal" xsd:string
property_value: UBPROP:0000012 "MP treats posterior uvea and optic choroid as distinct" xsd:string {external_ontology="MP"}

[Term]
id: UBERON:0001777
name: substantia propria of cornea
namespace: uberon
def: "the lamellated connective tissue of the cornea between the Bowman and Descemet membranes" [ISBN:0-683-40008-8, MESH:A09.371.060.217.228, MP:0005300]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "corneal stroma" EXACT [MA:0001245]
synonym: "stroma of cornea" EXACT []
synonym: "substantia propria" BROAD []
synonym: "substantia propria corneae" EXACT LATIN [FMA:58306, FMA:TA]
xref: CALOHA:TS-1138
xref: EFO:0002514
xref: EMAPA:17602
xref: FMA:58306
xref: GAID:893
xref: MA:0001245
xref: MESH:D003319
xref: NCIT:C12699
xref: SCTID:362511000
xref: TAO:0002189
xref: UMLS:C0010040 {source="ncithesaurus:Corneal_Stroma"}
xref: Wikipedia:Corneal_stroma
xref: ZFA:0001685
relationship: part_of UBERON:0000964 ! cornea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png xsd:anyURI
property_value: UBPROP:0000001 "Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"}
property_value: UBPROP:0000002 "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: develops_from tissue (UBERON:0000479)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO"}
property_value: UBPROP:0000002 "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: has_developmental_contribution_from tissue (UBERON:0000479)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002189", ontology="TAO"}

[Term]
id: UBERON:0001778
name: ciliary epithelium
namespace: uberon
def: "A double layer covering the ciliary body that produces aqueous humor." [Wikipedia:Ciliary_body#Ciliary_epithelium]
synonym: "ciliary body epithelium" EXACT [FMA:58464]
synonym: "epithelium of ciliary body" EXACT [FMA:58464]
synonym: "ocular ciliary epithelium" EXACT []
xref: BTO:0001770
xref: CALOHA:TS-0695
xref: EMAPA:35239
xref: FMA:58464
xref: MA:0001238
xref: NCIT:C32314
xref: SCTID:280870004
xref: UMLS:C0459736 {source="ncithesaurus:Ciliary_Epithelium"}
xref: Wikipedia:Ciliary_body#Ciliary_epithelium
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body

[Term]
id: UBERON:0001779
name: iris stroma
namespace: uberon
def: "The delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "iridial stroma" EXACT []
synonym: "stroma of iris" EXACT []
xref: EMAPA:35451
xref: FMA:58526
xref: MA:0002777
xref: SCTID:280882008
xref: Wikipedia:Iris_stroma
xref: ZFA:0005569
relationship: part_of UBERON:0001769 ! iris
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI

[Term]
id: UBERON:0001781
name: layer of retina
namespace: uberon
def: "Any of the layers that make up the retina[MP]." [MP:0003727]
subset: pheno_slim
subset: vertebrate_core
synonym: "retina layer" EXACT []
synonym: "retina neuronal layer" EXACT [MP:0006069]
synonym: "retinal layer" EXACT []
synonym: "retinal neuronal layer" EXACT [MP:0006069]
xref: AAO:0010353
xref: EMAPA:35742
xref: FMA:58617
xref: MA:0001319
xref: NCIT:C49328
xref: SCTID:280657006
xref: UMLS:C0459649 {source="ncithesaurus:Retina_Layer"}
xref: XAO:0000266
relationship: part_of UBERON:0000966 ! retina
property_value: UBPROP:0000012 "MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0001782
name: pigmented layer of retina
namespace: uberon
def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelium, retinal pigment" RELATED [BTO:0001177]
synonym: "outer pigmented layer of retina" EXACT []
synonym: "p. pigmentosa retinae" RELATED LATIN [Wikipedia:Retinal_pigment_epithelium]
synonym: "pigment epithelium of retina" EXACT []
synonym: "pigmented epithelium" RELATED []
synonym: "pigmented retina" RELATED []
synonym: "pigmented retina epithelium" EXACT []
synonym: "pigmented retinal epithelium" EXACT []
synonym: "PRE" RELATED []
synonym: "retinal pigment epithelium" EXACT [MP:0005201, Wikipedia:Retinal_pigment_epithelium]
synonym: "retinal pigment layer" RELATED [VHOG:0000536]
synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144]
synonym: "RPE" RELATED []
synonym: "stratum pigmentosa retinae" RELATED LATIN [Wikipedia:Retinal_pigment_epithelium]
synonym: "stratum pigmentosum (retina)" EXACT []
synonym: "stratum pigmentosum retinae" EXACT LATIN [FMA:58627, FMA:TA]
xref: AAO:0011096
xref: BTO:0001177
xref: CALOHA:TS-0869
xref: EHDAA2:0001465
xref: EHDAA:4765
xref: EMAPA:17172
xref: EMAPA:35738
xref: FMA:58627
xref: MA:0000279
xref: MA:0003173
xref: NCIT:C33470
xref: SCTID:280662007
xref: TAO:0000144
xref: UMLS:C0035322 {source="ncithesaurus:Retinal_Pigment_Epithelium"}
xref: VHOG:0000536
xref: Wikipedia:Retinal_pigment_epithelium
xref: XAO:0003217
xref: ZFA:0000144
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0015808 ! eye epithelium
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI
property_value: UBPROP:0000001 "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000144", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000001 "The monolayer of pigmented epithelium covering the neural retina.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011096", ontology="AAO", source="ZFA:0000144"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000536", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001783
name: optic disc
namespace: uberon
def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
synonym: "optic disk" EXACT [MESH:A08.800.800.120.680.660]
synonym: "optic disk" RELATED [Wikipedia:Optic_disc]
synonym: "optic nerve disc" RELATED [Wikipedia:Optic_disc]
synonym: "optic nerve head" RELATED [Wikipedia:Optic_disc]
synonym: "optic papilla" RELATED [Wikipedia:Optic_disc]
synonym: "physiologic blind spot" RELATED [Wikipedia:Optic_disc]
synonym: "physiologic blind spot of mariotte" RELATED [Wikipedia:Optic_disc]
xref: CALOHA:TS-2153
xref: EFO:0001974
xref: EHDAA2:0001307
xref: EHDAA:9077
xref: EMAPA:18238
xref: FMA:58634
xref: MA:0000278
xref: MESH:D009898
xref: NCIT:C12760
xref: SCTID:362518006
xref: UMLS:C0029127 {source="ncithesaurus:Optic_Disc"}
xref: VHOG:0000551
xref: Wikipedia:Optic_disc
relationship: part_of UBERON:0000966 ! retina
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png xsd:anyURI
property_value: UBPROP:0000001 "The small blind spot on the surface of the retina. It is the point where the fibers of the retina leave the eye and become part of the optic nerve. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/optic+disc"}
property_value: UBPROP:0000003 "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000551", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001786
name: fovea centralis
namespace: uberon
def: "A depression in the inner retinal surface within the macula lutea, the photoreceptor layer of which is entirely cones and which is specialized for maximum visual acuity" [http://orcid.org/0000-0002-6601-2165, Wikipedia:Fovea]
subset: pheno_slim
subset: uberon_slim
synonym: "centre of fovea" RELATED [BIRNLEX:2543]
synonym: "centre of macula" EXACT [BIRNLEX:2543]
synonym: "fovea" BROAD []
synonym: "fovea centralis in macula" EXACT [Wikipedia:Fovea_centralis_in_macula]
xref: BIRNLEX:2543
xref: CALOHA:TS-2055
xref: EMAPA:37589 {source="MA:th"}
xref: EV:0100350
xref: FMA:58658
xref: GAID:910
xref: MA:0001307
xref: MESH:D005584
xref: NCIT:C26463
xref: SCTID:264479005
xref: UMLS:C0016622 {source="BIRNLEX:2543"}
xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"}
xref: UMLS:C0450290 {source="BIRNLEX:2543"}
xref: VHOG:0001572
xref: Wikipedia:Fovea_centralis_in_macula
relationship: part_of UBERON:0000053 ! macula lutea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: UBPROP:0000001 "A small pit in the center of the macula lutea, the area of clearest vision, where the retinal layers are spread aside, and light falls directly on the cones. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/fovea"}
property_value: UBPROP:0000003 "Definition of fovea centralis should be considered here as 'an area centralis at the visual axis' (reference 1). There is an uncertaincy of the relation, because: 1.-The fovea first appeared in evolution in the temporal retina of fishes. Then, in birds, the nasal fovea and bifoveal system with nasal and temporal foveas developed. The fovea disappeared in primitive mammals, and reappeared in primates. A residue of the fovea is conserved in the visual streak, and the disappearance and reappearance of the fovea, in primitive mammals and primates respectively, correlates with degeneration and restoration of cone pigment genes in photoreceptors (reference 2). 2.-Many retinal features (foveas, trichromacy, midget pathways and associated cell types) appear specific to primates. This has led to investigations in parallel with other mammalian models such as cat or rabbit. Correlation of the results often proves to be difficult, since an evolutionary scenario with transitions between the mammalian models is largely lacking (reference 3).[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001572", ontology="VHOG", source="DOI:10.1017/S095252380623342X Ahnelt PK, Schubert C, Kübber-Heiss A, Schiviz A, Anger E, Independent variation of retinal S and M cone photoreceptor topographies: A survey of four families of mammals. Visual neuroscience (2006), http://www.ncbi.nlm.nih.gov/pubmed/11193946 Azuma N, Molecular cell biology on morphogenesis of the fovea and evolution of the central vision. Nihon Ganka Gakkai Zasshi (2000), DOI:10.1016/S1350-9462(00)00012-4 Ahnelt PK, Kolb H, The mammalian photoreceptor mosaic-adaptive design. Progress in Retinal and Eye Research (2000)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "foveal" xsd:string
property_value: UBPROP:0000008 "The fovea is also a pit in the surface of the retinas of many types of fish, reptiles, and birds. Among mammals, it is found only in simian primates. The retinal fovea takes slightly different forms in different types of animals. For example, in primates, cone photoreceptors line the base of the foveal pit, the cells that elsewhere in the retina form more superficial layers having been displaced away from the foveal region during late fetal and early postnatal life. Other foveae may show only a reduced thickness in the inner cell layers, rather than an almost complete absence" xsd:string
property_value: UBPROP:0000009 "high acuity vision" xsd:string

[Term]
id: UBERON:0001787
name: photoreceptor layer of retina
namespace: uberon
def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "layer of rods and cones" RELATED []
synonym: "retina photoreceptor layer" EXACT []
synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143]
synonym: "retinal photoreceptor layers" RELATED PLURAL [ZFA:0000143]
synonym: "stratum segmentorum externorum et internorum (retina)" EXACT []
synonym: "stratum segmentorum externorum et internorum retinae" EXACT LATIN [FMA:58680, FMA:TA]
xref: EMAPA:35686
xref: FMA:58680
xref: MA:0001308
xref: NCIT:C32954
xref: TAO:0000143
xref: UMLS:C0229206 {source="ncithesaurus:Layer_of_the_Rods_and_Cones"}
xref: VHOG:0001165
xref: Wikipedia:Layer_of_rods_and_cones
xref: XAO:0003215
xref: ZFA:0000143
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001165", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "we follow MA and ZFA in subdividing this into inner and outer segments" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0001788
name: outer limiting layer of retina
namespace: uberon
def: "The row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109, MP:0010236]
subset: pheno_slim
subset: vertebrate_core
synonym: "blood retina barrier" RELATED [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109]
synonym: "BRB" RELATED ABBREVIATION [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109]
synonym: "external limiting lamina of retina" EXACT []
synonym: "external limiting membrane" EXACT [ZFA:0001331]
synonym: "external limiting membrane of retina" EXACT []
synonym: "outer limiting membrane" EXACT [XAO:0003224]
synonym: "outer limiting membrane of retina" EXACT []
synonym: "outer limiting membranes" RELATED PLURAL [ZFA:0001331]
synonym: "retina external limiting lamina" EXACT []
synonym: "retina outer limiting membrane" EXACT [MP:0010236]
synonym: "stratum limitans externum (retina)" EXACT []
synonym: "stratum limitans externum retinae" EXACT LATIN [FMA:58683, FMA:TA]
xref: EMAPA:36518
xref: FMA:58683
xref: MA:0001309
xref: NCIT:C33235
xref: SCTID:280676008
xref: TAO:0001331
xref: UMLS:C1518685 {source="ncithesaurus:Outer_Limiting_Membrane"}
xref: Wikipedia:External_limiting_membrane
xref: XAO:0003224
xref: ZFA:0001331
is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina

[Term]
id: UBERON:0001789
name: outer nuclear layer of retina
namespace: uberon
def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464]
subset: pheno_slim
subset: vertebrate_core
synonym: "external nuclear layer" RELATED [BTO:0005600]
synonym: "layer of outer granules" RELATED [BTO:0005600]
synonym: "neural retina outer nuclear layer" EXACT [EMAPA:19157]
synonym: "ONL" NARROW []
synonym: "outer nuclear layer" BROAD []
synonym: "retina outer nuclear layer" EXACT []
synonym: "retina, outer nuclear layer" RELATED [BAMS:Ronl]
synonym: "retinal outer nuclear layer" EXACT []
synonym: "retinal outer nuclear layers" RELATED PLURAL [ZFA:0001464]
synonym: "stratum nucleare externum (retina)" EXACT []
synonym: "stratum nucleare externum retinae" EXACT LATIN [FMA:58684, FMA:TA]
xref: BAMS:Ronl
xref: BTO:0005600
xref: EMAPA:19157
xref: FMA:58684
xref: MA:0001315
xref: NCIT:C33236
xref: SCTID:280678009
xref: TAO:0001464
xref: UMLS:C0229210 {source="ncithesaurus:Outer_Nuclear_Layer_of_Retina"}
xref: VHOG:0001170
xref: Wikipedia:Outer_nuclear_layer
xref: XAO:0003219
xref: ZFA:0001464
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001170", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001790
name: outer plexiform layer of retina
namespace: uberon
def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330]
subset: pheno_slim
subset: vertebrate_core
synonym: "external plexiform layer" BROAD [BTO:0003174]
synonym: "OPL" NARROW ABBREVIATION []
synonym: "outer plexiform layer" EXACT [BTO:0003174]
synonym: "retina outer plexiform layer" EXACT []
synonym: "retina, outer plexiform layer" RELATED [BAMS:Ropl]
synonym: "retinal outer plexiform layer" EXACT []
synonym: "retinal outer plexiform layers" RELATED PLURAL [ZFA:0001330]
synonym: "stratum plexiforme externum" EXACT []
synonym: "stratum plexiforme externum retinae" EXACT LATIN [FMA:58685, FMA:TA]
xref: BAMS:Ropl
xref: BTO:0003174
xref: EMAPA:35744
xref: FMA:58685
xref: MA:0001316
xref: NCIT:C33237
xref: SCTID:280684007
xref: TAO:0001330
xref: UMLS:C0229217 {source="ncithesaurus:Outer_Plexiform_Layer"}
xref: VHOG:0001171
xref: Wikipedia:Outer_plexiform_layer
xref: XAO:0003218
xref: ZFA:0001330
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the photoreceptor cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001330", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001171", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001791
name: inner nuclear layer of retina
namespace: uberon
def: "Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia)." [NLX:93816]
comment: AO notes NLXANAT:1005031 appears to be retired
subset: pheno_slim
subset: vertebrate_core
synonym: "INL" NARROW []
synonym: "inner nuclear layer" EXACT []
synonym: "intermediate cell layer" EXACT [ZFA:0000119]
synonym: "layer of inner granules" RELATED [NLX:93816]
synonym: "neural retina inner nuclear layer" EXACT [EMAPA:19155]
synonym: "retina inner nuclear layer" EXACT []
synonym: "retina, inner nuclear layer" RELATED [BAMS:Rinl]
synonym: "retinal inner nuclear layer" EXACT []
synonym: "stratum nucleare internum" EXACT []
synonym: "stratum nucleare internum retinae" EXACT LATIN [FMA:58686, FMA:TA]
xref: BAMS:Rinl
xref: BTO:0003176
xref: EMAPA:19155
xref: FMA:58686
xref: MA:0001311
xref: NCIT:C32808
xref: NLX:93816
xref: NLXANAT:1005031
xref: SCTID:362520009
xref: TAO:0000119
xref: UMLS:C0229211 {source="ncithesaurus:Inner_Nuclear_Layer"}
xref: VHOG:0001167
xref: Wikipedia:Inner_nuclear_layer
xref: XAO:0003221
xref: ZFA:0000119
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
property_value: UBPROP:0000001 "The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells[BTO:0003176]." xsd:string {source="BTO:0003176"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001167", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001792
name: ganglionic layer of retina
namespace: uberon
def: "Cytoarchitectural layer of retina that contains somata of retinal ganglion cells, bounded by the stratum opticum and the inner plexiform layer" [NLX:36500]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "ganglion cell layer" BROAD [FMA:58687, ZFA:0000024]
synonym: "ganglionic cell layer of retina" EXACT [FMA:58687]
synonym: "GCL layer" EXACT []
synonym: "retina ganglion cell layer" EXACT []
synonym: "retina ganglion layer" EXACT []
synonym: "retina, ganglion cell layer" RELATED [BAMS:Rgcl]
synonym: "retinal ganglion cell layer" EXACT []
synonym: "retinal ganglion layer" EXACT [MP:0008510]
synonym: "RGC layer" EXACT []
synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687]
synonym: "stratum ganglionicum retinae" RELATED LATIN [Wikipedia:Ganglion_cell_layer]
xref: BAMS:Rgcl
xref: BTO:0003398
xref: CALOHA:TS-0867
xref: EMAPA:35739
xref: FMA:58687
xref: MA:0001310
xref: NCIT:C32652
xref: NLX:36500
xref: NLXANAT:1005030
xref: SCTID:280670002
xref: TAO:0000024
xref: VHOG:0001166
xref: Wikipedia:Ganglion_cell_layer
xref: XAO:0003223
xref: ZFA:0000024
is_a: UBERON:0001781 {source="FMA"} ! layer of retina
relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI
property_value: UBPROP:0000001 "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain[Wikipedia:Ganglion_cell_layer]." xsd:string {source="Wikipedia:Ganglion_cell_layer"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001166", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "NIFSTD class appears to be retired in nlx[http://neurolex.org/wiki/Nlx_anat_1005030]" xsd:string {external_ontology="NIF"}

[Term]
id: UBERON:0001793
name: nerve fiber layer of retina
namespace: uberon
alt_id: UBERON:0005888
def: "layer of the retina formed by expansion of the fibers of the optic nerve" [ISBN:0-914294-08-3, MGI:smb]
subset: pheno_slim
subset: vertebrate_core
synonym: "layer of nerve fibers of retina" EXACT []
synonym: "layer of nerve fibres of retina" EXACT []
synonym: "nerve fiber layer" BROAD [ZFA:0001619]
synonym: "neural retina nerve fibre layer" RELATED [EMAPA:18591]
synonym: "optic fiber layer" EXACT [DMBA:15652]
synonym: "optic fiber layer" RELATED [VHOG:0001169]
synonym: "optic fiber layers" RELATED PLURAL [TAO:0002212]
synonym: "retina nerve fiber layer" EXACT []
synonym: "stratum neurofibrarum (retina)" EXACT []
synonym: "stratum neurofibrarum retinae" EXACT LATIN [FMA:58688, FMA:TA]
synonym: "stratum neurofibrum retinae" RELATED LATIN [Wikipedia:Nerve_fiber_layer]
synonym: "stratum opticum of retina" EXACT []
xref: DMBA:15652
xref: EMAPA:18591
xref: FMA:58688
xref: MA:0001314
xref: SCTID:280671003
xref: TAO:0002212
xref: VHOG:0001169
xref: Wikipedia:Nervous_system_fiber_layer
xref: XAO:0003220
xref: ZFA:0001619
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001169", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001794
name: inner limiting layer of retina
namespace: uberon
def: "The row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235]
subset: pheno_slim
subset: vertebrate_core
synonym: "ILM" BROAD ABBREVIATION [ZFA:0001029]
synonym: "inner limiting membrane" EXACT [XAO:0003222]
synonym: "inner limiting membrane of retina" EXACT []
synonym: "inner limiting membranes" RELATED PLURAL [ZFA:0001029]
synonym: "internal limiting lamina of retina" EXACT []
synonym: "internal limiting membrane of retina" EXACT []
synonym: "retina inner limiting membrane" EXACT [MP:0010235]
synonym: "retina internal limiting lamina" EXACT []
synonym: "stratum limitans internum retinae" EXACT LATIN [FMA:58689, FMA:TA]
xref: EMAPA:36519
xref: FMA:58689
xref: MA:0001313
xref: NCIT:C32807
xref: SCTID:280677004
xref: TAO:0001029
xref: UMLS:C1512783 {source="ncithesaurus:Inner_Limiting_Membrane"}
xref: Wikipedia:Inner_limiting_membrane
xref: XAO:0003222
xref: ZFA:0001029
is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina
property_value: IAO:0000116 "TODO - check frog/fish" xsd:string
property_value: UBPROP:0000001 "Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf[ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3]." xsd:string {source="ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3"}

[Term]
id: UBERON:0001795
name: inner plexiform layer of retina
namespace: uberon
def: "Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)" [NLX:20558]
subset: pheno_slim
subset: vertebrate_core
synonym: "inner plexiform layer" RELATED [BTO:0003175]
synonym: "internal plexiform layer of retina" RELATED [NLXANAT:1005032]
synonym: "IPL" NARROW ABBREVIATION []
synonym: "retina inner plexiform layer" EXACT []
synonym: "retina, inner plexiform layer" RELATED [BAMS:Ripl]
synonym: "retinal inner plexiform layer" EXACT []
synonym: "retinal internal plexiform layer" RELATED [NLXANAT:1005032]
synonym: "stratum plexifome internum" RELATED [BTO:0003175]
synonym: "stratum plexiforme internum" EXACT [FMA:58704]
synonym: "stratum plexiforme internum retinae" RELATED LATIN [Wikipedia:Inner_plexiform_layer]
xref: BAMS:Ripl
xref: BTO:0003175
xref: EMAPA:35741
xref: FMA:58704
xref: MA:0001312
xref: NCIT:C32809
xref: NLX:20558
xref: NLXANAT:1005032
xref: SCTID:280682006
xref: TAO:0001329
xref: UMLS:C0229221 {source="ncithesaurus:Inner_Plexiform_Layer"}
xref: VHOG:0001168
xref: Wikipedia:Inner_plexiform_layer
xref: XAO:0003225
xref: ZFA:0001329
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png xsd:anyURI
property_value: UBPROP:0000001 "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO][GO:0010842]." xsd:string {source="GO:0010842"}
property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001329", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001168", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "http://neurolex.org/wiki/Nlx_anat_1005032 appears to be retired" xsd:string

[Term]
id: UBERON:0001796
name: aqueous humor of eyeball
namespace: uberon
def: "A thick watery refractive medium that fills the space between the lens and the cornea[WP]." [Wikipedia:Aqueous_humor]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "aqueous humor" EXACT []
synonym: "aqueous humour" EXACT [EHDAA2:0000139]
synonym: "humor aquosus" EXACT LATIN [FMA:58819, FMA:TA]
xref: EHDAA2:0000139
xref: EHDAA:10196
xref: EMAPA:18232
xref: ENVO:02000024
xref: FMA:58819
xref: GAID:890
xref: MA:0001236
xref: MESH:D001082
xref: NCIT:C13190
xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA
xref: SCTID:280587006
xref: UMLS:C0003662 {source="ncithesaurus:Aqueous_Humor"}
xref: VHOG:0000548
xref: Wikipedia:Aqueous_humor
xref: ZFA:0005564
is_a: UBERON:0006312 ! ocular refractive media
relationship: part_of UBERON:0001766 {notes="FMA def states A and P", notes="located_in in EHDAA2", source="VHOG"} ! anterior chamber of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: UBPROP:0000001 "The fluid produced by the ciliary process in the eye and occupying the anterior and posterior chambers. It provides nourishment for the lens and cornea and maintains the ocular pressure, and hence the optical integrity of the eyeball. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000548", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aqueous+humour"}
property_value: UBPROP:0000003 "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000548", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "FMA says A+P chambers, and MA states A chamber. ZFA states A chamber and tha it is produced primarily by dorsal ciliary epithelial cells.To be investigated across taxa." xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0001797
name: vitreous humor
namespace: uberon
def: "A transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina" [MP:0002699]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "humor vitreous" EXACT []
synonym: "humor vitreus" EXACT LATIN [FMA:58822, FMA:TA]
synonym: "humoral fluid" RELATED [BTO:0001451]
synonym: "ocular fluid" RELATED [BTO:0001451]
synonym: "portion of vitreous humor" BROAD [FMA:67388]
synonym: "vitreous" EXACT [ZFA:0005561]
synonym: "vitreous fluid" RELATED [BTO:0001451]
synonym: "vitreous humour" RELATED []
synonym: "whole portion of vitreous humor" EXACT [FMA:58822]
xref: BTO:0001451
xref: CALOHA:TS-0308
xref: EMAPA:17837
xref: ENVO:02000032
xref: EV:0100344
xref: FMA:58822
xref: MA:0001286
xref: NCIT:C13323
xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA
xref: UMLS:C0229096 {source="ncithesaurus:Vitreous_Humor"}
xref: VHOG:0000795
xref: Wikipedia:Vitreous_humour
xref: ZFA:0005561
is_a: UBERON:0006312 ! ocular refractive media
relationship: part_of UBERON:0001798 ! vitreous body
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI

[Term]
id: UBERON:0001798
name: vitreous body
namespace: uberon
def: "Gelatinous mucoid tissue that is composed of vitreous humor and fills the cavity behind the crystalline lens of the eye and in front of the retina[MP,modified]" [MP:0002699]
subset: pheno_slim
subset: uberon_slim
xref: CALOHA:TS-0308
xref: FMA:58827
xref: GAID:919
xref: MA:0002462
xref: MESH:A09.371.943
xref: NCIT:C33884
xref: SCTID:181170006
xref: UMLS:C0042905 {source="ncithesaurus:Vitreous_Body"}
relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: IAO:0000116 "distinciton between body and humor requires more work. These may be merged in future. Note that FMA includes the hyaloid canal as part of the vitreous body" xsd:string

[Term]
id: UBERON:0001799
name: vitreous chamber of eyeball
namespace: uberon
def: "The chamber in the eyeball enclosing the vitreous humor, bounded anteriorly by the lens and ciliary body and posteriorly by the posterior wall of the eyeball[BTO,modified]." [BTO:0002087]
subset: uberon_slim
synonym: "camera postrema" EXACT [FMA:58848]
synonym: "camera postrema bulbi oculi" EXACT LATIN [FMA:58848, FMA:TA]
synonym: "camera postrema bulbi oculi" EXACT [FMA:TA]
synonym: "camera vitrea" EXACT [FMA:58848]
synonym: "camera vitrea bulbi" EXACT [FMA:58848]
synonym: "postremal chamber" EXACT [FMA:58848]
synonym: "postremal chamber of eyeball" EXACT [FMA:58848]
synonym: "vitreous chamber" EXACT [FMA:58848]
xref: BTO:0002087
xref: EMAPA:37805 {source="MA:th"}
xref: FMA:58848
xref: MA:0002461
xref: NCIT:C33885
xref: UMLS:C0229095 {source="ncithesaurus:Vitreous_Chamber"}
xref: Wikipedia:Vitreous_chamber
is_a: UBERON:0006311 ! chamber of eyeball
relationship: part_of UBERON:0001802 ! posterior segment of eyeball

[Term]
id: UBERON:0001801
name: anterior segment of eyeball
namespace: uberon
def: "any of the parts of the eye that lie in front of, or ventral to, the lens (inclusive)" [ISBN:0-683-40008-8, MESH:A09.371.060, MP:0005193]
subset: pheno_slim
subset: vertebrate_core
synonym: "anterior eye segment" EXACT []
synonym: "anterior segment eye" EXACT [ZFA:0005566]
synonym: "anterior segment of eye" EXACT []
synonym: "anterior segment of the eye" EXACT []
synonym: "eye anterior segment" EXACT []
synonym: "segmentum anterius (bulbus oculi)" EXACT []
synonym: "segmentum anterius bulbi oculi" RELATED LATIN [Wikipedia:Anterior_segment_of_eyeball]
xref: EMAPA:36594
xref: FMA:58865
xref: MA:0002484
xref: MESH:D000869
xref: NCIT:C12668
xref: SCTID:280658001
xref: UMLS:C0003153 {source="ncithesaurus:Anterior_Eye_Segment"}
xref: Wikipedia:Anterior_segment_of_eyeball
xref: ZFA:0005566
relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png xsd:anyURI

[Term]
id: UBERON:0001802
name: posterior segment of eyeball
namespace: uberon
def: "any of the parts of the eye that lie in back of, or dorsal to, the lens (but not inclusive)" [ISBN:0-683-40008-8, MP:0005195]
subset: pheno_slim
subset: vertebrate_core
synonym: "eye posterior segment" EXACT []
synonym: "posterior eye segment" EXACT []
synonym: "posterior segment eye" EXACT [ZFA:0005567]
synonym: "posterior segment of eye" EXACT []
synonym: "posterior segment of the eye" EXACT []
synonym: "segmentum posterius (bulbus oculi)" EXACT []
synonym: "segmentum posterius bulbi oculi" RELATED LATIN [Wikipedia:Posterior_segment_of_eyeball]
xref: EMAPA:36595
xref: FMA:58868
xref: MA:0002485
xref: NCIT:C12906
xref: SCTID:280659009
xref: UMLS:C0278450 {source="ncithesaurus:Posterior_Eye_Segment"}
xref: Wikipedia:Posterior_segment_of_eyeball
xref: ZFA:0005567
relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI

[Term]
id: UBERON:0001803
name: epithelium of lens
namespace: uberon
def: "A layer of epithelial cells that is part of the eye." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
subset: vertebrate_core
synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lens" EXACT [OBOL:automatic]
synonym: "epithelium lentis" EXACT LATIN [FMA:58871, FMA:TA]
synonym: "epithelium of eye lens" EXACT [OBOL:automatic]
synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic]
synonym: "eye lens epithelium" EXACT [OBOL:automatic]
synonym: "lens epithelial tissue" EXACT [OBOL:automatic]
synonym: "lens epithelium" EXACT []
xref: BTO:0001873
xref: CALOHA:TS-0543
xref: EMAPA:32871
xref: FMA:58871
xref: MA:0001301
xref: SCTID:362523006
xref: TAO:0001326
xref: Wikipedia:Lens_(anatomy)#Lens_Epithelium
xref: XAO:0004094
xref: ZFA:0001326
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0000965 ! lens of camera-type eye
property_value: IAO:0000232 "this class is the superclass of the anterior epithelium and equatorial epithlium, although the term 'lens epithelium' may refer specifically to the former" xsd:string

[Term]
id: UBERON:0001804
name: capsule of lens
namespace: uberon
def: "the elastic, clear, membrane-like structure, that is outer most layer of the lens" [MGI:smb, MP:0003236, PMID:15483628]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "capsula lentis" EXACT LATIN []
synonym: "lens capsule" EXACT []
xref: EHDAA2:0000977
xref: EMAPA:18237
xref: FMA:58881
xref: MA:0001300
xref: NCIT:C32975
xref: SCTID:244500004
xref: UMLS:C0229232 {source="ncithesaurus:Lens_Capsule"}
xref: VHOG:0000550
xref: Wikipedia:Lens_(anatomy)#Lens_capsule
xref: ZFA:0005574
relationship: part_of UBERON:0000965 ! lens of camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI
property_value: UBPROP:0000001 "The transparent membrane which surrounds the lens of the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000550", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "(...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000550", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007), ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.424 and p.426 and p.429 and Figure 12-24", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000010 "synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs). [Wikipedia:Capsule_of_lens" xsd:string
property_value: UBPROP:0000012 "FMA classifies this is a capsule and hence an organ part. In contrast we classify this as acellular" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0001811
name: conjunctiva
namespace: uberon
def: "the mucous membrane that lines the inner surface of the eyelids and the front of the eyeball" [MESH:A09.371.060.200, MGI:csmith, MP:0001310]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
synonym: "conjunctivae" EXACT PLURAL [XAO:0000182]
synonym: "conjunctivas" EXACT PLURAL [XAO:0000182]
synonym: "tunica conjunctiva" EXACT LATIN [FMA:TA]
synonym: "wall of conjunctival sac" EXACT [FMA:59011]
xref: AAO:0010343
xref: BTO:0003415
xref: CALOHA:TS-2232
xref: EFO:0000374
xref: EMAPA:18233
xref: EV:0100340
xref: FMA:59011
xref: GAID:898
xref: MA:0000265
xref: MESH:A09.371.192
xref: NCIT:C12341
xref: SCTID:181161008
xref: UMLS:C0009758 {source="ncithesaurus:Conjunctiva"}
xref: Wikipedia:Conjunctiva
xref: XAO:0000182
relationship: part_of UBERON:0005908 {source="cjm"} ! conjunctival sac
relationship: part_of UBERON:0010409 {source="MA"} ! ocular surface region
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png xsd:anyURI
property_value: UBPROP:0000007 "conjunctival" xsd:string

[Term]
id: UBERON:0001812
name: palpebral conjunctiva
namespace: uberon
def: "A thin transparent mucous membrane that covers the posterior surface of the eyelids and is continuous with the bulbar conjunctiva at the conjunctival fornicies." [MP:0013394]
comment: lines the eyeballs
subset: pheno_slim
synonym: "conjunctival layer of eyelids" EXACT [MP:0013394]
synonym: "eyelid conjunctiva" RELATED []
synonym: "tarsal conjunctiva" EXACT [Wikipedia:Conjunctiva]
synonym: "tunica conjunctiva palpebrum" EXACT []
xref: FMA:59025
xref: MA:0001265
xref: NCIT:C12901
xref: SCTID:280666005
xref: UMLS:C0229274 {source="ncithesaurus:Palpebral_Conjunctiva"}
is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva
relationship: part_of UBERON:0001711 {source="FMA", source="MA"} ! eyelid

[Term]
id: UBERON:0001817
name: lacrimal gland
namespace: uberon
def: "The lacrimal glands are paired almond-shaped glands, located in or near the orbital region, that secrete the aqueous layer of the tear film.[WP]." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Lacrimal_gland]
subset: efo_slim
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
synonym: "glandula lacrimalis" EXACT LATIN [Wikipedia:Lacrimal_gland]
synonym: "glandula praeorbitalis" RELATED SENSU [NCBITaxon:91561, Wikipedia:Preorbital_gland]
synonym: "lacrimal-preorbital gland" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "preorbital gland" RELATED SENSU [NCBITaxon:91561, Wikipedia:Preorbital_gland]
synonym: "tear gland" RELATED [BTO:0000044]
xref: BTO:0000044
xref: CALOHA:TS-0512
xref: EFO:0001389
xref: EMAPA:35463
xref: EV:0100339
xref: FMA:59101
xref: MA:0001296
xref: NCIT:C12346
xref: SCTID:181147003
xref: UMLS:C0022907 {source="ncithesaurus:Lacrimal_Gland"}
xref: VHOG:0001476
xref: Wikipedia:Lacrimal_gland
xref: Wikipedia:Preorbital_gland
is_a: UBERON:0004859 ! eye gland
relationship: part_of UBERON:0001750 ! lacrimal apparatus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI
property_value: RO:0002161 NCBITaxon:8570 {source="PMID:7559104"}
property_value: UBPROP:0000001 "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands." xsd:string {source="FMA:59101"}
property_value: UBPROP:0000001 "The preorbital gland is a paired exocrine gland found in many species of hoofed animals, which is homologous to the lacrimal gland found in humans. These glands are trenchlike slits of dark blue to black, nearly bare skin extending from the medial canthus of each eye. They are lined by a combination of sebaceous and sudoriferous glands, and they produce secretions which contain pheromones and other semiochemical compounds. Ungulates frequently deposit these secretions on twigs and grass as a means of communication with other animals. The preorbital gland serves different roles in different species. Pheromone-containing secretions from the preorbital gland may serve to establish an animal's dominance (especially in preparation for breeding), mark its territory, or simply to produce a pleasurable sensation to the animal. Because of its critical role in scent marking, the preorbital gland is usually considered as a type of scent gland. A further function of these glands may be to produce antimicrobial compounds against skin pathogens. Antimicrobial compounds found in these glands may be biosynthesized by the animal itself, or by microorganisms that live in these glands[Wikipedia:Preorbital_gland]." xsd:string {source="Wikipedia:Preorbital_gland"}
property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI
property_value: UBPROP:0000008 "In humans, they are situated in the upper, outer portion of each orbit" xsd:string
property_value: UBPROP:0000008 "Innervation is highly complex and species-specific" xsd:string

[Term]
id: UBERON:0001818
name: tarsal gland
namespace: uberon
def: "A modified lobulated sebaceous gland at the rim of an eyelid, responsible for the supply of meibum." [ISBN:0123813611, PMID:20664693, Wikipedia:Meibomian_gland]
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
synonym: "gland of Meibom" EXACT []
synonym: "glandula tarsales" EXACT []
synonym: "Meibomian gland" EXACT [MA:0001249]
synonym: "palpebral gland" RELATED [MA:0001249]
synonym: "tarsoconjunctival gland" RELATED [BTO:0004165]
xref: BTO:0004165
xref: FMA:59104
xref: GAID:899
xref: MA:0001249
xref: MESH:D008537
xref: NCIT:C33075
xref: SCTID:280585003
xref: UMLS:C0025181 {source="ncithesaurus:Meibomian_Gland"}
xref: Wikipedia:Meibomian_gland
is_a: UBERON:0013231 ! sebaceous gland of eyelid
relationship: part_of UBERON:0004772 ! eyelid tarsus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png xsd:anyURI
property_value: UBPROP:0000011 "in mice, meibomian gland development is initiated around E18.5 with the formation of an epithelial placode and mesenchymal condensation, similar to that observed in hair follicle development; invagination of the epithelium into the developing mesenchyme then continues from birth to about P3 with initial branching of the epithelial cord detected at P5; by P8 the developing meibomian gland shows extensive ductal branching and the formation of distinct acini with mature meibomian glands present by P15 or eyelid opening[PMID:20664693]" xsd:string

[Term]
id: UBERON:0001819
name: palpebral fissure
namespace: uberon
def: "Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]." [Wikipedia:Palpebral_fissure]
subset: pheno_slim
subset: uberon_slim
synonym: "rima palpebrarum" RELATED LATIN [Wikipedia:Palpebral_fissure]
xref: FMA:59110
xref: MA:0001266
xref: SCTID:280576003
xref: Wikipedia:Palpebral_fissure
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png xsd:anyURI

[Term]
id: UBERON:0001822
name: orbital septum
namespace: uberon
def: "A membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum]
subset: organ_slim
subset: uberon_slim
synonym: "septum orbitale" RELATED LATIN [Wikipedia:Orbital_septum]
xref: EMAPA:37609 {source="MA:th"}
xref: FMA:59328
xref: MA:0001259
xref: SCTID:368859002
xref: Wikipedia:Orbital_septum
relationship: part_of UBERON:0004772 ! eyelid tarsus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/18/Gray891.png xsd:anyURI

[Term]
id: UBERON:0001823
name: nasal cartilage
namespace: uberon
def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage]
subset: pheno_slim
subset: uberon_slim
synonym: "cartilage of nose" EXACT []
xref: CALOHA:TS-0655
xref: EMAPA:37681 {source="MA:th"}
xref: FMA:59502
xref: MA:0001883
xref: NCIT:C49593
xref: SCTID:278941001
xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"}
xref: Wikipedia:Nasal_cartilage
relationship: part_of UBERON:0000004 ! nose
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI

[Term]
id: UBERON:0001826
name: nasal cavity mucosa
namespace: uberon
def: "The mucous membrane that lines the nasal cavity[MP]." [MP:0002238]
subset: pheno_slim
synonym: "mucosa of nose" EXACT [FMA:59684]
synonym: "mucous membrane of nose" EXACT [FMA:59684]
synonym: "nasal mucosa" RELATED []
synonym: "tunica mucosa nasalis" EXACT []
synonym: "tunica mucosa nasi" EXACT LATIN [FMA:59684, FMA:TA]
xref: BTO:0000912
xref: CALOHA:TS-0657
xref: EMAPA:36026
xref: FMA:59684
xref: GAID:302
xref: SCTID:310211009
xref: Wikipedia:Mucous_membrane_of_nose
relationship: part_of UBERON:0015788 ! olfactory apparatus chamber
property_value: IAO:0000116 "TODO - check lining vs part of. split olfactory and nasal mucosa?" xsd:string

[Term]
id: UBERON:0001839
name: bony labyrinth
namespace: uberon
def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth]
comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved.
subset: pheno_slim
subset: uberon_slim
synonym: "labyrinthus osseus" RELATED LATIN [Wikipedia:Bony_labyrinth]
synonym: "osseous labyrinth" EXACT []
synonym: "osseus labyrinth" RELATED []
xref: AAO:0011078
xref: BTO:0004685
xref: CALOHA:TS-2080
xref: EMAPA:36580
xref: EV:0100362
xref: FMA:60179
xref: MA:0000238
xref: NCIT:C33227
xref: SCTID:279727008
xref: UMLS:C0458699 {source="ncithesaurus:Osseous_Labyrinth"}
xref: VHOG:0001219
xref: Wikipedia:Bony_labyrinth
xref: XAO:0000193
relationship: part_of UBERON:0001846 {source="FMA"} ! internal ear
relationship: part_of UBERON:0004681 ! vestibular system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/22/Gray920.png xsd:anyURI

[Term]
id: UBERON:0001840
name: semicircular canal
namespace: uberon
def: "One of three half-circular, interconnected tubes located inside each ear[WP]." [Wikipedia:Semicircular_canal]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "canalis semicircularis" RELATED LATIN [Wikipedia:Semicircular_canal]
synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA]
synonym: "scc" RELATED [TAO:0000431]
synonym: "semicircular canals" EXACT PLURAL [TAO:0000431]
synonym: "semicircular ducts" RELATED PLURAL [XAO:0000198]
xref: AAO:0011098
xref: BTO:0003383
xref: CALOHA:TS-2164
xref: EMAPA:32832
xref: EV:0100365
xref: FMA:60186
xref: GAID:776
xref: MA:0000249
xref: MESH:D012665
xref: NCIT:C33527
xref: SCTID:279757004
xref: TAO:0000431
xref: UMLS:C0036622 {source="ncithesaurus:Semicircular_Canal"}
xref: VHOG:0001144
xref: Wikipedia:Semicircular_canal
xref: XAO:0000198
xref: ZFA:0000431
relationship: part_of UBERON:0001846 {source="MA"} ! internal ear
relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png xsd:anyURI
property_value: UBPROP:0000001 "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000431", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. These ducts are sometimes called canals, but technically the term semicircular canal applies to the spaces in the osseus labyrinth in which the semicircular ducts lie.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001144", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.414", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000009 "detects angular acceleration" xsd:string
property_value: UBPROP:0000012 "MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0001841
name: anterior semicircular canal
namespace: uberon
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior semicircular canals" RELATED []
synonym: "anterior semicircular duct" RELATED []
synonym: "canalis semircularis posterior" RELATED [AAO:0000058]
synonym: "rostral vertical semicircular canal" RELATED []
synonym: "superior semicircular canal" EXACT []
xref: AAO:0000058
xref: EHDAA2:0001959
xref: EHDAA:7802
xref: EMAPA:17299
xref: FMA:60187
xref: MA:0001207
xref: NCIT:C33695
xref: SCTID:279764002
xref: TAO:0000314
xref: UMLS:C1288332 {source="ncithesaurus:Superior_Semicircular_Canal"}
xref: Wikipedia:Anterior_semicircular_canal
xref: ZFA:0000314
is_a: UBERON:0001840 ! semicircular canal
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI
property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000314", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: develops_from anterior semicircular canal primordium (TAO:0000469)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000314", ontology="TAO"}
property_value: UBPROP:0000009 "detects angular acceleration" xsd:string

[Term]
id: UBERON:0001842
name: posterior semicircular canal
namespace: uberon
def: "The posterior semicircular canal is a part of the vestibular system and detects rotations of the head in the sagittal plane." [Wikipedia:Posterior_semicircular_canal]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "canalis semicircularis posterior" RELATED LATIN [Wikipedia:Posterior_semicircular_canal]
synonym: "caudal vertical semicircular canal" RELATED []
synonym: "pars superior of labyrinth" RELATED [AAO:0000420]
synonym: "posterior semicircular canals" RELATED []
synonym: "posterior semicircular duct" RELATED []
xref: AAO:0000420
xref: EHDAA2:0001489
xref: EHDAA:7796
xref: EMAPA:17296
xref: FMA:60190
xref: MA:0001209
xref: NCIT:C33378
xref: SCTID:279762003
xref: TAO:0000262
xref: UMLS:C0229454 {source="ncithesaurus:Posterior_Semicircular_Canal"}
xref: Wikipedia:Posterior_semicircular_canal
xref: ZFA:0000262
is_a: UBERON:0001840 ! semicircular canal
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI
property_value: IAO:0000116 "verify AAO" xsd:string
property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000262", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: develops_from posterior semicircular canal primordium (TAO:0000412)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000262", ontology="TAO"}
property_value: UBPROP:0000009 "detects angular acceleration" xsd:string

[Term]
id: UBERON:0001843
name: lateral semicircular canal
namespace: uberon
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "horizontal semicircular canal" RELATED []
synonym: "lateral semicircular canals" RELATED []
synonym: "lateral semicircular duct" RELATED []
xref: EHDAA2:0000920
xref: EHDAA:7790
xref: EMAPA:17821
xref: FMA:60193
xref: MA:0001208
xref: SCTID:279761005
xref: TAO:0000220
xref: Wikipedia:Lateral_semicircular_canal
xref: ZFA:0000220
is_a: UBERON:0001840 ! semicircular canal
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI
property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000220", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: develops_from lateral semicircular canal primordium (TAO:0000232)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000220", ontology="TAO"}
property_value: UBPROP:0000009 "detects angular acceleration" xsd:string

[Term]
id: UBERON:0001844
name: cochlea
namespace: uberon
def: "the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. [WP,modified]." [ISBN:0-683-40008-8, MP:0000031, Wikipedia:Cochlea]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "cochleae" RELATED PLURAL []
synonym: "cochlear duct" RELATED []
synonym: "cochlear organ" RELATED [BTO:0000267]
synonym: "cochlear part of bony labyrinth" EXACT []
synonym: "lagena" EXACT SENSU [XAO:0000197]
synonym: "lagenas" RELATED PLURAL [ZFA:0000374]
xref: AAO:0000253
xref: BIRNLEX:1190
xref: BTO:0000267
xref: CALOHA:TS-0151
xref: EFO:0000357
xref: EMAPA:17597
xref: EV:0100363
xref: FMA:60201
xref: GAID:724
xref: MA:0000240
xref: MAT:0000144
xref: MESH:D003051
xref: MIAA:0000144
xref: NCIT:C12395
xref: NIFSTD_RETIRED:birnlex_883
xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA
xref: SCTID:181187008
xref: TAO:0000374
xref: UMLS:C0009195 {source="BIRNLEX:1190"}
xref: UMLS:C0009195 {source="ncithesaurus:Cochlea"}
xref: UMLS:C1278895 {source="BIRNLEX:1190"}
xref: VHOG:0000691
xref: Wikipedia:Cochlea
xref: XAO:0000197
xref: ZFA:0000374
relationship: part_of UBERON:0001839 {source="FMA", source="VHOG", source="XAO", source="ncit"} ! bony labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg xsd:anyURI
property_value: UBPROP:0000001 "A spiral-shaped cavity in the petrous portion of the temporal bone of the inner ear, containing the nerve endings essential for hearing and forming one of the divisions of the labyrinth. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000691", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cochlea"}
property_value: UBPROP:0000003 "Because achieving high sensitivity is generally advantageous for auditory organs, it is not surprising that evidence for cochlear amplification is also seen in nonmammals. Spontaneous otoacoustic emissions (SOAEs) are narrow-band sound signals emitted from the inner ear, and it is generally assumed that their energy derives from the hair-cell molecular motors underlying cochlear amplification. However, all terrestrial vertebrates studied so far (including amphibians) show very similar SOAEs. The most parsimonious explanation for the universality of this phenomena is that some kind of amplifying mechanism is at least as old as land vertebrates themselves.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000691", ontology="VHOG", source="DOI:10.1016/S0959-4388(98)80033-0 Manley GA, Koeppl C, Phylogenetic development of the cochlea and its innervation. Current Opinion in Neurobiology (1998)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "cochlear" xsd:string
property_value: UBPROP:0000008 "The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: 'In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)'" xsd:string
property_value: UBPROP:0000008 "the cochlea is coiled in most mammals, monotremes being the exceptions." xsd:string
property_value: UBPROP:0000012 "sources vary in connection to bony labyrinth" xsd:string {external_ontology="XAO"}

[Term]
id: UBERON:0001845
name: perilymph
namespace: uberon
def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]" [FMA:FMA, Wikipedia:Perilymph]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "liquor cotunnii" RELATED LATIN [Wikipedia:Perilymph]
synonym: "perilympha" RELATED [Wikipedia:Perilymph]
xref: EMAPA:36549
xref: FMA:60908
xref: GAID:1185
xref: MA:0002529
xref: MESH:A12.207.571.678
xref: NCIT:C33297
xref: TAO:0005413
xref: UMLS:C0031059 {source="ncithesaurus:Perilymph"}
xref: Wikipedia:Perilymph
xref: ZFA:0005413
is_a: UBERON:0006586 ! otolymph

[Term]
id: UBERON:0001846
name: internal ear
namespace: uberon
def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "auris interna" RELATED [BTO:0000630]
synonym: "inner ear" EXACT []
synonym: "labyrinth" RELATED []
synonym: "otocyst" RELATED []
xref: AAO:0000238
xref: BIRNLEX:1196
xref: BTO:0000630
xref: CALOHA:TS-0478
xref: EFO:0001363
xref: EHDAA2:0000831
xref: EHDAA:504
xref: EMAPA:16194
xref: EV:0100361
xref: FMA:60909
xref: GAID:871
xref: galen:InnerEar
xref: MA:0000237
xref: MAT:0000145
xref: MESH:D007758
xref: MIAA:0000145
xref: NCIT:C12499
xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
xref: SCTID:181189006
xref: SCTID:304982002
xref: TAO:0000217
xref: UMLS:C0022889 {source="ncithesaurus:Internal_Ear"}
xref: UMLS:C0022889 {source="BIRNLEX:1196"}
xref: UMLS:C1268973 {source="BIRNLEX:1196"}
xref: VHOG:0000284
xref: Wikipedia:Internal_ear
xref: XAO:0000192
xref: ZFA:0000217
relationship: part_of UBERON:0001690 ! ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI
property_value: UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000217", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000284", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.366", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001847
name: lobule of pinna
namespace: uberon
def: "The soft lower part of the external ear, projecting below the antitragus." [Wikipedia:Ear_lobe]
subset: pheno_slim
subset: uberon_slim
synonym: "auricular lobule" EXACT []
synonym: "ear lobe" EXACT []
synonym: "ear lobule" RELATED []
synonym: "earlobe" EXACT []
synonym: "lobe of ear" EXACT []
synonym: "lobule of auricle" RELATED []
synonym: "lobule of auricle of ear" EXACT []
synonym: "lobulus auriculae" EXACT LATIN [FMA:60984, FMA:TA]
synonym: "pinna lobule" EXACT []
xref: FMA:60984
xref: MA:0002468
xref: NCIT:C32999
xref: SCTID:362544006
xref: UMLS:C0229315 {source="ncithesaurus:Lobule_of_the_Auricle"}
xref: Wikipedia:Ear_lobe
relationship: part_of UBERON:0001757 ! pinna
property_value: UBPROP:0000010 "The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function." xsd:string {source="WP,unvetted"}

[Term]
id: UBERON:0001848
name: auricular cartilage
namespace: uberon
def: "cartilage of the pinna and much of the external ear canal." [http://medical-dictionary.thefreedictionary.com/auricular+cartilage]
subset: pheno_slim
synonym: "cartilage of pinna" EXACT [FMA:61013]
synonym: "pinna cartilage" EXACT []
xref: EMAPA:35158
xref: FMA:61013
xref: MA:0001227
xref: SCTID:279627003
relationship: part_of UBERON:0001757 ! pinna
relationship: part_of UBERON:0001867 ! cartilage of external ear

[Term]
id: UBERON:0001849
name: membranous labyrinth
namespace: uberon
alt_id: UBERON:0010113
def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. The membranous labyrinth is lodged within the bony labyrinth and has the same general form; it is, however, considerably smaller and is partly separated from the bony walls by a quantity of fluid, the perilymph.[FMA, WP]" [FMA:61022, Wikipedia:Membranous_labyrinth]
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
synonym: "labyrinthus membranaceus" EXACT LATIN [Wikipedia:Membranous_labyrinth]
xref: AAO:0011060
xref: EHDAA2:0000899
xref: EHDAA:4698
xref: EMAPA:17815
xref: EV:0100367
xref: FMA:61022
xref: MA:0000242
xref: NCIT:C33090
xref: SCTID:263790009
xref: UMLS:C0458700 {source="ncithesaurus:Membranous_Labyrinth"}
xref: VHOG:0000729
xref: Wikipedia:Membranous_labyrinth
xref: XAO:0000194
relationship: part_of UBERON:0001846 {source="FMA", source="MA"} ! internal ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png xsd:anyURI
property_value: UBPROP:0000001 "A system of communicating epithelial sacs and ducts within the bony labyrinth, containing the endolymph. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000729", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/membranous+labyrinth"}
property_value: UBPROP:0000003 "The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000729", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.366", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the EMAPA term 'labyrinth' belong, we place them here for now" xsd:string {external_ontology="EMAPA"}

[Term]
id: UBERON:0001850
name: lacrimal drainage system
namespace: uberon
def: "A collection of channels that connects the conjunctival sac with the nasal cavity, encompassing the lacrimal ducts, the lacrimal sac and the naso-lacrimal duct." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
subset: uberon_slim
synonym: "lacrimal duct" RELATED [FMA:61063, MA:0001295]
synonym: "tear duct" RELATED [MA:0001295]
xref: EMAPA:19245
xref: FMA:61063
xref: MA:0001295
xref: SCTID:280426002
relationship: part_of UBERON:0001750 {source="FMA"} ! lacrimal apparatus
property_value: IAO:0000116 "TODO - resolve lacrimal canaliculus vs larcimal duct" xsd:string
property_value: RO:0002161 NCBITaxon:8459 {source="PMID:7559104"}
property_value: UBPROP:0000008 "chelonians lack a lacrimal duct, and lacrimal/harderian secretions remain in or spill from the conjunctival sac[PMID:7559104]" xsd:string

[Term]
id: UBERON:0001852
name: endolymph
namespace: uberon
def: "Transudate contained within the membranous labyrinth.[FMA]" [FMA:61112, Wikipedia:Endolymph]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "endolympha" RELATED LATIN [Wikipedia:Endolymph]
synonym: "endolympha" RELATED [Wikipedia:Endolymph]
synonym: "endolymphatic fluid" EXACT []
synonym: "Scarpa's fluid" RELATED [Wikipedia:Endolymph]
xref: EMAPA:36548
xref: FMA:61112
xref: GAID:1184
xref: MA:0002528
xref: MESH:A12.207.571.324
xref: NCIT:C32513
xref: TAO:0005414
xref: UMLS:C0014166 {source="ncithesaurus:Endolymph"}
xref: Wikipedia:Endolymph
xref: ZFA:0005414
is_a: UBERON:0006586 ! otolymph
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI
property_value: UBPROP:0000007 "otolymphic" xsd:string

[Term]
id: UBERON:0001853
name: utricle of membranous labyrinth
namespace: uberon
def: "the larger of the two otolith organs in the vestibule" [ISBN:0-8036-0655-9, MGI:smb, MP:0006090, PMID:15363417, Wikipedia:Utricle_(ear)]
comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "membranous labyrinth utricle" EXACT []
synonym: "utricle" EXACT []
synonym: "utriculus" EXACT [ZFA:0000700]
synonym: "utriculus (labyrinthus vestibularis)" EXACT []
xref: AAO:0000625
xref: AAO:0011109
xref: BTO:0001807
xref: EHDAA2:0002153
xref: EHDAA:4726
xref: EMAPA:17293
xref: EV:0100368
xref: FMA:61113
xref: MA:0000247
xref: NCIT:C33844
xref: SCTID:279817006
xref: TAO:0000700
xref: UMLS:C0042158 {source="ncithesaurus:Utricle"}
xref: VHOG:0000289
xref: Wikipedia:Utricle_(ear)
xref: XAO:0000195
xref: ZFA:0000700
is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ
property_value: UBPROP:0000001 "The portion of the membranous labyrinth of the ear into which the semicircular ducts find their outlet. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000289", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001854
name: saccule of membranous labyrinth
namespace: uberon
def: "the smaller of the two otolith organs in the vestibule" [ISBN:0-8036-0655-9, MGI:smb, MP:0006089, PMID:15363417, Wikipedia:Saccule]
comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "membranous labyrinth saccule" EXACT []
synonym: "saccule" EXACT []
synonym: "sacculus" EXACT [ZFA:0000428]
synonym: "sacculus" RELATED LATIN [Wikipedia:Saccule]
synonym: "sacculus (labyrinthus vestibularis)" EXACT []
xref: AAO:0000550
xref: BTO:0001805
xref: EHDAA2:0001769
xref: EHDAA:4712
xref: EMAPA:17290
xref: EV:0100369
xref: FMA:61116
xref: MA:0000246
xref: NCIT:C33503
xref: SCTID:279827000
xref: TAO:0000428
xref: UMLS:C0036029 {source="ncithesaurus:Saccule"}
xref: VHOG:0000374
xref: Wikipedia:Saccule
xref: XAO:0000196
xref: ZFA:0000428
is_a: UBERON:0002518 {source="Wikipedia", source="ZFA"} ! otolith organ
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI
property_value: UBPROP:0000001 "The most ventral chamber of the membranous labyrinth. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) .[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000374", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001855
name: cochlear duct of membranous labyrinth
namespace: uberon
def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct]
subset: pheno_slim
subset: uberon_slim
synonym: "cochlea duct" EXACT [BIRNLEX:2562]
synonym: "cochlear aqueduct" RELATED []
synonym: "cochlear duct" EXACT []
synonym: "ductus cochlearis" RELATED LATIN [BTO:0001692]
synonym: "ductus cochlearis" RELATED LATIN [Wikipedia:Cochlear_duct]
synonym: "membranous cochlea" RELATED [BTO:0001692]
synonym: "Reissner's canal" EXACT [FMA:61119]
synonym: "Reissners canal" EXACT [BIRNLEX:2562]
synonym: "scala media" RELATED [Wikipedia:Cochlear_duct]
synonym: "scala medias" EXACT [BIRNLEX:2562]
synonym: "scala of Loewenberg" RELATED [BTO:0001692]
xref: BIRNLEX:2562
xref: BTO:0001692
xref: CALOHA:TS-0152
xref: EHDAA2:0000262
xref: EHDAA:4718
xref: EMAPA:17598
xref: FMA:61119
xref: GAID:874
xref: MA:0000243
xref: MESH:D003053
xref: NCIT:C32335
xref: SCTID:279849006
xref: UMLS:C1281166 {source="BIRNLEX:2562"}
xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"}
xref: UMLS:C1323110 {source="BIRNLEX:2562"}
xref: VHOG:0000507
xref: Wikipedia:Cochlear_duct
relationship: part_of UBERON:0002499 {source="FMA", source="MA"} ! cochlear labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png xsd:anyURI
property_value: IAO:0000116 "TODO - check cochlear duct vs cochlear aqueduct vs scala media" xsd:string
property_value: UBPROP:0000001 "The coiled portion of the membranous labyrinth located inside the cochlea. It contains endolymph. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000507", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cochlear+duct"}
property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) In most groups of gnathostomes, the caudoventral evagination of the sacculus forms a small lagena, and in some diapsids and mammals the lagena develops into a longer duct. The lagena becomes greatly elongated in therians and coils to form the cochlear duct.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000507", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001856
name: semicircular duct
namespace: uberon
def: "Any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium" [http://dictionary.reference.com/browse/semicircular+duct]
synonym: "ductus semicirculares" RELATED PLURAL [FMA:71880, FMA:TA]
synonym: "membranous semicircular canal" RELATED [MA:0000251]
xref: EMAPA:32830
xref: FMA:61122
xref: MA:0000251
xref: NCIT:C33528
xref: SCTID:279833009
xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"}
xref: VHOG:0000238
relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal
relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth
property_value: IAO:0000116 "TODO - check canal vs duct. see Wikipedia:File:Gray927.png" xsd:string
property_value: UBPROP:0000003 "In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus (...); Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000238", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414 and p.58", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001857
name: anterior semicircular duct
namespace: uberon
synonym: "superior semicircular duct" RELATED [VHOG:0000246]
xref: EMAPA:37411 {source="MA:th"}
xref: FMA:61123
xref: MA:0001211
xref: SCTID:279836001
xref: VHOG:0000246
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001841 ! anterior semicircular canal
property_value: UBPROP:0000003 "Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000246", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.53 and p.413-414", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001858
name: posterior semicircular duct
namespace: uberon
def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously." [Wikipedia:Semicircular_canal]
subset: uberon_slim
xref: EMAPA:37413 {source="MA:th"}
xref: FMA:61126
xref: MA:0001214
xref: SCTID:279835002
xref: VHOG:0000248
xref: Wikipedia:Semicircular_canal
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001842 ! posterior semicircular canal
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png xsd:anyURI
property_value: UBPROP:0000003 "Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000248", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.53 and p.413-414", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000009 "detect vertical head movements" xsd:string {source="WP"}

[Term]
id: UBERON:0001859
name: lateral semicircular duct
namespace: uberon
subset: uberon_slim
synonym: "external semicircular duct" RELATED []
xref: EMAPA:37412 {source="MA:th"}
xref: FMA:61129
xref: MA:0001213
xref: SCTID:279834003
xref: VHOG:0000247
xref: Wikipedia:Lateral_semicircular_duct
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001843 ! lateral semicircular canal
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI
property_value: UBPROP:0000003 "Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.58] ; In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000247", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0001860
name: endolymphatic duct
namespace: uberon
def: "the small membranous canal, connecting with both saccule and utricle of the membranous labyrinth, passing through the aqueduct of vestibule, and terminating in the endolymphatic sac" [MGI:anna, MGI:smb, MP:0006011]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus endolymphaticus" EXACT LATIN [AAO:0000135]
synonym: "ductus endolymphaticus" RELATED LATIN [Wikipedia:Endolymphatic_duct]
xref: AAO:0000135
xref: EMAPA:18580
xref: FMA:61246
xref: GAID:886
xref: MA:0001187
xref: MESH:D004711
xref: SCTID:362567008
xref: TAO:0002194
xref: Wikipedia:Endolymphatic_duct
xref: ZFA:0001705
relationship: part_of UBERON:0001849 ! membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png xsd:anyURI
property_value: UBPROP:0000001 "Duct that is part of the inner ear and connects to the semicircular canals ending in a pouch.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002194", ontology="TAO", source="Wikipedia:Endolymphatic_duct"}
property_value: UBPROP:0000007 "endolymphatic" xsd:string

[Term]
id: UBERON:0001861
name: ductus reuniens
namespace: uberon
def: "The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity." [Wikipedia:Canalis_reuniens_of_Hensen]
synonym: "canal of Henson" RELATED [Wikipedia:Canalis_reuniens_of_Hensen]
synonym: "canalis reuniens" RELATED [Wikipedia:Canalis_reuniens_of_Hensen]
synonym: "canalis reuniens of Hensen" RELATED [Wikipedia:Canalis_reuniens_of_Hensen]
synonym: "Hensen duct" RELATED [Wikipedia:Canalis_reuniens_of_Hensen]
synonym: "Hensen's duct" RELATED [Wikipedia:Canalis_reuniens_of_Hensen]
xref: EMAPA:17287
xref: FMA:61252
xref: MA:0000244
xref: SCTID:279805009
xref: Wikipedia:Canalis_reuniens_of_Hensen
relationship: part_of UBERON:0001862 {source="EMAPA"} ! vestibular labyrinth

[Term]
id: UBERON:0001862
name: vestibular labyrinth
namespace: uberon
def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856]
subset: pheno_slim
synonym: "inner ear vestibular component" EXACT [EHDAA2:0000832]
synonym: "labyrinthus vestibularis" RELATED [BTO:0001856]
synonym: "vestibular apparatus" RELATED []
synonym: "vestibular component" BROAD []
xref: BTO:0001856
xref: CALOHA:TS-0479
xref: EHDAA2:0000832
xref: EHDAA:4706
xref: EMAPA:17286
xref: EMAPA:17815
xref: FMA:61255
xref: MA:0000245
xref: NCIT:C33871
xref: SCTID:181188003
xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"}
xref: Wikipedia:Inner_ear
xref: XAO:0004145
relationship: part_of UBERON:0001849 ! membranous labyrinth

[Term]
id: UBERON:0001863
name: scala vestibuli
namespace: uberon
def: "the division of the spiral canal of the cochlea lying on the apical side of the spiral lamina and vestibular membrane" [MGI:anna, MP:0003168]
subset: pheno_slim
subset: uberon_slim
xref: EMAPA:35753
xref: FMA:61269
xref: MA:0001206
xref: SCTID:362578000
xref: Wikipedia:Scala_vestibuli
is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel
relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png xsd:anyURI
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI

[Term]
id: UBERON:0001864
name: scala tympani
namespace: uberon
def: "the division of the spiral canal of the cochlea lying on the basal side of the spiral lamina" [MGI:anna, MP:0003167]
subset: pheno_slim
subset: uberon_slim
xref: EMAPA:35752
xref: FMA:61272
xref: GAID:879
xref: MA:0001205
xref: MESH:D012533
xref: SCTID:362579008
xref: Wikipedia:Scala_tympani
is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel
relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI

[Term]
id: UBERON:0001865
name: cartilaginous external acoustic tube
namespace: uberon
synonym: "cartilaginous external acoustic meatus" EXACT []
synonym: "cartilaginous part of external acoustic meatus" EXACT []
synonym: "external acoustic meatus cartilaginous part" EXACT []
synonym: "meatus acusticus externus cartilagineus" EXACT LATIN [FMA:61289, FMA:TA]
xref: EMAPA:37525 {source="MA:th"}
xref: FMA:61289
xref: MA:0001234
relationship: part_of UBERON:0001352 ! external acoustic meatus

[Term]
id: UBERON:0001867
name: cartilage of external ear
namespace: uberon
def: "A cartilage that is part of a external ear [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "external ear cartilage" EXACT []
xref: EMAPA:37706 {source="MA:th"}
xref: FMA:61339
xref: GAID:103
xref: MA:0001886
xref: MESH:A02.165.207
xref: NCIT:C49225
xref: UMLS:C0013445 {source="ncithesaurus:External_Ear_Cartilage"}
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0001908
name: optic tract
namespace: uberon
def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [NIFSTD, Wikipedia:Optic_tract, ZFIN:curator]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "optic lemniscus" EXACT []
synonym: "optic tracts" RELATED PLURAL [ZFA:0000252]
synonym: "tractus optici" RELATED LATIN [NeuroNames:460]
synonym: "tractus opticus" RELATED LATIN [Wikipedia:Optic_tract]
synonym: "visual pathway" RELATED [GAID:735]
xref: BAMS:opt
xref: BIRNLEX:1684
xref: BM:Tel-OT
xref: DHBA:10589
xref: DMBA:17785
xref: EMAPA:16678
xref: EMAPA:35617
xref: FMA:62046
xref: GAID:735
xref: HBA:9309
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=460 {source="BIRNLEX:1684"}
xref: MA:0001099
xref: MBA:125
xref: MESH:D014795
xref: NCIT:C33218
xref: SCTID:280952003
xref: TAO:0000252
xref: UMLS:C0152405 {source="BIRNLEX:1684"}
xref: UMLS:C0152405 {source="ncithesaurus:Optic_Tract"}
xref: VHOG:0001164
xref: Wikipedia:Optic_tract
xref: XAO:0004101
xref: ZFA:0000252
relationship: part_of UBERON:0002104 ! visual system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png xsd:anyURI
property_value: IAO:0000116 "relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'" xsd:string

[Term]
id: UBERON:0001927
name: medial geniculate body
namespace: uberon
def: "Nuclear complex of the thalamus situated on the caudal, subpial aspect of the thalamus (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 622)." [BIRNLEX:1670]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
synonym: "corpus geniculatum mediale" EXACT [BIRNLEX:1670]
synonym: "corpus geniculatus medialis" RELATED LATIN [NeuroNames:355]
synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body]
synonym: "medial geniculate complex" EXACT []
synonym: "medial geniculate complex of dorsal thalamus" RELATED [BAMS:MG]
synonym: "medial geniculate nuclei" EXACT []
synonym: "medial geniculate nucleus" EXACT []
synonym: "MGB" RELATED [BTO:0002674]
synonym: "MGN" BROAD ABBREVIATION [BIRNLEX:1670, NIFSTD:NeuroNames_abbrevSource]
synonym: "nuclei corporis geniculati medialis" EXACT LATIN [FMA:62211, FMA:TA]
synonym: "nucleus corporis geniculati medialis" RELATED LATIN [NeuroNames:355]
synonym: "nucleus geniculatus medialis" RELATED LATIN [NeuroNames:355]
xref: BAMS:C.gm.
xref: BAMS:MG
xref: BIRNLEX:1670
xref: BM:Die-Th-MG
xref: BTO:0002674
xref: DHBA:10434
xref: DMBA:16462
xref: EFO:0001968
xref: EMAPA:35546
xref: EV:0100218
xref: FMA:62211
xref: HBA:12926
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=355 {source="BIRNLEX:1670"}
xref: MA:0000870
xref: MBA:475
xref: NCIT:C32843
xref: SCTID:362378001
xref: UMLS:C0086596 {source="BIRNLEX:1670"}
xref: UMLS:C0086596 {source="ncithesaurus:Internal_Geniculate_Body"}
xref: Wikipedia:Medial_geniculate_body
relationship: part_of UBERON:0002105 {source="NIFSTD"} ! vestibulo-auditory system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png xsd:anyURI

[Term]
id: UBERON:0001985
name: corneal endothelium
namespace: uberon
def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "cornea endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of cornea" EXACT [OBOL:automatic]
synonym: "epithelium posterius corneae" RELATED LATIN [Wikipedia:Corneal_endothelium]
xref: CALOHA:TS-0172
xref: EMAPA:35935
xref: FMA:63882
xref: GAID:891
xref: MA:0001242
xref: MESH:D004728
xref: NCIT:C12707
xref: SCTID:368827009
xref: TAO:0002186
xref: UMLS:C0014259 {source="ncithesaurus:Corneal_Endothelium"}
xref: Wikipedia:Corneal_endothelium
xref: ZFA:0001687
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0000964 ! cornea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png xsd:anyURI

[Term]
id: UBERON:0001997
name: olfactory epithelium
namespace: uberon
alt_id: UBERON:0004853
def: "A sensory epithelium inside the nasal cavity that is responsible for detecting odors[WP]." [Wikipedia:Olfactory_epithelium]
comment: Genes: V1Rs, Trpc2 present in lamprey
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "main olfactory epithelium" EXACT [NCBIBook:NBK55971]
synonym: "MOE" RELATED ABBREVIATION [NCBIBook:NBK55971]
synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325]
synonym: "nasal epithelium" RELATED []
synonym: "nasal sensory epithelium" RELATED []
synonym: "olfactory membrane" EXACT [BIRNLEX:2703]
synonym: "olfactory sensory epithelium" EXACT []
synonym: "pseudostratified main olfactory epithelium" RELATED [http://www.ncbi.nlm.nih.gov/books/NBK55971/]
synonym: "sensory olfactory epithelium" EXACT []
xref: AAO:0010158
xref: BIRNLEX:2703
xref: BTO:0000108
xref: CALOHA:TS-0703
xref: EFO:0001972
xref: EHDAA2:0001228
xref: EHDAA:4774
xref: EMAPA:17606
xref: FMA:64803
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1900 {source="BIRNLEX:2703"}
xref: MA:0001325
xref: MAT:0000445
xref: NCIT:C33203
xref: SCTID:37623003
xref: TAO:0000554
xref: UMLS:C0599332 {source="BIRNLEX:2703"}
xref: UMLS:C0599332 {source="ncithesaurus:Olfactory_Epithelium"}
xref: VHOG:0000985
xref: Wikipedia:Olfactory_epithelium
xref: ZFA:0000554
is_a: UBERON:0005384 ! nasal cavity epithelium
relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png xsd:anyURI
property_value: UBPROP:0000001 "Sensory lining of the medial wall, roof and anterior aspects of the main olfactory cavity (cavum principale).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO", source="AAO:DSM"}
property_value: UBPROP:0000002 "relationship loss: part_of principal cavity (AAO:0000992)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010158", ontology="AAO"}

[Term]
id: UBERON:0002104
name: visual system
namespace: uberon
alt_id: UBERON:0007036
def: "The sensory system subserving the sense of vision." [NIFSTD:FMAID_7191]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "photosensory system" EXACT [BILA:0000140]
synonym: "visual organ system" EXACT []
xref: AAO:0000632
xref: BILA:0000140
xref: EMAPA:36003
xref: FMA:7191
xref: http://uri.neuinfo.org/nif/nifstd/FMAID_7191
xref: MA:0002444
xref: NCIT:C12888
xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
xref: SCTID:281831001
xref: TAO:0001127
xref: UMLS:C0587900 {source="ncithesaurus:Visual_System"}
xref: Wikipedia:Visual_system
xref: XAO:0003198
xref: ZFA:0001127
is_a: UBERON:0001032 ! sensory system
property_value: UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000632", ontology="AAO", source="AAO:EJS"}

[Term]
id: UBERON:0002105
name: vestibulo-auditory system
namespace: uberon
def: "Sensory system responsible for the perception of spatial orientation and auditory stimuli." [ZFA:0001138]
subset: functional_classification
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "auditory organ system" EXACT []
synonym: "auditory system" RELATED []
synonym: "auditory/vestibular system" RELATED []
synonym: "vestibuloauditory system" EXACT []
synonym: "vestibuloauditory system" RELATED []
xref: AAO:0000631
xref: EMAPA:36002
xref: EMAPA:37985 {source="MA:th"}
xref: FMA:78500
xref: TAO:0001138
xref: XAO:0003195
xref: ZFA:0001138
is_a: UBERON:0001032 ! sensory system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg xsd:anyURI
property_value: UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000631", ontology="AAO", source="AAO:EJS"}

[Term]
id: UBERON:0002109
name: pair of nares
namespace: uberon
def: "Pair of nostrils." [Wikipedia:Nares]
subset: uberon_slim
synonym: "nares" RELATED []
synonym: "nares set" EXACT []
synonym: "nostrils" EXACT []
synonym: "pair of nostrils" EXACT []
synonym: "set of nares" RELATED [FMA:72005]
xref: FMA:72005
xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA
xref: Wikipedia:Nares
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000004 ! nose
property_value: RO:0002161 NCBITaxon:7745 {source="http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html"}
property_value: UBPROP:0000012 "this is a 'set of anatomical planes' in FMA" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0002128
name: superior olivary complex
namespace: uberon
def: "A a collection of brainstem nuclei that functions in multiple aspects of hearing and is an important component of the ascending and descending auditory pathways of the auditory system." [ISBN:0-19-502694-2, Wikipedia:Superior_olivary_complex]
subset: uberon_slim
synonym: "nucleus olivaris superior" EXACT LATIN [FMA:72247, FMA:TA]
synonym: "regio olivaris superioris" RELATED LATIN [NeuroNames:569]
synonym: "superior olivary nuclei" EXACT [FMA:72247]
synonym: "superior olivary nucleus" RELATED INCONSISTENT [FMA:72247]
synonym: "superior olivary nucleus (Barr & Kiernan)" RELATED [NeuroNames:569]
synonym: "superior olive" RELATED INCONSISTENT [FMA:72247, ISBN:0-19-502694-2]
xref: BAMS:SOC
xref: BIRNLEX:1307
xref: DHBA:12462
xref: EMAPA:35840
xref: EV:0100263
xref: FMA:72247
xref: HBA:9177
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=569 {source="BIRNLEX:1307"}
xref: MA:0001026
xref: MBA:398
xref: UMLS:C0175427 {source="BIRNLEX:1307"}
xref: VHOG:0001381
xref: Wikipedia:Superior_olivary_complex
relationship: part_of UBERON:0016490 ! auditory system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png xsd:anyURI
property_value: UBPROP:0000008 "In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO:0021718]" xsd:string
property_value: UBPROP:0000008 "The SOC displays a significant interspecies variation, being largest in bats and rodents and smaller in primates." xsd:string

[Term]
id: UBERON:0002162
name: area postrema
namespace: uberon
def: "A small, rounded eminence on each side of the fourth ventricle, which receives nerve fibers from the solitary nucleus , spinal cord, and adjacent areas of the medulla. The area postrema lies outside the blood-brain barrier and its functions include acting as an emetic chemoreceptor." [MESH:A08.186.211.132.810.406.286, Wikipedia:Area_postrema]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "AP" BROAD ABBREVIATION [BIRNLEX:2636, NIFSTD:NeuroNames_abbrevSource]
synonym: "chemoreceptor trigger zone" RELATED [NeuroNames:772]
xref: BAMS:AP
xref: BIRNLEX:2636
xref: BTO:0003425
xref: DHBA:12807
xref: EMAPA:35143
xref: FMA:72607
xref: GAID:591
xref: HBA:9522
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=772 {source="BIRNLEX:2636"}
xref: MA:0001034
xref: MBA:207
xref: MESH:D031608
xref: SCTID:369039005
xref: TAO:0005146
xref: UMLS:C0228530 {source="BIRNLEX:2636"}
xref: UMLS:C1289468 {source="BIRNLEX:2636"}
xref: Wikipedia:Area_postrema
xref: ZFA:0005146
is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png xsd:anyURI
property_value: UBPROP:0000001 "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005146", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000009 "vomiting center in humans" xsd:string {source="WP"}

[Term]
id: UBERON:0002203
name: vasculature of eye
namespace: uberon
def: "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726, OBOL:automatic]
subset: pheno_slim
subset: vertebrate_core
synonym: "eye vascular network" EXACT [OBOL:automatic]
synonym: "eye vasculature" RELATED []
synonym: "ocular blood vessel" EXACT [ZFA:0007057]
synonym: "ocular vasculature" EXACT []
synonym: "optic vasculature" RELATED []
synonym: "vascular network of eye" EXACT [OBOL:automatic]
xref: FMA:74743
xref: SCTID:123846009
xref: TAO:0007057
xref: ZFA:0007057
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: UBPROP:0000012 "not part of the eye in ZFA. Note this changed to a blood vessel in ZFA" xsd:string {external_ontology="ZFA"}

[Term]
id: UBERON:0002212
name: macula of saccule of membranous labyrinth
namespace: uberon
def: "the oval neuroepithelial sensory receptor in the anterior wall of the saccule; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies" [MGI:anna, MP:0004330]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "macula of saccule" EXACT []
synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "macula saccule" EXACT [ZFA:0007000]
synonym: "macula sacculi" EXACT LATIN [FMA:74944, FMA:TA]
synonym: "macula sacculi" RELATED LATIN [Wikipedia:Macula_of_saccule]
synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic]
synonym: "saccular macula" EXACT [ZFA:0007000]
synonym: "saccular macula of membranous labyrinth" EXACT []
synonym: "saccular maculs" RELATED []
synonym: "saccule macula" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic]
xref: EMAPA:35534
xref: FMA:74944
xref: MA:0001201
xref: NCIT:C33045
xref: SCTID:362572004
xref: TAO:0007000
xref: UMLS:C0229468 {source="ncithesaurus:Macula_of_Saccule"}
xref: Wikipedia:Macula_of_saccule
xref: XAO:0004136
xref: ZFA:0007000
is_a: UBERON:0000054 ! macula
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth

[Term]
id: UBERON:0002214
name: macula of utricle of membranous labyrinth
namespace: uberon
def: "the neuroepithelial sensory receptor in the inferolateral wall of the utricle; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies; normally sensitive to linear acceleration in the longitudinal axis of the body and to gravitational influences" [MGI:anna, MP:0004333]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "macula of utricle" EXACT []
synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "macula utricle" EXACT [ZFA:0000030]
synonym: "macula utriculi" EXACT LATIN [FMA:74960, FMA:TA]
synonym: "macula utriculi" RELATED LATIN [Wikipedia:Macula_of_utricle]
synonym: "maculae utricle" RELATED PLURAL [ZFA:0000030]
synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic]
synonym: "utricle macula" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic]
synonym: "utricular macula" RELATED []
synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic]
xref: EFO:0003474
xref: EMAPA:35535
xref: FMA:74960
xref: MA:0001203
xref: NCIT:C33046
xref: SCTID:362568003
xref: TAO:0000030
xref: UMLS:C0229451 {source="ncithesaurus:Macula_of_Utricle"}
xref: Wikipedia:Macula_of_utricle
xref: ZFA:0000030
is_a: UBERON:0000054 ! macula
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI

[Term]
id: UBERON:0002218
name: tympanic ring
namespace: uberon
def: "A C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mammals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]." [MP:0000030, PMID:11237469]
comment: Gene notes: Gsc and Prx1 are essential for tympanic ring development
subset: pheno_slim
synonym: "ectotympanic ring" RELATED [Wikipedia:Ectotympanic_ring]
synonym: "os tympanicum" RELATED [EMAPA:19197]
synonym: "tympanic annulus" RELATED []
synonym: "tympanic anulus" RELATED []
synonym: "tympanic membrane annulus" RELATED []
xref: AAO:0000615
xref: EMAPA:19197
xref: MA:0001225
xref: SCTID:95952001
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
property_value: IAO:0000116 "check amphibians" xsd:string
property_value: UBPROP:0000001 "Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000615", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000002 "relationship loss: part_of plectral apparatus (AAO:0000443)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000615", ontology="AAO"}
property_value: UBPROP:0000012 "in AAO 'Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane'." xsd:string {external_ontology="AAO"}
property_value: UBPROP:0000012 "in FMA, the tympanic ring is an anatomical line. Howevever http://www.ncbi.nlm.nih.gov/pubmed/11237469 states: 'the tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane'." xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0002219
name: subfornical organ
namespace: uberon
def: "Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF)." [NLXANAT:100314, Wikipedia:Subfornical_organ]
subset: uberon_slim
synonym: "organum subfornicale" RELATED LATIN [Wikipedia:Subfornical_organ]
xref: BAMS:SFO
xref: DHBA:12104
xref: EMAPA:35830
xref: FMA:75260
xref: GAID:795
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=454
xref: MA:0000940
xref: MBA:338
xref: MESH:A08.713.840
xref: NLXANAT:100314
xref: Wikipedia:Subfornical_organ
is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png xsd:anyURI
property_value: UBPROP:0000009 "induces drinking behavior after stimulation with angiotensin II[MESH]." xsd:string

[Term]
id: UBERON:0002223
name: endolymphatic sac
namespace: uberon
def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [Wikipedia:Endolymphatic_sac]
subset: pheno_slim
subset: uberon_slim
synonym: "saccus endolymphaticus" EXACT [AAO:0000551]
synonym: "saccus endolymphaticus" RELATED LATIN [Wikipedia:Endolymphatic_sac]
xref: AAO:0000551
xref: EHDAA2:0000441
xref: EHDAA:7761
xref: EMAPA:17593
xref: FMA:75639
xref: GAID:887
xref: MA:0001188
xref: MESH:D004712
xref: SCTID:279810008
xref: VHOG:0000791
xref: Wikipedia:Endolymphatic_sac
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001846 {source="VHOG"} ! internal ear
property_value: IAO:0000116 "EHDAA2 structure is embryonic" xsd:string
property_value: UBPROP:0000001 "The blind extremity of the endolymphatic duct. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000791", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/endolymphatic+sac"}
property_value: UBPROP:0000003 "Many adult anamniotes have an endolymphatic duct that opens onto the surface of the head. In other vertebrates, it either is lost or forms a small, deeply seated endolymphatic sac.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000791", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.413-414 and Figure 12-15", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0002226
name: basilar membrane of cochlea
namespace: uberon
def: "A stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [Wikipedia:Basilar_membrane]
subset: pheno_slim
subset: uberon_slim
synonym: "basilar membrane" EXACT [MA:0001190]
synonym: "lamina basilaris ductus cochlearis" RELATED LATIN [Wikipedia:Basilar_membrane]
xref: BIRNLEX:2521
xref: EMAPA:35166
xref: FMA:75706
xref: GAID:872
xref: MA:0001190
xref: MESH:D001489
xref: NCIT:C13179
xref: SCTID:362574003
xref: UMLS:C0004816 {source="BIRNLEX:2521"}
xref: UMLS:C0004816 {source="ncithesaurus:Basilar_Membrane"}
xref: Wikipedia:Basilar_membrane
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png xsd:anyURI
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9b/Organ_of_corti.svg xsd:anyURI

[Term]
id: UBERON:0002227
name: spiral organ of cochlea
namespace: uberon
def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
synonym: "auditory papilla" RELATED SENSU [ISBN:9780387714691]
synonym: "auditory papillae" RELATED PLURAL [ISBN:9780387714691]
synonym: "basilar papilla" RELATED SENSU [XAO:0003145]
synonym: "cochlear spiral organ" EXACT []
synonym: "Corti's organ" RELATED [BTO:0001691]
synonym: "organ of Corti" RELATED []
synonym: "organum spirale" EXACT LATIN [Wikipedia:Organ_of_Corti]
synonym: "papilla basilaris" RELATED SENSU [XAO:0003145]
synonym: "spiral organ" EXACT []
synonym: "spiral organ of Corti" EXACT []
xref: BIRNLEX:2526
xref: BTO:0001691
xref: CALOHA:TS-0717
xref: EFO:0001364
xref: EMAPA:19061
xref: EV:0100364
xref: FMA:75715
xref: GAID:772
xref: MA:0001193
xref: NCIT:C33223
xref: ncithesaurus:Spiral_Organ_of_Corti
xref: SCTID:279841009
xref: UMLS:C0029207 {source="ncithesaurus:Organ_of_Corti"}
xref: UMLS:C0029207 {source="BIRNLEX:2526"}
xref: VHOG:0001567
xref: Wikipedia:Organ_of_Corti
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg xsd:anyURI
property_value: RO:0002174 NCBITaxon:8292
property_value: RO:0002174 NCBITaxon:8457
property_value: RO:0002175 NCBITaxon:40674
property_value: UBPROP:0000003 "The auditory hair cells in tetrapods are located in the inner ear in a structure known as the basilar papilla. In mammals this structure (along with some related structure) is called the organ of Corti.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001567", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.33", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "in basal early lizards, organized into 3 tonotopically organized areas, the outer areas lack a tectorial membrane[ISBN:9780387714691]" xsd:string

[Term]
id: UBERON:0002232
name: olfactory gland
namespace: uberon
def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [Wikipedia:Olfactory_glands]
subset: organ_slim
subset: pheno_slim
synonym: "Bowman's gland" RELATED []
synonym: "gland of Bowman" RELATED []
synonym: "glandulae olfactoriae" RELATED LATIN [Wikipedia:Olfactory_glands]
synonym: "olfactory gland of Bowman" EXACT []
xref: AAO:0010162
xref: BTO:0001697
xref: EMAPA:35613
xref: FMA:75801
xref: MA:0000287
xref: SCTID:368891001
xref: Wikipedia:Olfactory_glands
is_a: UBERON:0012278 ! gland of nasal mucosa
relationship: part_of UBERON:0005386 ! olfactory segment of nasal mucosa
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png xsd:anyURI
property_value: UBPROP:0000001 "Multicellular mucous glands of the olfactory epithelium, present only in adults.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010162", ontology="AAO", source="AAO:EJS"}

[Term]
id: UBERON:0002233
name: tectorial membrane of cochlea
namespace: uberon
def: "The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified]" [J:77634, MGI:anna, MP:0003149]
subset: pheno_slim
subset: uberon_slim
synonym: "tectorial membrane" EXACT [MA:0001199]
synonym: "tectorial membrane of spiral organ of cochlea" EXACT []
xref: BIRNLEX:2531
xref: EMAPA:35851
xref: FMA:75805
xref: GAID:876
xref: MA:0001199
xref: MESH:A09.246.631.246.292.906
xref: NCIT:C33740
xref: SCTID:368960006
xref: UMLS:C0039432 {source="ncithesaurus:Tectorial_Membrane"}
xref: UMLS:C1184928 {source="BIRNLEX:2531"}
xref: Wikipedia:Tectorial_membrane_(cochlea)
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
property_value: UBPROP:0000001 "The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia[Wikipedia:Tectorial_membrane_(cochlea)]." xsd:string {source="Wikipedia:Tectorial_membrane_(cochlea)"}
property_value: UBPROP:0000008 "in some squamate lineages, the tectorial membrane may not cover the whole cochlear duct/papilla. In some lineages, the tectorial membrane is divided into units called sallets[ISBN:9780387714691]" xsd:string

[Term]
id: UBERON:0002255
name: vomeronasal organ
namespace: uberon
def: "An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base." [VHOG:0000665]
subset: efo_slim
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
synonym: "Jacobson's organ" EXACT [XAO:0000272]
synonym: "organ of Jacobsen" RELATED []
synonym: "organon vomeronasale" EXACT LATIN []
synonym: "organum vomeronasale" EXACT LATIN [Wikipedia:Vomeronasal_organ]
synonym: "VNO" RELATED [VHOG:0000665]
xref: AAO:0000997
xref: BTO:0002608
xref: EFO:0001934
xref: EHDAA2:0002211
xref: EHDAA:7865
xref: EMAPA:17612
xref: FMA:77280
xref: GAID:354
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1566
xref: MA:0000289
xref: MESH:A04.531.591.940
xref: SCTID:361346007
xref: VHOG:0000665
xref: Wikipedia:Vomeronasal_organ
xref: XAO:0000272
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0000004 ! nose
relationship: part_of UBERON:0009954 ! vomeronasal system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png xsd:anyURI
property_value: UBPROP:0000001 "An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000665", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/vomeronasal+organ"}
property_value: UBPROP:0000003 "(...) the vomeronasal organ is known only in some tetrapods. It is absent in most turtles, crocodiles, birds, some bats, and aquatic mammals. In amphibians, it is in a recessed area off the main nasal cavity. (...) In mammals possesing this organ, it is an isolated area of olfactory membrane within the nasal cavity that is usually connected to the mouth via the nasopalatine duct (reference 1); The opinions concerning the presence and functioning of the vomeronasal organ in humans are controversial. The vomeronasal cavities appear early in human foetuses. (...) Historical examination of the nasal septum revealed the presence of vomeronasal cavities in approximately 70% of adults. In contrast to the situation in other mammals, the organ is not supported by a rigid tube of bone or cartilage (reference 2); (...) the best evidence for the homology of the human VNO to that of other primates (and of mammals in general) is ontogenetic in nature, based on a common embryonic origin from a thickening (vomeronasal primordium) on the medial aspect of each olfactory pit (reference 3); (...) suggesting that lungfish possess a region homologous to the accessory olfactory bulb of tetrapods. Based on these results, it seems appropriate to refer to the recess epithelium as a primordium of the vomeronasal organ (reference 4). [debated][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000665", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.669 (ref.1), http://www.ncbi.nlm.nih.gov/pubmed/9866877 Doving KB, Trotier D, Review: Structure and function of the vomeronasal organ. The Journal of Experimental Biology (1998) (ref.2), DOI:10.1046/j.1469-7580.2001.19810077.x Smith TD, Siegel MI, Bonar CJ, Bhatnagar KP, Mooney MP, Burrows AM, Smith MA, Maico LM, The existence of the vomeronasal organ in postnatal chimpanzees and evidence for its homology with that of humans. J Anat (2001) (ref.3) , DOI:10.1002/ar.22415 Nakamuta S, Nakamuta N, Taniguchi K, Taniguchi K, Histological and ultrastructural characteristics of the primordial vomeronasal organ in lungfish. Anat Rec (Hoboken) (2012) (ref.4)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "Generally formed only in tetrapods; lungfish have rudimentary VN organs; true VN organs are not normally found in recent fishes, birds, aquatic reptiles, aquatic mammals (Bertmar 1980). Humans: Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans was controversial, though most studies agree the organ regresses during fetal development. Many genes essential for VNO function in animals (such as TRPC2) are non-functional in humans (Liman ER. Use it or lose it: molecular evolution of sensory signaling in primates. Pflugers Arch. 2006;453(2):125-31.)" xsd:string

[Term]
id: UBERON:0002268
name: olfactory organ
namespace: uberon
def: "An organ that houses olfactory neurons and is responsible for the sense of smell. Examples include the vertebrate nose and the Drosophila dorsal organ." [UBERON:cjm]
subset: functional_classification
synonym: "main olfactory organ" NARROW []
synonym: "olfactory neuroepithelium" RELATED [BTO:0001772]
synonym: "olfactory organ" EXACT [BTO:0001772]
synonym: "olfactory sense organ" EXACT []
synonym: "olfactory sensory organ" EXACT [FBbt:00005158]
synonym: "organ olfactus" RELATED [BTO:0001772]
synonym: "organum olfactorium" RELATED [BTO:0001772]
synonym: "primary olfactory organ" NARROW []
xref: AAO:0010180
xref: BTO:0001772
xref: FBbt:00005158
xref: FMA:77659
xref: VHOG:0000287
xref: XAO:0000273
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0000020 ! sense organ
property_value: IAO:0000116 "An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint" xsd:string
property_value: UBPROP:0000012 "fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint" xsd:string

[Term]
id: UBERON:0002269
name: pupillary membrane
namespace: uberon
def: "The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks." [Wikipedia:Persistent_pupillary_membrane]
xref: FMA:77663
xref: MA:0001293
xref: Wikipedia:Persistent_pupillary_membrane
relationship: part_of UBERON:0001769 ! iris

[Term]
id: UBERON:0002270
name: hyaloid artery
namespace: uberon
def: "An artery that is part of the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens." [Wikipedia:Hyaloid_artery]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria hyaloidea" EXACT LATIN [Wikipedia:Hyaloid_artery]
synonym: "central artery of retina" RELATED [EMAPA:19242]
synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery]
synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery]
synonym: "hyaloid arteries" RELATED PLURAL [ZFA:0005045]
xref: EHDAA2:0004072
xref: EMAPA:19242
xref: FMA:77670
xref: SCTID:308790003
xref: TAO:0005045
xref: VHOG:0001478
xref: Wikipedia:Hyaloid_artery
xref: XAO:0004155
xref: ZFA:0005045
is_a: UBERON:0005492 ! hyaloid vessel
relationship: part_of UBERON:0005492 {source="ZFA"} ! hyaloid vessel
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI
property_value: UBPROP:0000001 "Artery that is internal to the eye. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005045", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000008 "In humans, Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla" xsd:string

[Term]
id: UBERON:0002276
name: lamina of spiral limbus
namespace: uberon
def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [Wikipedia:Limbus_laminae_spiralis]
subset: pheno_slim
subset: uberon_slim
synonym: "limbus lamina spiralis" EXACT [MA:0001191]
synonym: "limbus laminae spiralis" EXACT [FMA:77721]
synonym: "limbus laminae spiralis osseae" EXACT []
synonym: "spiral limbus" RELATED []
synonym: "spiral limbus lamina" EXACT [FMA:77721]
xref: EMAPA:35496
xref: FMA:77721
xref: MA:0001191
xref: Wikipedia:Limbus_laminae_spiralis
relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray930.png xsd:anyURI

[Term]
id: UBERON:0002277
name: spiral sulcus
namespace: uberon
def: "A concavity in the floor of the cochlear duct, formed by either the overhanging vestibular lip (inner spiral sulcus) or the spiral prominence and the spiral organ (outer spiral sulcus)." [http://orcid.org/0000-0002-6601-2165]
synonym: "sulcus spiralis" EXACT []
xref: EMAPA:35800
xref: FMA:77744
xref: MA:0001195
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0002278
name: perilymphatic space
namespace: uberon
def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource]
subset: vertebrate_core
synonym: "cisterna perilymphatica" RELATED [http://medical-dictionary.thefreedictionary.com/perilymphatic+space]
synonym: "Retzius space" RELATED []
synonym: "spatium perilymphaticum" RELATED [http://medical-dictionary.thefreedictionary.com/perilymphatic+space]
xref: BTO:0002083
xref: FMA:77745
xref: SCTID:362576001
xref: Wikipedia:Perilymphatic_space
xref: ZFA:0005459
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001846 {source="ZFA"} ! internal ear

[Term]
id: UBERON:0002279
name: vestibular aqueduct
namespace: uberon
def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [Wikipedia:Vestibular_aqueduct]
subset: pheno_slim
subset: uberon_slim
synonym: "aqueductus vestibuli" RELATED LATIN [Wikipedia:Vestibular_aqueduct]
xref: FMA:77821
xref: GAID:885
xref: MA:0001186
xref: MESH:D014723
xref: Wikipedia:Vestibular_aqueduct
relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI

[Term]
id: UBERON:0002280
name: otolith
namespace: uberon
def: "Acellular structure composed of calcium carbonate located in the otolith organ." [Wikipedia:Otolith, ZFIN:curator]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "immature otolith" RELATED []
synonym: "immature otoliths" RELATED []
synonym: "otoconia" RELATED PLURAL []
synonym: "otoconial crystal" RELATED [MP:0002894]
synonym: "otoconium" EXACT []
synonym: "otoliths" EXACT PLURAL []
synonym: "statoconia" RELATED PLURAL []
synonym: "statoconium" EXACT []
synonym: "statolith" RELATED []
xref: ANISEED:777311
xref: ANISEED:874485
xref: EMAPA:37924 {source="MA:th"}
xref: FMA:77826
xref: NCIT:C33230
xref: SCTID:368951003
xref: TAO:0001621
xref: UMLS:C0029894 {source="ncithesaurus:Otolith"}
xref: Wikipedia:Otolith
xref: ZFA:0001617
relationship: part_of UBERON:0002519 {source="MP", source="Wikipedia"} ! otolithic part of statoconial membrane
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI
property_value: IAO:0000116 "Currently represented as part of the otolith membrane, but they may also be considered to be embedded in this membrane" xsd:string
property_value: UBPROP:0000001 "Portion of organism substance composed of calcium carbonate located in the otolith organ.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001621", ontology="TAO", source="TAO:wd"}
property_value: UBPROP:0000002 "relationship loss: develops_from immature otolith (TAO:0000139)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001621", ontology="TAO"}
property_value: UBPROP:0000007 "otoconial" xsd:string
property_value: UBPROP:0000007 "otolithic" xsd:string
property_value: UBPROP:0000008 "Mammals have many tiny otoconia and fish have three large otoliths[ZFIN:df]" xsd:string

[Term]
id: UBERON:0002281
name: vestibular membrane of cochlear duct
namespace: uberon
def: "A membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane]
subset: pheno_slim
subset: uberon_slim
synonym: "membrana vestibularis ductus cochlearis" EXACT [MP:0006021]
synonym: "paries vestibularis ductus cochlearis" EXACT [MP:0006021]
synonym: "Reissner membrane" EXACT []
synonym: "Reissner's membrane" EXACT [FMA:77829]
synonym: "superior wall of cochlear duct" EXACT [FMA:77829]
synonym: "vestibular membrane" EXACT [MA:0001200]
synonym: "vestibular membrane" RELATED [MP:0006021]
synonym: "vestibular membrane of Reissner" EXACT [FMA:77829]
synonym: "vestibular wall of cochlear duct" EXACT [MP:0006021]
xref: EMAPA:35922
xref: FMA:77829
xref: MA:0001200
xref: NCIT:C33083
xref: SCTID:362575002
xref: Wikipedia:Reissner's_membrane
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png xsd:anyURI

[Term]
id: UBERON:0002282
name: stria vascularis of cochlear duct
namespace: uberon
def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [Wikipedia:Stria_vascularis]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
synonym: "psalterial cord" EXACT [MP:0000048]
synonym: "stria vascularis" EXACT []
synonym: "stria vascularis ductus cochlearis" RELATED LATIN [BTO:0001819]
synonym: "stria vascularis of cochlea" EXACT [FMA:77832]
synonym: "vascular stria of cochlear duct" RELATED [BTO:0001819]
synonym: "vascular stripe of cochlear duct" EXACT [MP:0000048]
xref: BIRNLEX:2525
xref: BTO:0001819
xref: CALOHA:TS-0982
xref: EFO:0001644
xref: EMAPA:35827
xref: FMA:77832
xref: GAID:875
xref: MA:0001198
xref: MESH:D013316
xref: SCTID:279842002
xref: UMLS:C0229477 {source="BIRNLEX:2525"}
xref: Wikipedia:Stria_vascularis
relationship: part_of UBERON:0001855 {source="FMA", source="MA"} ! cochlear duct of membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png xsd:anyURI
property_value: UBPROP:0000012 "represented as a wall in FMA. MESH def implies part of spiral ligament but better represented as adjacency / overlaps" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0002295
name: scala media
namespace: uberon
def: "the division of the spiral canal of the cochlea that contains the organ of Corti (the neuroepithelial receptor organ for hearing)" [MGI:anna, MP:0003169, PMID:1680563]
comment: located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [Wikipedia:Scala_media]
subset: pheno_slim
subset: uberon_slim
synonym: "cochlear duct" RELATED []
xref: EHDAA2:0000262
xref: EMAPA:35751
xref: FMA:79789
xref: MA:0002458
xref: Wikipedia:Scala_media
is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel
relationship: part_of UBERON:0001844 {source="FMA"} ! cochlea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png xsd:anyURI
property_value: IAO:0000116 "TODO - check cochlear duct vs cochlear aqueduct vs scala media" xsd:string

[Term]
id: UBERON:0002364
name: tympanic membrane
namespace: uberon
def: "A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [PMID:11237469, Wikipedia:Tympanic_membrane]
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
synonym: "ear drum" EXACT []
synonym: "eardrum" EXACT []
synonym: "lateral wall of tympanic cavity" EXACT []
synonym: "membranous wall of tympanic cavity" EXACT []
synonym: "myrinx" EXACT []
synonym: "paries membranaceus cavi tympani" EXACT LATIN [FMA:9595, FMA:TA]
synonym: "Rivinus' membrane" EXACT []
synonym: "tympanum" RELATED [Wikipedia:Tympanic_membrane]
xref: EMAPA:19062
xref: EV:0100358
xref: FMA:9595
xref: GAID:870
xref: MA:0000257
xref: MESH:A09.246.397.873
xref: NCIT:C12502
xref: SCTID:181180005
xref: UMLS:C0041445 {source="ncithesaurus:Tympanic_Membrane"}
xref: VHOG:0001146
xref: Wikipedia:Tympanic_membrane
xref: XAO:0000212
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
property_value: RO:0002161 NCBITaxon:8459 {source="Wikipedia"}
property_value: UBPROP:0000001 "The thin membrane which closes externally the cavity of the middle ear and is deeply sited at the bottom of the external auditory meatus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001146", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "In particular, a tympanic membrane was not present in the earliest tetrapods (...). An ear utilizing a tympanic membrane evolved independently at least three times in tetrapods: (1) in the lineage that leads to anurans (frogs), (2) in the line of evolution to turtles and diapsids, and (3) in the late synapsid lineage that gave rise to mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001146", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.418", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000011 "The tympanic membrane (TM) has three layers, two epithelia provided by the external acoustic meatus (EAM) and the MEC, derived respectively from the first pharyngeal cleft and pouch, and a mesenchymally derived fibrous stratum" xsd:string
property_value: UBPROP:0000012 "most AOs consider this part of the middle ear, so we go with this and place it in the middle ear as a border to the external, although it could be considered to overlap the external ear in that it has an EAM layer as part - for this reason we do not consider middle and external ear to be spatially disjoint." xsd:string {source="PMID:11237469"}

[Term]
id: UBERON:0002392
name: nasolacrimal duct
namespace: uberon
def: "the paired channels leading from the lacrimal sacs to the inferior meatus of the nose, through which tears are conducted through the nasal cavity" [ISBN:0-683-40008-8, MP:0008969]
subset: pheno_slim
subset: uberon_slim
synonym: "d. nasolacrimalis" RELATED LATIN [Wikipedia:Nasolacrimal_duct]
synonym: "nasolacrimal duct - posterior naris" BROAD [VHOG:0000664]
synonym: "tear duct" RELATED [Wikipedia:Nasolacrimal_duct]
xref: AAO:0000643
xref: EHDAA2:0001237
xref: EHDAA:7849
xref: EHDAA:9094
xref: EMAPA:17853
xref: FMA:9703
xref: GAID:902
xref: MA:0001299
xref: MESH:D009301
xref: NCIT:C33161
xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA
xref: SCTID:280643009
xref: UMLS:C0027437 {source="ncithesaurus:Nasolacrimal_Duct"}
xref: VHOG:0000664
xref: Wikipedia:Nasolacrimal_duct
relationship: part_of UBERON:0001850 ! lacrimal drainage system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png xsd:anyURI
property_value: UBPROP:0000003 "The nasolacrimal duct is probably homologous to the posterior (excurrent) naris of actinopterygian fishes.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000664", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.256", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000010 "the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, and is surrounded by connective tissue" xsd:string

[Term]
id: UBERON:0002393
name: pharyngotympanic tube
namespace: uberon
def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]" [FMA:FMA, Wikipedia:Eustachian_tube]
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
synonym: "auditory tube" EXACT [MA:0000255]
synonym: "eustachian tube" RELATED []
synonym: "internal auditory tube" EXACT []
synonym: "pharyngo-tympanic tube" EXACT [MA:0000255]
synonym: "tuba auditiva" EXACT LATIN [FMA:9705, FMA:TA]
synonym: "tuba auditiva; tuba auditoria; tuba auditivea" RELATED LATIN [Wikipedia:Eustachian_tube]
synonym: "tuba auditoria" EXACT LATIN [FMA:9705, FMA:TA]
synonym: "tuba pharyngotympanica" RELATED LATIN []
xref: AAO:0000146
xref: AAO:0011016
xref: EMAPA:17601
xref: EV:0100359
xref: FMA:9705
xref: GAID:869
xref: MA:0000255
xref: NCIT:C12500
xref: UMLS:C0015183 {source="ncithesaurus:Eustachian_Tube"}
xref: VHOG:0001145
xref: Wikipedia:Eustachian_tube
xref: XAO:0000213
relationship: part_of UBERON:0001756 ! middle ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/40/Ear-anatomy-text-small-en.svg xsd:anyURI
property_value: IAO:0000116 "we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship" xsd:string
property_value: UBPROP:0000001 "Furrow on the ventral surface of the otic capsule, and occasionally also the parasphenoid, that houses the Eustachian tube.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000146", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000001 "The narrow channel connecting the nasopharynx and the middle ear. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001145", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/auditory+tube"}
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000146", ontology="AAO"}
property_value: UBPROP:0000003 "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001145", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0002443
name: choroidal blood vessel
namespace: uberon
def: "A blood vessel that is part of a choroid [Automatically generated definition]." [OBOL:automatic]
comment: cannot find singular in FMA, using Set class
subset: pheno_slim
synonym: "blood vessel of choroid" EXACT [OBOL:automatic]
synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic]
synonym: "blood vessel of choroidea" EXACT [OBOL:automatic]
synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic]
synonym: "choroid blood vessel" EXACT [OBOL:automatic]
synonym: "choroid blood vessels" EXACT []
synonym: "choroid blood vessels set" EXACT []
synonym: "choroid coat blood vessel" EXACT [OBOL:automatic]
synonym: "choroidea blood vessel" EXACT [OBOL:automatic]
synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic]
synonym: "set of choroid blood vessels" RELATED [FMA:76550]
synonym: "vasa sanguinea choroideae" EXACT LATIN [FMA:76550, FMA:TA]
xref: EMAPA:17828
xref: FMA:76550
xref: MA:0001237
relationship: part_of UBERON:0001776 ! optic choroid

[Term]
id: UBERON:0002444
name: lens fiber
namespace: uberon
def: "A region of the lens consisting of packed elongated enucleate cells packed with crystallin" [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
synonym: "fibrae lentis" EXACT LATIN [FMA:76827, FMA:TA]
synonym: "lens fibers" EXACT []
synonym: "lens fibers set" EXACT []
synonym: "lens fibre" RELATED [EMAPA:17841]
synonym: "lens fibres" EXACT []
synonym: "set of lens fibers" RELATED [FMA:76827]
xref: BTO:0000724
xref: CALOHA:TS-0544
xref: EHDAA:4745
xref: EHDAA:9065
xref: EMAPA:17841
xref: FMA:76827
xref: MA:0001304
xref: NCIT:C32976
xref: RETIRED_EHDAA2:0000979
xref: UMLS:C0229224 {source="ncithesaurus:Lens_Fiber"}
xref: VHOG:0000444
xref: Wikipedia:Lens_(anatomy)#Lens_fibers
xref: XAO:0004096
relationship: part_of UBERON:0000965 ! lens of camera-type eye
property_value: UBPROP:0000001 "Fibres resembling a ribbon and arranged in very thin plates in the lens. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000444", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "(...) the line, or Y, or star sutures common to mammalian lenses, including those of primates. In the case of line or Y sutures, the overlapping of lens fibers in each successive shell is coincident and results in the formation of four or six three-dimensional suture planes that extend from the lens nucleus to the periphery.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000444", ontology="VHOG", source="DOI:10.1167/iovs.03-0466 Sivak JG, Through the lens clearly: phylogeny and development, The Proctor lecture. Investigative ophthalmology and visual science (2004)", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0002448
name: fungiform papilla
namespace: uberon
def: "Any of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue" [MGI:smb, MP:0006257]
subset: pheno_slim
subset: uberon_slim
synonym: "fungiform papilla of tongue" EXACT [FMA:54821]
synonym: "fungiform papillae" EXACT PLURAL []
synonym: "fungiform papillae set" EXACT PLURAL []
synonym: "papillae fungiformes" RELATED LATIN [Wikipedia:Fungiform_papilla]
xref: BIRNLEX:4106
xref: EMAPA:18272
xref: FMA:54821
xref: MA:0001595
xref: NCIT:C32644
xref: SCTID:80673002
xref: UMLS:C0226968 {source="BIRNLEX:4106"}
xref: UMLS:C0545784 {source="BIRNLEX:4106"}
xref: UMLS:C0545784 {source="ncithesaurus:Fungiform_Papilla"}
xref: UMLS:C1267558 {source="BIRNLEX:4106"}
xref: Wikipedia:Fungiform_papilla
is_a: UBERON:0001726 {source="MA"} ! papilla of tongue
is_a: UBERON:0014389 ! gustatory papilla of tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png xsd:anyURI
property_value: UBPROP:0000001 "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted][Wikipedia:Fungiform_papilla]." xsd:string {source="Wikipedia:Fungiform_papilla"}
property_value: UBPROP:0000008 "In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006]" xsd:string

[Term]
id: UBERON:0002467
name: filiform papilla
namespace: uberon
def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [Wikipedia:Filiform_papilla]
subset: pheno_slim
subset: uberon_slim
synonym: "filiform papilla of tongue" EXACT [FMA:54820]
synonym: "filiform papillae" EXACT []
synonym: "filiform papillae set" EXACT []
synonym: "papillae filiformes" RELATED LATIN [Wikipedia:Filiform_papilla]
xref: BIRNLEX:4104
xref: EMAPA:18873
xref: FMA:54820
xref: MA:0002678
xref: NCIT:C32604
xref: SCTID:58743008
xref: UMLS:C0226966 {source="BIRNLEX:4104"}
xref: UMLS:C0545782 {source="ncithesaurus:Filiform_Papilla"}
xref: UMLS:C0545782 {source="BIRNLEX:4104"}
xref: UMLS:C1267556 {source="BIRNLEX:4104"}
xref: Wikipedia:Filiform_papilla
is_a: UBERON:0001726 ! papilla of tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1016.png xsd:anyURI

[Term]
id: UBERON:0002468
name: foliate papilla
namespace: uberon
def: "Any of the papillae located on the sides of the tongue" [ISBN:0-8036-0655-9, MGI:smb, MP:0006259]
subset: pheno_slim
subset: uberon_slim
synonym: "foliate papilla of tongue" EXACT [FMA:54823]
synonym: "foliate papillae" EXACT []
synonym: "foliate papillae set" EXACT []
synonym: "papillae foliatae" RELATED LATIN [Wikipedia:Foliate_papilla]
xref: BIRNLEX:4105
xref: EMAPA:32788
xref: FMA:54823
xref: MA:0002679
xref: NCIT:C32619
xref: SCTID:362098003
xref: UMLS:C0226969 {source="BIRNLEX:4105"}
xref: UMLS:C0545785 {source="ncithesaurus:Foliate_Papilla"}
xref: UMLS:C0545785 {source="BIRNLEX:4105"}
xref: Wikipedia:Foliate_papilla
is_a: UBERON:0014389 ! gustatory papilla of tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png xsd:anyURI
property_value: UBPROP:0000001 "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted][Wikipedia:Foliate_papilla]." xsd:string {source="Wikipedia:Foliate_papilla"}

[Term]
id: UBERON:0002479
name: dorsal lateral geniculate nucleus
namespace: uberon
def: "The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe." [http://www.medilexicon.com/medicaldictionary.php?t=61422]
synonym: "corpus geniculatum laterale (Hassler)" RELATED LATIN [NeuroNames:353]
synonym: "DLG" BROAD ABBREVIATION [BIRNLEX:1595, NIFSTD:NeuroNames_abbrevSource]
synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775]
synonym: "dorsal part of the lateral geniculate complex" RELATED [NeuroNames:353]
synonym: "lateral geniculate complex, dorsal part" EXACT []
synonym: "lateral geniculate nucleus dorsal part" RELATED [BAMS:LGd]
synonym: "lateral geniculate nucleus, dorsal part" EXACT [NeuroNames:353]
synonym: "nucleus corporis geniculati lateralis, pars dorsalis" RELATED LATIN [NeuroNames:353]
synonym: "nucleus dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:62214, FMA:TA]
synonym: "nucleus geniculatus lateralis dorsalis" RELATED LATIN [NeuroNames:353]
synonym: "nucleus geniculatus lateralis pars dorsalis" EXACT [BIRNLEX:1595]
xref: BAMS:DLG
xref: BAMS:LGd
xref: BIRNLEX:1595
xref: BM:GLd
xref: DHBA:10430
xref: DMBA:16436
xref: EMAPA:35290
xref: FMA:62214
xref: HBA:4440
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=353 {source="BIRNLEX:1595"}
xref: MA:0002775
xref: MBA:170
xref: PBA:128013074
xref: UMLS:C0175292 {source="BIRNLEX:1595"}
relationship: part_of UBERON:0002104 {source="NIFSTD"} ! visual system

[Term]
id: UBERON:0002488
name: helix of outer ear
namespace: uberon
def: "The helix is the prominent rim of the pinna." [Wikipedia:Helix]
subset: pheno_slim
subset: uberon_slim
synonym: "helical part of pinna" EXACT []
synonym: "helix" EXACT [MA:0002793]
synonym: "helix (auricula)" EXACT []
synonym: "helix of auricle of ear" EXACT []
synonym: "helix of ear" EXACT []
synonym: "helix of pinna" EXACT []
xref: FMA:60992
xref: MA:0002793
xref: NCIT:C32724
xref: OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA
xref: SCTID:279607004
xref: UMLS:C0229304 {source="ncithesaurus:Helix"}
xref: Wikipedia:Helix_(ear)
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0002496
name: stapes base
namespace: uberon
def: "The flat portion of the stirrup of the ear that fits in the oval window between the middle and inner ear." [http://medical-dictionary.thefreedictionary.com/base+of+stapes]
subset: pheno_slim
subset: uberon_slim
synonym: "base of stapes" EXACT [MA:0002804]
synonym: "basis stapedis" EXACT LATIN []
synonym: "footplate" RELATED INCONSISTENT [FMA:52769]
synonym: "stapes footpiece" EXACT []
synonym: "stapes footplate" EXACT [MA:0002804]
xref: FMA:52769
xref: MA:0002804
xref: SCTID:279685009
relationship: part_of UBERON:0001687 {source="MA"} ! stapes bone

[Term]
id: UBERON:0002499
name: cochlear labyrinth
namespace: uberon
def: "The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth]
subset: pheno_slim
subset: uberon_slim
xref: BTO:0004686
xref: EMAPA:36569
xref: FMA:61259
xref: MA:0002809
xref: NCIT:C32336
xref: UMLS:C0931689 {source="ncithesaurus:Cochlear_Labyrinth"}
xref: Wikipedia:Cochlear_labyrinth
relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI
property_value: IAO:0000116 "we follow the FMA in placing this in the membranous labyrinth. Notes: The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear" xsd:string

[Term]
id: UBERON:0002505
name: spiral modiolar artery
namespace: uberon
def: "The artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629]
subset: pheno_slim
xref: FMA:52312
xref: MA:0002824
xref: SCTID:149380004
relationship: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0018231 ! labyrinthine artery

[Term]
id: UBERON:0002506
name: iris epithelium
namespace: uberon
def: "An epithelium that is part of a iris [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "epithelial tissue of iris" EXACT [OBOL:automatic]
synonym: "epithelium of iris" EXACT [OBOL:automatic]
synonym: "epithelium pigmentosum (iris)" EXACT [FMA:58517]
synonym: "epithelium pigmentosum iridis" EXACT LATIN [FMA:58517, FMA:TA]
synonym: "iris epithelial tissue" EXACT [OBOL:automatic]
synonym: "iris epithelium" EXACT [FMA:58517]
synonym: "iris pigmented epithelium" RELATED [MA:0002826]
synonym: "pigmented epithelium of iris" EXACT [FMA:58517]
xref: EMAPA:35447
xref: FMA:58517
xref: MA:0002826
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001769 {source="MA"} ! iris

[Term]
id: UBERON:0002518
name: otolith organ
namespace: uberon
def: "the crystalline particles composed of calcium carbonate and a protein which adhere to the gelatinous membrane of the maculae of the utricle and saccule (otolithic membrane)" [ISBN:0-683-40008-8, MGI:llw2, MP:0002894]
subset: efo_slim
subset: organ_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "otolith organs" RELATED [ZFA:0000559]
synonym: "saccule and utricle" RELATED [MESH:A09.246.631.909.625]
synonym: "utricle and saccule" RELATED [MESH:A09.246.631.909.625]
xref: EFO:0003539
xref: GAID:883
xref: MA:0002841
xref: MESH:D012444
xref: TAO:0000559
xref: VHOG:0001676
xref: Wikipedia:Otolith_organ
xref: ZFA:0000559
is_a: UBERON:0006585 ! vestibular organ
relationship: part_of UBERON:0001862 ! vestibular labyrinth
relationship: part_of UBERON:0004681 ! vestibular system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg xsd:anyURI
property_value: IAO:0000116 "Representation of utricle, sacule and otoliths in correspondence to other ontologies may require review. In EHDAA2, saccule and utricle are epithelia" xsd:string
property_value: UBPROP:0000003 "In fishes, as in other vertebrates, the vestibular end-organs are divided into a gravity receptor system, with three subdivisions and an angular acceleration receptor system. The gravity receptor system on each side consists of utricular, saccular, and lagenar maculae, each covered by an otolith (reference 1); (...)considerations have led to our rethinking issues related to the origin of several aspects of vertebrate hearing, and to the view that many basic auditory functions evolved very early in vertebrate history, and that the functions observed in more `advanced' vertebrates, such as birds and mammals, are frequently modifications of themes first encountered in fishes, and perhaps even more ancestral animals (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001676", ontology="VHOG", source="PMID:11581521 Moorman SJ, Development of sensory systems in zebrafish (Danio rerio). ILAR Journal (2001), DOI:10.1016/S0378-5955(00)00168-4 Fay RR, Popper AN, Evolution of hearing in vertebrates: the inner ears and processing. Hearing research (2000)", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0002519
name: otolithic part of statoconial membrane
namespace: uberon
def: "The layer of the statoconial membrane that is composed of otoliths" [PMID:2482728]
subset: pheno_slim
subset: uberon_slim
synonym: "membrana statoconiorum" BROAD LATIN [FMA:75573, FMA:TA]
synonym: "otolith layer of statoconial membrane" EXACT [FMA:75573]
synonym: "otolithic membrane" BROAD [MA:0002842]
xref: FMA:75573
xref: GAID:884
xref: MA:0002842
xref: MESH:D010037
xref: SCTID:362571006
xref: Wikipedia:Otolithic_membrane
relationship: part_of UBERON:0016567 ! statoconial membrane

[Term]
id: UBERON:0002536
name: arthropod sensillum
namespace: uberon
def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, Wikipedia:Sensillum]
subset: efo_slim
subset: uberon_slim
synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933]
xref: BTO:0001237
xref: EFO:0000939
xref: FBbt:00007152
xref: HAO:0000933
xref: MAT:0000163
xref: MIAA:0000163
xref: TGMA:0000540
xref: Wikipedia:Sensillum
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0000020 ! sense organ
property_value: IAO:0000116 "this term should be ceded to the arthropod anatomy ontology" xsd:string

[Term]
id: UBERON:0002540
name: lateral line system
namespace: uberon
def: "A line of sensory organs and associated structures along the sides of fish and amphibia that detect vibrations and pressure changes." [http://orcid.org/0000-0002-6601-2165, ISBN:0471209627, ISBN:0815318960, Wikipedia:Lateral_line_system]
subset: efo_slim
subset: uberon_slim
synonym: "lateral line organs" RELATED [VHOG:0001243]
synonym: "lateral line stitches" RELATED []
synonym: "lateral-line organs" RELATED []
synonym: "ll" RELATED []
xref: AAO:0000269
xref: AAO:0000975
xref: EFO:0000941
xref: MAT:0000249
xref: MIAA:0000249
xref: TAO:0000034
xref: VHOG:0001243
xref: Wikipedia:Lateral_line_system
xref: XAO:0000095
xref: ZFA:0000034
is_a: UBERON:0001032 ! sensory system
property_value: IAO:0000116 "we model this as being potentially inclusive of lateral line scales, and thus overlapping with the skeletal system. This is to accomodate TAO" xsd:string
property_value: RO:0002161 NCBITaxon:32524 {source="http://tolweb.org/Amniota"}
property_value: UBPROP:0000001 "A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000034", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000001 "Sensory system which develops from a specialized series of dorsolateral ectodermal placodes named lateral line placodes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000975", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000002 "relationship loss: is_formed_by lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000975", ontology="AAO"}
property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001243", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0002627
name: capsule of medial geniculate body
namespace: uberon
synonym: "capsula corporis geniculati medialis" EXACT [BIRNLEX:1214]
synonym: "capsule of the medial geniculate body" RELATED [NeuroNames:359]
synonym: "medial geniculate body capsule" EXACT [FMA:62049]
xref: BAMS:cmg
xref: BIRNLEX:1214
xref: FMA:62049
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=359 {source="BIRNLEX:1214"}
relationship: part_of UBERON:0001927 ! medial geniculate body

[Term]
id: UBERON:0002673
name: vestibular nuclear complex
namespace: uberon
def: "Nuclear complex containing the vestibular nuclei." [UBERON:cjm]
subset: uberon_slim
synonym: "nuclei vestibulares" RELATED LATIN [Wikipedia:Vestibular_nuclei]
synonym: "nuclei vestibulares in medulla oblongata" EXACT LATIN [FMA:72239, FMA:TA]
synonym: "vestibular nuclei" EXACT [FMA:72239]
synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239]
synonym: "vestibular nucleus" RELATED [GO:0021750]
xref: BAMS:Ve
xref: BAMS:VNC
xref: BIRNLEX:1337
xref: BM:Me-VS
xref: BTO:0004368
xref: CALOHA:TS-2078
xref: EV:0100254
xref: FMA:72239
xref: GAID:602
xref: HBA:9697
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=714 {source="BIRNLEX:1337"}
xref: MBA:701
xref: MESH:D014726
xref: UMLS:C0042600 {source="BIRNLEX:1337"}
xref: Wikipedia:Vestibular_nuclei
relationship: part_of UBERON:0004681 {source="Wikipedia:Vestibular_nuclei"} ! vestibular system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png xsd:anyURI
property_value: IAO:0000116 "In TA they are grouped in both the pons and medulla; DHBA has 'vestibular nuclei of pons', with LVN and SVN underneath; WP+MA says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF." xsd:string

[Term]
id: UBERON:0002689
name: supraoptic crest
namespace: uberon
def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Organum_vasculosum_of_the_lamina_terminalis]
synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV]
synonym: "organum vasculosum" RELATED [NeuroNames:383]
synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NLXANAT:100313]
synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA]
synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383]
synonym: "OVLT" EXACT ABBREVIATION [BIRNLEX:1400]
synonym: "prechiasmatic gland" EXACT [BIRNLEX:1400]
synonym: "SoC" BROAD ABBREVIATION [BIRNLEX:1400, NIFSTD:NeuroNames_abbrevSource]
synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315]
synonym: "vascular organ of the lamina terminalis" RELATED [NeuroNames:383]
xref: BAMS:OV
xref: BAMS:SoC
xref: BAMS:VOLT
xref: BIRNLEX:1400
xref: DHBA:12106
xref: DMBA:15582
xref: EMAPA:37742 {source="MA:th"}
xref: FMA:62315
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=383 {source="BIRNLEX:1400"}
xref: MA:0003018
xref: MBA:763
xref: NLXANAT:100313
xref: UMLS:C0175316 {source="BIRNLEX:1400"}
xref: Wikipedia:Organum_vasculosum_of_the_lamina_terminalis
is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ
property_value: UBPROP:0000012 "NIF has two classes here; Editor note: consider relationship to lamina terminalis" xsd:string {external_ontology="NIF"}

[Term]
id: UBERON:0002758
name: dorsal nucleus of medial geniculate body
namespace: uberon
def: "Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3)" [BIRNLEX:1608]
synonym: "DMG" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource]
synonym: "dorsal medial geniculate nucleus" RELATED [BAMS:MGD]
synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216]
synonym: "dorsal nucleus of the medial geniculate body" RELATED [NeuroNames:356]
synonym: "medial geniculate complex dorsal part" RELATED [BAMS:MGd]
synonym: "medial geniculate complex, dorsal part" EXACT [BIRNLEX:1608]
synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGd]
synonym: "medial geniculate nucleus dorsal part" RELATED [BAMS:MGD]
synonym: "medial geniculate nucleus, dorsal part" EXACT [BIRNLEX:1608]
synonym: "MGD" BROAD ABBREVIATION [BIRNLEX:1608, NIFSTD:NeuroNames_abbrevSource]
synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [BIRNLEX:1608]
synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673]
synonym: "nucleus dorsalis corporis geniculati medialis" EXACT LATIN [FMA:62216, FMA:TA]
synonym: "nucleus geniculatus medialis fibrosus (hassler)" EXACT [BIRNLEX:1608]
synonym: "nucleus geniculatus medialis pars dorsalis" EXACT [BIRNLEX:1608]
xref: BAMS:DMG
xref: BAMS:MGD
xref: BAMS:MGd
xref: BIRNLEX:1608
xref: BTO:0002673
xref: DHBA:10435
xref: FMA:62216
xref: HBA:265504828
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=356 {source="BIRNLEX:1608"}
xref: MBA:1072
relationship: part_of UBERON:0001927 ! medial geniculate body

[Term]
id: UBERON:0002759
name: magnocellular nucleus of medial geniculate body
namespace: uberon
synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [BIRNLEX:1612]
synonym: "corpus geniculatus mediale, pars magnocellularis" RELATED LATIN [NeuroNames:358]
synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [BIRNLEX:1612]
synonym: "magnocellular medial geniculate nucleus" RELATED [BAMS:MGM]
synonym: "magnocellular nucleus of medial geniculate complex" RELATED [NeuroNames:358]
synonym: "magnocellular nucleus of the medial geniculate body" RELATED [NeuroNames:358]
synonym: "medial division of medial geniculate body" EXACT [FMA:62218]
synonym: "medial geniculate complex medial part" RELATED [BAMS:MGm]
synonym: "medial geniculate complex, medial part" EXACT [FMA:62218]
synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGm]
synonym: "medial geniculate nucleus medial part" RELATED [BAMS:MGM]
synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218]
synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218]
synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218]
synonym: "MMG" BROAD ABBREVIATION [BIRNLEX:1612, NIFSTD:NeuroNames_abbrevSource]
synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [BIRNLEX:1612]
synonym: "nucleus corporis geniculati medialis, pars magnocellularis" RELATED LATIN [NeuroNames:358]
synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [BIRNLEX:1612]
synonym: "nucleus geniculatus medialis magnocellularis (Hassler)" RELATED LATIN [NeuroNames:358]
synonym: "nucleus geniculatus medialis, pars magnocelluaris" EXACT [BIRNLEX:1612]
synonym: "nucleus geniculatus medialis, pars magnocellularis" RELATED LATIN [NeuroNames:358]
synonym: "nucleus medialis magnocellularis corporis geniculati medialis" RELATED [BTO:0002672]
xref: BAMS:MGM
xref: BAMS:MGm
xref: BAMS:MMG
xref: BIRNLEX:1612
xref: BTO:0002672
xref: DHBA:10439
xref: FMA:62218
xref: HBA:4448
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=358 {source="BIRNLEX:1612"}
xref: MBA:1088
xref: UMLS:C0175296 {source="BIRNLEX:1612"}
relationship: part_of UBERON:0001927 ! medial geniculate body

[Term]
id: UBERON:0002779
name: lateral superior olivary nucleus
namespace: uberon
def: "One of two recognized nuclei comprising the superior olive. The lateral superior olivary nucleus is much less prominent in humans than in many rodents and carnivores. In the latter species, it is frequently described as S- or V-shaped." [BIRNLEX:1675]
subset: uberon_slim
synonym: "accessory olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olive" EXACT [FMA:72472]
synonym: "inferior olivary complex dorsalaccessory nucleus" RELATED [BAMS:IOda]
synonym: "lateral superior olive" EXACT [FMA:72472]
synonym: "LSON" EXACT ABBREVIATION []
synonym: "nucleus olivaris superior lateralis" RELATED LATIN [NeuroNames:571]
synonym: "superior olivary complex, lateral part" RELATED [NeuroNames:571]
synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472]
synonym: "superior olive lateral part" EXACT []
xref: BAMS:IOda
xref: BAMS:LSO
xref: BIRNLEX:1675
xref: BM:Pons-SOL
xref: DHBA:12469
xref: DMBA:17261
xref: FMA:72472
xref: HBA:9183
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=571 {source="BIRNLEX:1675"}
xref: MBA:114
xref: SCTID:360477003
xref: UMLS:C0175429 {source="BIRNLEX:1675"}
xref: Wikipedia:Olivary_body
is_a: UBERON:0007247 ! nucleus of superior olivary complex
relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png xsd:anyURI

[Term]
id: UBERON:0002782
name: medial superior olivary nucleus
namespace: uberon
def: "One of two subnuclei of the superior olive located within the caudal pontine tegmentum. Appears as a parasagittal row of transversely oriented bipolar neurons in transverse sections of human, with elongated somata in humans and other primates and large caliber dendrites." [BIRNLEX:1682]
subset: defined_by_cytoarchitecture
subset: uberon_slim
synonym: "chief nucleus of superior olive" EXACT [FMA:72473]
synonym: "chief superior olivary nucleus" EXACT [FMA:72473]
synonym: "main superior olivary nucleus" EXACT [FMA:72473]
synonym: "medial superior olive" EXACT [FMA:72473]
synonym: "MSO" RELATED ABBREVIATION [BIRNLEX:1682]
synonym: "nucleus laminaris" RELATED [BIRNLEX:1682]
synonym: "nucleus olivaris superior medialis" RELATED LATIN [NeuroNames:572]
synonym: "principal superior olivary nucleus" EXACT [FMA:72473]
synonym: "superior olivary complex, medial part" RELATED [NeuroNames:572]
synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473]
synonym: "superior olive medial part" EXACT []
synonym: "superior paraolivary nucleus" RELATED [NeuroNames:572]
synonym: "superior parolivary nucleus" RELATED [NeuroNames:572]
xref: BAMS:MSO
xref: BIRNLEX:1682
xref: BM:Pons-SOM
xref: DHBA:12470
xref: DMBA:17262
xref: FMA:226223
xref: FMA:72473
xref: HBA:9184
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=572 {source="BIRNLEX:1682"}
xref: MBA:105
xref: UMLS:C0175430 {source="BIRNLEX:1682"}
xref: Wikipedia:Superior_olivary_complex
is_a: UBERON:0007247 ! nucleus of superior olivary complex
relationship: part_of UBERON:0022434 {source="NIFSTD"} ! primary superior olive
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png xsd:anyURI

[Term]
id: UBERON:0002819
name: apex of cochlea
namespace: uberon
def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [Wikipedia:Apex_of_cochlea]
subset: uberon_slim
synonym: "apex of cochlear canal" EXACT [BIRNLEX:2555]
synonym: "apex of the cochlear canal" EXACT [BIRNLEX:2555]
synonym: "cochlea apex" EXACT [FMA:75641]
synonym: "cupula of cochlea" EXACT [FMA:75641]
synonym: "cupula of the cochlear canal" EXACT [BIRNLEX:2557]
xref: BIRNLEX:2523
xref: BIRNLEX:2555
xref: BIRNLEX:2557
xref: FMA:75641
xref: SCTID:279776002
xref: SCTID:279777006
xref: UMLS:C0458764 {source="BIRNLEX:2557"}
xref: UMLS:C0458765 {source="BIRNLEX:2555"}
xref: UMLS:C1184827 {source="BIRNLEX:2523"}
xref: Wikipedia:Apex_of_cochlea
relationship: part_of UBERON:0006106 ! cochlear canal

[Term]
id: UBERON:0002820
name: zona arcuata of basilar membrane of cochlea
namespace: uberon
alt_id: UBERON:0002821
alt_id: UBERON:0031464
def: "The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti." [https://github.com/obophenotype/uberon/issues/1357, Wikipedia:Inner_tunnel]
synonym: "arcuate zone of basilar membrane" EXACT []
synonym: "arcuate zone of organ of corti" EXACT []
synonym: "basilar membrane of cochlea, zona arcuata" EXACT []
synonym: "inner tunnel" BROAD [Wikipedia:Inner_tunnel]
synonym: "zona arcuata" BROAD [Wikipedia:Inner_tunnel]
xref: BIRNLEX:2528
xref: FMA:75709
xref: SCTID:368961005
xref: UMLS:C1184862 {source="BIRNLEX:2528"}
xref: Wikipedia:Inner_tunnel
is_a: UBERON:0036250 ! zone of basilar membrane of cochlea
relationship: part_of UBERON:0002226 ! basilar membrane of cochlea

[Term]
id: UBERON:0002822
name: macula lutea proper
namespace: uberon
def: "The part of the macula lutea that excludes the fovea." [http://orcid.org/0000-0002-6601-2165]
xref: BIRNLEX:2542
xref: FMA:58671
xref: UMLS:C0934637 {source="BIRNLEX:2542"}
relationship: part_of UBERON:0000053 ! macula lutea
property_value: IAO:0000116 "consider obsoletion" xsd:string

[Term]
id: UBERON:0002823
name: clivus of fovea centralis
namespace: uberon
comment: NIF differs from FMA
synonym: "clivus of macula lutea" EXACT [BIRNLEX:2544]
synonym: "fovea centralis clivus" EXACT [FMA:58674]
xref: BIRNLEX:2544
xref: FMA:58674
xref: UMLS:C0929757 {source="BIRNLEX:2544"}
xref: UMLS:C0929760 {source="BIRNLEX:2544"}
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001786 ! fovea centralis

[Term]
id: UBERON:0002824
name: vestibular ganglion
namespace: uberon
def: "The ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. Distributed to the maculae of the utricle and saccule and to the ampullary crests of the semicircular ducts. The vestibular fibers arise in bipolar cells in the vestibular ganglion in the internal acoustic meatus." [http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html, Wikipedia:Scarpa%27s_ganglion]
subset: pheno_slim
subset: uberon_slim
synonym: "nucleus nervi oculomotorii, pars medialis" RELATED LATIN [NeuroNames:495]
synonym: "Scarpa's ganglion" EXACT [FMA:53435]
synonym: "vestibular part of vestibulocochlear ganglion" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "vestibulocochlear ganglion vestibular component" RELATED [EMAPA:17573]
synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086]
xref: BAMS:GvVIII
xref: BIRNLEX:2549
xref: EMAPA:17573
xref: FMA:53435
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=495 {source="BIRNLEX:2549"}
xref: MA:0001086
xref: NCIT:C33870
xref: RETIRED_EHDAA2:0002199
xref: SCTID:244450009
xref: UMLS:C0036286 {source="BIRNLEX:2549"}
xref: UMLS:C0036286 {source="ncithesaurus:Vestibular_Ganglion"}
xref: UMLS:C0446706 {source="BIRNLEX:2549"}
xref: VHOG:0000682
xref: Wikipedia:Scarpa%27s_ganglion
is_a: UBERON:0006585 ! vestibular organ
relationship: part_of UBERON:0001862 ! vestibular labyrinth
relationship: part_of UBERON:0002827 ! vestibulocochlear ganglion
relationship: part_of UBERON:0004681 ! vestibular system

[Term]
id: UBERON:0002825
name: superior part of vestibular ganglion
namespace: uberon
def: "The part of the vestibular ganglion that receives fibers from the maculae of the utricle and the sacculae and the ampullae of the anterior and lateral semicircular ducts." [ISBN:0-683-40008-8, MP:0000028]
subset: pheno_slim
synonym: "pars superior ganglionis vestibularis" EXACT LATIN [FMA:77531, FMA:TA]
synonym: "pars superior vestibularis" RELATED [MA:0002778]
synonym: "vestibular ganglion superior part" EXACT [MA:0002778]
xref: BIRNLEX:2551
xref: FMA:77531
xref: MA:0002778
xref: UMLS:C1186166 {source="BIRNLEX:2551"}
relationship: part_of UBERON:0002824 ! vestibular ganglion

[Term]
id: UBERON:0002826
name: inferior part of vestibular ganglion
namespace: uberon
synonym: "pars inferior ganglionis vestibularis" EXACT LATIN [FMA:77532, FMA:TA]
synonym: "vestibular ganglion inferior part" EXACT [MA:0002779]
xref: BIRNLEX:2552
xref: FMA:77532
xref: MA:0002779
xref: UMLS:C1186167 {source="BIRNLEX:2552"}
relationship: part_of UBERON:0002824 ! vestibular ganglion

[Term]
id: UBERON:0002827
name: vestibulocochlear ganglion
namespace: uberon
def: "the group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia" [MGI:smb, MP:0003703]
subset: efo_slim
subset: pheno_slim
subset: vertebrate_core
synonym: "acoustic ganglion" RELATED [VHOG:0000696]
synonym: "acoustic ganglion VIII" EXACT [EMAPA:16982]
synonym: "acoustico-vestibular VIII ganglion" EXACT [EHDAA2:0002196]
synonym: "auditory ganglion" EXACT [ZFA:0000588]
synonym: "auditory ganglion" RELATED [BIRNLEX:2564]
synonym: "ganglion VIII" EXACT []
synonym: "gVIII" EXACT [ZFA:0000588]
synonym: "nucleus nervi oculomotorii ventrolateralis" RELATED LATIN [NeuroNames:496]
synonym: "nucleus nervi oculomotorii, pars ventralis" RELATED LATIN [NeuroNames:496]
synonym: "SAG" BROAD [ZFA:0000588]
synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588]
synonym: "statoacoustic ganglia" EXACT [ZFA:0000588]
synonym: "statoacoustic ganglion" EXACT [XAO:0004142]
synonym: "statoacoustic VIII ganglion" RELATED [VHOG:0000696]
synonym: "vestibulocochlear ganglia" RELATED PLURAL [XAO:0004142]
synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084]
xref: BIRNLEX:2564
xref: EFO:0003543
xref: EHDAA2:0002196
xref: EHDAA:5569
xref: EHDAA:6653
xref: EMAPA:16982
xref: EMAPA:17571
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=496 {source="BIRNLEX:2564"}
xref: MA:0001084
xref: TAO:0000588
xref: UMLS:C0037959 {source="BIRNLEX:2564"}
xref: VHOG:0000696
xref: XAO:0004142
xref: ZFA:0000588
relationship: part_of UBERON:0002105 {source="ZFA"} ! vestibulo-auditory system
property_value: IAO:0000116 "Consider follow MA naming scheme." xsd:string
property_value: UBPROP:0000001 "The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000588", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "(During the development of the inner ear in a vertebrate embryo) As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000696", ontology="VHOG", source="PMID:21452441 Park BY, Saint-Jeannet JP, Induction and Segregation of the Vertebrate Cranial Placodes. Developmental Biology (2010)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000013 "The cell bodies of the cochlear nerve lie within the central aspect of the cochlea and are collectively known as the spiral ganglion. This name reflects the fact that the cell bodies, considered as a unit, have a spiral (or perhaps more accurately, a helical) shape, reflecting the shape of the cochlea. The terms 'cochlear nerve fiber' and 'spiral ganglion cell' are used, to some degree, interchangeably, although the former may be used to more specifically refer to the central axons of the cochlear nerve. These central axons exit the cochlea at its base, where it forms a nerve trunk. In humans, this aspect of the nerve is roughly one inch in length. It projects centrally to the brainstem, where its fibers synapse with the cell bodies of the cochlear nucleus" xsd:string {source="Wikipedia:Cochlear_nerve"}

[Term]
id: UBERON:0002832
name: ventral nucleus of trapezoid body
namespace: uberon
def: "A small nucleus of the periolivary complex located laterally to the MNTB, and ventral to the MSO." [Wikipedia:Superior_olivary_complex#Ventral_nucleus_of_the_trapezoid_body_.28VNTB.29]
synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477]
synonym: "nucleus anterior corporis trapezoidei" EXACT LATIN [FMA:72477, FMA:TA]
synonym: "nucleus ventralis corporis trapezoidei" EXACT LATIN [NeuroNames:1283]
synonym: "ventral trapezoid nucleus" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "VNTB" EXACT ABBREVIATION []
xref: BIRNLEX:2576
xref: DHBA:12461
xref: FMA:72477
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1283
xref: SCTID:369020000
xref: UMLS:C0228437 {source="BIRNLEX:2576"}
xref: UMLS:C1289449 {source="BIRNLEX:2576"}
is_a: UBERON:0007633 ! nucleus of trapezoid body
relationship: part_of UBERON:0002128 ! superior olivary complex
relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus

[Term]
id: UBERON:0002833
name: medial nucleus of trapezoid body
namespace: uberon
def: "Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. It is not clear whether a well defined nucleus is present in humans, although humans may possess scattered cells with similar input." [BIRNLEX:2595]
synonym: "MNTB" EXACT ABBREVIATION []
xref: BIRNLEX:2595
xref: DHBA:12460
xref: FMA:75732
is_a: UBERON:0007633 ! nucleus of trapezoid body
relationship: part_of UBERON:0022434 {source="Wikipedia"} ! primary superior olive

[Term]
id: UBERON:0002971
name: periolivary nucleus
namespace: uberon
def: "A nucleus of the superior olivary complex that surrounds the primary superior olivary nuclei" [Wikipedia:Superior_olivary_complex#Periolivary_nuclei]
synonym: "nuclei periolivares" EXACT LATIN [FMA:72475, FMA:TA]
synonym: "nucleus periolivaris" RELATED LATIN [NeuroNames:574]
synonym: "peri-olivary nuclei" EXACT [FMA:72475]
synonym: "peri-olivary nucleus" EXACT []
synonym: "periolivary nuclei" RELATED [BAMS:POR]
synonym: "periolivary region" RELATED [BAMS:POR]
synonym: "POI" RELATED ABBREVIATION [DHBA:12464]
synonym: "superior olivary complex periolivary region" RELATED [BAMS:POR]
xref: BAMS:PeO
xref: BAMS:POR
xref: BIRNLEX:804
xref: DHBA:12464
xref: EMAPA:35680
xref: HBA:9179
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=574 {source="BIRNLEX:804"}
xref: MA:0002757
xref: MBA:122
xref: UMLS:C0175432 {source="BIRNLEX:804"}
is_a: UBERON:0007247 ! nucleus of superior olivary complex
relationship: part_of UBERON:0002128 ! superior olivary complex

[Term]
id: UBERON:0002976
name: preolivary nucleus
namespace: uberon
synonym: "nucleus preolivaris" RELATED LATIN [NeuroNames:573]
synonym: "preolivary nuclei" EXACT [FMA:72474]
xref: BAMS:PrO
xref: BIRNLEX:814
xref: DHBA:266441709
xref: FMA:72474
xref: HBA:9180
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=573 {source="BIRNLEX:814"}
xref: UMLS:C0175431 {source="BIRNLEX:814"}
is_a: UBERON:0007247 ! nucleus of superior olivary complex
relationship: part_of UBERON:0002128 ! superior olivary complex

[Term]
id: UBERON:0002985
name: ventral nucleus of medial geniculate body
namespace: uberon
def: "Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16)." [BIRNLEX:845]
synonym: "medial geniculate complex ventral part" RELATED [BAMS:MGv]
synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217]
synonym: "medial geniculate nucleus ventral part" RELATED [BAMS:MGv]
synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217]
synonym: "medial nucleus of medial geniculate complex" EXACT [BIRNLEX:845]
synonym: "MGV" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource]
synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [BIRNLEX:845]
synonym: "nucleus geniculatus medialis fasciculosis (Hassler)" EXACT LATIN [FMA:62217, FMA:TA]
synonym: "nucleus geniculatus medialis fasciculosus (Hassler)" EXACT [BIRNLEX:845]
synonym: "nucleus geniculatus medialis pars ventralis" EXACT [BIRNLEX:845]
synonym: "nucleus ventralis corporis geniculati medialis" EXACT LATIN [FMA:62217, FMA:TA]
synonym: "ventral nucleus" RELATED [NeuroNames:357]
synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217]
synonym: "ventral nucleus of the medial geniculate body" RELATED [NeuroNames:357]
synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217]
synonym: "VMG" BROAD ABBREVIATION [BIRNLEX:845, NIFSTD:NeuroNames_abbrevSource]
xref: BAMS:MGV
xref: BAMS:MGv
xref: BAMS:VMG
xref: BIRNLEX:845
xref: BM:Die-Th-MG-MGv
xref: BTO:0002671
xref: DHBA:10438
xref: FMA:62217
xref: HBA:4445
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=357 {source="BIRNLEX:845"}
xref: MBA:1079
xref: UMLS:C0175295 {source="BIRNLEX:845"}
relationship: part_of UBERON:0001927 ! medial geniculate body

[Term]
id: UBERON:0003065
name: ciliary marginal zone
namespace: uberon
def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005]" [ZFIN:curator]
subset: efo_slim
subset: uberon_slim
synonym: "circumferential germinal zone" RELATED []
synonym: "CMZ" RELATED []
synonym: "peripheral growth zone" EXACT [ZFA:0001289]
synonym: "retinal ciliary marginal zone" EXACT [ZFA:0001289]
synonym: "retinal proliferative zone" RELATED [ZFA:0001289]
xref: AAO:0010342
xref: EFO:0003668
xref: TAO:0001289
xref: VHOG:0000088
xref: XAO:0000086
xref: ZFA:0001289
relationship: part_of UBERON:0000966 ! retina
property_value: UBPROP:0000001 "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001289", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "The retina of all vertebrates develops via similar mechanisms. Toward the end of retinal histogenesis, proliferating progenitors and newly generated cells are confined to peripheral regions of the retina. In fish and amphibians, this region is maintained after embryonic development and becomes the CMZ (ciliary margin zone). A CMZ exists in birds but compared to that of fish and amphibians this region produces much less new retina as the globe of the eye expands postnatally. At least some of the molecular mechanisms that regulate the addition of new cells in this zone appear to have been conserved from fish to birds.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000088", ontology="VHOG", source="DOI:10.1159/000057571 Reh TA, Fischer AJ, Stem cells in the vertebrate retina. Brain Behav Evol (2001)", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003069
name: otic placode
namespace: uberon
def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII[NBK]" [NCBIBook:NBK53175, Wikipedia:Otic_placode]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "auditory placode" RELATED []
synonym: "ear placode" RELATED []
synonym: "ear/otic placode" RELATED []
synonym: "octaval placode" RELATED [ISBN:0471888893]
synonym: "octaval VIII placode" RELATED [ISBN:0471888893]
synonym: "placoda otica" EXACT LATIN []
xref: AAO:0011079
xref: EFO:0003429
xref: EHDAA2:0001339
xref: EHDAA:506
xref: EMAPA:16195
xref: FMA:293973
xref: NCIT:C34239
xref: TAO:0000138
xref: UMLS:C1518677 {source="ncithesaurus:Otic_Placodes"}
xref: VHOG:0000235
xref: Wikipedia:Otic_placode
xref: XAO:0000223
xref: ZFA:0000138
relationship: part_of UBERON:0001690 ! ear
property_value: UBPROP:0000001 "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000138", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (2) neurogenic placodes (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000235", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000011 "With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991)." xsd:string {source="NCBIBook:NBK53175"}

[Term]
id: UBERON:0003090
name: supraorbital lateral line
namespace: uberon
def: "The lateral line that is located above the eye." [ISBN:0471888893, VHOG:0000128]
subset: uberon_slim
synonym: "supraorbital lateral lines" RELATED PLURAL [ZFA:0000443]
synonym: "supraorbital line" EXACT [ZFA:0000443]
xref: AAO:0011103
xref: TAO:0000443
xref: VHOG:0000128
xref: XAO:0000442
xref: ZFA:0000443
is_a: UBERON:2001470 ! anterior lateral line
relationship: part_of UBERON:2001470 {source="TAO"} ! anterior lateral line
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000443", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000001 "The lateral line that is located above the eye. [Butler_AB_and_Hodos_W, Comparative_vertebrate_neuroanatomy:_Evolution_and_Adaptation_(1996)_New_York:_Wiley-Liss_Inc., p.27][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000128", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000128", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003093
name: occipital lateral line
namespace: uberon
subset: uberon_slim
synonym: "supratemporal lateral line" RELATED []
xref: AAO:0011075
xref: TAO:0000400
xref: VHOG:0000131
xref: XAO:0000458
xref: ZFA:0000400
is_a: UBERON:2001470 ! anterior lateral line
relationship: part_of UBERON:2001470 {source="TAO"} ! anterior lateral line
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000400", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000131", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003094
name: infraorbital lateral line
namespace: uberon
def: "The lateral line that is located below the eye." [ISBN:0471888893, VHOG:0000132]
subset: uberon_slim
synonym: "infraorbital line" EXACT [ZFA:0000524]
xref: AAO:0011053
xref: TAO:0000524
xref: VHOG:0000132
xref: XAO:0000459
xref: ZFA:0000524
is_a: UBERON:2001470 ! anterior lateral line
relationship: part_of UBERON:2001470 {source="TAO"} ! anterior lateral line
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000524", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000001 "The lateral line that is located below the eye. [Butler_AB_and_Hodos_W, Comparative_vertebrate_neuroanatomy:_Evolution_and_Adaptation_(1996)_New_York:_Wiley-Liss_Inc., p.27][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000132", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000132", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003095
name: dorsal lateral line
namespace: uberon
def: "A lateral line that is located in the dorsal part of the organism." [http://orcid.org/0000-0002-6601-2165]
subset: uberon_slim
synonym: "dorsal lateral lines" RELATED PLURAL [ZFA:0005112]
xref: AAO:0011030
xref: TAO:0005112
xref: VHOG:0001677
xref: XAO:0000462
xref: ZFA:0005112
is_a: UBERON:0010202 ! lateral line
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005112", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005112", ontology="TAO"}
property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001677", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003096
name: middle lateral line
namespace: uberon
subset: uberon_slim
synonym: "middle lateral lines" RELATED PLURAL [ZFA:0000344]
xref: TAO:0000344
xref: VHOG:0000133
xref: XAO:0000463
xref: ZFA:0000344
is_a: UBERON:2001470 ! anterior lateral line
relationship: part_of UBERON:2001470 {source="TAO"} ! anterior lateral line
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000344", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: develops_from middle lateral line primordium (TAO:0005118)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000344", ontology="TAO"}
property_value: UBPROP:0000002 "relationship loss: part_of middle lateral line system (TAO:0005114)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000344", ontology="TAO"}
property_value: UBPROP:0000003 "The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000133", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.195", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003161
name: dorsal ocellus
namespace: uberon
def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli]
synonym: "dorsal ocelli" RELATED PLURAL []
synonym: "ocelli" RELATED PLURAL []
synonym: "ocellus" EXACT []
xref: BTO:0001758
xref: FBbt:00004505
xref: HAO:0000661
xref: Wikipedia:Ocellus#Ocelli
is_a: UBERON:0000963 ! head sensillum

[Term]
id: UBERON:0003162
name: lateral ocellus
namespace: uberon
def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli]
xref: FBbt:00004506
xref: HAO:0000481
xref: Wikipedia:Ocellus#Ocelli
is_a: UBERON:0003161 ! dorsal ocellus

[Term]
id: UBERON:0003211
name: median eye
namespace: uberon
def: "A median eye is an eye that is connected to a paired or unpaired median anterior neuropil of the syncerebrum by one or several median eye nerves." [PMID:21062451]
synonym: "frontal ocellus" RELATED [PMID:21062451]
synonym: "medial ocellus" EXACT [FBbt:00004507]
synonym: "median ocellus" EXACT [HAO:0000526]
xref: FBbt:00004507
xref: HAO:0000526
xref: Wikipedia:Ocellus#Ocelli
is_a: UBERON:0000970 ! eye

[Term]
id: UBERON:0003212
name: gustatory organ
namespace: uberon
def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition]
synonym: "gustatory organ system organ" EXACT [OBOL:automatic]
synonym: "gustatory system organ" EXACT [OBOL:automatic]
synonym: "organ of gustatory organ system" EXACT [OBOL:automatic]
synonym: "organ of gustatory system" EXACT [OBOL:automatic]
synonym: "organ of taste system" EXACT [OBOL:automatic]
synonym: "taste organ" EXACT []
synonym: "taste system organ" EXACT [OBOL:automatic]
xref: FBbt:00005159
xref: FMA:77853
is_a: UBERON:0000005 ! chemosensory organ

[Term]
id: UBERON:0003238
name: epithelium of superior semicircular canal
namespace: uberon
def: "An epithelium that is part of an anterior semicircular canal [Automatically generated definition]." [OBOL:automatic]
synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic]
synonym: "epithelial tissue of superior semicircular canal" EXACT [OBOL:automatic]
synonym: "epithelium of anterior semicircular canal" EXACT [OBOL:automatic]
synonym: "superior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "superior semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7806
xref: EMAPA:17301
xref: RETIRED_EHDAA2:0001961
xref: VHOG:0001039
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001841 ! anterior semicircular canal

[Term]
id: UBERON:0003239
name: epithelium of posterior semicircular canal
namespace: uberon
def: "An epithelium that is part of a posterior semicircular canal [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic]
synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7800
xref: EMAPA:17298
xref: RETIRED_EHDAA2:0001491
xref: VHOG:0000758
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001842 ! posterior semicircular canal

[Term]
id: UBERON:0003240
name: epithelium of lateral semicircular canal
namespace: uberon
def: "An epithelium that is part of a lateral semicircular canal [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic]
synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7794
xref: EMAPA:17823
xref: RETIRED_EHDAA2:0000922
xref: VHOG:0000480
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001843 ! lateral semicircular canal

[Term]
id: UBERON:0003241
name: epithelium of utricle
namespace: uberon
def: "An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "epithelium of macula of utricle of membranous labyrinth" NARROW [FMA:75604]
synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic]
synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic]
synonym: "utricle epithelial tissue" EXACT [OBOL:automatic]
synonym: "utricle epithelium" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic]
synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4730
xref: EMAPA:17295
xref: EMAPA:17298
xref: EMAPA:17301
xref: EMAPA:17820
xref: EMAPA:17823
xref: FMA:75604
xref: MA:0001204
xref: RETIRED_EHDAA2:0002155
xref: VHOG:0000634
is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
relationship: part_of UBERON:0002214 {source="FMA"} ! macula of utricle of membranous labyrinth
property_value: IAO:0000116 "TODO - check relationships w.r.t macula" xsd:string

[Term]
id: UBERON:0003242
name: epithelium of saccule
namespace: uberon
def: "An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "epithelium of macula of saccule of membranous labyrinth" RELATED [FMA:75605]
synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic]
synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic]
synonym: "saccule epithelial tissue" EXACT [OBOL:automatic]
synonym: "saccule epithelium" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4724
xref: EMAPA:17292
xref: FMA:75605
xref: MA:0001202
xref: RETIRED_EHDAA2:0001771
xref: VHOG:0000633
is_a: UBERON:0006932 ! vestibular epithelium
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
property_value: IAO:0000116 "TODO - check relationships w.r.t macula" xsd:string

[Term]
id: UBERON:0003243
name: epithelium of cochlear duct
namespace: uberon
def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Automatically generated definition]." [OBOL:automatic]
synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct epithelium" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic]
synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4722
xref: EMAPA:17600
xref: RETIRED_EHDAA2:0000264
xref: VHOG:0000640
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0003246
name: epithelium of endolymphatic sac
namespace: uberon
def: "An epithelium that is part of a endolymphatic sac [Automatically generated definition]." [OBOL:automatic]
synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic]
synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic]
xref: EHDAA:7765
xref: EMAPA:17595
xref: RETIRED_EHDAA2:0000443
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0002223 ! endolymphatic sac
property_value: IAO:0000116 "See https://github.com/obophenotype/uberon/issues/1305" xsd:string

[Term]
id: UBERON:0003249
name: epithelium of otic placode
namespace: uberon
def: "An epithelium that is part of a otic placode [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic]
synonym: "otic epithelium" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic]
synonym: "otic placode epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001341
xref: EHDAA:510
xref: EMAPA:16197
xref: VHOG:0000636
xref: ZFA:0007068
is_a: UBERON:0015807 ! ear epithelium
relationship: part_of UBERON:0003069 ! otic placode
property_value: IAO:0000116 "check ZFA, placemeant, appears to refer to both adult structures and primordium" xsd:string

[Term]
id: UBERON:0003269
name: skeletal muscle tissue of eye
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a eye [Automatically generated definition]." [OBOL:automatic]
synonym: "eye skeletal muscle" EXACT [OBOL:automatic]
synonym: "eye skeletal muscle group" RELATED [EHDAA2:0000486]
synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic]
xref: EHDAA2:0000486
xref: EHDAA:2923
xref: EMAPA:17844
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0003314
name: eye mesenchyme
namespace: uberon
def: "Mesenchyme that is part of a developing camera-type eye." [OBOL:automatic]
synonym: "mesenchyme of eye" EXACT [OBOL:automatic]
xref: EHDAA2:0000485
xref: EHDAA:2910
xref: EMAPA:16673
xref: VHOG:0001084
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: IAO:0000116 "TODO - change mesenchyme relationships to precursor_of" xsd:string

[Term]
id: UBERON:0003325
name: mesenchyme of pinna
namespace: uberon
def: "Mesenchyme that is part of a developing pinna [Automatically generated definition]." [OBOL:automatic]
synonym: "auricle mesenchyme" EXACT [OBOL:automatic]
synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic]
synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic]
synonym: "auricula (auris externa) mesenchyme" EXACT [OBOL:automatic]
synonym: "auricula mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle of ear" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle of external ear" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricula" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricula (auris externa)" EXACT [OBOL:automatic]
synonym: "mesenchyme of pinna of ear" EXACT [OBOL:automatic]
synonym: "pinna mesenchyme" EXACT [OBOL:automatic]
synonym: "pinna of ear mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0001469
xref: EHDAA:8981
xref: EMAPA:17591
xref: VHOG:0000747
relationship: part_of UBERON:0001757 ! pinna
property_value: UBPROP:0000012 "EMAPA divides this spatially into condensation + rest, and temporally into mesenchyme and cartilage condensation" xsd:string {external_ontology="EMAPA"}

[Term]
id: UBERON:0003356
name: epithelium of nasal septum
namespace: uberon
def: "An epithelium that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic]
synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasal septum epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18442
is_a: UBERON:0019306 ! nose epithelium
relationship: part_of UBERON:0001706 ! nasal septum

[Term]
id: UBERON:0003357
name: epithelium of tongue
namespace: uberon
def: "An epithelium that is part of a tongue [Automatically generated definition]." [OBOL:automatic]
comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies.
subset: pheno_slim
synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic]
synonym: "lingual epithelium" RELATED [BTO:0000992]
synonym: "tongue epithelial tissue" EXACT [OBOL:automatic]
synonym: "tongue epithelium" EXACT [OBOL:automatic]
xref: BTO:0000992
xref: CALOHA:TS-1051
xref: EHDAA2:0004598
xref: EMAPA:17881
xref: FMA:284658
xref: MA:0001592
xref: NCIT:C49300
xref: UMLS:C1710436 {source="ncithesaurus:Tongue_Epithelium"}
is_a: UBERON:0019304 ! sensory organ epithelium
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003362
name: epithelium of endolymphatic duct
namespace: uberon
def: "An epithelium that is part of a endolymphatic duct [Automatically generated definition]." [OBOL:automatic]
synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic]
xref: EMAPA:18582
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001860 ! endolymphatic duct

[Term]
id: UBERON:0003363
name: epithelium of ductus reuniens
namespace: uberon
def: "An epithelium that is part of a ductus reuniens [Automatically generated definition]." [OBOL:automatic]
synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic]
xref: EMAPA:17289
is_a: UBERON:0006932 ! vestibular epithelium
relationship: part_of UBERON:0001861 ! ductus reuniens

[Term]
id: UBERON:0003367
name: epithelium of vomeronasal organ
namespace: uberon
def: "An epithelium that is part of a vomeronasal organ [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic]
synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "Jacobson's organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "Jacobson's organ epithelium" EXACT [OBOL:automatic]
synonym: "vomeronasal epithelium" EXACT [EHDAA2:0004102]
synonym: "vomeronasal organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "vomeronasal organ epithelium" EXACT [OBOL:automatic]
synonym: "vomeronasal organ sensory epithelium" EXACT [MA:0001328]
xref: EHDAA2:0004102
xref: EMAPA:18444
xref: FMA:301283
xref: MA:0001328
is_a: UBERON:0019306 ! nose epithelium
relationship: part_of UBERON:0002255 ! vomeronasal organ
property_value: IAO:0000116 "TODO - add cell types" xsd:string

[Term]
id: UBERON:0003386
name: smooth muscle of eye
namespace: uberon
def: "any of the striated muscles that move the eye and include: superior rectus, inferior rectus, medial rectus, lateral rectus, superior oblique, inferior oblique, retractor bulbi" [MGI:cwg, MP:0005247]
subset: pheno_slim
synonym: "ocular smooth muscle" EXACT [MA:0001268]
xref: EMAPA:18807
xref: MA:0001268
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: IAO:0000116 "Not clear if we need this and intra-ocular muscle. See issue #331. MA includes ciliary and iris smooth muscle" xsd:string

[Term]
id: UBERON:0003407
name: cartilage of nasal septum
namespace: uberon
def: "A cartilage that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "cartilago septal nasi" EXACT [FMA:59503]
synonym: "nasal septum cartilage" EXACT [OBOL:automatic]
synonym: "septal nasal cartilage" EXACT [FMA:59503]
xref: EMAPA:25091
xref: FMA:59503
xref: MA:0003138
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0001706 ! nasal septum

[Term]
id: UBERON:0003409
name: gland of tongue
namespace: uberon
def: "Any of the mucous, serous, or mixed glands that empty their secretions onto the surface of the tongue." [http://www.merriam-webster.com/medical/lingual%20gland]
synonym: "lingual gland" EXACT [OBOL:automatic]
synonym: "tongue gland" EXACT [OBOL:automatic]
xref: EMAPA:25097
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0003415
name: mesenchyme of nasal septum
namespace: uberon
def: "Mesenchyme that is part of a developing nasal septum [Automatically generated definition]." [OBOL:automatic]
synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18443
xref: FMA:312700
relationship: part_of UBERON:0001706 ! nasal septum

[Term]
id: UBERON:0003416
name: mesenchyme of tongue
namespace: uberon
def: "Mesenchyme that is part of a developing tongue [Automatically generated definition]." [OBOL:automatic]
synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614]
xref: EHDAA2:0004614
xref: EMAPA:17882
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 ! tongue
property_value: IAO:0000116 "TODO - develops_from" xsd:string

[Term]
id: UBERON:0003421
name: mesenchyme of vomeronasal organ
namespace: uberon
def: "Mesenchyme that is part of a developing vomeronasal organ [Automatically generated definition]." [OBOL:automatic]
synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "vomeronasal mesenchyme" EXACT [EHDAA2:0004103]
synonym: "vomeronasal organ mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0004103
xref: EMAPA:18445
relationship: part_of UBERON:0002255 {source="EHDAA2"} ! vomeronasal organ

[Term]
id: UBERON:0003484
name: eye sebaceous gland
namespace: uberon
def: "A sebaceous gland that is part of a camera-type eye. Example: a tarsal gland." [http://orcid.org/0000-0002-6601-2165]
subset: organ_slim
synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic]
synonym: "sebaceous gland of vertebrate eye" EXACT [OBOL:automatic]
synonym: "vertebrate eye sebaceous gland" EXACT [OBOL:automatic]
xref: EMAPA:37531 {source="MA:th"}
xref: MA:0002452
is_a: UBERON:0003605 ! eye skin gland
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0003500
name: corneal blood vessel
namespace: uberon
def: "A blood vessel that is part of a cornea [Automatically generated definition]." [https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/tracker/index.php?func=detail&aid=3564332&group_id=36855&atid=440764]
synonym: "blood vessel of cornea" EXACT [OBOL:automatic]
synonym: "cornea blood vessel" EXACT [OBOL:automatic]
xref: EMAPA:36611
xref: MA:0001241
relationship: part_of UBERON:0000964 ! cornea
property_value: IAO:0000116 "follow up on tracker item" xsd:string
property_value: RO:0002175 NCBITaxon:9775 {source="PMID:17051153"}

[Term]
id: UBERON:0003501
name: retina blood vessel
namespace: uberon
def: "A blood vessel that is part of a retina [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic]
synonym: "blood vessel of retina" EXACT [OBOL:automatic]
synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic]
synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic]
synonym: "retinal blood vessel" EXACT [OBOL:automatic]
synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic]
xref: EMAPA:36520
xref: GAID:509
xref: MA:0001317
xref: MESH:D012171
xref: SCTID:280692003
xref: XAO:0004153
relationship: part_of UBERON:0000966 ! retina
relationship: part_of UBERON:0004864 ! vasculature of retina

[Term]
id: UBERON:0003510
name: eyelid blood vessel
namespace: uberon
def: "A blood vessel that is part of a eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "blepharon blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of blepharon" EXACT [OBOL:automatic]
synonym: "blood vessel of eyelid" EXACT [OBOL:automatic]
xref: EMAPA:37388 {source="MA:th"}
xref: MA:0001250
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0003511
name: iris blood vessel
namespace: uberon
def: "A blood vessel that is part of a iris [Automatically generated definition]." [OBOL:automatic]
subset: vertebrate_core
synonym: "blood vessel of iris" EXACT [OBOL:automatic]
xref: EMAPA:37387 {source="MA:th"}
xref: MA:0001290
xref: ZFA:0005568
relationship: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0004118 ! vasculature of iris

[Term]
id: UBERON:0003581
name: eyelid connective tissue
namespace: uberon
def: "A portion of connective tissue that is part of a eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "blepharon connective tissue" EXACT [OBOL:automatic]
synonym: "connective tissue of blepharon" EXACT [OBOL:automatic]
synonym: "connective tissue of eyelid" EXACT [OBOL:automatic]
xref: EMAPA:37532 {source="MA:th"}
xref: MA:0001251
xref: NCIT:C49482
xref: UMLS:C1707989 {source="ncithesaurus:Eyelid_Connective_Tissue"}
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0003605
name: eye skin gland
namespace: uberon
def: "A skin gland that is part of a camera-type eye [Automatically generated definition]." [OBOL:automatic]
subset: organ_slim
synonym: "camera-type eye skin gland" EXACT [OBOL:automatic]
synonym: "camera-type eye skin glands" EXACT [OBOL:automatic]
synonym: "camera-type eye skin glands set" EXACT [OBOL:automatic]
synonym: "skin gland of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin gland of vertebrate eye" EXACT [OBOL:automatic]
synonym: "skin glands of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin glands of vertebrate eye" EXACT [OBOL:automatic]
synonym: "skin glands set of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin glands set of vertebrate eye" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin gland" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin glands" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin glands set" EXACT [OBOL:automatic]
xref: EMAPA:37530 {source="MA:th"}
xref: MA:0002451
is_a: UBERON:0004859 ! eye gland
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0003723
name: vestibular nerve
namespace: uberon
def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [Wikipedia:Vestibular_nerve]
subset: pheno_slim
synonym: "nervus vestibularis" RELATED LATIN [Wikipedia:Vestibular_nerve]
synonym: "scarpa ganglion" RELATED [GAID:840]
synonym: "scarpa's ganglion" RELATED [GAID:840]
synonym: "scarpas ganglion" RELATED [GAID:840]
synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401]
synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401]
synonym: "vestibulocochlear nerve vestibular root" RELATED [BAMS:vVIIIn]
synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111]
xref: BAMS:vVIIIn
xref: DHBA:12869
xref: EHDAA2:0002200
xref: EHDAA:3749
xref: EMAPA:17803
xref: FMA:53401
xref: GAID:840
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1389
xref: MA:0001111
xref: MBA:413
xref: MESH:D014725
xref: NCIT:C12820
xref: OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA
xref: SCTID:362464003
xref: UMLS:C0042598 {source="ncithesaurus:Vestibular_Nerve"}
xref: VHOG:0001181
xref: Wikipedia:Vestibular_nerve
relationship: part_of UBERON:0001648 ! vestibulocochlear nerve
relationship: part_of UBERON:0004681 ! vestibular system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg xsd:anyURI

[Term]
id: UBERON:0003844
name: upper eyelid epithelium
namespace: uberon
def: "An epithelium that is part of an upper eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic]
synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of upper eyelid" EXACT [OBOL:automatic]
synonym: "superior eyelid epithelial tissue" EXACT [OBOL:automatic]
synonym: "superior eyelid epithelium" EXACT [OBOL:automatic]
synonym: "upper eyelid epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0002116
xref: EMAPA:17835
xref: VHOG:0000638
is_a: UBERON:0035034 ! eyelid epithelium
relationship: part_of UBERON:0001712 ! upper eyelid

[Term]
id: UBERON:0003845
name: lower eyelid epithelium
namespace: uberon
def: "An epithelium that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of lower eyelid" EXACT [OBOL:automatic]
synonym: "inferior eyelid epithelial tissue" EXACT [OBOL:automatic]
synonym: "inferior eyelid epithelium" EXACT [OBOL:automatic]
synonym: "lower eyelid epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0001016
xref: EMAPA:17832
xref: VHOG:0000637
is_a: UBERON:0035034 ! eyelid epithelium
relationship: part_of UBERON:0001713 ! lower eyelid

[Term]
id: UBERON:0003857
name: upper eyelid mesenchyme
namespace: uberon
def: "Mesenchyme that is part of a developing upper eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic]
synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic]
synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0002117
xref: EHDAA:9051
xref: EMAPA:17836
xref: VHOG:0001093
is_a: UBERON:0010330 ! eyelid mesenchyme
relationship: part_of UBERON:0001712 ! upper eyelid

[Term]
id: UBERON:0003858
name: lower eyelid mesenchyme
namespace: uberon
def: "Mesenchyme that is part of a developing lower eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic]
xref: EHDAA2:0001017
xref: EHDAA:9045
xref: EMAPA:17833
xref: VHOG:0001036
is_a: UBERON:0010330 ! eyelid mesenchyme
relationship: part_of UBERON:0001713 ! lower eyelid

[Term]
id: UBERON:0003902
name: retinal neural layer
namespace: uberon
def: "The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407]
subset: pheno_slim
subset: vertebrate_core
synonym: "neural layer of retina" EXACT [FMA:58628]
synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046]
synonym: "neural retinal epithelium" RELATED [MA:000027]
synonym: "neuroretina" EXACT [ZFA:0000046]
synonym: "stratum nervosum (retina)" EXACT [FMA:58628]
synonym: "stratum nervosum retinae" EXACT LATIN [FMA:58628, FMA:TA]
xref: AAO:0011095
xref: BTO:0000929
xref: CALOHA:TS-0685
xref: EHDAA2:0001253
xref: EHDAA:4763
xref: EMAPA:17171
xref: EMAPA:18590
xref: FMA:58628
xref: MA:0000277
xref: NCIT:C33166
xref: TAO:0000046
xref: UMLS:C1518263 {source="ncithesaurus:Neural_Retina"}
xref: VHOG:0000535
xref: XAO:0003216
xref: ZFA:0000046
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0001781 ! layer of retina
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000535", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003925
name: photoreceptor inner segment layer
namespace: uberon
def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [ZFIN:curator]
subset: vertebrate_core
synonym: "photoreceptor inner segment layers" RELATED PLURAL [ZFA:0001465]
synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471]
xref: EMAPA:35687
xref: MA:0002471
xref: TAO:0001465
xref: VHOG:0001172
xref: ZFA:0001465
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001172", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003926
name: photoreceptor outer segment layer
namespace: uberon
subset: vertebrate_core
synonym: "photoreceptor outer segment layers" RELATED PLURAL [ZFA:0001466]
synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472]
xref: EMAPA:35688
xref: MA:0002472
xref: TAO:0001466
xref: VHOG:0001173
xref: ZFA:0001466
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001173", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0003942
name: somatic sensory system
namespace: uberon
alt_id: UBERON:0014511
def: "The sensory system for the sense of touch and pain." [NLXANAT:090818]
subset: pheno_slim
synonym: "somatic sensory system" EXACT []
synonym: "somatosensory system" EXACT [NLXANAT:090818]
synonym: "system for detection of somatic senses" EXACT []
xref: EMAPA:37954 {source="MA:th"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2887
xref: NLXANAT:090818
xref: Wikipedia:Somatosensory_system
is_a: UBERON:0001032 ! sensory system
property_value: UBPROP:0000001 "The neural tissue involved in the transmission of sensory signals" xsd:string {source="MP:0000959"}
property_value: UBPROP:0000012 "MP defines this in a may more appropriate to somatosensory cortex" xsd:string {external_ontology="MP"}

[Term]
id: UBERON:0003950
name: inner ear canal
namespace: uberon
def: "The tubular ducts of the inner ear" [MP:0002729]
subset: pheno_slim
xref: EMAPA:37882 {source="MA:th"}
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0003951
name: ocular fundus
namespace: uberon
def: "The posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope" [MP:0002864, Wikipedia:Fundus_(eye)]
subset: pheno_slim
synonym: "eye fundus" EXACT []
synonym: "fundus" EXACT [HP:0001098]
synonym: "fundus oculi" EXACT []
synonym: "fundus of eye" EXACT []
xref: EMAPA:37916 {source="MA:th"}
xref: GAID:908
xref: galen:FundusOculi
xref: MESH:D005654
xref: NCIT:C13378
xref: RETIRED_EHDAA2:0000583
xref: SCTID:362519003
xref: UMLS:C0740422 {source="ncithesaurus:Fundus"}
xref: Wikipedia:Fundus_(eye)
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
property_value: IAO:0000116 "TODO - check relationships" xsd:string

[Term]
id: UBERON:0003952
name: anterior stroma of cornea
namespace: uberon
def: "The anterior segment of the lamellated connective tissue layer of the cornea" [MP:0003093]
subset: pheno_slim
synonym: "anterior stroma" BROAD [MP:0003093]
synonym: "cornea anterior stroma" EXACT [MP:0003093]
xref: EMAPA:37414 {source="MA:th"}
relationship: part_of UBERON:0001777 ! substantia propria of cornea

[Term]
id: UBERON:0003953
name: posterior stroma of cornea
namespace: uberon
def: "The posterior segment of the lamellated connective tissue layer of the cornea" [MP:0003094]
subset: pheno_slim
synonym: "cornea posterior stroma" EXACT [MP:0003094]
synonym: "posterior stroma" BROAD [MP:0003094]
xref: EMAPA:37415 {source="MA:th"}
relationship: part_of UBERON:0001777 ! substantia propria of cornea

[Term]
id: UBERON:0003956
name: aqueous drainage system
namespace: uberon
def: "The structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [MP:0005198]
subset: pheno_slim
xref: EMAPA:37427 {source="MA:th"}
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0001768 ! uvea

[Term]
id: UBERON:0003957
name: Bruch's membrane
namespace: uberon
def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina." [https://github.com/obophenotype/uberon/issues/14, MP:0005239]
subset: pheno_slim
subset: vertebrate_core
synonym: "basal lamina of choroid" RELATED [FMA:58438]
synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250]
synonym: "Bruch's basal membrane" EXACT [FMA:58438]
synonym: "lamina basalis (choroid)" EXACT [FMA:58438]
synonym: "lamina basilis" BROAD [FMA:58438]
synonym: "lamina choroideae basalis" EXACT LATIN [FMA:58438, FMA:TA]
synonym: "vitreous lamina" EXACT [ZFA:0005562]
xref: EMAPA:37450 {source="MA:th"}
xref: FMA:58438
xref: GAID:914
xref: MESH:D016570
xref: SCTID:280652000
xref: Wikipedia:Bruch's_membrane
xref: ZFA:0005562
relationship: part_of UBERON:0001776 {source="FMA", source="ZFA"} ! optic choroid
relationship: part_of UBERON:0013399 ! blood vessel layer of choroid
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos
property_value: seeAlso https://github.com/obophenotype/uberon/issues/14 xsd:anyURI
property_value: UBPROP:0000010 "Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid[WP]" xsd:string
property_value: UBPROP:0000011 "Bruch's membrane is present by midterm in fetal development as an elastic sheet." xsd:string

[Term]
id: UBERON:0003966
name: gonial bone
namespace: uberon
def: "investing bone that lies on the surface of the malleus." [MP:0008380]
subset: pheno_slim
synonym: "gonium" EXACT [MP:0008380]
xref: EMAPA:37874 {source="MA:th"}
relationship: part_of UBERON:0001689 ! malleus bone
property_value: IAO:0000116 "To be revisted after a review of auditory ossicles" xsd:string

[Term]
id: UBERON:0003976
name: saccule duct
namespace: uberon
def: "The saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct" [MP:0009259]
subset: pheno_slim
synonym: "saccular duct" EXACT [MP:0009259]
synonym: "saccular part of utriculosaccular duct" EXACT []
xref: EMAPA:37982 {source="MA:th"}
xref: FMA:77825
xref: SCTID:279829002
relationship: part_of UBERON:0011774 ! utriculosaccular duct

[Term]
id: UBERON:0003977
name: utricle duct
namespace: uberon
def: "The utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct" [MP:0009260]
subset: pheno_slim
synonym: "utricular duct" EXACT [MP:0009260]
synonym: "utricular part of utriculosaccular duct" EXACT []
xref: EMAPA:37981 {source="MA:th"}
xref: FMA:77824
xref: SCTID:279819009
relationship: part_of UBERON:0011774 ! utriculosaccular duct

[Term]
id: UBERON:0003979
name: utricle valve
namespace: uberon
def: "The utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals" [MP:0009261]
subset: pheno_slim
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth

[Term]
id: UBERON:0004000
name: tarsal gland acinus
namespace: uberon
def: "A sac-like structure comprising a sebaceous gland." [MP:0009935]
subset: pheno_slim
synonym: "acinus of tarsal gland" EXACT []
synonym: "Meibomian gland acinus" EXACT []
synonym: "palpebral gland acinus" RELATED []
xref: EMAPA:37972 {source="MA:th"}
relationship: part_of UBERON:0001818 ! tarsal gland

[Term]
id: UBERON:0004012
name: golgi tendon organ
namespace: uberon
def: "The sensory organ in muscle that is involved in regulating muscle tension" [MP:0000999]
subset: pheno_slim
synonym: "neurotendinous ending" EXACT [FMA:83608]
synonym: "neurotendinous organ of golgi" EXACT [FMA:83608]
xref: EMAPA:37873 {source="MA:th"}
xref: FMA:83608
xref: NCIT:C13826
xref: UMLS:C0027929 {source="ncithesaurus:Golgi_Tendon_Organ"}
xref: Wikipedia:Golgi_tendon_organ
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0004019
name: baroreceptor
namespace: uberon
def: "The sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure" [MP:0004118]
comment: WP classifies as mechanoreceptor
subset: pheno_slim
synonym: "baroceptor" RELATED [Wikipedia:Baroreceptor]
synonym: "pressoreceptor" RELATED [Wikipedia:Baroreceptor]
synonym: "stretch receptor" RELATED []
synonym: "vascular stretch receptor" RELATED [MESH:A08.800.050.800.900.700]
xref: EMAPA:36597
xref: FMA:85601
xref: MA:0003009
xref: MESH:D011311
xref: Wikipedia:Baroreceptor
is_a: UBERON:0018389 {source="FMA"} ! interoceptor
property_value: seeAlso https://github.com/obophenotype/uberon/issues/510 xsd:anyURI

[Term]
id: UBERON:0004029
name: canal of Schlemm
namespace: uberon
def: "The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation" [MP:0005204, Wikipedia:Schlemm's_canal]
subset: pheno_slim
synonym: "Schlemm's canal" EXACT []
synonym: "scleral sinus" EXACT [FMA:51873]
synonym: "scleral venous sinus" EXACT [FMA:51873]
synonym: "sinus venosus of sclera" EXACT [FMA:51873]
synonym: "sinus venosus sclerae" EXACT LATIN [Wikipedia:Schlemm's_canal]
xref: EMAPA:37456 {source="MA:th"}
xref: FMA:51873
xref: NCIT:C32256
xref: SCTID:280605006
xref: UMLS:C0229108 {source="ncithesaurus:Canal_of_Schlemm"}
xref: Wikipedia:Schlemm's_canal
xref: ZFA:0005829
relationship: part_of UBERON:0003956 ! aqueous drainage system

[Term]
id: UBERON:0004030
name: aqueous vein
namespace: uberon
def: "A vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)" [MP:0005207]
comment: a mixture of episcleral venous blood and aqueous humor mix in this combined channel[http://www.atlasophthalmology.com]
subset: pheno_slim
xref: EMAPA:37428 {source="MA:th"}
relationship: part_of UBERON:0003956 ! aqueous drainage system
property_value: depicted:by http://www.atlasophthalmology.com/media/Aqeous+Vein+Prep.m4v xsd:anyURI

[Term]
id: UBERON:0004043
name: semicircular canal ampulla
namespace: uberon
def: "The spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals" [MP:0008488, Wikipedia:Osseous_ampullae]
subset: pheno_slim
synonym: "ampullae osseae" RELATED LATIN [Wikipedia:Osseous_ampullae]
synonym: "membraneous ampulla of the semicircular duct" RELATED [MP:0008488]
synonym: "semicircular duct ampulla" RELATED [MA:0002770]
xref: EMAPA:32831
xref: MA:0002770
xref: SCTID:279759001
xref: Wikipedia:Osseous_ampullae
relationship: part_of UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001856 {source="MA"} ! semicircular duct
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg xsd:anyURI
property_value: IAO:0000116 "TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal'" xsd:string

[Term]
id: UBERON:0004101
name: nasolabial region
namespace: uberon
def: "." [HP:0005289]
subset: pheno_slim
relationship: part_of UBERON:0000004 ! nose

[Term]
id: UBERON:0004106
name: crus of ear
namespace: uberon
def: "horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895]
subset: pheno_slim
synonym: "crus helicis" EXACT LATIN [FMA:61024, FMA:TA]
synonym: "crus of helical part of auricular cartilage" EXACT []
synonym: "crus of helix" EXACT [FMA:61024]
xref: FMA:61024
xref: NCIT:C32410
xref: SCTID:362547004
xref: UMLS:C0229319 {source="ncithesaurus:Crus_Helicis"}
is_a: UBERON:0001867 ! cartilage of external ear
relationship: part_of UBERON:0001848 ! auricular cartilage

[Term]
id: UBERON:0004110
name: midnasal cavity
namespace: uberon
def: "An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]." [HP:0010641]
subset: pheno_slim
xref: FMA:59675
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001707 ! nasal cavity

[Term]
id: UBERON:0004113
name: muscle of auditory ossicle
namespace: uberon
alt_id: UBERON:0004112
def: "A muscle of the tympanic cavity that attaches to an auditory ossicle." [http://orcid.org/0000-0002-6601-2165]
synonym: "auditory ossicles muscle" EXACT [FMA:49026]
synonym: "muscle of auditory ossicles" EXACT [FMA:49026]
synonym: "muscle of middle ear" RELATED []
synonym: "muscle of tympanic cavity" EXACT []
synonym: "ossicular muscle" EXACT [FMA:49026]
synonym: "tympanic cavity muscle" EXACT [MA:0000256]
xref: EMAPA:37776 {source="MA:th"}
xref: FMA:49026
xref: MA:0000256
xref: NCIT:C33148
xref: SCTID:244778009
xref: UMLS:C1513769 {source="ncithesaurus:Muscle_of_the_Tympanum"}
xref: Wikipedia:Muscles_of_auditory_ossicles
relationship: part_of UBERON:0001756 ! middle ear
property_value: UBPROP:0000009 "attenuate low-frequency sounds, reduce masking of high-frequency sounds by low-frequency sounds, frequency-selection filter" xsd:string

[Term]
id: UBERON:0004114
name: tympanic cavity
namespace: uberon
def: "small cavity surrounding the bones of the middle ear." [Wikipedia:Tympanic_cavity]
synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "cavitas tympani" EXACT LATIN [Wikipedia:Tympanic_cavity]
synonym: "cavitas tympanica" RELATED [BTO:0002098]
synonym: "cavity of middle ear" EXACT [OBOL:automatic]
synonym: "middle ear cavity" EXACT [OBOL:automatic]
synonym: "middle-ear cavity" EXACT [OBOL:automatic]
synonym: "tympanum" RELATED [BTO:0002098]
xref: BTO:0002098
xref: EHDAA2:0004119
xref: EMAPA:37778 {source="MA:th"}
xref: EV:0100358
xref: FMA:56461
xref: SCTID:362551002
xref: Wikipedia:Tympanic_cavity
relationship: part_of UBERON:0001756 ! middle ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI

[Term]
id: UBERON:0004115
name: blood vessel of tympanic cavity
namespace: uberon
def: "A blood vessel that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic]
synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "blood vessel of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "blood vessel of middle ear cavity" EXACT [OBOL:automatic]
synonym: "cavity of middle ear blood vessel" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity blood vessel" EXACT [OBOL:automatic]
synonym: "middle ear blood vessel" EXACT []
synonym: "middle ear cavity blood vessel" EXACT [OBOL:automatic]
synonym: "tympanic cavity blood vessel" EXACT []
xref: EMAPA:37775 {source="MA:th"}
xref: MA:0001219
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0004116
name: nerve of tympanic cavity
namespace: uberon
def: "A nerve that is part of a tympanic cavity [Automatically generated definition]." [OBOL:automatic]
synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic]
synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic]
synonym: "middle ear cavity nerve" EXACT [OBOL:automatic]
synonym: "nerve of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "nerve of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "nerve of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "nerve of middle ear cavity" EXACT [OBOL:automatic]
synonym: "tympanic cavity nerve" EXACT []
synonym: "tympanic cavity nerves" EXACT [MA:0001222]
xref: EMAPA:37777 {source="MA:th"}
xref: MA:0001222
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0004118
name: vasculature of iris
namespace: uberon
def: "A vasculature that is part of a iris [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "iris blood vessels" EXACT [ZFA:0005568]
synonym: "iris vascular network" EXACT [OBOL:automatic]
synonym: "iris vasculature" EXACT []
synonym: "vascular network of iris" EXACT [OBOL:automatic]
xref: ZFA:0005568
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001769 ! iris

[Term]
id: UBERON:0004187
name: Harderian gland
namespace: uberon
def: "The Harderian gland is an anterior orbital gland usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]." [GO:0070384, Wikipedia:Harderian_gland]
subset: organ_slim
subset: pheno_slim
synonym: "deep gland of the nictitating membrane" RELATED [PMID:7559104]
synonym: "gland of Hardarian" EXACT []
synonym: "glandula palpebra tertia profundus" EXACT LATIN [PMID:7559104]
synonym: "Hardarian gland" EXACT []
synonym: "Harder's gland" EXACT []
xref: BTO:0000557
xref: EMAPA:19153
xref: GAID:1219
xref: MA:0001247
xref: MESH:D006243
xref: NCIT:C77619
xref: SCTID:41474005
xref: UMLS:C0018597 {source="ncithesaurus:Harderian_Gland"}
xref: Wikipedia:Harderian_gland
is_a: UBERON:0004859 ! eye gland
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: RO:0002161 NCBITaxon:33554 {source="PMID:7559104"}
property_value: RO:0002161 NCBITaxon:9397 {source="PMID:7559104"}
property_value: RO:0002161 NCBITaxon:9443 {source="PMID:7559104"}
property_value: RO:0002161 NCBITaxon:9606 {notes="may be transient in embryos", source="PMID:7559104"}
property_value: RO:0002161 NCBITaxon:9787 {source="PMID:7559104"}
property_value: RO:0002175 NCBITaxon:10047 {source="ISBN:1118473523"}
property_value: RO:0002175 NCBITaxon:8293 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"}
property_value: RO:0002175 NCBITaxon:8342 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"}
property_value: RO:0002175 NCBITaxon:9263 {source="https://sourceforge.net/p/geneontology/ontology-requests/10639"}
property_value: RO:0002175 NCBITaxon:9397 {source="PMID:20665821", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"}
property_value: RO:0002175 NCBITaxon:9608 {source="PMID:14803383", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"}
property_value: RO:0002175 NCBITaxon:9681 {source="PMID:6997222 ", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"}
property_value: RO:0002175 NCBITaxon:9845 {source="PMID:12969024", source="https://sourceforge.net/p/geneontology/ontology-requests/10639"}
property_value: UBPROP:0000008 "In mouse the HG appears in the posterior part of eye region, in the form of nonluminated tubules between the sixteenth and eighteenth days of gestation. At birth it is still not differentiated histologically. In birds the HG originates from the conjunctival epithelium at a late embryonic stage. In the English sparrow, Passer domesticus (incubation period of about 13 days), it appears between the seventh and the eighth days of incubation. In the chick embryo (incubation period of about 21 days) it originates between the eleventh and the twelfth days.[PMID:9156609]" xsd:string
property_value: UBPROP:0000008 "In the limbless, burrowing amphibian Apoda (Caecilians) the harderian gland is very large, filling much of the orbit and lubricating a retractile sensory tentacle rather than the eye (Walls, 1942; Wolff, 1948)." xsd:string
property_value: UBPROP:0000009 "In mammals, the gland excretes an oily substance used to preen the fur[WP]" xsd:string
property_value: UBPROP:0000009 "In some animals it acts as an accessory to the lacrimal gland, secreting fluid that eases movement of the nictitating membrane[WP]" xsd:string
property_value: UBPROP:0000009 "The functions attributed to the gland are many and diverse. Amongst these, it has been held to be a site of immune responses, a source of thermoregulatory lipids, a source of pheromones, a photoprotective organ and part of a retinal-pineal axis. It is arguably the last remaining large organ of widespread dis- tribution among the vertebrates to which we cannot confidently ascribe a confirmed function." xsd:string {source="PMID:7559104"}
property_value: UBPROP:0000010 "The harderian gland may be compound tubular (MacLeod, 1880; Paule, 1957) or compound tubuloacinar/tubuloalveolar (Aureli, 1957; Hoffman, 1971)." xsd:string {source="PMID:7559104"}

[Term]
id: UBERON:0004234
name: iris smooth muscle
namespace: uberon
def: "A portion of smooth muscle tissue that is part of a iris [Automatically generated definition]." [OBOL:automatic]
synonym: "involuntary muscle of iris" EXACT [OBOL:automatic]
synonym: "iridial smooth muscle" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "iris involuntary muscle" EXACT [OBOL:automatic]
synonym: "iris non-striated muscle" EXACT [OBOL:automatic]
synonym: "iris smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of iris" EXACT [OBOL:automatic]
xref: BTO:0000655
xref: EMAPA:35448
xref: FMA:312338
xref: MA:0001270
is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye
relationship: part_of UBERON:0001606 ! muscle of iris
relationship: part_of UBERON:0001769 ! iris
property_value: IAO:0000116 "see notes for muscle of iris." xsd:string

[Term]
id: UBERON:0004277
name: eye muscle
namespace: uberon
def: "A muscle that is part of the eye region." [OBOL:automatic]
subset: pheno_slim
xref: AAO:0000156
xref: EMAPA:35335
xref: MA:0000271
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycB4rvYA8cJwpEbGdrcN5Y29ycA
relationship: part_of UBERON:0000019 {source="MA"} ! camera-type eye

[Term]
id: UBERON:0004367
name: Descemet's membrane
namespace: uberon
def: "A transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]." [https://github.com/obophenotype/uberon/issues/15, MP:0004285]
comment: The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed)
subset: pheno_slim
subset: vertebrate_core
synonym: "Descemet membrane" EXACT []
synonym: "Descemet's posterior elastic lamina" EXACT [FMA:58309]
synonym: "lamina limitans posterior" EXACT [FMA:58309]
synonym: "lamina limitans posterior corneae" EXACT LATIN [FMA:58309, FMA:TA]
synonym: "posterior limiting lamina" EXACT [MA:0001246]
synonym: "posterior limiting lamina of cornea" EXACT [FMA:58309]
synonym: "posterior limiting membrane" EXACT [ZFA:0001686]
xref: EMAPA:18804
xref: FMA:58309
xref: GAID:894
xref: MA:0001246
xref: MESH:D003886
xref: NCIT:C32454
xref: SCTID:281076002
xref: TAO:0002157
xref: UMLS:C0011665 {source="ncithesaurus:Descemet_s_Membrane"}
xref: Wikipedia:Descemet%27s_membrane
xref: ZFA:0001686
relationship: part_of UBERON:0000964 ! cornea
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos
property_value: seeAlso https://github.com/obophenotype/uberon/issues/15 xsd:anyURI
property_value: UBPROP:0000001 "Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.[ZFIN]" xsd:string {date_retrieved="2016-05-01", external_class="TAO:0002157", ontology="ZFIN", source="ORCiD:0000-0001-9114-8737", source="ZFIN:ZDB-PUB-061010-3"}

[Term]
id: UBERON:0004370
name: anterior limiting lamina of cornea
namespace: uberon
def: "A transparent homogeneous acellular layer, 6 to 9 um thick, lying between the basal lamina of the outer layer of stratified epithelium and the substantia propria of the cornea; it is considered to be a basement membrane." [ncithesaurus:Bowman_s_Membrane]
subset: pheno_slim
subset: vertebrate_core
synonym: "anterior elastic lamina" EXACT [ZFA:0001684]
synonym: "anterior limiting lamina" EXACT [MA:0001240]
synonym: "anterior limiting lamina of cornea" EXACT [FMA:58273]
synonym: "anterior limiting membrane" RELATED [ZFA:0001684]
synonym: "Bowman's anterior elastic lamina" EXACT [FMA:58273]
synonym: "Bowman's layer" EXACT [FMA:58273]
synonym: "Bowman's membrane" EXACT [FMA:58273]
synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273]
synonym: "lamina limitans anterior corneae" EXACT LATIN [FMA:58273, FMA:TA]
synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957]
xref: FMA:58273
xref: MA:0001240
xref: NCIT:C32226
xref: SCTID:281075003
xref: TAO:0002155
xref: UMLS:C0229127 {source="ncithesaurus:Bowman_s_Membrane"}
xref: Wikipedia:Bowman%27s_membrane
xref: ZFA:0001684
relationship: part_of UBERON:0000964 ! cornea
property_value: UBPROP:0000001 "Acellular anatomical structure that is the zone of collagen fibers adjacent the basement membrane of the corneal epithelium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002155", ontology="TAO", source="ZFIN:ZDB-PUB-061010-3"}
property_value: UBPROP:0000008 "Compared to terrestial animals, the cornea of zebrafish is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowman's membrane in mammals" xsd:string

[Term]
id: UBERON:0004456
name: entire sense organ system
namespace: uberon
def: "Sum of all sensory systems in an organism." [http://orcid.org/0000-0002-6601-2165]
subset: uberon_slim
synonym: "sense organ system" EXACT [FMA:78499]
xref: FMA:78499
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0000467 ! anatomical system
property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string

[Term]
id: UBERON:0004505
name: skeletal muscle tissue of orbicularis oculi
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Automatically generated definition]." [OBOL:automatic]
xref: FMA:261812
is_a: UBERON:0003269 ! skeletal muscle tissue of eye
relationship: part_of UBERON:0001578 ! orbicularis oculi muscle

[Term]
id: UBERON:0004508
name: skeletal muscle tissue of levator palpebrae superioris
namespace: uberon
def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]." [OBOL:automatic]
xref: FMA:261782
is_a: UBERON:0003269 ! skeletal muscle tissue of eye
relationship: part_of UBERON:0001604 ! levator palpebrae superioris

[Term]
id: UBERON:0004548
name: left eye
namespace: uberon
def: "An eye that is part of a left side of organism [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "left eyeball" EXACT [FMA:12515]
synonym: "left orbital part of face" NARROW [FMA:54450]
synonym: "left orbital region" NARROW [FMA:54450]
xref: EMAPA:37362 {source="MA:th"}
xref: FMA:12515
xref: MA:0002949
xref: NCIT:C119334
xref: SCTID:362503005
is_a: UBERON:0000970 ! eye
property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI

[Term]
id: UBERON:0004549
name: right eye
namespace: uberon
def: "An eye that is part of a right side of organism [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "right eyeball" EXACT [FMA:12514]
synonym: "right orbital part of face" NARROW [FMA:54449]
synonym: "right orbital region" NARROW [FMA:54449]
xref: EMAPA:37363 {source="MA:th"}
xref: FMA:12514
xref: MA:0002950
xref: NCIT:C119333
xref: SCTID:362502000
is_a: UBERON:0000970 ! eye
property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI

[Term]
id: UBERON:0004637
name: otic capsule
namespace: uberon
def: "The capsule surrounding the inner ear mechanism." [http://www.biology-online.org/dictionary/Otic_capsule]
synonym: "auditory capsule" RELATED [VHOG:0000854]
synonym: "otic capsule" EXACT [ZFA:0001500]
synonym: "otic capsule element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "otic capsule endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "otic capsule skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "otic region" RELATED []
synonym: "periotic" RELATED []
synonym: "periotic capsule" RELATED [VHOG:0000854]
xref: AAO:0010143
xref: SCTID:361515007
xref: VHOG:0000854
relationship: part_of UBERON:0001846 ! internal ear
property_value: IAO:0000116 "developmental relationships need to be checked" xsd:string
property_value: UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010143", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000001 "The cartilage capsule surrounding the inner ear mechanism; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony. [Biology_online][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000854", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010143", ontology="AAO"}
property_value: UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010143", ontology="AAO"}
property_value: UBPROP:0000003 "Otic capsules develop around the parts of the ear that lie within the chondrocranium. This part of the ear, known as the inner ear, is composed of the semicircular ducts and associated sacs that contain the receptive cells for equilibrium and hearing (reference 1); (...) considerations have led to our rethinking issues related to the origin of several aspects of vertebrate hearing, and to the view that many basic auditory functions evolved very early in vertebrate history, and that the functions observed in more `advanced' vertebrates, such as birds and mammals, are frequently modifications of themes first encountered in fishes, and perhaps even more ancestral animals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000854", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.235, DOI:10.1016/S0378-5955(00)00168-4 Fay RR, Popper AN, Evolution of hearing in vertebrates: the inner ears and processing. Hearing research (2000)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)" xsd:string {source="Biology-Online"}

[Term]
id: UBERON:0004650
name: tongue keratinized epithelium
namespace: uberon
def: "A keratinized stratified squamous epithelium that is part of a tongue." [OBOL:automatic]
synonym: "keratinized epithelium of tongue" EXACT [FMA:74865]
xref: FMA:74865
xref: MA:0002787
is_a: UBERON:0006919 ! tongue squamous epithelium
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0004681
name: vestibular system
namespace: uberon
def: "The sensory system for the sense of balance." [NLXANAT:090819]
subset: pheno_slim
synonym: "equilibrioception system" NARROW []
synonym: "vestibular organ system" EXACT [FMA:7193]
synonym: "vestibular system" EXACT [NLXANAT:090819]
synonym: "vestibulomotor system" NARROW []
xref: BTO:0003381
xref: EMAPA:37986 {source="MA:th"}
xref: FMA:7193
xref: NLXANAT:090819
xref: SCTID:361533001
xref: Wikipedia:Vestibular_system
is_a: UBERON:0001032 ! sensory system
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
property_value: UBPROP:0000001 "The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright[Wikipedia:Vestibular_system]." xsd:string {source="Wikipedia:Vestibular_system"}
property_value: UBPROP:0000012 "FMA and NIF have no part information for this class. This is a GAT in FMA" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0004692
name: external naris epithelium
namespace: uberon
def: "An epithelium that is part of an external naris [Automatically generated definition]." [OBOL:automatic]
xref: EMAPA:18596
xref: MA:0001321
is_a: UBERON:0019306 ! nose epithelium
is_a: UBERON:0035036 ! naris epithelium
relationship: part_of UBERON:0005928 ! external naris

[Term]
id: UBERON:0004694
name: Harderian gland epithelium
namespace: uberon
def: "An epithelium that is part of a Harderian gland [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelium of harderian gland" EXACT []
synonym: "harderian gland epithelium" EXACT [MA:0001248]
xref: MA:0001248
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0004187 ! Harderian gland

[Term]
id: UBERON:0004721
name: crista ampullaris
namespace: uberon
def: "The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration." [Wikipedia:Crista_ampullaris]
subset: organ_slim
subset: pheno_slim
synonym: "ampullary crest" RELATED [MA:0002771]
synonym: "ampullary crest of semicircular duct" EXACT [FMA:77714]
synonym: "cristae ampullares" RELATED [Wikipedia:Crista_ampullaris]
xref: EMAPA:32791
xref: FMA:77714
xref: MA:0002771
xref: NCIT:C32063
xref: SCTID:368953000
xref: UMLS:C0229465 {source="ncithesaurus:Ampullary_Crest"}
xref: Wikipedia:Crista_ampullaris
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png xsd:anyURI

[Term]
id: UBERON:0004724
name: medial palpebral ligament
namespace: uberon
def: "The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest." [Wikipedia:Medial_palpebral_ligament]
synonym: "l. palpebrale mediale" RELATED LATIN [Wikipedia:Medial_palpebral_ligament]
xref: EMAPA:37608 {source="MA:th"}
xref: MA:0001258
xref: NCIT:C52724
xref: SCTID:280578002
xref: UMLS:C0229251 {source="ncithesaurus:Medial_Palpebral_Ligament"}
xref: Wikipedia:Medial_palpebral_ligament
relationship: part_of UBERON:0004772 ! eyelid tarsus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png xsd:anyURI

[Term]
id: UBERON:0004727
name: cochlear nerve
namespace: uberon
def: "A nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [Wikipedia:Cochlear_nerve]
subset: pheno_slim
subset: uberon_slim
synonym: "auditory nerve" EXACT [FMA:53431]
synonym: "cochlear component" BROAD []
synonym: "cochlear root of acoustic nerve" EXACT [FMA:53431]
synonym: "cochlear root of eighth cranial nerve" EXACT [FMA:53431]
synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490]
synonym: "vestibulocochlear nerve cochlear component" RELATED [EMAPA:17802]
synonym: "vestibulocochlear VIII nerve cochlear component" EXACT [MA:0001110]
xref: BAMS:cVIIIn
xref: BM:VIIIN
xref: BTO:0003490
xref: EHDAA2:0002195
xref: EMAPA:17802
xref: FMA:53431
xref: GAID:723
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1406
xref: MA:0001110
xref: MBA:948
xref: MESH:D003056
xref: NCIT:C12697
xref: OpenCyc:Mx4rwIhQfZwpEbGdrcN5Y29ycA
xref: SCTID:280286001
xref: UMLS:C0009201 {source="ncithesaurus:Cochlear_Nerve"}
xref: VHOG:0001182
xref: Wikipedia:Cochlear_nerve
relationship: part_of UBERON:0001648 ! vestibulocochlear nerve

[Term]
id: UBERON:0004771
name: posterior nasal aperture
namespace: uberon
def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, Wikipedia:Posterior_nasal_apertures]
subset: pheno_slim
synonym: "choana" BROAD [Wikipedia:Choane, XAO:0000277]
synonym: "choanae" RELATED PLURAL [VHOG:0000545]
synonym: "internal naris" BROAD [MA:0001323]
synonym: "nasopharyngeal naris" RELATED []
synonym: "posterior choana" RELATED [HP:0004496]
synonym: "posterior naris" RELATED [VHOG:0000545]
synonym: "posterior nasal apperture" EXACT [XAO:0000277]
xref: AAO:0000093
xref: EHDAA2:0000242
xref: EHDAA:7842
xref: EMAPA:17849
xref: FMA:53143
xref: MA:0001323
xref: SCTID:244507001
xref: VHOG:0000545
xref: Wikipedia:Posterior_nasal_apertures
xref: XAO:0000277
is_a: UBERON:0010425 ! internal naris
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/87/Gray855.png xsd:anyURI
property_value: UBPROP:0000001 "One of the paired openings from the nasal cavities into the pharynx. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-6, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000545", ontology="VHOG", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000001 "Opening between the nasal cavity and the nasopharynx.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000093", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000003 "The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000545", ontology="VHOG", source="DOI:10.1038/nature02843 Zhu M, Ahlberg PE, The origin of the internal nostril in tetrapodes. Nature (2004)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "Fish don't have choanae, instead they have two pairs of external nostrils" xsd:string {source="WP"}
property_value: UBPROP:0000008 "In addition to tetrapods, the lungfish has internal nostrils too. In tetrapods the exhalant nostril (choana) empties into the buccal cavity." xsd:string

[Term]
id: UBERON:0004772
name: eyelid tarsus
namespace: uberon
def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [Wikipedia:Tarsus_(eyelids)]
subset: organ_slim
synonym: "eyelid tarsi" RELATED PLURAL []
synonym: "tarsal plate" EXACT [FMA:59086]
synonym: "tarsal plate of eyelid" EXACT [FMA:59086]
synonym: "tarsi" RELATED PLURAL []
synonym: "tarsus palpebralis" EXACT [PMID:16496288]
xref: FMA:59086
xref: MA:0000270
xref: NCIT:C33736
xref: SCTID:362529005
xref: UMLS:C0459586 {source="ncithesaurus:Tarsal_Plate"}
xref: Wikipedia:Tarsus_(eyelids)
relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid
relationship: part_of UBERON:0003581 {source="cjm"} ! eyelid connective tissue
property_value: UBPROP:0000008 "In most taxa (birds, mammals, lizards), the tarsal plate is described as a dense, fibrous connective tissue, possibly including cartilage, present within one or both of the upper and lower eyelids (Gau- thier et al., 1988; Rieppel, 2000). In humans, the tarsal plate of the upper eyelid is composed of collagens types I, III, and V, as well as glycosaminogly- cans (chondroitin sulphate 4 and 6), aggrecan, and cartilage oligomeric matrix proteins but lacks collagen type II as well as chondrocytes (Milz et al., 2005). Thus, for humans, the upper tarsal plate represents neither a truly fibrous nor a truly cartilagi- nous element but instead one that is composed of a unique transitional tissue (Milz et al., 2005). In many birds, lizards, and Sphenodon (the tuatara), the upper eyelid has lim- ited mobility and a putative tarsal plate is instead found within the lower eyelid (Underwood, 1970; Gau- thier et al., 1988)." xsd:string {source="PMID:16496288"}

[Term]
id: UBERON:0004773
name: superior eyelid tarsus
namespace: uberon
def: "An eyelid tarsus that is part of a upper eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "superior tarsal plate" EXACT [FMA:59087]
synonym: "superior tarsus" EXACT [FMA:59087]
synonym: "superior tarsus of eyelid" EXACT []
synonym: "tarsal plate of upper eyelid" EXACT [FMA:59087]
synonym: "tarsus of upper eyelid" EXACT []
synonym: "tarsus superior" EXACT LATIN [FMA:59087, FMA:TA]
xref: EMAPA:37607 {source="MA:th"}
xref: FMA:59087
xref: MA:0001260
xref: SCTID:368773004
xref: Wikipedia:Tarsus_(eyelids)
is_a: UBERON:0004772 ! eyelid tarsus
relationship: part_of UBERON:0001712 ! upper eyelid

[Term]
id: UBERON:0004774
name: inferior eyelid tarsus
namespace: uberon
def: "An eyelid tarsus that is part of a lower eyelid [Automatically generated definition]." [OBOL:automatic]
synonym: "inferior tarsal plate" EXACT [FMA:59088]
synonym: "inferior tarsus" EXACT [FMA:59088]
synonym: "inferior tarsus of eyelid" EXACT []
synonym: "tarsal plate of lower eyelid" EXACT [FMA:59088]
synonym: "tarsus inferior" EXACT LATIN [FMA:59088, FMA:TA]
synonym: "tarsus of lower eyelid" EXACT []
xref: EMAPA:37606 {source="MA:th"}
xref: FMA:59088
xref: MA:0001257
xref: SCTID:368774005
is_a: UBERON:0004772 ! eyelid tarsus
relationship: part_of UBERON:0001713 ! lower eyelid

[Term]
id: UBERON:0004817
name: lacrimal gland epithelium
namespace: uberon
def: "An epithelium that is part of a lacrimal gland [Automatically generated definition]." [OBOL:automatic]
synonym: "epithelial tissue of lacrimal gland" EXACT [OBOL:automatic]
synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic]
synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic]
xref: EMAPA:36515
xref: MA:0001297
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001817 ! lacrimal gland

[Term]
id: UBERON:0004859
name: eye gland
namespace: uberon
def: "A gland that is part of a eye. The eye is a compound unit which depending on the species may consist of an eyeballs plus associated ducts and integumentary structures. Eye glands therefore include the various types of lacrimal gland, the various types of apocrine and sebaceous glands associated with the eyelid." [http://orcid.org/0000-0002-6601-2165]
comment: Examples: harderian gland, accessory lacrimal gland, gland of Moll, gland of Zeis, nictitating membrane glands
subset: organ_slim
synonym: "eye-associated gland" EXACT [http://orcid.org/0000-0002-6601-2165]
synonym: "gland of eye" EXACT [OBOL:automatic]
xref: EMAPA:35334
xref: MA:0000267
relationship: part_of UBERON:0000970 ! eye

[Term]
id: UBERON:0004864
name: vasculature of retina
namespace: uberon
def: "A vasculature that is part of a retina [Automatically generated definition]." [OBOL:automatic]
subset: pheno_slim
synonym: "retina vasculature" EXACT [GO:0061298]
synonym: "retina vasculature of camera-type eye" EXACT [GO:0061298]
synonym: "retinal blood vessels" EXACT [FMA:76552]
synonym: "retinal blood vessels set" EXACT [FMA:76552]
synonym: "retinal vasculature" EXACT [OBOL:automatic]
synonym: "set of blood vessels of retina" EXACT [OBOL:automatic]
synonym: "set of retinal blood vessels" EXACT [FMA:76552]
synonym: "vasa sanguinea retinae" EXACT LATIN [FMA:76552, FMA:TA]
xref: FMA:76552
xref: MESH:D012171
xref: XAO:0004153
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0000966 ! retina
property_value: RO:0002161 NCBITaxon:8782 {source="PMID:21622558", source="PMID:2772405", submitter="michaelerice"}

[Term]
id: UBERON:0004868
name: tapetum lucidum of camera-type eye
namespace: uberon
def: "A layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors" [PMID:14738502, Wikipedia:Tapetum_lucidum]
synonym: "tapeta lucida" EXACT PLURAL []
synonym: "tapetum lucidum" EXACT []
xref: Wikipedia:Tapetum_lucidum
is_a: UBERON:0015169 ! tapetum
relationship: part_of UBERON:0010230 ! eyeball of camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/76/TapetumLucidum.JPG xsd:anyURI
property_value: UBPROP:0000001 "The tapetum lucidum is a biologic reflector system that is a common feature in the eyes of vertebrates. Typically absent in diurnal animals. In vertebrates, the tapetum lucidum exhibits diverse structure, organization and composition. The tapetum lucidum represents a remarkable example of neural cell and tissue specialization as an adaptation to a dim light environment and, despite these differences, all tapetal variants act to increase retinal sensitivity by reflecting light back through the photoreceptor layer. These variations regarding both its location and structure, as well as the choice of reflective material, may represent selective visual adaptations associated with their feeding behavior, in response to the use of specific wavelengths and amount of reflectance required.[PMID:14738502]." xsd:string {source="PMID:14738502"}
property_value: UBPROP:0000007 "tapetal" xsd:string
property_value: UBPROP:0000008 "Two morphologic types of tapetum lucidum can be observed in the eyes of fish: one in the choroid that occurs in elasmobranchs, and the other which occurs in teleosts and lies in the pigment epithelium of the retina" xsd:string {source="PMID:14738502"}
property_value: UBPROP:0000009 "It normally functions at low light levels to provide the light-sensitive retinal cells with a second opportunity for photon-photoreceptor stimulation, thereby enhancing visual sensitivity" xsd:string

[Term]
id: UBERON:0004904
name: neuron projection bundle connecting eye with brain
namespace: uberon
def: "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila" [http://orcid.org/0000-0002-6601-2165]
comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
subset: grouping_class
subset: pheno_slim
synonym: "optic nerve" BROAD [BTO:0000966]
synonym: "optic nerve (generic)" EXACT []
xref: BTO:0000966
xref: EV:0100351
xref: FBbt:00001956
xref: TADS:0000232
relationship: part_of UBERON:0002104 ! visual system

[Term]
id: UBERON:0005017
name: mucosa of lacrimal sac
namespace: uberon
def: "A mucosa that is part of a lacrimal sac [Automatically generated definition]." [OBOL:automatic]
synonym: "lacrimal sac mucosa" EXACT [OBOL:automatic]
synonym: "lacrimal sac mucosa of organ" EXACT [OBOL:automatic]
synonym: "lacrimal sac mucous membrane" EXACT [OBOL:automatic]
synonym: "lacrimal sac organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lacrimal sac" EXACT [OBOL:automatic]
synonym: "mucous membrane of lacrimal sac" EXACT [OBOL:automatic]
synonym: "organ mucosa of lacrimal sac" EXACT [OBOL:automatic]
xref: FMA:72061
is_a: UBERON:0005043 ! mucosa of nasolacrimal duct
relationship: part_of UBERON:0001351 ! lacrimal sac

[Term]
id: UBERON:0005018
name: mucosa of nasal septum
namespace: uberon
def: "A mucosa that is part of a nasal septum [Automatically generated definition]." [OBOL:automatic]
synonym: "mucosa of organ of nasal septum" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasal septum" EXACT [OBOL:automatic]
synonym: "nasal septum mucosa" EXACT [OBOL:automatic]
synonym: "nasal septum mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasal septum mucous membrane" EXACT [OBOL:automatic]
synonym: "nasal septum organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic]
xref: EMAPA:36028
xref: FMA:60113
relationship: part_of UBERON:0001706 ! nasal septum

[Term]
id: UBERON:0005020
name: mucosa of tongue
namespace: uberon
def: "A mucosa that is part of a tongue [Automatically generated definition]." [OBOL:automatic]
subset: efo_slim
synonym: "lingual mucosa" EXACT [FMA:54807]
synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic]
synonym: "mucous membrane of tongue" EXACT [OBOL:automatic]
synonym: "organ mucosa of tongue" EXACT [OBOL:automatic]
synonym: "tongue mucosa" EXACT [OBOL:automatic]
synonym: "tongue mucosa of organ" EXACT [OBOL:automatic]
synonym: "tongue mucous membrane" EXACT [OBOL:automatic]
synonym: "tongue organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa linguae" EXACT LATIN [FMA:54807, FMA:TA]
xref: EFO:0002553
xref: FMA:54807
xref: SCTID:362092002
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0005026
name: mucosa of middle ear
namespace: uberon
def: "A mucosa that is part of a middle ear [Automatically generated definition]." [OBOL:automatic]
synonym: "middle ear mucosa" EXACT [OBOL:automatic]
synonym: "middle ear mucosa of organ" EXACT [OBOL:automatic]
synonym: "middle ear mucous membrane" EXACT [OBOL:automatic]
synonym: "middle ear organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of middle ear" EXACT [OBOL:automatic]
synonym: "mucosa of tympanic cavity" EXACT [FMA:59663]
synonym: "mucous membrane of middle ear" EXACT [OBOL:automatic]
synonym: "organ mucosa of middle ear" EXACT [OBOL:automatic]
synonym: "tunica mucosa cavitatis tympanicae" EXACT LATIN [FMA:59663, FMA:TA]
xref: CALOHA:TS-0631
xref: FMA:59663
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0005029
name: mucosa of lacrimal canaliculus
namespace: uberon
def: "A mucosa that is part of a lacrimal canaliculus [Automatically generated definition]." [OBOL:automatic]
synonym: "lacrimal canalicular mucosa" EXACT [FMA:85366]
synonym: "lacrimal canaliculus mucosa" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus mucosa of organ" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus mucous membrane" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lacrimal canaliculus" EXACT [OBOL:automatic]
synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic]
synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic]
xref: FMA:85366
relationship: part_of UBERON:0001770 ! lacrimal canaliculus

[Term]
id: UBERON:0005042
name: inner epithelial layer of tympanic membrane
namespace: uberon
def: "A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [https://orcid.org/0000-0002-6601-2165, PMID:11237469]
synonym: "mucosa of tympanic membrane" EXACT [FMA:56844]
synonym: "mucous layer of tympanic membrane" EXACT [FMA:56844]
synonym: "mucous stratum of tympanic membrane" EXACT [FMA:56844]
synonym: "tympanic membrane external middle ear cavity epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "tympanic membrane mucosa" EXACT [FMA:56844]
xref: FMA:56844
xref: SCTID:36411006
is_a: UBERON:0009647 ! tympanic membrane epithelium
relationship: part_of UBERON:0010063 ! tympanic cavity epithelium
property_value: UBPROP:0000012 "in FMA this is classified as a mucosa" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0005043
name: mucosa of nasolacrimal duct
namespace: uberon
def: "A mucosa that is part of a nasolacrimal duct [Automatically generated definition]." [OBOL:automatic]
synonym: "mucosa of organ of nasolacrimal duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasolacrimal duct" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucosa" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucous membrane" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct organ mucosa" EXACT [OBOL:automatic]
synonym: "nasolacrimal ductal mucosa" EXACT [FMA:59664]
synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic]
xref: FMA:59664
relationship: part_of UBERON:0002392 ! nasolacrimal duct

[Term]
id: UBERON:0005044
name: mucosa of pharyngotympanic tube
namespace: uberon
def: "A mucosa that is part of a pharyngotympanic tube [Automatically generated definition]." [OBOL:automatic]
synonym: "auditory tube mucosa" EXACT [OBOL:automatic]
synonym: "auditory tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "auditory tube mucous membrane" EXACT [OBOL:automatic]
synonym: "auditory tube organ mucosa" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucosa" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucous membrane" EXACT [OBOL:automatic]
synonym: "internal auditory tube organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of auditory tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "mucuous membrane of eustachian tube" EXACT [FMA:60109]
synonym: "mucuous membrane of pharyngotympanic tube" EXACT [FMA:60109]
synonym: "organ mucosa of auditory tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of internal auditory tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucosa" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucous membrane" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (tuba auditiva)" EXACT [FMA:60109]
synonym: "tunica mucosa (tuba auditoria)" EXACT [FMA:60109]
xref: FMA:60109
is_a: UBERON:0005026 ! mucosa of middle ear
relationship: part_of UBERON:0002393 ! pharyngotympanic tube

[Term]
id: UBERON:0005067
name: amphid sensory organ
namespace: uberon
def: "Amphid sensory organs are the sensory organs of nematodes[GO]." [GO:0003386]
subset: organ_slim
synonym: "amphid sensillum" EXACT []
xref: WBbt:0005391
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0005236
name: osseus labyrinth vestibule
namespace: uberon
def: "A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear." [BTO:0003382, Wikipedia:Vestibule_of_the_ear]
subset: pheno_slim
synonym: "bony labyrinth vestibule" EXACT []
synonym: "inner ear vestibule" RELATED [BTO:0003382]
synonym: "inner ear vestibulum" EXACT [BTO:0003382]
synonym: "osseous labyrinth vestibule" EXACT [OBOL:automatic]
synonym: "vestibular apparatus" RELATED [GAID:881]
synonym: "vestibular part of bony labyrinth" RELATED [FMA:60183]
synonym: "vestibule" BROAD [MP:0000034, XAO:0000199]
synonym: "vestibule of bony labyrinth" EXACT [FMA:60183]
synonym: "vestibulum auris" RELATED LATIN [Wikipedia:Vestibule_of_the_ear]
synonym: "vestibulum labyrinthi" RELATED LATIN [Wikipedia:Vestibule_of_the_ear]
xref: BTO:0003382
xref: CALOHA:TS-0479
xref: EV:0100366
xref: FMA:60183
xref: GAID:881
xref: MA:0001185
xref: MESH:D014722
xref: NCIT:C33873
xref: SCTID:181188003
xref: UMLS:C0458718 {source="ncithesaurus:Vestibule"}
xref: VHOG:0001220
xref: Wikipedia:Vestibule_of_the_ear
xref: XAO:0000199
relationship: part_of UBERON:0001839 ! bony labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray919.png xsd:anyURI
property_value: UBPROP:0000001 "The vestibule is the central part of the osseous labyrinth, and is situated medial to the tympanic cavity, behind the cochlea, and in front of the semicircular canals. [Wikipedia:Vestibule_of_the_ear][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001220", ontology="VHOG", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0005336
name: capillary layer of choroid
namespace: uberon
def: "The capillary lamina of choroid or choriocapillaris is a layer of capillaries that is immediately adjacent to Bruch's membrane in the choroid." [Wikipedia:Capillary_lamina_of_choroid]
synonym: "capillary lamina of choroid" EXACT [FMA:58437]
synonym: "capillary lamina of choroid or choriocapillaris" RELATED []
synonym: "capillary layer of choroid" EXACT [FMA:58437]
synonym: "choriocapillaris" RELATED [Wikipedia:Capillary_lamina_of_choroid]
synonym: "inner layer of choroid proper" EXACT [FMA:58437]
synonym: "lamina choriocapillaris" RELATED []
synonym: "lamina choroidocapillaris" RELATED LATIN [Wikipedia:Capillary_lamina_of_choroid]
xref: FMA:58437
xref: SCTID:280899009
xref: Wikipedia:Capillary_lamina_of_choroid
relationship: part_of UBERON:0013399 ! blood vessel layer of choroid

[Term]
id: UBERON:0005342
name: malleus head
namespace: uberon
def: "rounded portion of the malleus that articulates with the body of the incus[MP]." [MP:0008379]
subset: pheno_slim
synonym: "head of malleus" EXACT [FMA:52761]
xref: FMA:52761
xref: MA:0002987
xref: SCTID:368926004
relationship: part_of UBERON:0001689 ! malleus bone

[Term]
id: UBERON:0005354
name: malleus processus brevis
namespace: uberon
def: "The projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324]
subset: pheno_slim
relationship: part_of UBERON:0001689 ! malleus bone

[Term]
id: UBERON:0005355
name: malleus neck
namespace: uberon
def: "The narrow contracted section of the malleus located between the head and the manubrium[MP]." [MP:0010327, Wikipedia:Neck_of_malleus]
subset: pheno_slim
synonym: "collum mallei" RELATED LATIN [Wikipedia:Neck_of_malleus]
synonym: "neck of malleus" EXACT [FMA:52762]
xref: FMA:52762
xref: MA:0002988
xref: SCTID:368927008
xref: Wikipedia:Neck_of_malleus
relationship: part_of UBERON:0001689 ! malleus bone
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png xsd:anyURI

[Term]
id: UBERON:0005384
name: nasal cavity epithelium
namespace: uberon
def: "An epithelium that lines the nasal cavity." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
synonym: "nasal epithelium" EXACT [FMA:63140]
synonym: "nasal mucosa" RELATED [MA:0001324]
xref: CALOHA:TS-0656
xref: EHDAA2:0001227
xref: EHDAA:6803
xref: EMAPA:17605
xref: FMA:63140
xref: MA:0001324
xref: NCIT:C49261
xref: UMLS:C1709151 {source="ncithesaurus:Nasal_Cavity_Epithelium"}
xref: VHOG:0000501
is_a: UBERON:0019306 ! nose epithelium
relationship: part_of UBERON:0001826 ! nasal cavity mucosa
property_value: IAO:0000116 "this class may in future be split into the embryonic precursor of the oronasal membrane and the structure that is part of the mucosa in the developed organism" xsd:string

[Term]
id: UBERON:0005385
name: nasal cavity respiratory epithelium
namespace: uberon
def: "An epithelium that is part of the respiratory segment of the nasal mucosa [Automatically generated definition]." [https://github.com/obophenotype/uberon/issues/50, OBOL:automatic]
xref: EHDAA2:0001230
xref: EHDAA:6807
xref: EMAPA:17607
xref: MA:0001326
xref: NCIT:C49262
xref: UMLS:C1709152 {source="ncithesaurus:Nasal_Cavity_Respiratory_Epithelium"}
is_a: UBERON:0005384 ! nasal cavity epithelium
relationship: part_of UBERON:0015786 ! respiratory segment of nasal mucosa
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall

[Term]
id: UBERON:0005386
name: olfactory segment of nasal mucosa
namespace: uberon
def: "That portion of the nasal mucosa containing the sensory endings for olfaction; the organ of smell[MESH]." [MESH:A04.531.520.573, Wikipedia:Olfactory_mucosa]
subset: pheno_slim
synonym: "olfactory area of nasal mucosa" EXACT [FMA:77199]
synonym: "olfactory mucosa" EXACT []
synonym: "olfactory part of nasal mucosa" EXACT [FMA:77199]
synonym: "olfactory zone of nasal mucosa" EXACT [FMA:77199]
synonym: "pars olfactoria tunicae mucosae nasi" EXACT LATIN [FMA:77199, FMA:TA]
synonym: "pars olfactoria tunicae mucosae nasi" RELATED LATIN [Wikipedia:Olfactory_mucosa]
xref: CALOHA:TS-2197
xref: EMAPA:37918 {source="MA:th"}
xref: FMA:77199
xref: GAID:303
xref: MESH:D009831
xref: NCIT:C33205
xref: UMLS:C0028937 {source="ncithesaurus:Olfactory_Mucosa"}
xref: Wikipedia:Olfactory_mucosa
is_a: UBERON:0001826 ! nasal cavity mucosa
relationship: part_of UBERON:0005725 ! olfactory system
property_value: UBPROP:0000001 "The olfactory mucosa is located in the upper region of the nasal cavity and is made up of the olfactory epithelium and the underlying lamina propria, connective tissue containing fibroblasts, blood vessels, Bowman's glands and bundles of fine axons from the olfactory neurons. The mucus protects the olfactory epithelium and allows odors to dissolve so that they can be detected by olfactory receptor neurons. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP][Wikipedia:Olfactory_mucosa]." xsd:string {source="Wikipedia:Olfactory_mucosa"}

[Term]
id: UBERON:0005388
name: photoreceptor array
namespace: uberon
def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165]
synonym: "light-sensitive tissue" EXACT []
xref: FBbt:00004200
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000970 ! eye

[Term]
id: UBERON:0005389
name: transparent eye structure
namespace: uberon
def: "A transparent structure that is part of a visual sense organ, the function of which is to direct or focus light onto a photoreceptor array." [http://orcid.org/0000-0002-6601-2165]
subset: grouping_class
synonym: "lens" NARROW []
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000970 ! eye
property_value: UBPROP:0000009 "directing or focusing light onto light receptors" xsd:string

[Term]
id: UBERON:0005410
name: cartilaginous otic capsule
namespace: uberon
alt_id: UBERON:0010351
def: "A otic capsule endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic]
subset: vertebrate_core
synonym: "auditory capsule" EXACT [ZFA:0001500]
synonym: "otic capsule cartilage element" EXACT []
xref: EHDAA2:0001333
xref: EHDAA:4704
xref: EMAPA:17596
xref: EMAPA:18803
xref: EMAPA:37467 {source="MA:th"}
xref: TAO:0001500
xref: ZFA:0001500
is_a: UBERON:0004637 ! otic capsule
property_value: UBPROP:0000001 "Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO"}
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO"}
property_value: UBPROP:0000008 "In elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans). todo - check EMAPA" xsd:string

[Term]
id: UBERON:0005411
name: bony otic capsule
namespace: uberon
def: "the cartilage or bony capsule surrounding the inner ear mechanism" [ISBN:0-683-40008-8, MP:0000039]
subset: pheno_slim
synonym: "otic capsule bone" EXACT []
xref: EMAPA:17596
xref: EMAPA:37466 {source="MA:th"}
xref: MA:0000252
is_a: UBERON:0004637 ! otic capsule
property_value: UBPROP:0000008 "In elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)" xsd:string

[Term]
id: UBERON:0005427
name: corneal primordium
namespace: uberon
def: "Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3]
xref: TAO:0002188
xref: ZFA:0001688
relationship: part_of UBERON:0000019 {source="ZFA"} ! camera-type eye

[Term]
id: UBERON:0005492
name: hyaloid vessel
namespace: uberon
def: "A blood vessel that is associated with the lens. In mammals, this is transient and normally nourishes the retina, immature lens and primary vitreous of the developing eye." [MP:0001289, ZFA:0005046]
subset: vertebrate_core
synonym: "hyaloid blood vessels" EXACT PLURAL [XAO:0004154]
synonym: "hyaloid capillary system" RELATED [MP:0001289]
synonym: "hyaloid vascular system" RELATED [MP:0001289]
synonym: "hyaloid vasculature" RELATED [ZFA:0005046]
synonym: "hyaloid vessels" EXACT PLURAL [TAO:0005046]
xref: EHDAA:4735
xref: TAO:0005046
xref: VHOG:0000232
xref: XAO:0004154
xref: ZFA:0005046
relationship: part_of UBERON:0002203 {source="ZFA-modified"} ! vasculature of eye
property_value: IAO:0000116 "we are currently conflating vessel and vasculature - we may wish to split this class - see also vascular plexus term. The ZFA class represents the vasculature" xsd:string

[Term]
id: UBERON:0005600
name: crus commune
namespace: uberon
def: "A region formed by non-ampulated ends of posterior and superior semicircular canals of vestibular apparatus in inner ear." [http://emedicine.medscape.com/article/883956-overview]
subset: pheno_slim
synonym: "crus commune" RELATED [MA:0001210]
synonym: "crus commune canalis semicircularis" EXACT []
xref: EHDAA2:0000330
xref: EHDAA:7783
xref: EMAPA:17818
xref: MA:0001210
xref: SCTID:279758009
xref: VHOG:0001344
relationship: part_of UBERON:0001856 ! semicircular duct

[Term]
id: UBERON:0005606
name: hyaloid cavity
namespace: uberon
xref: EHDAA2:0000789
xref: EHDAA:4733
xref: EMAPA:17302
xref: FMA:312291
xref: MA:0000272
xref: VHOG:0001477
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0002203 ! vasculature of eye
property_value: UBPROP:0000001 "A depression in the front of the vitreous body, lodging the lens. [adapted_from_the_definition_of_the_hyaloid_fossa]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001477", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/hyaloid+fossa"}

[Term]
id: UBERON:0005611
name: inner canthus
namespace: uberon
def: "A corner of the medial (inner) part of an eye." [http://orcid.org/0000-0002-6601-2165]
synonym: "inner canthi" RELATED PLURAL []
synonym: "medial canthus" RELATED [MA:0001262]
synonym: "medial canthus of eye" RELATED []
synonym: "medial palpebral commissure" EXACT [FMA:59316]
synonym: "nasal canthus" RELATED []
xref: EHDAA2:0000829
xref: EMAPA:17830
xref: FMA:59316
xref: MA:0001262
xref: NCIT:C49564
xref: SCTID:362526003
xref: UMLS:C1708516 {source="ncithesaurus:Inner_Canthus"}
xref: VHOG:0000829
is_a: UBERON:0006742 ! canthus
property_value: UBPROP:0000001 "The angle at the end of the palpebral fissure, the slit between the eyelids, close to the nose. [ISBN:0124020607, p.263][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000829", ontology="VHOG", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0005614
name: lens anterior epithelium
namespace: uberon
def: "A layer of cuboidal epithelial cells bounded anteriorly by the capsule of the lens and posteriorly by the lens cortex." [http://orcid.org/0000-0002-6601-2165]
synonym: "anterior epithelium of lens vesicle" RELATED [EMAPA:17304]
synonym: "anterior surface of lens" RELATED [FMA:58889]
synonym: "lens epithelium" BROAD []
synonym: "lens subcapsular epithelium" EXACT [http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm]
synonym: "subcapsular lens epithelium" EXACT [FMA:70612]
xref: EHDAA2:0000984
xref: EHDAA:9059
xref: EMAPA:17304
xref: EMAPA:17839
xref: FMA:70612
xref: MA:0001302
xref: NCIT:C33641
xref: RETIRED_EHDAA2:0000976
xref: SCTID:362521008
xref: UMLS:C1182652 {source="ncithesaurus:Subcapsular_Epithelium_of_the_Lens"}
xref: VHOG:0001425
is_a: UBERON:0001803 ! epithelium of lens
relationship: part_of UBERON:0000965 ! lens of camera-type eye
property_value: UBPROP:0000010 "Cells of the subcapsular epithelium (or anterior lens cells) are mitotically active. In adult individuals they only cover the anterior 'hemisphere' of the lens. As they divide, cells gradually move towards the equator of the lens where they tranform into lens fibres. The apical part of the gradually elongating cell extends between the subcapsular epithelium and adjacent lens fibres towards the anterior pole of the lens. The basal part extends towards the posterior pole. The nucleus remains close to the equatorial plane of the lens - http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm" xsd:string

[Term]
id: UBERON:0005615
name: lens equatorial epithelium
namespace: uberon
xref: EHDAA:9063
xref: EMAPA:17840
xref: MA:0001303
xref: RETIRED_EHDAA2:0000978
xref: VHOG:0001459
is_a: UBERON:0001803 ! epithelium of lens

[Term]
id: UBERON:0005625
name: tubotympanic recess lumen
namespace: uberon
def: "The cavity formed by the tubotympanic recess epithelium." [https://orcid.org/0000-0002-6601-2165]
synonym: "cavity of tubotympanic recess" EXACT []
synonym: "tubotympanic recess" RELATED [EHDAA2:0002095]
synonym: "tubotympanic recess cavity" EXACT []
synonym: "tubotympanic recess space" EXACT []
xref: EHDAA2:0002095
xref: FMA:312393
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
relationship: part_of UBERON:0010020 ! tubotympanic recess epithelium

[Term]
id: UBERON:0005638
name: anterior chamber epithelium
namespace: uberon
def: "An epithelium that is part of a anterior chamber of eyeball." [OBOL:automatic]
xref: EHDAA2:0000130
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001766 ! anterior chamber of eyeball

[Term]
id: UBERON:0005657
name: crus commune epithelium
namespace: uberon
def: "An epithelium that is part of a crus commune." [OBOL:automatic]
xref: EMAPA:17820
xref: RETIRED_EHDAA2:0000332
xref: VHOG:0000478
is_a: UBERON:0006932 ! vestibular epithelium
relationship: part_of UBERON:0005600 ! crus commune

[Term]
id: UBERON:0005725
name: olfactory system
namespace: uberon
def: "A sensory system that is capable of olfacttion (the sensory perception of smell)." [http://orcid.org/0000-0002-6601-2165]
subset: efo_slim
subset: pheno_slim
subset: vertebrate_core
xref: AAO:0000334
xref: AAO:0000978
xref: BILA:0000144
xref: EFO:0001973
xref: EMAPA:36004
xref: FMA:7190
xref: MA:0002445
xref: NCIT:C94501
xref: NLXANAT:090806
xref: OpenCyc:Mx4rvViw75wpEbGdrcN5Y29ycA
xref: SCTID:362290002
xref: TAO:0001149
xref: UMLS:C0228065 {source="ncithesaurus:Olfactory_System"}
xref: Wikipedia:Olfactory_system
xref: XAO:0003196
xref: ZFA:0001149
is_a: UBERON:0005726 ! chemosensory system
property_value: IAO:0000116 "consider splitting into main and accessory. See also: vomeronasal organ" xsd:string
property_value: IAO:0000116 "we make the relationship to nervous system 'overlaps', as the olfactory system includes e.g. apertures in the cranium that are not part of the nervous system" xsd:string
property_value: UBPROP:0000001 "The olfactory system is the sensory system used for olfaction, or the sense of smell. Most mammals and reptiles have two distinct parts to their olfactory system: a main olfactory system and an accessory olfactory system. The main olfactory system detects volatile, airborne substances, while the accessory olfactory system senses fluid-phase stimuli. Behavioral evidence indicates that most often, the stimuli detected by the accessory olfactory system are pheromones. The olfactory system is often spoken of along with the gustatory system as the chemosensory senses because both transduce chemical signals into perception[WP][Wikipedia:Olfactory_system]." xsd:string {source="Wikipedia:Olfactory_system"}
property_value: UBPROP:0000001 "The sensory system used for olfaction (the sense of smell).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000978", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000008 "In mammals, the main olfactory system detects odorants that are inhaled through the nose, where they contact the main olfactory epithelium, which contains various olfactory receptors. These olfactory receptors are membrane proteins of bipolar olfactory receptor neurons in the olfactory epithelium. Rather than binding specific ligands like most receptors, olfactory receptors display affinity for a range of odor molecules. Olfactory neurons transduce receptor activation into electrical signals in neurons. The signals travel along the olfactory nerve, which belongs to the peripheral nervous system. This nerve terminates in the olfactory bulb, which belongs to the central nervous system. The complex set of olfactory receptors on different olfactory neurons can distinguish a new odor from the background environmental odors and determine the concentration of the odor[WP]." xsd:string

[Term]
id: UBERON:0005726
name: chemosensory system
namespace: uberon
subset: functional_classification
xref: BILA:0000139
is_a: UBERON:0001032 ! sensory system

[Term]
id: UBERON:0005870
name: olfactory pit
namespace: uberon
def: "An indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, Wikipedia:Nasal_pit]
subset: efo_slim
subset: pheno_slim
synonym: "nasal pit" EXACT [XAO:0000275]
xref: AAO:0011068
xref: EFO:0003496
xref: EHDAA2:0001295
xref: EHDAA:4772
xref: EMAPA:16800
xref: FMA:295840
xref: SCTID:361485001
xref: Wikipedia:Nasal_pit
xref: XAO:0000275
xref: XAO:0004073
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose
property_value: IAO:0000116 "we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode" xsd:string
property_value: UBPROP:0000001 "By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the nasal pits or olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[Wikipedia:Nasal_pit]." xsd:string {source="Wikipedia:Nasal_pit"}

[Term]
id: UBERON:0005908
name: conjunctival sac
namespace: uberon
def: "A serous sac which is the aggregate of the conjunctiva plus the conjunctival space" [https://github.com/obophenotype/uberon/wiki/Serous-Membranes-Design-Pattern]
synonym: "conjunctiva serous sac" EXACT []
synonym: "subbrillar sac" NARROW [NCBITaxon:8570]
xref: EMAPA:18233
xref: FMA:20291
xref: SCTID:362531001
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye

[Term]
id: UBERON:0005928
name: external naris
namespace: uberon
def: "A naris that provides one of the small external openings of the head that give passage to air for breathing." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Nostril]
subset: pheno_slim
subset: vertebrate_core
synonym: "anterior nares" RELATED PLURAL [VHOG:0000544]
synonym: "anterior naris" RELATED [ZFA:0001427]
synonym: "blowhole" NARROW [Wikipedia:Blowhole_(anatomy)]
synonym: "external nares" EXACT PLURAL []
synonym: "naris" BROAD [ZFA:0000550]
synonym: "nostril" EXACT [FMA:59645, XAO:0003033]
xref: AAO:0000024
xref: AAO:0000983
xref: AAO:0010358
xref: EHDAA2:0001275
xref: EHDAA:9085
xref: EMAPA:17848
xref: FMA:59645
xref: MA:0001320
xref: NCIT:C33178
xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA
xref: SCTID:276165005
xref: TAO:0000550
xref: UMLS:C0595944 {source="ncithesaurus:Nostril"}
xref: VHOG:0000544
xref: Wikipedia:Nostril
xref: XAO:0003033
xref: ZFA:0000550
is_a: UBERON:0000003 ! naris
relationship: part_of UBERON:0000004 ! nose
property_value: UBPROP:0000001 "Hole on the nasal capsule that connects the nasal cavity with the exterior.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000024", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000002 "relationship loss: subclass nasal opening (AAO:0000316)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000024", ontology="AAO"}
property_value: UBPROP:0000003 "In a tetrapod, the nasal sac has an external naris (homologous with the anterior naris of the fish) (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000544", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.257 and Figure 7.27", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000008 "Fish have two pairs of external nostrils." xsd:string

[Term]
id: UBERON:0005931
name: primary choana
namespace: uberon
def: "initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate." [http://www.drugs.com/dict/primary-choana.html]
xref: EHDAA:9087
xref: EMAPA:17851
xref: FMA:295944
xref: MA:0001322
is_a: UBERON:0000003 ! naris
relationship: part_of UBERON:0005928 ! external naris
property_value: IAO:0000116 "TODO - check. MA says part_of external naris." xsd:string

[Term]
id: UBERON:0005969
name: eye trabecular meshwork
namespace: uberon
alt_id: UBERON:0004028
def: "A pore-like structure surrounding the entire circumference of the anterior chamber of the eye through which aqueous humor circulates[MP]." [MP:0005203, Wikipedia:Trabecular_meshwork]
subset: efo_slim
subset: pheno_slim
synonym: "cribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "eye trabecular meshwork" EXACT [MA:0003086]
synonym: "Hueck's ligament" RELATED [BTO:0001605]
synonym: "iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum peactin-tum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum anguli iridocornealis" RELATED [BTO:0001605]
synonym: "ligamentum pectinatum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "pectinate ligament" RELATED [BTO:0001605]
synonym: "pectinate ligament of iris" RELATED [BTO:0001605]
synonym: "reticulum trabeculare" EXACT [BTO:0001605]
synonym: "reticulum trabeculare sclerae" RELATED LATIN [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabeculae" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecular" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecule" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular mesh" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular meshwork" RELATED [BTO:0001605, GO:0002930]
synonym: "trabecular meshwork of the eye" EXACT [Wikipedia:Trabecular_meshwork]
xref: BTO:0001605
xref: CALOHA:TS-1058
xref: EFO:0003077
xref: EV:0100352
xref: FMA:77660
xref: GAID:897
xref: MA:0003086
xref: MESH:D014129
xref: NCIT:C12803
xref: SCTID:280694002
xref: UMLS:C0040573 {source="ncithesaurus:Trabecular_Meshwork"}
xref: Wikipedia:Trabecular_meshwork
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0003956 ! aqueous drainage system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png xsd:anyURI
property_value: IAO:0000116 "TODO check syns - ligaments" xsd:string

[Term]
id: UBERON:0005972
name: tunnel of Corti
namespace: uberon
def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151]
subset: pheno_slim
xref: EMAPA:37976 {source="MA:th"}
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0002227 ! spiral organ of cochlea

[Term]
id: UBERON:0005973
name: blood-inner ear barrier
namespace: uberon
def: "The function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier" [MP:0004999]
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0006010
name: hyaloid canal
namespace: uberon
def: "A small transparent canal running through the vitreous body from the optical nerve disc to the lens. It is formed by an invagination of the hyaloid, a membrane which encloses the vitreous body[WP]." [Wikipedia:Hyaloid_canal]
synonym: "canal of Cloquet" EXACT [FMA:58837]
synonym: "canalis hyaloideus" EXACT LATIN [Wikipedia:Hyaloid_canal]
synonym: "Cloquet's canal" EXACT [FMA:58837, Wikipedia:Hyaloid_canal]
synonym: "Stilling's canal" EXACT [FMA:58837, Wikipedia:Hyaloid_canal]
xref: FMA:58837
xref: SCTID:362506002
xref: Wikipedia:Hyaloid_canal
relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png xsd:anyURI

[Term]
id: UBERON:0006011
name: hyaloid vein
namespace: uberon
synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047]
xref: EHDAA2:0000791
xref: TAO:0005047
xref: XAO:0004156
xref: ZFA:0005047
is_a: UBERON:0005492 ! hyaloid vessel
property_value: UBPROP:0000001 "Vein internal to the eye. Isogai et al. 2001.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005047", ontology="TAO", source="ZFIN:curator"}

[Term]
id: UBERON:0006106
name: cochlear canal
namespace: uberon
synonym: "cochlear canal" EXACT [BIRNLEX:2553]
synonym: "spiral canal of cochlea" EXACT [BIRNLEX:2553]
synonym: "spiral vessel" RELATED [MA:0003176]
synonym: "wall of cochlea" EXACT [FMA:75371]
xref: BIRNLEX:2553
xref: EMAPA:35801
xref: FMA:75371
xref: MA:0003176
xref: SCTID:279779009
xref: UMLS:C0009198 {source="BIRNLEX:2553"}
xref: UMLS:C0458767 {source="BIRNLEX:2553"}
relationship: part_of UBERON:0001844 ! cochlea

[Term]
id: UBERON:0006203
name: conchal part of pinna
namespace: uberon
subset: pheno_slim
synonym: "concha" BROAD [FMA:61006]
synonym: "concha auriculae" EXACT LATIN [FMA:61006, FMA:TA]
synonym: "concha of auricle" EXACT [FMA:61006]
synonym: "concha of pinna" EXACT [FMA:61006]
xref: FMA:61006
xref: NCIT:C32362
xref: UMLS:C0229316 {source="ncithesaurus:Concha"}
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0006206
name: iridocorneal angle
namespace: uberon
def: "Acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]." [MP:0004221]
subset: pheno_slim
synonym: "anterior chamber angle" EXACT [FMA:58577]
xref: FMA:58577
xref: SCTID:244498000
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0003956 ! aqueous drainage system

[Term]
id: UBERON:0006208
name: auditory hillocks
namespace: uberon
def: "A collection of protruberances derived from pharyngeal arches 1 and 2 that develop into the folds of the pinna and gradually shift upwards and backwards to their final position on the head." [Wikipedia:Pinna_(anatomy)#Development]
subset: emapa_ehdaa2
synonym: "auditory hillock of Hiss" EXACT []
synonym: "auditory tubercles" RELATED INCONSISTENT [VHOG:0001364]
synonym: "auricular hillock" RELATED []
synonym: "hillock of Hiss" RELATED []
xref: EHDAA2:0000155
xref: EHDAA:4685
xref: EMAPA:17280
xref: NCIT:C34110
xref: VHOG:0001364
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0006230
name: extrinsic ocular pre-muscle mass
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA2:0000483
xref: EHDAA:2925
xref: EMAPA:17845
is_a: UBERON:0003314 ! eye mesenchyme
relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye

[Term]
id: UBERON:0006248
name: incus pre-cartilage condensation
namespace: uberon
def: "A incus endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic]
subset: emapa_ehdaa2
xref: EHDAA2:0000813
xref: EHDAA:9024
xref: EMAPA:17825
xref: VHOG:0000957
is_a: UBERON:0015017 ! incus endochondral element
is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element
property_value: IAO:0000116 "in EHDAA2 this develops from both mandibular and maxillary mesenchyme. We have still to extend homology relationships from quadrate/incus to their ontogenic precursors (" xsd:string

[Term]
id: UBERON:0006253
name: embryonic intraretinal space
namespace: uberon
def: "The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina" [VHOG:0000534]
subset: emapa_ehdaa2
synonym: "intraretinal space" EXACT [EHDAA2:0000889]
synonym: "intraretinal space of optic cup" EXACT [EMAPA:16676]
synonym: "intraretinal space of retina" EXACT [EMAPA:17170]
synonym: "retina intraretinal space" EXACT [VHOG:0000534]
xref: EHDAA2:0000889
xref: EHDAA:4761
xref: EMAPA:16676
xref: EMAPA:17170
xref: VHOG:0000534
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000966 ! retina
property_value: UBPROP:0000001 "The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000534", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/intraretinal+space"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000534", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0006259
name: lens pit
namespace: uberon
def: "A pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]." [http://medical-dictionary.thefreedictionary.com/lens+pit]
subset: emapa_ehdaa2
xref: EHDAA2:0000981
xref: EHDAA:3809
xref: EMAPA:16799
xref: NCIT:C34201
xref: UMLS:C1517769 {source="ncithesaurus:Lens_Pit"}
xref: VHOG:0000806
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000965 ! lens of camera-type eye
property_value: UBPROP:0000001 "A pitlike depression in the ectoderm of the lens placode where the primordial lens is developing. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000806", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lens+pit"}

[Term]
id: UBERON:0006262
name: malleus pre-cartilage condensation
namespace: uberon
def: "A malleus endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic]
subset: emapa_ehdaa2
xref: EHDAA2:0001055
xref: EHDAA:9026
xref: EMAPA:17826
xref: VHOG:0000958
is_a: UBERON:0015018 ! malleus endochondral element
is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element

[Term]
id: UBERON:0006266
name: nasolacrimal groove
namespace: uberon
def: "Groove between maxillary prominence and lateral nasal process." [http://www.indiana.edu/~anat550/hnanim/face/face.html, Wikipedia:Lacrimal_groove]
comment: On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct[WP] See also: oblique facial cleft
subset: emapa_ehdaa2
synonym: "naso-lacrimal groove" EXACT [EMAPA:16679]
synonym: "s. lacrimalis maxillae" RELATED LATIN [Wikipedia:Lacrimal_groove]
xref: EHDAA2:0001238
xref: EHDAA:4770
xref: EMAPA:16679
xref: FMA:300055
xref: NCIT:C34218
xref: UMLS:C1513875 {source="ncithesaurus:Nasolacrimal_Groove"}
xref: VHOG:0001307
xref: Wikipedia:Lacrimal_groove
is_a: UBERON:0019306 ! nose epithelium
relationship: part_of UBERON:0000004 {source="EHDAA2"} ! nose
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png xsd:anyURI

[Term]
id: UBERON:0006273
name: otic pit
namespace: uberon
alt_id: UBERON:0009123
def: "the pair of depressions of thickened otic placode epithelium, that further develops into the otic vesicles" [ISBN:0-683-40008-8, MP:0011172]
subset: emapa_ehdaa2
subset: pheno_slim
synonym: "otic cup" EXACT [NCBIBook:NBK53175]
xref: EHDAA2:0001336
xref: EHDAA:929
xref: EMAPA:16536
xref: FMA:302911
xref: NCIT:C34238
xref: VHOG:0001147
xref: Wikipedia:Otic_pit
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0003069 ! otic placode
property_value: UBPROP:0000001 "A depression appearing in each otic placode, marking the beginnning of embryonic development of the internal ear. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001147", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Otic+pit"}

[Term]
id: UBERON:0006276
name: perioptic mesenchyme
namespace: uberon
subset: emapa_ehdaa2
xref: EHDAA:4751
xref: EMAPA:17167
xref: RETIRED_EHDAA2:0001444
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0006294
name: stapes pre-cartilage condensation
namespace: uberon
def: "A stapes endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic]
subset: emapa_ehdaa2
synonym: "stapedial anlage" EXACT [DOI:10.1111/j.1469-7580.2005.00441.x]
xref: EHDAA2:0001910
xref: EHDAA:5699
xref: EMAPA:17827
xref: VHOG:0000956
is_a: UBERON:0015016 ! stapes endochondral element
is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element
relationship: part_of UBERON:0001686 {source="EHDAA2"} ! auditory ossicle bone
property_value: UBPROP:0000011 "independent of the mesenchymal condensation that will form the otic capsule" xsd:string

[Term]
id: UBERON:0006311
name: chamber of eyeball
namespace: uberon
def: "A segment of the eyeball that is filled with refractive media" [http://orcid.org/0000-0002-6601-2165]
synonym: "chamber of eye" RELATED [BTO:0002085]
synonym: "eye chamber" EXACT [MA:0002459]
synonym: "eyeball chamber" EXACT [FMA:58071]
xref: BTO:0002085
xref: EMAPA:37529 {source="MA:th"}
xref: FMA:58071
xref: MA:0002459
xref: NCIT:C32301
xref: SCTID:280540004
xref: UMLS:C0459556 {source="ncithesaurus:Chamber_of_the_Eye"}
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0006312
name: ocular refractive media
namespace: uberon
def: "Body substance in a liquid or semi-solid state in the eyeball which serves to refract light." [http://orcid.org/0000-0002-6601-2165]
xref: MA:0001911
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: UBPROP:0000009 "ocular refraction" xsd:string

[Term]
id: UBERON:0006318
name: orbitalis muscle
namespace: uberon
def: "An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion." [Wikipedia:Orbitalis_muscle]
synonym: "musculus orbitalis" EXACT LATIN [FMA:49034, FMA:TA]
synonym: "musculus orbitalis" RELATED LATIN [Wikipedia:Orbitalis_muscle]
synonym: "orbital muscle" EXACT [FMA:49034]
synonym: "orbital muscle of muller" EXACT [FMA:49034]
synonym: "orbitalis" EXACT [FMA:49034]
synonym: "orbitalis" RELATED [Wikipedia:Orbitalis_muscle]
xref: EMAPA:37691 {source="MA:th"}
xref: FMA:49034
xref: MA:0001274
xref: NCIT:C52800
xref: SCTID:368790005
xref: UMLS:C0229105 {source="ncithesaurus:Orbitalis_Muscle"}
xref: Wikipedia:Orbitalis_muscle
is_a: UBERON:0004277 ! eye muscle
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
property_value: UBPROP:0000012 "subclass of 'muscle layer' in FMA" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0006320
name: inferior oblique extraocular muscle
namespace: uberon
def: "thin, narrow muscle placed near the anterior margin of the floor of the orbit." [Wikipedia:Inferior_oblique_muscle]
comment: Taxon notes (via VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331
subset: vertebrate_core
synonym: "inferior oblique" EXACT [FMA:49040]
synonym: "inferior oblique muscle" EXACT []
synonym: "m. obliquus inferior" EXACT []
synonym: "musculus obliquus inferior" EXACT [AAO:0010117]
synonym: "musculus obliquus inferior bulbi" EXACT [Wikipedia:Inferior_oblique_muscle]
synonym: "musculus obliquus inferior bulbi" RELATED LATIN [Wikipedia:Inferior_oblique_muscle]
synonym: "obliquus inferior" EXACT [FMA:49040]
synonym: "obliquus oculi inferior" EXACT [Wikipedia:Inferior_oblique_muscle]
synonym: "ventral oblique extraocular muscle" EXACT [VHOG:0001132]
synonym: "ventral oblique extraocular muscles" RELATED [VHOG:0001132]
xref: AAO:0010117
xref: FMA:49040
xref: MA:0001276
xref: NCIT:C32783
xref: SCTID:181156006
xref: TAO:0000861
xref: UMLS:C0582817 {source="ncithesaurus:Inferior_Oblique_Muscle"}
xref: VHOG:0001132
xref: Wikipedia:Inferior_oblique_muscle
xref: ZFA:0000861
is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI
property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001132", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0006321
name: superior oblique extraocular muscle
namespace: uberon
def: "The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve)." [Wikipedia:Superior_oblique_muscle]
subset: vertebrate_core
synonym: "dorsal oblique extraocular muscle" EXACT [VHOG:0001131]
synonym: "dorsal oblique extraocular muscles" RELATED [VHOG:0001131]
synonym: "M. obliquus superior" RELATED [Wikipedia:Superior_oblique_muscle]
synonym: "musculus obliquus superior" EXACT [AAO:0010119]
synonym: "musculus obliquus superior bulbi" RELATED LATIN [Wikipedia:Superior_oblique_muscle]
synonym: "obliquus oculi superior" RELATED [Wikipedia:Superior_oblique_muscle]
synonym: "obliquus superior" EXACT [FMA:49039]
synonym: "superior oblique" EXACT [FMA:49039]
synonym: "superior oblique muscle" EXACT []
xref: AAO:0010119
xref: FMA:49039
xref: MA:0001277
xref: NCIT:C33688
xref: SCTID:181155005
xref: TAO:0000738
xref: UMLS:C0582816 {source="ncithesaurus:Superior_Oblique_Muscle"}
xref: VHOG:0001131
xref: Wikipedia:Superior_oblique_muscle
xref: ZFA:0000738
is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI
property_value: UBPROP:0000001 "Cranial nerve IV innervated; dorsal in the obliquus group.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010119", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001131", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0006322
name: inferior rectus extraocular muscle
namespace: uberon
def: "A muscle in the orbit that depresses, adducts, and helps extort (rotate laterally) the eye. The inferior rectus muscle is the only muscle that is capable of depressing the pupil when it is in a fully abducted position." [Wikipedia:Inferior_rectus_muscle]
subset: vertebrate_core
synonym: "inferior rectus" EXACT [FMA:49036]
synonym: "inferior rectus muscle" EXACT []
synonym: "m. rectus inferior" EXACT []
synonym: "musculus rectus inferior" EXACT [AAO:0010101]
synonym: "musculus rectus inferior bulbi" RELATED LATIN [Wikipedia:Inferior_rectus_muscle]
synonym: "ventral recti" RELATED PLURAL [TAO:0000457]
synonym: "ventral rectus" RELATED [TAO:0000457]
synonym: "ventral rectus extraocular muscle" EXACT [VHOG:0001130]
xref: AAO:0010101
xref: FMA:49036
xref: MA:0001279
xref: NCIT:C32790
xref: SCTID:181154009
xref: TAO:0000457
xref: UMLS:C0582819 {source="ncithesaurus:Inferior_Rectus_Muscle"}
xref: VHOG:0001130
xref: Wikipedia:Inferior_rectus_muscle
xref: ZFA:0000457
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI
property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001130", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0006323
name: superior rectus extraocular muscle
namespace: uberon
def: "The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction." [Wikipedia:Superior_rectus_muscle]
subset: pheno_slim
subset: vertebrate_core
synonym: "dorsal recti" RELATED PLURAL [ZFA:0000345]
synonym: "dorsal rectus" RELATED [TAO:0000345]
synonym: "dorsal rectus extraocular muscle" EXACT [VHOG:0001128]
synonym: "m. rectus superior" EXACT []
synonym: "musculus rectus superior" EXACT [AAO:0010099]
synonym: "musculus rectus superior bulbi" RELATED LATIN [Wikipedia:Superior_rectus_muscle]
synonym: "superior rectus" EXACT [FMA:49035]
synonym: "superior rectus muscle" EXACT []
xref: AAO:0010099
xref: FMA:49035
xref: MA:0001282
xref: NCIT:C33694
xref: SCTID:181153003
xref: TAO:0000345
xref: UMLS:C0582818 {source="ncithesaurus:Superior_Rectus_Muscle"}
xref: VHOG:0001128
xref: Wikipedia:Superior_rectus_muscle
xref: ZFA:0000345
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png xsd:anyURI
property_value: UBPROP:0000003 "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001128", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.331", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0006330
name: anterior lingual gland
namespace: uberon
def: "the small glands located near the apex of the tongue on either side of the frenulum" [ISBN:0-683-40008-8, MP:0009518]
subset: pheno_slim
synonym: "anterior lingual salivary gland" EXACT [FMA:59796]
synonym: "Bauhin's glands" EXACT [Wikipedia:Anterior_lingual_glands]
synonym: "Blandin's glands" EXACT [Wikipedia:Anterior_lingual_glands]
synonym: "lingual salivary gland" EXACT [FMA:59796]
synonym: "Nuhn's glands" EXACT [Wikipedia:Anterior_lingual_glands]
xref: FMA:59796
xref: MA:0002701
xref: NCIT:C32987
xref: SCTID:362179003
xref: UMLS:C0930558 {source="ncithesaurus:Lingual_Salivary_Gland"}
xref: Wikipedia:Anterior_lingual_glands
is_a: UBERON:0003409 ! gland of tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006332
name: nasal capsule
namespace: uberon
def: "An embryonic cartilaginous frame, the nasal capsule, an evolutionary-conserved structure composed of ventral and dorsal components: the mesethmoid and ectethmoid cartilages, respectively.[PMID]." [PMID:21270050]
subset: pheno_slim
subset: vertebrate_core
synonym: "cartilaginous nasal capsule" EXACT []
synonym: "tripartite nasal capsule" NARROW [PMID:25312359]
xref: AAO:0000313
xref: EMAPA:17852
xref: FMA:320527
xref: MA:0000283
xref: TAO:0002035
xref: ZFA:0005507
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0000004 {source="MA"} ! nose
property_value: IAO:0000116 "consider splitting this class. Developing cartilage in mammals?" xsd:string {source="ZFA"}
property_value: UBPROP:0000001 "Multi-tissue structure that is the connective tissue sheath that surrounds, except for external opening(s) in adult, the olfactory epithelium.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0002035", ontology="TAO", source="TAO:wd"}
property_value: UBPROP:0000001 "Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000313", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000005 "Development information from Brian Hall, Bones and Cartilage: Developmental Skeletal Biology.[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0002035", ontology="TAO", source="Curator"}
property_value: UBPROP:0000008 "by the process of folding of the cartilaginous nasal capsule during fetal development, outpouchings of the main nasal chamber become enlarged (primary pneumatization) (Witmer, 1999; Macrini, 2014). The resulting paranasal recesses may or may not expand farther into the bodies of facial and basicranial bones (secondary pneumatization). Histori- cally, the result of these processes, paranasal recesses and sinuses, respectively, have not always been distin- guished (see further discussion in Rossie, 2006). Yet, in either case the nasal fossa becomes subdivided into a central nasal chamber and more peripheral paranasal chambers (Smith et al., 2014; Curtis and Van Valken- burgh, 2014)[PMID:25312359]" xsd:string
property_value: UBPROP:0000008 "In Aves: The nasal capsule is dorsoventrally divided into two parts: the upper part, the ectethmoid, serves olfaction and is composed of the lamina cribosa, the crista galli apophysis and the conchae. The lower part, the mesethmoid, is a thick cartilage bar extending from the corpus sphenoidalis to the rostral extremity of the nose (Fig. 1A-B). In the avian embryo, the mesethmoid constitutes the cartilage primordium of the upper beak." xsd:string
property_value: UBPROP:0000008 "In avians, the mesethmoid supports upper beak formation, whereas the ectethmoid comprises elements of the olfactory system, including the lamina cribosa, the crista galli apophysis and the conchae." xsd:string
property_value: UBPROP:0000008 "In most mammals, the nasal capsule remains unossified, except in mammals where the ethmoid portion ossifies to form the turbinates" xsd:string {source="ISBN:0073040584"}
property_value: UBPROP:0000012 "Connective tissue sheath in TAO. Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium[AAO]. Cartilaginous envelope containing the nasal organ[FishBase]" xsd:string {external_ontology="TAO"}

[Term]
id: UBERON:0006334
name: posterior lateral line
namespace: uberon
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFA:0000944]
subset: dubious_grouping
subset: efo_slim
synonym: "pll" EXACT [ZFA:0000944]
xref: AAO:0011024
xref: EFO:0003595
xref: HBA:4413
xref: TAO:0000944
xref: XAO:0000465
xref: ZFA:0000944
is_a: UBERON:0010202 ! lateral line
property_value: IAO:0000116 "check XAO/AAO" xsd:string
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000944", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: develops_from posterior lateral line primordium (TAO:0001157)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000944", ontology="TAO"}
property_value: UBPROP:0000002 "relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000944", ontology="TAO"}

[Term]
id: UBERON:0006345
name: stapedial artery
namespace: uberon
def: "A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]." [MP:0004665]
subset: pheno_slim
synonym: "stapedial" RELATED [EHDAA2:0001908]
synonym: "stapedial artery temporary" EXACT [EHDAA2:0001908]
xref: EHDAA2:0001908
xref: EMAPA:17313
xref: FMA:79390
xref: MA:0002044
xref: NCIT:C34304
xref: SCTID:361518009
xref: UMLS:C1284048 {source="ncithesaurus:Stapedial_Artery"}
xref: Wikipedia:Stapedial_branch_of_posterior_auricular_artery
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear

[Term]
id: UBERON:0006360
name: tongue intermolar eminence
namespace: uberon
def: "A large swelling on the dorsal surface of the tongue at the junction between the anterior two-thirds and posterior one-third." [ISBN:0080573371]
synonym: "intermolar eminence" EXACT [MA:0001590]
xref: EMAPA:18273
xref: MA:0001590
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0009471 ! dorsum of tongue

[Term]
id: UBERON:0006495
name: osseus cochlear canal
namespace: uberon
comment: Design pattern note: check if conforms to foramen pattern
subset: pheno_slim
synonym: "osseous cochlear canal" EXACT [FMA:75666]
xref: EMAPA:35621
xref: FMA:75666
xref: MA:0001183
relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea

[Term]
id: UBERON:0006496
name: external acoustic meatus osseus part
namespace: uberon
synonym: "bony external acoustic meatus" RELATED [FMA:61290]
synonym: "osseous external acoustic meatus" EXACT []
synonym: "osseous external acoustic tube" EXACT [FMA:61290]
synonym: "osseous part of external acoustic meatus" EXACT [FMA:61290]
xref: EMAPA:37526 {source="MA:th"}
xref: FMA:61290
xref: MA:0001235
relationship: part_of UBERON:0001352 ! external acoustic meatus

[Term]
id: UBERON:0006531
name: oculomotor muscle
namespace: uberon
def: "The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris." [MESH:A02.633.567.700]
xref: CALOHA:TS-0305
xref: MA:0002432
xref: MESH:D009801
xref: NCIT:C33199
xref: UMLS:C0028863 {source="ncithesaurus:Oculomotor_Muscle"}
is_a: UBERON:0001601 {source="MA"} ! extra-ocular muscle
property_value: UBPROP:0000012 "we follow MA in making this a subclass of extra-ocular muscle but the distinction is not clear" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0006532
name: oblique extraocular muscle
namespace: uberon
xref: FMA:312383
xref: MA:0001275
is_a: UBERON:0006531 ! oculomotor muscle

[Term]
id: UBERON:0006533
name: rectus extraocular muscle
namespace: uberon
subset: pheno_slim
xref: FMA:312408
xref: MA:0001278
is_a: UBERON:0006531 ! oculomotor muscle

[Term]
id: UBERON:0006582
name: statolith
namespace: uberon
def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP,CJM]." [https://orcid.org/0000-0002-6601-2165]
synonym: "calcareous statoliths" NARROW []
relationship: part_of UBERON:0006583 ! statocyst
property_value: RO:0002161 NCBITaxon:7742

[Term]
id: UBERON:0006583
name: statocyst
namespace: uberon
def: "A balance sensory receptor present in some aquatic invertebrates[WP]." [Wikipedia:Statocyst]
subset: organ_slim
synonym: "balance organ" RELATED []
synonym: "statocyst organ" RELATED []
xref: Wikipedia:Statocyst
is_a: UBERON:0000020 ! sense organ
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/7e/Statocyst.jpg xsd:anyURI
property_value: RO:0002161 NCBITaxon:7742
property_value: RO:0002174 NCBITaxon:110815 {source="Wikipedia"}
property_value: RO:0002175 NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"}
property_value: RO:0002175 NCBITaxon:6073
property_value: RO:0002175 NCBITaxon:6544
property_value: RO:0002175 NCBITaxon:6657
property_value: RO:0002175 NCBITaxon:7586

[Term]
id: UBERON:0006585
name: vestibular organ
namespace: uberon
def: "An organ that is part of a vestibular system." [OBOL:automatic]
synonym: "balance organ" EXACT [https://orcid.org/0000-0002-6601-2165]
xref: BIRNLEX:2519
xref: UMLS:C0682674 {source="BIRNLEX:2519"}
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0004681 ! vestibular system

[Term]
id: UBERON:0006586
name: otolymph
namespace: uberon
alt_id: UBERON:0007793
def: "Transudate located within the osseus labyrinth. Otolymph can be further classified with respect to whether it is within the membranous labyrinth (endolymph) or outside the mebranous labyrinth (perilymph)." [http://orcid.org/0000-0002-6601-2165]
synonym: "labyrinthine fluid" RELATED [MESH:A12.207.571]
xref: EMAPA:36547
xref: GAID:1183
xref: MA:0002527
xref: MESH:A12.207.571
xref: NCIT:C33231
xref: UMLS:C1518679 {source="ncithesaurus:Otolymph"}
relationship: part_of UBERON:0001844 {source="Wikipedia:Perilymph"} ! cochlea
property_value: UBPROP:0000001 "Fluids found within the osseous labyrinth (PERILYMPH) and the membranous labyrinth (ENDOLYMPH) of the inner ear. (From Gray's Anatomy, 30th American ed, p1328, 1332[MESH:A12.207.571])" xsd:string {source="MESH:A12.207.571"}

[Term]
id: UBERON:0006616
name: right external ear
namespace: uberon
def: "An external ear that is in the right side of a multicellular organism." [OBOL:automatic]
subset: pheno_slim
synonym: "right auricular region" BROAD [FMA:53643]
xref: EMAPA:37361 {source="MA:th"}
xref: FMA:53643
xref: SCTID:368567003
is_a: UBERON:0001691 ! external ear
property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI

[Term]
id: UBERON:0006617
name: left external ear
namespace: uberon
def: "An external ear that is in the left side of a multicellular organism." [OBOL:automatic]
subset: pheno_slim
synonym: "left auricular region" BROAD [FMA:53644]
xref: EMAPA:37360 {source="MA:th"}
xref: FMA:53644
xref: SCTID:368589004
is_a: UBERON:0001691 ! external ear
property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI

[Term]
id: UBERON:0006688
name: sublingual caruncle
namespace: uberon
def: "The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity." [Wikipedia:Sublingual_caruncle]
synonym: "caruncula sublingualis" RELATED LATIN [Wikipedia:Sublingual_caruncle]
xref: EMAPA:18961
xref: FMA:77273
xref: SCTID:85139009
xref: Wikipedia:Sublingual_caruncle
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 ! tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png xsd:anyURI

[Term]
id: UBERON:0006689
name: frenulum of tongue
namespace: uberon
def: "A small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [MGI:anna]
subset: pheno_slim
synonym: "frenulum" BROAD []
synonym: "frenulum linguae" EXACT LATIN [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum linguae" EXACT [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum linguæ" EXACT [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum of the tongue" EXACT [Wikipedia:Frenulum_of_tongue]
synonym: "lingual frenulum" EXACT [Wikipedia:Frenulum_of_tongue]
synonym: "lingual frenum" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "tongue frenulum" EXACT [FMA:54659]
xref: EMAPA:18656
xref: FMA:54659
xref: NCIT:C87076
xref: SCTID:264113009
xref: UMLS:C2339893 {source="ncithesaurus:Frenulum"}
xref: Wikipedia:Frenulum_of_tongue
is_a: UBERON:0005020 ! mucosa of tongue
relationship: part_of UBERON:0001723 ! tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png xsd:anyURI

[Term]
id: UBERON:0006699
name: foramen cecum of tongue
namespace: uberon
def: "The median pit on the dorsum of the posterior part of the tongue, from which the limbs of a V-shaped furrow run forward and outward; the foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland" [https://github.com/obophenotype/uberon/issues/281, MP:0013234]
subset: pheno_slim
synonym: "blind foramen of tongue" EXACT [MP:0013234]
synonym: "cecal foramen of tongue" EXACT [MP:0013234]
synonym: "ductus lingualis" EXACT [MP:0013234]
synonym: "f. caecum linguae" RELATED LATIN [Wikipedia:Foramen_cecum_(tongue)]
synonym: "foramen caecum linguae" EXACT LATIN [Wikipedia:Foramen_cecum_(tongue)]
synonym: "foramen cecum of tongue" EXACT [FMA:54828]
synonym: "foramen of Morgagni" EXACT [FMA:54828]
synonym: "Morand's foramen" EXACT [FMA:54828]
synonym: "Morgagni foramen" EXACT [MP:0013234]
xref: EMAPA:17069
xref: FMA:54828
xref: MA:0000725
xref: SCTID:368738001
xref: Wikipedia:Foramen_cecum_(tongue)
relationship: part_of UBERON:0003357 {source="EHDAA2"} ! epithelium of tongue
relationship: part_of UBERON:0009471 ! dorsum of tongue
property_value: depicted:by Foramen:caecum.png xsd:anyURI
property_value: IAO:0000116 "consider merging with FC of thyroid" xsd:string

[Term]
id: UBERON:0006722
name: manubrium of malleus
namespace: uberon
def: "The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane." [http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus]
subset: pheno_slim
synonym: "handle of malleus" RELATED [MA:0002985]
synonym: "malleal manubrium" RELATED [MA:0002985]
synonym: "malleus handle" EXACT [FMA:52760]
synonym: "malleus handle" RELATED [MA:0002985]
synonym: "malleus manubrium" RELATED [MA:0002985]
synonym: "manubrium mallei" RELATED [MA:0002985]
synonym: "manubrium of malleus" EXACT [FMA:52760]
synonym: "manubrium of malleus" RELATED [MA:0002985]
xref: FMA:52760
xref: MA:0002985
xref: SCTID:264091009
relationship: part_of UBERON:0001689 ! malleus bone
property_value: UBPROP:0000008 "Conical in shape, with the cone extending inwards (e.g. mammals) or outwards (e.g. in birds)" xsd:string {source="http://audilab.bmed.mcgill.ca/AudiLab/teach/me_saf/me_saf.html"}

[Term]
id: UBERON:0006723
name: cochlear modiolus
namespace: uberon
def: "the central cone shaped core of spongy bone about which turns the spiral canal" [ISBN:0-683-40008-8, MGI:anna, MP:0003309]
subset: organ_slim
subset: pheno_slim
synonym: "cochlea modiolus" EXACT [FMA:61278]
synonym: "columella cochleae" RELATED [BTO:0001693]
synonym: "modiolus" BROAD [MA:0001182]
synonym: "modiolus cochleae" EXACT LATIN [FMA:61278, FMA:TA]
synonym: "modiolus of cochlea" EXACT [FMA:61278]
xref: BTO:0001693
xref: EMAPA:35575
xref: FMA:61278
xref: MA:0001182
xref: NCIT:C33135
xref: SCTID:361314007
xref: UMLS:C0229503 {source="ncithesaurus:Modiolus"}
xref: Wikipedia:Modiolus_(cochlea)
relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png xsd:anyURI

[Term]
id: UBERON:0006724
name: osseus spiral lamina
namespace: uberon
def: "The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani." [Wikipedia:Osseous_spiral_lamina]
synonym: "lamina modioli cochleae" EXACT LATIN [FMA:77710, FMA:TA]
synonym: "lamina of modiolus cochleae" EXACT [FMA:77710]
synonym: "lamina of modiolus of cochlea" EXACT [FMA:77710]
synonym: "osseous spiral lamina" EXACT []
synonym: "osseous spiral lamina of cochlea" EXACT [FMA:77710]
synonym: "spiral lamina" RELATED [MESH:A09.246.631.246.930]
synonym: "spiral lamina of modiolus" EXACT []
xref: EMAPA:35622
xref: FMA:77710
xref: MA:0001184
xref: MESH:D013137
xref: SCTID:361315008
xref: Wikipedia:Osseous_spiral_lamina
relationship: part_of UBERON:0006723 {source="FMA"} ! cochlear modiolus
relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea

[Term]
id: UBERON:0006725
name: spiral ligament
namespace: uberon
alt_id: UBERON:0028186
def: "A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis." [https://github.com/obophenotype/mouse-anatomy-ontology/issues/71, Wikipedia:Spiral_ligament]
subset: pheno_slim
synonym: "ligamentum spirale ductus cochlearis" EXACT LATIN [Wikipedia:Spiral_ligament]
synonym: "spiral cochlear ligament" EXACT LATIN []
synonym: "spiral ligament of cochlea" EXACT [BIRNLEX:2524]
synonym: "spiral ligament of cochlear duct" EXACT [FMA:77834]
xref: BIRNLEX:2524
xref: EMAPA:35798
xref: FMA:77834
xref: MA:0001192
xref: MESH:D055493
xref: SCTID:279840005
xref: UMLS:C0229477
xref: Wikipedia:Spiral_ligament
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
property_value: UBPROP:0000012 "this is not classified as a ligament in FMA" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0006726
name: outer canthus
namespace: uberon
def: "A corner of the outer (lateral) part of an eye." [http://orcid.org/0000-0002-6601-2165]
comment: see also FMA:59321
synonym: "lateral angle of eye" RELATED [FMA:59321]
synonym: "lateral canthus" RELATED [MA:0001264]
synonym: "lateral canthus of eye" EXACT [FMA:59321]
synonym: "lateral palpebral commissure" EXACT [FMA:59315]
synonym: "outer canthi" RELATED PLURAL []
synonym: "temporal canthus" RELATED []
xref: EHDAA2:0000910
xref: EHDAA:9039
xref: EMAPA:37458 {source="MA:th"}
xref: FMA:59315
xref: MA:0001264
xref: NCIT:C49597
xref: SCTID:362525004
xref: UMLS:C1711189 {source="ncithesaurus:Outer_Canthus"}
xref: VHOG:0001571
is_a: UBERON:0006742 ! canthus
property_value: UBPROP:0000001 "The angle at the end of the palpebral fissure, the slit between the eyelids, close to the temporal region of the skull. [ISBN:0124020607, p.263][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001571", ontology="VHOG", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0006742
name: canthus
namespace: uberon
def: "A canthus is a corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface." [Wikipedia:Canthus]
synonym: "angle of eye" RELATED [FMA:59222]
synonym: "bicanthal" RELATED [Wikipedia:Canthus]
synonym: "bicanthal plane" RELATED [Wikipedia:Canthus]
synonym: "canthi" RELATED PLURAL [Wikipedia:Canthus]
synonym: "canthoplasty" RELATED [Wikipedia:Canthus]
synonym: "canthorum" RELATED [Wikipedia:Canthus]
synonym: "canthus (anatomy)" RELATED [Wikipedia:Canthus]
synonym: "canthus of eye" RELATED [FMA:59222]
synonym: "palpebral commissure" EXACT [FMA:59222]
xref: EMAPA:37457 {source="MA:th"}
xref: FMA:59222
xref: SCTID:181145006
xref: Wikipedia:Canthus
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png xsd:anyURI
property_value: UBPROP:0000007 "canthal" xsd:string

[Term]
id: UBERON:0006761
name: corneo-scleral junction
namespace: uberon
def: "the edge of the cornea where it joins the sclera; the limbus is a common site for the occurrence of corneal epithelial neoplasm" [MP:0013477]
comment: This location has parts such as blood vessels etc. See PMC2868485, http://www.ncbi.nlm.nih.gov/pubmed/2695343
subset: efo_slim
subset: pheno_slim
subset: vertebrate_core
synonym: "cornea limbus" EXACT []
synonym: "corneal limbus" EXACT [GAID:896]
synonym: "corneal limbus" EXACT [FMA:58342]
synonym: "corneal-scleral limbus" EXACT [PMID:17051547]
synonym: "corneoscleral junction" EXACT [GAID:896]
synonym: "limbus corneae" EXACT LATIN [Wikipedia:Corneal_limbus]
synonym: "limbus corneae" RELATED LATIN [Wikipedia:Corneal_limbus]
synonym: "sclerocorneal junction" EXACT [FMA:58342]
synonym: "sclerocorneal limbus" EXACT [GAID:896]
xref: EFO:0001403
xref: EMAPA:37835 {source="MA:th"}
xref: FMA:58342
xref: GAID:896
xref: MESH:D016850
xref: SCTID:63716004
xref: Wikipedia:Corneal_limbus
xref: ZFA:0005570
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/3d/Limbus.png xsd:anyURI

[Term]
id: UBERON:0006762
name: suspensory ligament of lens
namespace: uberon
def: "The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]." [Wikipedia:Zonule_of_Zinn]
subset: pheno_slim
subset: vertebrate_core
synonym: "ciliary zonule" EXACT [FMA:58838]
synonym: "ciliary zonule" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "suspensory ligament of the lens" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "Zinn's membrane" EXACT [FMA:58838]
synonym: "zonula" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonula ciliaris" RELATED LATIN [Wikipedia:Zonule_of_Zinn]
synonym: "zonula ciliaris" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonular fiber" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonule" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonule of Zinn" EXACT [FMA:58838]
synonym: "zonules" EXACT PLURAL [ZFA:0005573]
xref: FMA:58838
xref: SCTID:362524000
xref: Wikipedia:Zonule_of_Zinn
xref: ZFA:0005573
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg xsd:anyURI

[Term]
id: UBERON:0006763
name: epithelium of conjunctiva
namespace: uberon
def: "Layer of nonkeratinized squamous epithelium lining the conjunctiva, overlying scleral tissue" [http://orcid.org/0000-0002-6601-2165]
subset: efo_slim
subset: pheno_slim
synonym: "conjunctiva epithelium" EXACT [FMA:62131]
synonym: "conjunctival epithelium" EXACT [BTO:0005131]
xref: BTO:0005131
xref: EFO:0001916
xref: FMA:62131
xref: NCIT:C32365
xref: UMLS:C1179037 {source="ncithesaurus:Conjunctival_Epithelium"}
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001811 {source="BTO"} ! conjunctiva

[Term]
id: UBERON:0006813
name: nasal skeleton
namespace: uberon
def: "Structural framework that provides support to the nasal sacs and ducts." [AAO:0000320]
subset: pheno_slim
synonym: "skeleton of nose" EXACT [FMA:60116]
xref: AAO:0000320
xref: FMA:60116
xref: SCTID:281486007
relationship: part_of UBERON:0000004 {source="FMA"} ! nose

[Term]
id: UBERON:0006837
name: tegmen tympani
namespace: uberon
def: "The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] ." [http://education.yahoo.com/reference/gray/subjects/subject/230]
subset: dubious_grouping
synonym: "crista parotica" RELATED HOMOLOGY [AAO:0000116]
synonym: "crista prootica" RELATED HOMOLOGY [AAO:0000116, http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html]
synonym: "paries tegmentalis cavi tympani" EXACT LATIN [FMA:56002, FMA:TA]
synonym: "processus muscularis capsulae auditivae" RELATED [AAO:0000116]
synonym: "processus squamosus" RELATED HOMOLOGY [AAO:0000116]
synonym: "tegmental roof of tympanic cavity" EXACT [FMA:56002]
synonym: "tegmental wall of tympanic cavity" EXACT [FMA:56002]
xref: AAO:0000116
xref: FMA:56002
xref: Wikipedia:Tegmental_wall_of_tympanic_cavity
relationship: part_of UBERON:0001756 ! middle ear
property_value: IAO:0000116 "TODO - check AAO; grouping is made on basis of related synonym. Crista parotica: seems to be the same as the crista prootica. However, since this lateral ridge of the otic capsule is frequently formed by the opisthotic, rather than the prootic, this may be a better name.; Crista prootica: a ledge or ridge which elaborates the dorsal surface of the prootic or, more generally, the roof of the otic capsule, laterally. The crista may extend posteriorly & laterally, continuous with the paroccipital process, and/or anteriorly or anteroventrally to protect cranial nerve foramina and form part of the fenestra ovalis/vestibuli. In basal tetrapodomorphs and tetrapods, the crista prootica forms the floor of the posttemporal fenestra. See The Prootic. In many tetrapods, the crista prootica is not ossified, or incompletely ossified. However, in frogs, the crista is the main strut joining the skull roofing bones (frontoparietals) with the squamosals. The crista prootica has a similarly expanded role in mammals where it forms an important part of the epitympanic recess and anchors the tympanohyal." xsd:string {source="http://www.palaeos.com"}

[Term]
id: UBERON:0006906
name: ala of nose
namespace: uberon
def: "The lateral surface parts of the external nose, inferiorly, surrounding the naris[EoM]." [DOI:10.1002/ajmg.a.32600, Wikipedia:Ala_of_nose]
subset: pheno_slim
synonym: "ala nasi" RELATED LATIN [Wikipedia:Ala_of_nose]
synonym: "ala nasi" RELATED [Wikipedia:Ala_of_nose]
synonym: "ala of the nose" RELATED [Wikipedia:Ala_of_nose]
synonym: "nasal ala" EXACT [FMA:59519]
synonym: "wing of nose" RELATED [Wikipedia:Ala_of_nose]
synonym: "wing of the nose" RELATED [Wikipedia:Ala_of_nose]
synonym: "wings of the nose" RELATED [Wikipedia:Ala_of_nose]
xref: FMA:59519
xref: SCTID:361345006
xref: Wikipedia:Ala_of_nose
relationship: part_of UBERON:0007827 ! external nose
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI

[Term]
id: UBERON:0006916
name: non-keratinized epithelium of tongue
namespace: uberon
def: "A non-keratinized stratified squamous epithelium that is part of a tongue." [OBOL:automatic]
xref: FMA:62130
is_a: UBERON:0006919 ! tongue squamous epithelium
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006918
name: parakeratinized epithelium of tongue
namespace: uberon
def: "A parakeratinized epithelium that is part of a tongue." [OBOL:automatic]
synonym: "tongue parakeratinized epithelium" EXACT []
xref: FMA:74908
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0006919
name: tongue squamous epithelium
namespace: uberon
def: "A squamous epithelium that is part of a tongue." [OBOL:automatic]
subset: pheno_slim
synonym: "squamous epithelium of tongue" EXACT [OBOL:automatic]
xref: MA:0002786
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0005020 ! mucosa of tongue
property_value: UBPROP:0000012 "this is a singleton subclass of tongue epithelium in MA" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0006932
name: vestibular epithelium
namespace: uberon
def: "An epithelium that is part of a vestibular labyrinth." [OBOL:automatic]
synonym: "epithelium of vestibular labyrinth" EXACT [OBOL:automatic]
synonym: "inner ear vestibular component epithelium" EXACT [RETIRED_EHDAA2:0000834]
synonym: "vestibular sensory epithelium" EXACT [FMA:75606]
xref: BTO:0005581
xref: EMAPA:32884
xref: EMAPA:35921
xref: FMA:75606
xref: MA:0002892
xref: RETIRED_EHDAA2:0000834
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001862 ! vestibular labyrinth

[Term]
id: UBERON:0006935
name: crista ampullaris neuroepithelium
namespace: uberon
def: "An epithelium that is part of a crista ampullaris." [OBOL:automatic]
subset: pheno_slim
synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870]
synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636]
xref: FMA:75636
xref: MA:0002870
is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium
relationship: part_of UBERON:0004721 {source="MA"} ! crista ampullaris

[Term]
id: UBERON:0006937
name: inner ear epithelium
namespace: uberon
def: "the epithelial cell layer containing the sensory hair cells and their associated sensory nerve terminals" [MGI:csmith, MP:0003308]
subset: pheno_slim
xref: EMAPA:32883
xref: MA:0001189
is_a: UBERON:0015807 ! ear epithelium
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0006938
name: pinna surface epithelium
namespace: uberon
def: "An epithelium that is part of a pinna." [OBOL:automatic]
xref: EHDAA2:0001470
xref: EHDAA:8983
xref: EMAPA:17592
xref: VHOG:0000632
is_a: UBERON:0015814 ! outer ear epithelium
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0007037
name: mechanosensory system
namespace: uberon
xref: BILA:0000142
is_a: UBERON:0001032 ! sensory system

[Term]
id: UBERON:0007163
name: superior nasal meatus
namespace: uberon
def: "The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha." [Wikipedia:Superior_nasal_meatus]
synonym: "meatus nasi superior" RELATED LATIN [Wikipedia:Superior_nasal_meatus]
synonym: "superior meatus" RELATED [Wikipedia:Superior_nasal_meatus]
xref: EMAPA:19276
xref: FMA:53138
xref: FMA:57480
xref: SCTID:310213007
xref: Wikipedia:Superior_nasal_meatus
is_a: UBERON:0015216 ! nasal meatus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray196.png xsd:anyURI
property_value: IAO:0000116 "TODO - check FMA" xsd:string

[Term]
id: UBERON:0007223
name: osseus cochlea
namespace: uberon
def: "The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve." [http://www.innerbody.com/image_nerv14/nerv175.html]
subset: pheno_slim
xref: EMAPA:35620
xref: MA:0000239
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001839 ! bony labyrinth
relationship: part_of UBERON:0001844 ! cochlea
property_value: IAO:0000116 "TODO - check this. in MA, cochlea is not part of the bony labyrinth" xsd:string

[Term]
id: UBERON:0007227
name: superior vestibular nucleus
namespace: uberon
def: "The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus." [Wikipedia:Superior_vestibular_nucleus]
synonym: "Bechterew's nucleus" RELATED [Wikipedia:Superior_vestibular_nucleus]
synonym: "Bekhterevs nucleus" RELATED [BTO:0004372]
synonym: "nucleus of Bechterew" EXACT [FMA:54617]
synonym: "nucleus vestibularis superior" RELATED LATIN [Wikipedia:Superior_vestibular_nucleus]
xref: BAMS:SUV
xref: BAMS:SuVe
xref: BAMS:SVN
xref: BM:Me-VS-VSS
xref: BTO:0004372
xref: CALOHA:TS-2079
xref: DHBA:12452
xref: EV:0100257
xref: FMA:54617
xref: HBA:9701
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=715
xref: MBA:217
xref: NCIT:C33703
xref: UMLS:C0228757 {source="ncithesaurus:Superior_Vestibular_Nucleus"}
xref: Wikipedia:Superior_vestibular_nucleus
is_a: UBERON:0007228 ! vestibular nucleus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png xsd:anyURI

[Term]
id: UBERON:0007228
name: vestibular nucleus
namespace: uberon
def: "A cranial nucleus for the vestibular nerve. [WP,unvetted]." [http://www.sciencedirect.com/science/article/pii/S0079612305510069, https://github.com/geneontology/go-ontology/issues/9028, Wikipedia:Vestibular_nuclei]
comment: See comments for 'vestibular nuclear complex.
synonym: "vestibular nucleus of acoustic nerve" EXACT [FMA:54602]
synonym: "vestibular nucleus of eighth cranial nerve" EXACT [FMA:54602]
synonym: "vestibular VIII nucleus" EXACT [MA:0001032]
xref: CALOHA:TS-2078
xref: EMAPA:35923
xref: EV:0100254
xref: FMA:54602
xref: MA:0001032
xref: NCIT:C12821
xref: SCTID:362462004
xref: UMLS:C0042600 {source="ncithesaurus:Vestibular_Nucleus"}
xref: Wikipedia:Vestibular_nuclei
relationship: part_of UBERON:0002673 ! vestibular nuclear complex
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png xsd:anyURI

[Term]
id: UBERON:0007230
name: lateral vestibular nucleus
namespace: uberon
def: "One of the nuclei comprising the vestibular nuclear complex. In some mammals, e.g., primates, it is further subdivided into subnuclei. It therefore differs in appearance and topology in different mammals." [NLX:144002]
synonym: "Deiter's nucleus" EXACT [FMA:54614]
synonym: "Deiters nucleus" RELATED [BTO:0004370]
synonym: "Deiters' nucleus" EXACT [FMA:54614]
synonym: "lateral nucleus of Deiters" EXACT [FMA:54614]
synonym: "nucleus of Deiters" EXACT [FMA:54614]
synonym: "nucleus vestibularis lateralis" RELATED LATIN [Wikipedia:Lateral_vestibular_nucleus]
xref: BAMS:LAV
xref: BAMS:LVe
xref: BAMS:LVN
xref: BM:Me-VS-VSL
xref: BTO:0004370
xref: DHBA:12449
xref: EMAPA:36643
xref: FMA:54614
xref: GAID:603
xref: HBA:9699
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=716
xref: MBA:209
xref: MESH:D003689
xref: NCIT:C32951
xref: NLX:144002
xref: SCTID:280176007
xref: UMLS:C0011193 {source="ncithesaurus:Lateral_Vestibular_Nucleus"}
xref: Wikipedia:Lateral_vestibular_nucleus
is_a: UBERON:0007228 ! vestibular nucleus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png xsd:anyURI

[Term]
id: UBERON:0007247
name: nucleus of superior olivary complex
namespace: uberon
def: "Any of the nuclei that comprise the superior olivary complex (superior olive). This includes both the primary nuclei such as the lateral and medial nuclei, as well as periolivary nuclei." [http://orcid.org/0000-0002-6601-2165]
subset: grouping_class
subset: pheno_slim
synonym: "superior olivary complex nucleus" EXACT [FMA:72246]
xref: FMA:72246
xref: SCTID:369024009
relationship: part_of UBERON:0002128 ! superior olivary complex
property_value: IAO:0000232 "this class exists largely for consistency with the FMA. It is defined trivially with respect to the SOC. The class may be removed in future." xsd:string

[Term]
id: UBERON:0007250
name: lingual tonsil
namespace: uberon
def: "the lymph tissue on the floor of the oropharyngeal passage, near the root of the tongue" [MGI:cwg, MP:0002385]
subset: pheno_slim
synonym: "lingual tonsillar tissue" EXACT [MA:0000773]
synonym: "tonsilla lingualis" RELATED LATIN [Wikipedia:Lingual_tonsils]
xref: FMA:54836
xref: MA:0000773
xref: NCIT:C32988
xref: SCTID:276957006
xref: UMLS:C0229871 {source="ncithesaurus:Lingual_Tonsil"}
xref: Wikipedia:Lingual_tonsils
relationship: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0010033 ! posterior part of tongue
property_value: depicted:by Illu04:tongue.jpg xsd:anyURI

[Term]
id: UBERON:0007274
name: crista of ampulla of anterior semicircular duct of membranous laybrinth
namespace: uberon
def: "A crista ampullaris neuroepithelium that is part of a anterior semicircular duct." [OBOL:automatic]
subset: vertebrate_core
synonym: "AC" RELATED [TAO:0000619]
synonym: "anterior crista" RELATED [TAO:0000619]
synonym: "anterior crista ampullaris" EXACT [ZFA:0000619]
synonym: "anterior cristae" EXACT PLURAL [ZFA:0000619]
synonym: "anterior semicircular canal sensory patch" EXACT [ZFA:0000619]
synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000619]
synonym: "rostral crista" EXACT [ZFA:0000619]
synonym: "sensory patches" RELATED [TAO:0000619]
xref: FMA:75610
xref: TAO:0000619
xref: XAO:0004137
xref: ZFA:0000619
is_a: UBERON:0003238 ! epithelium of superior semicircular canal
is_a: UBERON:0006935 ! crista ampullaris neuroepithelium
relationship: part_of UBERON:0001857 ! anterior semicircular duct
property_value: IAO:0000116 "TODO - unvetted" xsd:string
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000619", ontology="TAO", source="ZFIN:curator"}

[Term]
id: UBERON:0007275
name: crista of ampulla of posterior semicircular duct of membranous laybrinth
namespace: uberon
def: "A crista ampullaris neuroepithelium that is part of a posterior semicircular duct." [OBOL:automatic]
subset: vertebrate_core
synonym: "caudal crista" EXACT [ZFA:0000566]
synonym: "PC" RELATED [TAO:0000566]
synonym: "posterior crista" RELATED [TAO:0000566]
synonym: "posterior crista ampullaris" EXACT [ZFA:0000566]
synonym: "posterior cristae" EXACT PLURAL [ZFA:0000566]
synonym: "posterior semicircular canal sensory patch" EXACT [ZFA:0000566]
synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000566]
synonym: "sensory patches" RELATED [TAO:0000566]
xref: FMA:75611
xref: TAO:0000566
xref: XAO:0004133
xref: ZFA:0000566
is_a: UBERON:0003239 ! epithelium of posterior semicircular canal
is_a: UBERON:0006935 ! crista ampullaris neuroepithelium
relationship: part_of UBERON:0001858 ! posterior semicircular duct
property_value: IAO:0000116 "TODO - unvetted" xsd:string
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000566", ontology="TAO", source="ZFIN:curator"}

[Term]
id: UBERON:0007276
name: crista of ampulla of lateral semicircular duct of membranous laybrinth
namespace: uberon
def: "A crista ampullaris neuroepithelium that is part of a lateral semicircular duct." [OBOL:automatic]
subset: vertebrate_core
synonym: "lateral crista" RELATED [TAO:0000166]
synonym: "lateral crista ampullaris" EXACT [ZFA:0000166]
synonym: "lateral cristae" EXACT PLURAL [ZFA:0000166]
synonym: "lateral semicircular canal sensory patch" EXACT [ZFA:0000166]
synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [ZFA:0000166]
synonym: "LC" RELATED [TAO:0000166]
synonym: "sensory patches" RELATED [TAO:0000166]
xref: FMA:75612
xref: TAO:0000166
xref: ZFA:0000166
is_a: UBERON:0003240 ! epithelium of lateral semicircular canal
is_a: UBERON:0006935 ! crista ampullaris neuroepithelium
relationship: part_of UBERON:0001859 ! lateral semicircular duct
property_value: IAO:0000116 "TODO - unvetted" xsd:string
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000166", ontology="TAO", source="ZFIN:curator"}

[Term]
id: UBERON:0007352
name: stria vascularis vasculature
namespace: uberon
def: "blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368]
synonym: "stria vascularis blood vessel" RELATED [MP:0004368]
synonym: "stria vascularis blood vessels" EXACT []
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct

[Term]
id: UBERON:0007354
name: cartilage of pharyngotympanic tube
namespace: uberon
def: "A triangular plate of elastic fibrocartilage that forms the cartilage component of the pharyngotympanic tube." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Cartilage_of_pharyngotympanic_tube]
synonym: "cartilage of auditory tube" EXACT [FMA:60096]
synonym: "cartilage of eustachian tube" EXACT [FMA:60096]
synonym: "cartilago tubae auditivae" EXACT LATIN [FMA:60096, FMA:TA]
synonym: "cartilago tubae auditivae; cartilago tubae auditoriae" RELATED LATIN [Wikipedia:Cartilage_of_pharyngotympanic_tube]
synonym: "cartilago tubae auditoriae" EXACT LATIN [FMA:60096, FMA:TA]
synonym: "pharyngotympanic tube cartilage" EXACT [FMA:60096]
xref: FMA:60096
xref: SCTID:362565000
xref: Wikipedia:Cartilage_of_pharyngotympanic_tube
relationship: part_of UBERON:0002393 ! pharyngotympanic tube
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray915.png xsd:anyURI

[Term]
id: UBERON:0007355
name: bony part of pharyngotympanic tube
namespace: uberon
def: "The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion." [Wikipedia:Bony_part_of_pharyngotympanic_tube]
synonym: "bony part of auditory tube" EXACT [FMA:60057]
synonym: "bony part of eustachian tube" EXACT [FMA:60057]
synonym: "osseous portion" RELATED [Wikipedia:Bony_part_of_pharyngotympanic_tube]
synonym: "osseous portion of eustachian tube" EXACT [FMA:60057]
synonym: "pars ossea (tuba auditiva)" EXACT [FMA:60057]
synonym: "pars ossea (tuba auditoria)" EXACT [FMA:60057]
synonym: "pars ossea tubae auditivae" RELATED LATIN [Wikipedia:Bony_part_of_pharyngotympanic_tube]
xref: FMA:60057
xref: SCTID:362563007
xref: Wikipedia:Bony_part_of_pharyngotympanic_tube
relationship: part_of UBERON:0002393 ! pharyngotympanic tube
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png xsd:anyURI

[Term]
id: UBERON:0007367
name: surface of tongue
namespace: uberon
def: "An anatomical surface that is part of a tongue." [OBOL:automatic]
synonym: "tongue surface" EXACT [FMA:54647]
xref: FMA:54647
xref: SCTID:314870004
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0007371
name: superior surface of tongue
namespace: uberon
def: "The upper (superior) side of the tongue." [http://orcid.org/0000-0002-6601-2165]
synonym: "dorsal surface of tongue" EXACT [FMA:54646]
xref: FMA:54646
is_a: UBERON:0007367 ! surface of tongue
property_value: IAO:0000116 "check superior/dorsal" xsd:string

[Term]
id: UBERON:0007373
name: inferior surface of tongue
namespace: uberon
def: "The lower (inferior) side of the tongue." [http://orcid.org/0000-0002-6601-2165]
synonym: "ventral surface of tongue" EXACT [FMA:54648]
synonym: "ventrum linguae" EXACT []
xref: FMA:54648
xref: SCTID:362100003
is_a: UBERON:0007367 ! surface of tongue
property_value: IAO:0000116 "check inferior/ventral" xsd:string

[Term]
id: UBERON:0007374
name: incus cartilage element
namespace: uberon
def: "A incus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic]
xref: EMAPA:18228
is_a: UBERON:0015017 ! incus endochondral element
is_a: UBERON:0035131 ! auditory ossicle cartilage element

[Term]
id: UBERON:0007619
name: limiting membrane of retina
namespace: uberon
subset: grouping_class
synonym: "retina lamina" EXACT [https://github.com/obophenotype/uberon/issues/52, MA:0001318]
xref: MA:0001318
xref: SCTID:280667001
is_a: UBERON:0001781 {source="UBERON"} ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
property_value: UBPROP:0000012 "MA does treat internal/external limiting membranes as layers - these are classified as laminae. We do not follow this convention. However, we do following MA is grouping these terms together" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0007622
name: pecten oculi
namespace: uberon
def: "A comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body." [Wikipedia:Pecten_oculi]
comment: ventral optic cup derivative
synonym: "pecten" BROAD []
xref: Wikipedia:Pecten_oculi
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001776 ! optic choroid
property_value: depicted:by https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Birdeye.jpg/700px-Birdeye.jpg xsd:anyURI

[Term]
id: UBERON:0007625
name: pigment epithelium of eye
namespace: uberon
def: "epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200]
subset: pheno_slim
synonym: "eye pigment epithelium" RELATED [MESH:A09.371.670]
xref: GAID:907
xref: MESH:D010857
is_a: UBERON:0019304 ! sensory organ epithelium
relationship: part_of UBERON:0000970 ! eye

[Term]
id: UBERON:0007633
name: nucleus of trapezoid body
namespace: uberon
def: "A nucleus embedded within the fibers of the trapezoid body." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Trapezoid_body]
synonym: "nuclei of trapezoid body" RELATED [FMA:84023]
synonym: "nucleus corporis trapezoidei" RELATED LATIN [NeuroNames:576]
synonym: "nucleus of the trapezoid body" RELATED [BAMS:NTB]
synonym: "nucleus of the trapezoid body" RELATED [BAMS:Tz]
synonym: "nucleus trapezoidalis" RELATED LATIN [NeuroNames:576]
synonym: "set of nuclei of trapezoid body" RELATED [FMA:84023]
synonym: "trapezoid gray" RELATED [BIRNLEX:745]
synonym: "trapezoid nuclear complex" EXACT [BIRNLEX:745]
synonym: "trapezoid nuclei" RELATED [BIRNLEX:745]
synonym: "Tz" BROAD ABBREVIATION [BIRNLEX:745, NIFSTD:NeuroNames_abbrevSource]
xref: BAMS:NTB
xref: BAMS:Tz
xref: BIRNLEX:745
xref: BM:NTB
xref: DHBA:12458
xref: EMAPA:35600
xref: FMA:84023
xref: HBA:9185
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=576 {source="BIRNLEX:745"}
xref: MA:0001018
xref: MBA:642
xref: SCTID:362405000
xref: UMLS:C0228436 {source="BIRNLEX:745"}
xref: UMLS:C1289449 {source="BIRNLEX:745"}
is_a: UBERON:0007247 ! nucleus of superior olivary complex
relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex

[Term]
id: UBERON:0007691
name: gustatory pore
namespace: uberon
def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project." [http://www.mondofacto.com/facts/dictionary?gustatory+pore]
synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore]
synonym: "taste pore" EXACT [FMA:63589]
xref: FMA:63589
xref: NCIT:C33738
xref: SCTID:368724008
xref: UMLS:C0226971 {source="ncithesaurus:Taste_Pore"}
relationship: part_of UBERON:0001727 {source="FMA"} ! taste bud
property_value: depicted:by Taste:bud.svg xsd:anyURI

[Term]
id: UBERON:0007770
name: osphradium
namespace: uberon
def: "The osphradium is the olfactory organ in certain molluscs, linked with the respiration organ. The main function of this is to test incoming water for silt and other possible food particles. It is used by all members of the Genus Conus." [BTO:0004995, Wikipedia:Osphradium]
subset: organ_slim
xref: BTO:0004995
xref: Wikipedia:Osphradium
is_a: UBERON:0002268 {source="BTO"} ! olfactory organ

[Term]
id: UBERON:0007804
name: sclerotic ring
namespace: uberon
def: "Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]." [Wikipedia:Sclerotic_ring]
synonym: "scleral ring" EXACT [Wikipedia:Sclerotic_ring]
xref: Wikipedia:Sclerotic_ring
is_a: UBERON:0010290 {source="PMID:17051547"} ! scleral ossicle
property_value: RO:0002161 NCBITaxon:40674

[Term]
id: UBERON:0007818
name: major alar cartilage
namespace: uberon
def: "The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose." [Wikipedia:Greater_alar_cartilage]
synonym: "cartilago alaris major" EXACT [FMA:59504]
synonym: "cartilago alaris major" RELATED LATIN [Wikipedia:Greater_alar_cartilage]
synonym: "greater alar cartilage" EXACT [FMA:59504]
xref: FMA:59504
xref: SCTID:361928006
xref: Wikipedia:Greater_alar_cartilage
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI

[Term]
id: UBERON:0007819
name: minor alar cartilage
namespace: uberon
def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [Wikipedia:Lesser_alar_cartilages]
synonym: "cartilago alaris minor" RELATED LATIN [Wikipedia:Lesser_alar_cartilages]
synonym: "lesser alar cartilage" EXACT [FMA:59507]
synonym: "lesser alar cartilages" RELATED PLURAL []
xref: FMA:59507
xref: SCTID:368118006
xref: Wikipedia:Lesser_alar_cartilages
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI

[Term]
id: UBERON:0007820
name: accessory nasal cartilage
namespace: uberon
def: "small cartilages of the nose connecting the greater alar cartilage and lateral nasal cartilage." [Wikipedia:Accessory_nasal_cartilages]
synonym: "cartilago nasi accessoriae" RELATED LATIN [Wikipedia:Accessory_nasal_cartilage]
xref: FMA:59510
xref: SCTID:368124000
xref: Wikipedia:Accessory_nasal_cartilages
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage

[Term]
id: UBERON:0007821
name: lateral nasal cartilage
namespace: uberon
def: "The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]." [Wikipedia:Lateral_nasal_cartilage]
synonym: "cartilago nasi lateralis" RELATED LATIN [Wikipedia:Lateral_nasal_cartilage]
xref: FMA:59511
xref: SCTID:278944009
xref: Wikipedia:Lateral_nasal_cartilage
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png xsd:anyURI

[Term]
id: UBERON:0007822
name: vomeronasal cartilage
namespace: uberon
def: "The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson[WP]." [Wikipedia:Vomeronasal_cartilage]
synonym: "cartilago vomeronasalis" RELATED LATIN [Wikipedia:Vomeronasal_cartilage]
synonym: "Huschke's cartilage" EXACT [FMA:59514]
synonym: "Jacobson's cartilage" EXACT [FMA:59514]
xref: FMA:59514
xref: SCTID:368123006
xref: Wikipedia:Vomeronasal_cartilage
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png xsd:anyURI

[Term]
id: UBERON:0007825
name: reticular membrane of spiral organ
namespace: uberon
def: "A reticular lamina of epithelium that is part of a spiral organ of cochlea." [OBOL:automatic]
synonym: "membrana reticularis organi spiralis" EXACT LATIN [FMA:77849, FMA:TA]
synonym: "reticular lamina" BROAD [MA:0001194]
synonym: "reticular lamina of spiral organ" EXACT [OBOL:automatic]
synonym: "reticular lamina of spiral organ of cochlea" EXACT [OBOL:automatic]
xref: EMAPA:35735
xref: FMA:77849
xref: MA:0001194
relationship: part_of UBERON:0002227 ! spiral organ of cochlea

[Term]
id: UBERON:0007827
name: external nose
namespace: uberon
def: "External part of the nose containing the external nares." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
synonym: "nose" RELATED []
xref: EMAPA:37831 {source="MA:th"}
xref: FMA:59515
xref: NCIT:C32566
xref: SCTID:265785009
xref: UMLS:C0458561 {source="ncithesaurus:External_Nose"}
relationship: part_of UBERON:0000004 ! nose
property_value: UBPROP:0000001 "Subdivision of face, the exterior of the nose, which consists of a root, dorsum, tip, columella, and right and left alae[FMA:59515]." xsd:string {source="FMA:59515"}

[Term]
id: UBERON:0007833
name: osseus semicircular canal
namespace: uberon
def: "the organ of balance composed of three long bony tubes of the labyrinth" [MESH:A09.246.631.663, MGI:cwg, MP:0002428]
subset: pheno_slim
synonym: "osseous semicircular canal" EXACT [OBOL:automatic]
xref: MA:0000250
relationship: part_of UBERON:0001839 {source="MA"} ! bony labyrinth
relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal
property_value: IAO:0000116 "consider adding FMA:60186 ! Semicircular canal here, as it is part of the bony labyrinth" xsd:string

[Term]
id: UBERON:0008340
name: nasal bridge
namespace: uberon
def: "A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]." [DOI:10.1002/ajmg.a.32600, Wikipedia:Nasal_bridge]
subset: pheno_slim
xref: MA:0002874
xref: Wikipedia:Nasal_bridge
is_a: UBERON:0000061 {source="AEO"} ! anatomical structure
relationship: part_of UBERON:0000004 ! nose

[Term]
id: UBERON:0008341
name: columella nasi
namespace: uberon
def: "The tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]." [DOI:10.1002/ajmg.a.32600]
subset: pheno_slim
synonym: "columella" RELATED [FMA:59725]
synonym: "columella of nose" EXACT []
synonym: "nasal columella" EXACT []
xref: EMAPA:37832 {source="MA:th"}
xref: FMA:59725
xref: SCTID:361930008
relationship: part_of UBERON:0007827 {source="FMA"} ! external nose

[Term]
id: UBERON:0008522
name: nasal muscle
namespace: uberon
def: "Any muscle organ that is part of an nose." [OBOL:automatic]
synonym: "muscle of nose" EXACT [OBOL:automatic]
xref: FMA:73758
xref: NCIT:C33158
xref: SCTID:244730009
xref: UMLS:C0224219 {source="ncithesaurus:Nasal_Muscle"}
relationship: part_of UBERON:0000004 ! nose

[Term]
id: UBERON:0008582
name: superior longitudinal muscle of tongue
namespace: uberon
def: "A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis linguæ superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "musculus longitudinalis superior" EXACT [FMA:46693]
synonym: "musculus longitudinalis superior linguae" RELATED LATIN [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "superior lingualis" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "superior longitudinal muscle" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
xref: FMA:46693
xref: SCTID:244790006
xref: Wikipedia:Superior_longitudinal_muscle_of_tongue
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/3/30/Musculuslongitudinalissuperiorlinguae.png xsd:anyURI

[Term]
id: UBERON:0008583
name: transverse muscle of tongue
namespace: uberon
def: "A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue]
synonym: "intrinsic tongue muscle transverse component" EXACT [MA:0002328]
synonym: "musculus transversus linguae" RELATED LATIN [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transverse lingual muscle" EXACT [FMA:46695]
synonym: "transverse muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus linguae" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus linguæ" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
xref: EMAPA:18281
xref: FMA:46695
xref: MA:0002328
xref: NCIT:C52706
xref: SCTID:244792003
xref: UMLS:C1708561 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component"}
xref: Wikipedia:Transverse_muscle_of_tongue
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/14/Musculustransversuslinguae.png xsd:anyURI

[Term]
id: UBERON:0008584
name: vertical muscle of tongue
namespace: uberon
def: "A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue]
synonym: "intrinsic tongue muscle vertical component" EXACT [MA:0002329]
synonym: "musculus verticalis linguae" RELATED LATIN [Wikipedia:Vertical_muscle_of_tongue]
synonym: "vertical lingual muscle" EXACT [FMA:46696]
synonym: "vertical muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguæ" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguæ muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
xref: EMAPA:18282
xref: FMA:46696
xref: MA:0002329
xref: NCIT:C52708
xref: SCTID:244793008
xref: UMLS:C1708562 {source="ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component"}
xref: Wikipedia:Vertical_muscle_of_tongue
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray1020.png xsd:anyURI

[Term]
id: UBERON:0008588
name: procerus
namespace: uberon
def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [Wikipedia:Procerus_muscle]
synonym: "depressor glabellae" RELATED LATIN [Wikipedia:Procerus_muscle]
synonym: "depressor glabellae" RELATED [Wikipedia:Procerus_muscle]
synonym: "musculus procerus glabellae" RELATED LATIN [Wikipedia:Procerus_muscle]
synonym: "procerus muscle" RELATED [Wikipedia:Procerus_muscle]
synonym: "pyramidalis nasi" RELATED [Wikipedia:Procerus_muscle]
synonym: "pyramidalis nasi" RELATED LATIN [Wikipedia:Procerus_muscle]
xref: FMA:46769
xref: SCTID:244731008
xref: Wikipedia:Procerus_muscle
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/7/76/Procerus.png xsd:anyURI

[Term]
id: UBERON:0008589
name: depressor septi nasi
namespace: uberon
def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor alae nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor alæ nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor septi" EXACT [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor septi nasi muscle" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "musculus depressor septi nasi" RELATED LATIN [Wikipedia:Depressor_septi_nasi_muscle]
xref: FMA:46777
xref: SCTID:244733006
xref: Wikipedia:Depressor_septi_nasi_muscle
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6c/Musculusdepressorseptinasi.PNG xsd:anyURI

[Term]
id: UBERON:0008603
name: helicis major
namespace: uberon
def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [Wikipedia:Helicis_major]
synonym: "helicis major muscle" RELATED []
synonym: "musculus helicis major" EXACT LATIN [Wikipedia:Helicis_major]
xref: FMA:48968
xref: SCTID:244764008
xref: Wikipedia:Helicis_major
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI

[Term]
id: UBERON:0008604
name: helicis minor
namespace: uberon
def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [Wikipedia:Helicis_minor]
synonym: "helicis minor muscle" RELATED []
synonym: "musculus helicis minor" RELATED LATIN [Wikipedia:Helicis_minor]
xref: FMA:48971
xref: SCTID:244765009
xref: Wikipedia:Helicis_minor
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI

[Term]
id: UBERON:0008605
name: tragicus muscle
namespace: uberon
def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [Wikipedia:Tragicus]
synonym: "musculus tragicus" RELATED LATIN [Wikipedia:Tragicus]
synonym: "tragicus" EXACT [FMA:48974]
synonym: "tragicus muscle" RELATED []
xref: FMA:48974
xref: SCTID:244766005
xref: Wikipedia:Tragicus
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI

[Term]
id: UBERON:0008606
name: antitragicus muscle
namespace: uberon
def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [Wikipedia:Antitragicus]
synonym: "antitragicus" EXACT [FMA:48980]
synonym: "antitragicus muscle" RELATED []
synonym: "musculus antitragicus" RELATED LATIN [Wikipedia:Antitragicus]
xref: FMA:48980
xref: SCTID:63899000
xref: Wikipedia:Antitragicus
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/58/Musculusantitragicus.png xsd:anyURI

[Term]
id: UBERON:0008607
name: transverse muscle of auricle
namespace: uberon
def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [Wikipedia:Transverse_muscle_of_auricle]
synonym: "musculus transversus auriculae" RELATED LATIN [Wikipedia:Transverse_muscle_of_auricle]
synonym: "transverse muscle of pinna" EXACT [FMA:48983]
synonym: "transversus auriculae" EXACT [Wikipedia:Transverse_muscle_of_auricle]
synonym: "transversus auricularis" EXACT [FMA:48983]
xref: FMA:48983
xref: SCTID:244767001
xref: Wikipedia:Transverse_muscle_of_auricle
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI

[Term]
id: UBERON:0008608
name: oblique muscle of auricle
namespace: uberon
def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [Wikipedia:Oblique_muscle_of_auricle]
synonym: "musculus obliquus auriculae" RELATED LATIN [Wikipedia:Oblique_muscle_of_auricle]
synonym: "oblique muscle of pinna" EXACT [FMA:48986]
synonym: "obliquus auriculae" EXACT [Wikipedia:Oblique_muscle_of_auricle]
synonym: "obliquus auricularis muscle" EXACT [FMA:48986]
synonym: "obliquus auriculæ" RELATED [Wikipedia:Oblique_muscle_of_auricle]
xref: FMA:48986
xref: SCTID:244768006
xref: Wikipedia:Oblique_muscle_of_auricle
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png xsd:anyURI

[Term]
id: UBERON:0008813
name: helicotrema
namespace: uberon
def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [Wikipedia:Helicotrema]
synonym: "apex of cochlea" BROAD [Wikipedia:Cochlea]
synonym: "cochlear apex" BROAD [Wikipedia:Cochlea]
synonym: "Scarpa's orifice" EXACT [FMA:61275]
xref: FMA:61275
xref: NCIT:C32723
xref: SCTID:279775003
xref: UMLS:C0229512 {source="ncithesaurus:Helicotrema"}
xref: Wikipedia:Helicotrema
relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png xsd:anyURI

[Term]
id: UBERON:0008831
name: inner spiral sulcus
namespace: uberon
def: "A concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html]
comment: part_of spiral sulcus in MA
synonym: "internal spiral sulcus" EXACT [MA:0001197]
synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html]
xref: EMAPA:35438
xref: FMA:77850
xref: MA:0001197
xref: Wikipedia:Sulcus_spiralis_internus
is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus

[Term]
id: UBERON:0008832
name: outer spiral sulcus
namespace: uberon
def: "A concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html]
comment: part_of spiral sulcus in MA
synonym: "external spiral sulcus" EXACT [MA:0001196]
synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html]
xref: EMAPA:35332
xref: FMA:77851
xref: MA:0001196
xref: Wikipedia:Sulcus_spiralis_externus
is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus

[Term]
id: UBERON:0008879
name: ligament of pinna
namespace: uberon
synonym: "auricular ligament" EXACT [MA:0001228]
synonym: "ligament of auricle" EXACT [FMA:61035]
synonym: "pinna ligament" EXACT [FMA:61035]
xref: EMAPA:37434 {source="MA:th"}
xref: FMA:61035
xref: MA:0001228
xref: SCTID:362548009
relationship: part_of UBERON:0001757 {source="MA"} ! pinna
property_value: IAO:0000116 "subclasses (anterior, superior, posterior) can be added on request" xsd:string

[Term]
id: UBERON:0008904
name: neuromast
namespace: uberon
def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements." [ZFIN:ZDB-PUB-961014-576]
subset: efo_slim
synonym: "lateral line neuromast" EXACT [ZFA:0000243]
synonym: "lateral line organ" BROAD [ZFA:0000243]
synonym: "neuromast organ" EXACT [PHENOSCAPE:wd]
synonym: "neuromasts" EXACT PLURAL [ZFA:0000243]
xref: AAO:0001004
xref: EFO:0003513
xref: TAO:0000243
xref: ZFA:0000243
is_a: UBERON:0035555 ! lateral line sense organ
relationship: part_of UBERON:0010202 ! lateral line
property_value: UBPROP:0000001 "Type of mechanoreceptive organ of the lateral line which are arranged in lines on the body surface. These organs are constituted by hair cells and supporting cells and it is located in the epidermis with its hair cells exposed to the surface. Absent in some caecilians. These receptors receive afferent and efferent innervations.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000001 "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000243", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000002 "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO"}
property_value: UBPROP:0000002 "relationship loss: subclass lateral line receptor (AAO:0010705)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001004", ontology="AAO"}

[Term]
id: UBERON:0008906
name: lateral line nerve
namespace: uberon
def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator]
synonym: "lateral line nerves" EXACT PLURAL [ZFA:0001479]
xref: AAO:0010077
xref: TAO:0001479
xref: ZFA:0001479
relationship: part_of UBERON:0002540 ! lateral line system
property_value: UBPROP:0000001 "Any of the sensory nerves that innervate mechano- and electroreceptors of the lateral line system. The lateral line nerves may be separated in two components, anterior and posterior, in relation to the position of its roots with respect to the otic capsule. These nerves develop from lateral line placodes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO", source="AAO:SIQ"}
property_value: UBPROP:0000002 "relationship loss: innervates lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"}
property_value: UBPROP:0000002 "relationship type change: part_of_proxy lateral line system (AAO:0000975) CHANGED TO: part_of lateral line system (UBERON:0002540)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010077", ontology="AAO"}

[Term]
id: UBERON:0008917
name: ampullary organ
namespace: uberon
def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd]
subset: organ_slim
synonym: "ampullary electroreceptor" EXACT []
synonym: "ampullary electroreceptor organ" EXACT [TAO:0002104]
synonym: "ampullary receptor" BROAD []
synonym: "electrosensory ampullary organ" EXACT []
xref: AAO:0001006
xref: TAO:0002104
is_a: UBERON:0035555 ! lateral line sense organ
relationship: part_of UBERON:0010202 ! lateral line
property_value: RO:0002161 NCBITaxon:7915
property_value: RO:0002161 NCBITaxon:7922
property_value: RO:0002175 NCBITaxon:7746
property_value: RO:0002175 NCBITaxon:7777
property_value: RO:0002175 NCBITaxon:7900
property_value: RO:0002175 NCBITaxon:7911
property_value: RO:0002175 NCBITaxon:8289
property_value: RO:0002175 NCBITaxon:8296
property_value: UBPROP:0000001 "An electroreceptor consisting of receptor cells sunk into the epidermis or located in an epidermal cavity opening to the surface through a duct and pore. It can detect weak electric currents generated by other animals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO", source="ZipcodeZoo:ampullary_organ"}
property_value: UBPROP:0000002 "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO"}
property_value: UBPROP:0000002 "relationship loss: subclass lateral line receptor organ (AAO:0001001)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0001006", ontology="AAO"}
property_value: UBPROP:0000008 "The presence of these organs varies greatly among anamniotes, but an out-group analysis of their distribution in adult anamniotes suggests that they were present in primitive vertebrates and retained in living lampreys, cartilaginous fishes, lobe-finned fishes and basal ray-finned fishes (bichirs, sturgeons and paddlefishes). Ampullary organs do not occur in gars and bowfins, two of the three groups of neopterygian fishes, nor are they found in most teleost fishes, but they do appear to have re-evolved at least twice (and more likely three or more times) in five groups of teleosts (Northcutt, 1997).[http://icb.oxfordjournals.org/content/42/4/743]" xsd:string

[Term]
id: UBERON:0008918
name: ampulla of Lorenzini
namespace: uberon
def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [Wikipedia:Ampullae_of_Lorenzini]
subset: organ_slim
synonym: "ampullae of Lorenzini" EXACT PLURAL [Wikipedia:Ampullae_of_Lorenzini]
xref: Wikipedia:Ampullae_of_Lorenzini
is_a: UBERON:0035555 ! lateral line sense organ
relationship: part_of UBERON:0002540 ! lateral line system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/8/88/Electroreceptors_in_a_sharks_head.svg xsd:anyURI
property_value: RO:0002161 NCBITaxon:32443 {source="Wikipedia"}
property_value: RO:0002161 NCBITaxon:32523
property_value: RO:0002175 NCBITaxon:119203

[Term]
id: UBERON:0008921
name: substratum of layer of retina
namespace: uberon
def: "." [http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html, UBERON:CL_meeting_20110725]
relationship: part_of UBERON:0000966 ! retina

[Term]
id: UBERON:0008922
name: sublaminar layer S1
namespace: uberon
def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000113
is_a: UBERON:0008927 ! sublaminar layers S1 or S2
is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5
is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3
is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4
is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2

[Term]
id: UBERON:0008923
name: sublaminar layer S2
namespace: uberon
def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000114
is_a: UBERON:0008927 ! sublaminar layers S1 or S2
is_a: UBERON:0008928 ! sublaminar layers S2 or S3
is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5
is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3
is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4
is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2
relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3

[Term]
id: UBERON:0008924
name: sublaminar layer S3
namespace: uberon
def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000115
is_a: UBERON:0008928 ! sublaminar layers S2 or S3
is_a: UBERON:0009731 ! sublaminar layers S3 or S4
is_a: UBERON:0009733 ! sublaminar layers S1 or S2 or S3
is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4
is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4
is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5
is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3

[Term]
id: UBERON:0008925
name: sublaminar layer S4
namespace: uberon
def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000116
is_a: UBERON:0008929 ! sublaminar layers S4 or S5
is_a: UBERON:0009731 ! sublaminar layers S3 or S4
is_a: UBERON:0009734 ! sublaminar layers S2 or S3 or S4
is_a: UBERON:0009735 ! sublaminar layers S1 or S3 or S4
is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5
is_a: UBERON:0009737 ! sublaminar layers S1 or S2 or S3 or S4
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5

[Term]
id: UBERON:0008926
name: sublaminar layer S5
namespace: uberon
def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm]
xref: CP:0000117
is_a: UBERON:0008929 ! sublaminar layers S4 or S5
is_a: UBERON:0009732 ! sublaminar layers S1 or S2 or S5
is_a: UBERON:0009736 ! sublaminar layers S3 or S4 or S5
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5

[Term]
id: UBERON:0008927
name: sublaminar layers S1 or S2
namespace: uberon
def: "One of sublaminar layers S1 or S2." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0000118
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0008928
name: sublaminar layers S2 or S3
namespace: uberon
def: "One of sublaminar layers S2 or S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0000119
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0008929
name: sublaminar layers S4 or S5
namespace: uberon
def: "One of sublaminar layers S4 or S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0000120
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0008959
name: auditory bulla
namespace: uberon
def: "A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla]
synonym: "auditory bullae" RELATED PLURAL []
synonym: "bulla" BROAD []
synonym: "bulla tympanica" RELATED LATIN [https://orcid.org/0000-0002-6601-2165]
synonym: "sigmoid process" NARROW []
synonym: "tympanic bulla" RELATED []
xref: EMAPA:37433 {source="MA:th"}
xref: NCIT:C112425
xref: Wikipedia:Auditory_bulla
relationship: part_of UBERON:0001690 ! ear
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/a/af/Toothed_whale_sound_production.png xsd:anyURI
property_value: UBPROP:0000008 "In extant primates, the structure is found in tarsiers, lemurs, and lorises[WP]. When present in marsupials, it usually forms the alisphenoid; in placentals variously constructed of ectotympanic, entotympanic, petrosal, or a combination of these and others" xsd:string {source="Rose"}
property_value: UBPROP:0000011 "may be formed from entotympanic and ectotympanic" xsd:string

[Term]
id: UBERON:0009016
name: ciliary stroma
namespace: uberon
synonym: "ocular ciliary stroma" EXACT []
synonym: "stroma of ciliary body" EXACT []
xref: EMAPA:35241
xref: FMA:312260
xref: MA:0001239
xref: SCTID:280868008
relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body

[Term]
id: UBERON:0009038
name: sulcus ampullaris
namespace: uberon
def: "The groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove]
subset: pheno_slim
synonym: "ampullary groove" EXACT [FMA:74584]
synonym: "ampullary sulcus" EXACT []
xref: FMA:74584
xref: MA:0002835
xref: SCTID:368954006
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla

[Term]
id: UBERON:0009053
name: dorsal nucleus of trapezoid body
namespace: uberon
synonym: "dorsal nucleus of trapezoid body" EXACT [BIRNLEX:2575]
synonym: "nucleus dorsalis corporis trapezoidei" EXACT LATIN []
xref: BIRNLEX:2575
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1282
xref: SCTID:369021001
xref: UMLS:C0228438 {source="BIRNLEX:2575"}
xref: UMLS:C1289450 {source="BIRNLEX:2575"}
is_a: UBERON:0007633 ! nucleus of trapezoid body
property_value: IAO:0000116 "merge with SOC? See https://github.com/obophenotype/uberon/issues/631#issuecomment-67754754" xsd:string

[Term]
id: UBERON:0009121
name: vomeronasal nerve
namespace: uberon
def: "Nerve carrying fibers from the vomeronasal organ epithelium to the accessory olfactory bulb." [AAO:DSM, http://orcid.org/0000-0002-6601-2165, ISBN:0471888893]
synonym: "accessory olfactory bulb vomeronasal nerve" RELATED [BAMS:vn]
xref: AAO:0010608
xref: BAMS:vn
xref: BAMS:von
xref: BTO:0001351
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1567
xref: MBA:949
xref: NLXANAT:1005018
relationship: part_of UBERON:0009954 ! vomeronasal system
property_value: UBPROP:0000001 "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010608", ontology="AAO", source="AAO:DSM"}
property_value: UBPROP:0000008 "In the human this disappears before birth" xsd:string

[Term]
id: UBERON:0009471
name: dorsum of tongue
namespace: uberon
def: "The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html]
synonym: "dorsal tongue" EXACT [FMA:54651]
synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html]
synonym: "tongue dorsum" EXACT [FMA:54651]
xref: FMA:54651
xref: NCIT:C32482
xref: SCTID:66938003
xref: UMLS:C0226952 {source="ncithesaurus:Dorsum_of_the_Tongue"}
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 {source="FMA"} ! tongue

[Term]
id: UBERON:0009477
name: associated mesenchyme of otic placode
namespace: uberon
def: "Mesenchyme that is part of a otic placode." [OBOL:automatic]
subset: emapa_ehdaa2
xref: EHDAA2:0001340
xref: EMAPA:16196
relationship: part_of UBERON:0003069 ! otic placode

[Term]
id: UBERON:0009506
name: mesenchyme of middle ear
namespace: uberon
def: "Mesenchyme that is part of a developing middle ear." [OBOL:automatic]
subset: emapa_ehdaa2
synonym: "middle ear associated mesenchyme" EXACT [EHDAA2:0001182]
synonym: "otic mesenchyme" BROAD []
xref: EHDAA2:0001182
xref: EMAPA:17001
relationship: part_of UBERON:0001756 ! middle ear
property_value: UBPROP:0000012 "Also 1st arch maxillary mesenchyme in EHDAA2" xsd:string {external_ontology="EHDAA2"}

[Term]
id: UBERON:0009647
name: tympanic membrane epithelium
namespace: uberon
def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)" [https://orcid.org/0000-0002-6601-2165, PMID:11237469]
synonym: "tympanic epithelium" EXACT [MA:0001224]
synonym: "tympanic membrane epithelial layer" EXACT []
xref: EMAPA:19064
xref: MA:0001224
xref: NCIT:C49308
xref: SCTID:70839004
xref: UMLS:C1711401 {source="ncithesaurus:Tympanic_Epithelium"}
is_a: UBERON:0010071 ! layer of tympanic membrane
is_a: UBERON:0015813 ! middle ear epithelium
relationship: part_of UBERON:0002364 ! tympanic membrane

[Term]
id: UBERON:0009648
name: eyelid subcutaneous connective tissue
namespace: uberon
def: "A eyelid connective tissue that is part of a hypodermis." [OBOL:automatic]
synonym: "superficial fascia of eyelid" RELATED [FMA:63975]
xref: EMAPA:37533 {source="MA:th"}
xref: FMA:63975
xref: MA:0001252
xref: NCIT:C49226
xref: UMLS:C1707991 {source="ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue"}
is_a: UBERON:0003581 ! eyelid connective tissue

[Term]
id: UBERON:0009671
name: nasal fin
namespace: uberon
def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308]
xref: EHDAA2:0004548
xref: FMA:295940
is_a: UBERON:0005384 ! nasal cavity epithelium
relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium

[Term]
id: UBERON:0009672
name: oronasal membrane
namespace: uberon
def: "The oronasal membrane separates the oral cavity and nasal cavity." [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html]
synonym: "bucconasal membrane" EXACT [EHDAA:7840]
xref: EHDAA2:0000188
xref: EHDAA:7840
xref: EHDAA:7984
xref: FMA:295942
relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium
property_value: IAO:0000116 "split into two?" xsd:string
property_value: UBPROP:0000008 "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" xsd:string

[Term]
id: UBERON:0009692
name: lumen of pharyngotympanic tube
namespace: uberon
def: "A organ cavity that is part of a pharyngotympanic tube." [OBOL:automatic]
synonym: "auditory tube lumen" EXACT [EHDAA2:0004118]
synonym: "lumen of auditory tube" EXACT [FMA:60079]
synonym: "lumen of eustachian tube" EXACT [FMA:60079]
synonym: "pharyngotympanic tube lumen" EXACT [FMA:60079]
xref: EHDAA2:0004118
xref: FMA:60079
relationship: part_of UBERON:0002393 ! pharyngotympanic tube
property_value: IAO:0000116 "Check relationships for conformance with AAO and XAO" xsd:string

[Term]
id: UBERON:0009716
name: cupular organ
namespace: uberon
def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [DOI:10.2108/zsj.27.842]
is_a: UBERON:0000020 ! sense organ
property_value: UBPROP:0000008 "possible homologues of neuromasts in the inner ear (Bone & Ryan, 1978; Wada et al 1998). In the tunicate cupular organ, the sensory cell is a primary neuron sending an axon to the CNS. The sensory cilium is within a deep indentation of the cell and is surrounded by a collar of short microvilli." xsd:string

[Term]
id: UBERON:0009717
name: coronal organ
namespace: uberon
def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [DOI:10.1002/jez.b.21013]
subset: organ_slim
xref: BSA:0000122
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0009731
name: sublaminar layers S3 or S4
namespace: uberon
def: "One of sublaminar layers S3 or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0001040
is_a: UBERON:0008921 ! substratum of layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009732
name: sublaminar layers S1 or S2 or S5
namespace: uberon
def: "One of sublaminar layers S1, S2, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0001041
is_a: UBERON:0008921 ! substratum of layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009733
name: sublaminar layers S1 or S2 or S3
namespace: uberon
def: "One of sublaminar layers S1, S2, or S3." [GOC:plr, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0001042
is_a: UBERON:0008921 ! substratum of layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009734
name: sublaminar layers S2 or S3 or S4
namespace: uberon
def: "One of sublaminar layers S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0001043
is_a: UBERON:0008921 ! substratum of layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009735
name: sublaminar layers S1 or S3 or S4
namespace: uberon
def: "One of sublaminar layers S1, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0001044
is_a: UBERON:0008921 ! substratum of layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009736
name: sublaminar layers S3 or S4 or S5
namespace: uberon
def: "One of sublaminar layers S3, S4, or S5." [GOC:plr, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0001045
is_a: UBERON:0008921 ! substratum of layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009737
name: sublaminar layers S1 or S2 or S3 or S4
namespace: uberon
def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31]
xref: CP:0001046
is_a: UBERON:0008921 ! substratum of layer of retina
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009738
name: border of sublaminar layers S1 and S2
namespace: uberon
def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165]
xref: CP:0001038
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009739
name: border of sublaminar layers S3 and S4
namespace: uberon
def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, https://github.com/obophenotype/uberon/issues/31, https://orcid.org/0000-0002-6601-2165]
xref: CP:0001039
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009740
name: border between sublaminar layers
namespace: uberon
def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [https://orcid.org/0000-0002-6601-2165]
relationship: part_of UBERON:0000966 ! retina

[Term]
id: UBERON:0009851
name: border of sublaminar layers S4 and S5
namespace: uberon
def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31]
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009852
name: border of sublaminar layers S2 and S3
namespace: uberon
def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm, https://github.com/obophenotype/uberon/issues/31]
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan

[Term]
id: UBERON:0009892
name: ascidian anterior sensory vesicle
namespace: uberon
xref: ANISEED:777309
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0009893
name: ascidian ocellus
namespace: uberon
xref: ANISEED:874489
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0009892 ! ascidian anterior sensory vesicle

[Term]
id: UBERON:0009954
name: vomeronasal system
namespace: uberon
def: "A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants" [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0001032 ! sensory system
relationship: part_of UBERON:0005725 ! olfactory system
property_value: IAO:0000116 "check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES]" xsd:string

[Term]
id: UBERON:0009956
name: corpuscle of de Quatrefage
namespace: uberon
def: "A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve." [PMID:11523831]
synonym: "organ of de Quatrefage" EXACT []
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0010020
name: tubotympanic recess epithelium
namespace: uberon
def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [ISBN:0124020607, VHOG:0001297]
synonym: "tubotympanic recess" RELATED [VHOG:0001297]
xref: EHDAA2:0004115
xref: EHDAA:6772
xref: EMAPA:17002
xref: FMA:312393
xref: MA:0001218
xref: NCIT:C34318
xref: SCTID:361516008
xref: UMLS:C1284046 {source="ncithesaurus:Tubotympanic_Recess"}
xref: VHOG:0001297
is_a: UBERON:0015813 ! middle ear epithelium
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
property_value: UBPROP:0000003 "The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001297", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.417", source="http://bgee.unil.ch/"}

[Term]
id: UBERON:0010032
name: anterior part of tongue
namespace: uberon
def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [Wikipedia:Anterior_tongue]
synonym: "anterior 2/3 of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "anterior 2/3 of tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "anterior two thirds of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "apex linguae" RELATED [Wikipedia:Anterior_tongue]
synonym: "apex of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "buccal part of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "front of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "oral part of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "pars anterior dorsi linguae" RELATED LATIN [Wikipedia:Anterior_tongue]
xref: EMAPA:37437 {source="MA:th"}
xref: FMA:229084
xref: NCIT:C32130
xref: UMLS:C0226946 {source="ncithesaurus:Apex_of_the_Tongue"}
xref: Wikipedia:Anterior_tongue
relationship: part_of UBERON:0001723 ! tongue
property_value: depicted:by Illu04:tongue.jpg xsd:anyURI
property_value: UBPROP:0000011 "The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue" xsd:string
property_value: UBPROP:0000012 "check NCIT" xsd:string {external_ontology="NCIT"}

[Term]
id: UBERON:0010033
name: posterior part of tongue
namespace: uberon
def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)" [Wikipedia:Posterior_tongue]
synonym: "base of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "base of tongue" EXACT [Wikipedia:Posterior_tongue]
synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645]
synonym: "pars posterior dorsi linguae" EXACT LATIN [Wikipedia:Posterior_tongue]
synonym: "pars posterior linguae" EXACT LATIN [FMA:TA]
synonym: "pars postsulcalis (dorsum linguae)" EXACT [FMA:54645]
synonym: "pharyngeal part of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "pharyngeal part of tongue" EXACT [FMA:54645]
synonym: "pharyngeal portion of dorsum of tongue" EXACT [FMA:54645]
synonym: "posterior 1/3 of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "posterior part of dorsum of tongue" EXACT [FMA:54645]
synonym: "posterior third of tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "postsulcal part of dorsum of tongue" EXACT [FMA:54645]
synonym: "radix linguae" RELATED [Wikipedia:Posterior_tongue]
xref: EMAPA:37438 {source="MA:th"}
xref: FMA:54645
xref: MA:0003031
xref: NCIT:C12228
xref: SCTID:362094001
xref: UMLS:C0226958 {source="ncithesaurus:Base_of_the_Tongue"}
xref: Wikipedia:Posterior_tongue
relationship: part_of UBERON:0009471 {source="FMA"} ! dorsum of tongue
property_value: depicted:by Illu04:tongue.jpg xsd:anyURI

[Term]
id: UBERON:0010052
name: mucosa of dorsum of tongue
namespace: uberon
def: "A mucosa that is part of a dorsum of tongue." [OBOL:automatic]
synonym: "mucosa of dorsal surface of tongue" EXACT []
xref: FMA:74871
xref: SCTID:245835003
is_a: UBERON:0005020 ! mucosa of tongue
relationship: part_of UBERON:0009471 ! dorsum of tongue
property_value: IAO:0000116 "check surface terms" xsd:string
property_value: UBPROP:0000011 "develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN:1607950324" xsd:string

[Term]
id: UBERON:0010054
name: malleus cartilage element
namespace: uberon
def: "A malleus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic]
xref: EMAPA:18229
is_a: UBERON:0015018 ! malleus endochondral element
is_a: UBERON:0035131 ! auditory ossicle cartilage element

[Term]
id: UBERON:0010055
name: stapes cartilage element
namespace: uberon
def: "A stapes endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic]
xref: EMAPA:18230
is_a: UBERON:0015016 ! stapes endochondral element
is_a: UBERON:0035131 ! auditory ossicle cartilage element
relationship: part_of UBERON:0001686 ! auditory ossicle bone
property_value: IAO:0000116 "TODO - check relationship to Recihert's" xsd:string
property_value: UBPROP:0000008 "The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks." xsd:string

[Term]
id: UBERON:0010062
name: pharyngotympanic tube epithelium
namespace: uberon
synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117]
synonym: "eustachian tube epithelium" EXACT [https://orcid.org/0000-0002-6601-2165]
xref: EHDAA2:0004117
xref: EMAPA:32801
xref: FMA:285217
xref: MA:0003142
is_a: UBERON:0015813 ! middle ear epithelium
relationship: part_of UBERON:0002393 {source="cjm"} ! pharyngotympanic tube

[Term]
id: UBERON:0010063
name: tympanic cavity epithelium
namespace: uberon
xref: EHDAA2:0004116
is_a: UBERON:0015813 ! middle ear epithelium
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear

[Term]
id: UBERON:0010065
name: auditory meatus epithelium
namespace: uberon
xref: EHDAA2:0004114
is_a: UBERON:0015814 ! outer ear epithelium
relationship: part_of UBERON:0001691 {source="EHDAA2"} ! external ear

[Term]
id: UBERON:0010069
name: outer epithelial layer of tympanic membrane
namespace: uberon
def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [https://orcid.org/0000-0002-6601-2165, PMID:11237469]
synonym: "cuticular layer of tympanic membrane" EXACT [FMA:56819]
synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819]
synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819]
synonym: "outer layer of tympanic membrane" EXACT []
synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165]
xref: FMA:56819
xref: SCTID:39725007
is_a: UBERON:0009647 ! tympanic membrane epithelium
is_a: UBERON:0015814 ! outer ear epithelium
relationship: part_of UBERON:0001352 ! external acoustic meatus

[Term]
id: UBERON:0010070
name: intermediate layer of tympanic membrane
namespace: uberon
def: "The intermediate fibrous layer of the tympanic membrane." [https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376, PMID:11237469]
synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830]
synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830]
synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830]
synonym: "intermediate fibrous layer of tympanic membrane" EXACT [FMA:56830]
synonym: "tympanic endothelium" EXACT [MA:0001223]
xref: EMAPA:19063
xref: FMA:56830
xref: MA:0001223
xref: SCTID:44692008
is_a: UBERON:0010071 {source="FMA"} ! layer of tympanic membrane
property_value: UBPROP:0000012 "check MA" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0010071
name: layer of tympanic membrane
namespace: uberon
subset: grouping_class
synonym: "tympanic membrane layer" EXACT [FMA:56732]
xref: FMA:56732
relationship: part_of UBERON:0002364 ! tympanic membrane
property_value: UBPROP:0000008 "In mammals, this class groups together the two epithelial layers plus the intermediate fibrous layer" xsd:string

[Term]
id: UBERON:0010078
name: optic choroid vascular plexus
namespace: uberon
alt_id: ZFA:0005228
synonym: "capillary lamina of choroid" RELATED [XAO:0004176]
synonym: "choriocapillaris" RELATED [XAO:0004176]
synonym: "choroid vascular plexus" RELATED []
synonym: "choroid vasculature" RELATED [ZFA:0005094]
synonym: "choroidal vascular plexus" RELATED [TAO:0005094]
synonym: "CVP" EXACT ABBREVIATION [ZFA:0005094]
synonym: "optic choroid vascular plexus" RELATED [XAO:0004176]
xref: TAO:0005094
xref: XAO:0004176
xref: ZFA:0005094
is_a: UBERON:0002203 {source="ZFA"} ! vasculature of eye
relationship: part_of UBERON:0001776 {source="ZFA"} ! optic choroid
property_value: IAO:0000116 "Consider merging with capillary layer. Consider choriocapillaris complex" xsd:string
property_value: UBPROP:0000001 "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruchs's membrane.[XAO:0004176]." xsd:string {source="XAO:0004176"}
property_value: UBPROP:0000001 "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string {source="ZFA:0005094"}
property_value: UBPROP:0000008 "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string {source="PMID:14738502"}

[Term]
id: UBERON:0010135
name: sensory circumventricular organ
namespace: uberon
def: "A circumventricular organ that is capable of monitoring the levels of substances to the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
synonym: "humerosensory circumventricular organ" RELATED []
synonym: "humerosensory system" RELATED PLURAL [NeuroNames:2856]
synonym: "humerosensory system organ" RELATED []
synonym: "sensitive circumventricular organs" RELATED PLURAL [NeuroNames:2856]
synonym: "sensitive organs" RELATED PLURAL [NeuroNames:2856]
synonym: "sensory circumventricular organs" RELATED [NeuroNames:2856]
synonym: "sensory CVOs" RELATED PLURAL [NeuroNames:2856]
xref: EMAPA:37741 {source="MA:th"}
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2856
xref: MA:0002944
relationship: part_of UBERON:0001032 ! sensory system

[Term]
id: UBERON:0010202
name: lateral line
namespace: uberon
def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [Wikipedia:Lateral_line, ZFA:0001469]
synonym: "lateral lines" EXACT PLURAL [ZFA:0001469]
xref: AAO:0011128
xref: TAO:0001469
xref: Wikipedia:Lateral_line
xref: XAO:0004002
xref: ZFA:0001469
relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system

[Term]
id: UBERON:0010207
name: nictitating membrane
namespace: uberon
def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [MESH:A13.660, Wikipedia:Nictitating_membrane]
subset: pheno_slim
synonym: "haw" RELATED [Wikipedia:Nictitating_membrane]
synonym: "membrana nictitans" EXACT LATIN [Wikipedia:Nictitating_membrane]
synonym: "nictitans" EXACT [http://tolweb.org/Amniota]
synonym: "palperbra tertia" EXACT LATIN [PMID:7559104]
synonym: "third eyelid" EXACT [MESH:A13.660]
xref: MESH:D009541
xref: NCIT:C77657
xref: SCTID:113326005
xref: UMLS:C0028058 {source="ncithesaurus:Nictitating_Membrane"}
xref: Wikipedia:File\:Chickenblinking.jpg
xref: Wikipedia:Nictitating_membrane
is_a: UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001811 ! conjunctiva
property_value: IAO:0000116 "We exclude the shark structure for this via a taxon constraint." xsd:string
property_value: RO:0002161 NCBITaxon:376913 {source="Wikipedia"}
property_value: RO:0002161 NCBITaxon:8570
property_value: RO:0002175 NCBITaxon:261739
property_value: RO:0002175 NCBITaxon:8292
property_value: RO:0002175 NCBITaxon:8782
property_value: RO:0002175 NCBITaxon:9632
property_value: RO:0002175 NCBITaxon:9709
property_value: RO:0002175 NCBITaxon:9816
property_value: RO:0002175 NCBITaxon:9835
property_value: UBPROP:0000008 "in mice, the nictitating membrane is very small and composed of a very thin core of cartilage covered by loose connective tissue" xsd:string
property_value: UBPROP:0000008 "In most primate species, a plica semilunaris is present, although fully developed nictitating membranes can be found in lemurs and lorisoid primates[Wikipedia:Nictitating_membrane]" xsd:string
property_value: UBPROP:0000008 "Some reptiles, birds, and sharks have full nictitating membranes; in many mammals, a small, vestigial portion of the membrane remains in the corner of the eye. Some mammals, such as camels, polar bears, seals, and aardvarks, have full nictitating membranes. fully developed nictitating membranes can be found in lemurs and lorisoid primates." xsd:string {source="WP"}
property_value: UBPROP:0000008 "The Calabar angwantibo (Arctocebus calabarensis, a lorisoid) is the only primate to have a functioning nictitating membrane[Wikipedia:Calabar_angwantibo]" xsd:string

[Term]
id: UBERON:0010209
name: plica semilunaris of conjunctiva
namespace: uberon
def: "The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted." [Wikipedia:Plica_semilunaris_of_conjunctiva]
synonym: "plica semilunaris (conjunctiva)" EXACT [FMA:59045]
synonym: "plica semilunaris conjunctivae" RELATED LATIN [Wikipedia:Plica_semilunaris_of_conjunctiva]
synonym: "plica semilunaris of the conjunctiva" RELATED [Wikipedia:Plica_semilunaris_of_conjunctiva]
synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045]
xref: FMA:59045
xref: SCTID:280686009
xref: Wikipedia:Plica_semilunaris_of_conjunctiva
relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png xsd:anyURI
property_value: UBPROP:0000008 "It is the vestigial remnant of the nictitating membrane" xsd:string

[Term]
id: UBERON:0010223
name: left pupil
namespace: uberon
def: "A pupil that is part of a left eye." [OBOL:automatic]
synonym: "pupil of left eye" EXACT [FMA:58254]
xref: FMA:58254
xref: SCTID:368597006
is_a: UBERON:0001771 ! pupil
relationship: part_of UBERON:0004548 ! left eye

[Term]
id: UBERON:0010224
name: right pupil
namespace: uberon
def: "A pupil that is part of a right eye." [OBOL:automatic]
synonym: "pupil of right eye" EXACT [FMA:58253]
xref: FMA:58253
xref: SCTID:368575009
is_a: UBERON:0001771 ! pupil
relationship: part_of UBERON:0004549 ! right eye

[Term]
id: UBERON:0010230
name: eyeball of camera-type eye
namespace: uberon
def: "The core globe-shaped component of the camera-type eye." [UBERON:cjm]
subset: pheno_slim
synonym: "bulbus oculi" EXACT []
synonym: "eye" RELATED INCONSISTENT []
synonym: "eye globe" EXACT [VHOG:0001616]
synonym: "eyeball" EXACT [FMA:12513]
synonym: "globe" RELATED [HP:0100886, MIAA:0000283]
xref: FMA:12513
xref: MIAA:0000283
xref: SCTID:244486005
xref: VHOG:0001616
xref: Wikipedia:Globe_(human_eye)
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
property_value: IAO:0000232 "See notes for camera-type eye" xsd:string
property_value: UBPROP:0000202 FMA:264089

[Term]
id: UBERON:0010244
name: choroid tapetum lucidum
namespace: uberon
def: "A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium" [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification]
synonym: "choroidal tapetum lucidum" EXACT []
synonym: "tapetum choroideae" EXACT [BTO:0001828]
xref: BTO:0001828
xref: SCTID:3034006
xref: Wikipedia:Tapetum_lucidum#Classification
is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye
relationship: part_of UBERON:0001776 ! optic choroid
property_value: UBPROP:0000012 "we make the assumption that the BTO class belongs here rather than with the parent; the other type is the retinal type" xsd:string {external_ontology="BTO"}

[Term]
id: UBERON:0010245
name: retinal tapetum lucidum
namespace: uberon
def: "A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium" [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification]
xref: Wikipedia:Tapetum_lucidum#Classification
is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye
relationship: part_of UBERON:0000966 ! retina
property_value: RO:0002175 NCBITaxon:30559 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002175 NCBITaxon:32443 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002175 NCBITaxon:8493 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002175 NCBITaxon:9263 {editor="cjm", source="PMID:14738502"}
property_value: UBPROP:0000008 "as seen in teleosts, crocodiles, marsupials and fruit bats" xsd:string {source="WP"}
property_value: UBPROP:0000008 "In crocodilians, a semicircular area of the retinal epithelium in the superior fundus shows a fair sulfur yellow coloration and is specialized as a tapetum lucidum." xsd:string {source="PMID:14738502", taxon="NCBITaxon:8493"}
property_value: UBPROP:0000008 "In the tapetal area, no melanosomes are formed indicating a nonocclusible tapetum in the Caiman sclerops." xsd:string {source="PMID:14738502", taxon="NCBITaxon:8499"}
property_value: UBPROP:0000008 "Retinal tapeta lucida are common in fish and some reptiles, but rarely occur in mammals. In most of these species the retinal tapetum can be classified as either a lipid (in some teleosts, mammals) or guanine type (in some teleosts, reptiles). Another differentiation can be made among the retinal tapeta lucida based on whether the tapetum is occlusible (found in most of teleosts), or nonocclusible (or static) (found in mammals)" xsd:string {source="PMID:14738502"}
property_value: UBPROP:0000008 "the tapetum lucidum is an integral part of the pigment epithelium in primitive teleosts (lying in the pro- cesses of the pigmented epithelial cells). It can vary in chemical nature." xsd:string {source="PMID:14738502", taxon="NCBITaxon:32443"}

[Term]
id: UBERON:0010246
name: choroidal guanine tapetum
namespace: uberon
def: "A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine" [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification]
xref: Wikipedia:Tapetum_lucidum#Classification
is_a: UBERON:0010244 ! choroid tapetum lucidum
property_value: RO:0002175 NCBITaxon:7778
property_value: RO:0002175 NCBITaxon:7864
property_value: UBPROP:0000008 "A choroidal tapetum of reflecting cells lying immediately outside the choriocapillaris is formed in a few primitive teleosts." xsd:string {source="PMID:14738502", taxon="NCBITaxon:32443"}
property_value: UBPROP:0000008 "elasmobranchii (skates, rays, and sharks) and chimaeras" xsd:string {source="WP"}
property_value: UBPROP:0000008 "The elasmobranch tapetum in Squalus and Scyliorhinus con- sists of sheets of 12-13 superposed guanine crystals in the choroid." xsd:string {source="PMID:14738502", taxon="NCBITaxon:7778"}

[Term]
id: UBERON:0010247
name: choroidal tapetum cellulosum
namespace: uberon
def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup" [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification]
comment: The choroidal stroma adjacent to the tapetum lucidum contains numerous small blood vessels that penetrate the tapetal layer to form a single-layered capillary network, known as the choriocapillaris, on the surface of the tapetum. The tapetum cellulosum is thus interposed between the large branching vessels in the choroid and the single layer of the choriocapillaris beneath the retinal epithelium[PMID:14738502]
synonym: "choroid tapetum cellulosum" EXACT []
xref: Wikipedia:Tapetum_lucidum#Classification
is_a: UBERON:0010244 ! choroid tapetum lucidum
property_value: RO:0002175 NCBITaxon:33554 {editor="cjm", notes="most carnivores", source="PMID:14738502"}
property_value: RO:0002175 NCBITaxon:9721 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002175 NCBITaxon:9989 {editor="cjm", source="PMID:14738502", taxon="spotted cavy"}

[Term]
id: UBERON:0010248
name: choroidal tapetum fibrosum
namespace: uberon
def: "A choroid tapetum lucidum that is an array of extracellular fibers." [https://orcid.org/0000-0002-6601-2165, PMID:14738502, Wikipedia:Tapetum_lucidum#Classification]
synonym: "fibrous tapetum" RELATED [NCBITaxon:9845, PMID:14738502]
xref: Wikipedia:Tapetum_lucidum#Classification
is_a: UBERON:0010244 ! choroid tapetum lucidum
property_value: RO:0002175 NCBITaxon:9788 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002175 NCBITaxon:9845 {editor="cjm", source="PMID:14738502"}
property_value: UBPROP:0000008 "cows, sheep, goats and horses" xsd:string {source="WP"}

[Term]
id: UBERON:0010271
name: musculus retractor bulbi
namespace: uberon
def: "Cranial nerve VI innervated; ventral and posterior to the eye." [AAO:0010122]
synonym: "M. retractor bulbi" EXACT []
synonym: "retractor bulbi" EXACT []
synonym: "retractor bulbi muscle" EXACT []
xref: AAO:0010122
is_a: UBERON:0001601 {source="cjm"} ! extra-ocular muscle
property_value: IAO:0000116 "TODO - add innervation relationships" xsd:string
property_value: RO:0002161 NCBITaxon:9606 {source="Wikipedia"}
property_value: RO:0002175 NCBITaxon:40674
property_value: UBPROP:0000008 "In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection" xsd:string {source="wiki/Abducens_nerve"}

[Term]
id: UBERON:0010284
name: lacrimal punctum
namespace: uberon
def: "A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi." [Wikipedia:Lacrimal_punctum]
subset: pheno_slim
synonym: "lacrimal point" RELATED [Wikipedia:Lacrimal_punctum]
synonym: "lacrimal puncta" RELATED PLURAL [Wikipedia:Lacrimal_punctum]
synonym: "puncta lacrimalia" RELATED LATIN [Wikipedia:Lacrimal_punctum]
xref: FMA:59365
xref: SCTID:263344003
xref: Wikipedia:Lacrimal_punctum
relationship: part_of UBERON:0001850 ! lacrimal drainage system
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/5/53/Gray895.png xsd:anyURI
property_value: UBPROP:0000009 "collect tears produced by the lacrimal glands" xsd:string

[Term]
id: UBERON:0010289
name: scleral cartilage
namespace: uberon
def: "Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye." [http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage]
synonym: "scleral cartilage element" EXACT [PMID:17051547]
synonym: "scleral cartilaginous cup" NARROW SENSU [PMID:17051547]
synonym: "sclerotic cartilage" EXACT [ZFA:0001509]
synonym: "sclerotic cartilages" RELATED PLURAL [ZFA:0001509]
xref: TAO:0001509
xref: ZFA:0001509
is_a: UBERON:0010296 ! scleral skeletal element
relationship: part_of UBERON:0001773 {source="cjm"} ! sclera
property_value: IAO:0000116 "consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage" xsd:string
property_value: IAO:0000116 "relationship to sclera - overlaps?" xsd:string
property_value: RO:0002161 NCBITaxon:32525 {source="PMID:17051547 - but present in monotremes"}
property_value: UBPROP:0000001 "Bilaterally paired thin continuous band of cartilage that sagittally encircles the eye.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001509", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000008 "May be calcified in chondrichthyans. Tetrapods without this element (e.g., snakes and mammals) have a collagenous sclera. May not be homologous - see http://www.ncbi.nlm.nih.gov/pubmed/17051547. cup-shaped in birds. Present in monotremes." xsd:string

[Term]
id: UBERON:0010290
name: scleral ossicle
namespace: uberon
def: "A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage." [PMID:17051547]
synonym: "scleral ossicle" EXACT [PMID:17051547]
synonym: "sclerotic bone" EXACT [ZFA:0001411]
synonym: "sclerotic ossicle" EXACT []
xref: SCTID:45632000
is_a: UBERON:0010296 ! scleral skeletal element
property_value: RO:0002161 NCBITaxon:7777 {source="PMID:17051547 Walls 1942"}
property_value: RO:0002161 NCBITaxon:7878 {source="PMID:17051547 Kemp 1999"}
property_value: UBPROP:0000008 "The distribution of scleral ossicles and scleral cartilage among verte- brate taxa is not the same. Some taxa (e.g., birds) have both elements; some only have one element (e.g., crocodiles only have a scleral cartilage); while others (e.g., snakes) have neither element (Walls, 1942) number of ossicles making up the sclerotic ring as well as the shape of both the individual plates and the sclerotic ring is variable among tetrapod taxa.... It is therefore extremely likely that scleral skeletal elements (ossicles and cartilage) of all rep- tiles (including birds) are homologous (but cannot be assumed for reptiles and teleosts)" xsd:string
property_value: UBPROP:0000009 "The function of these elements is to support the eye from within the sclera; scleral ossicles play an additional important role during accommodation in terrestrial vertebrates (Lemmrich, 1931; Walls, 1942; King and McLelland, 1984)." xsd:string

[Term]
id: UBERON:0010291
name: layer of sclera
namespace: uberon
def: "." [Wikipedia:Sclera#Histology]
xref: Wikipedia:Sclera#Histology
relationship: part_of UBERON:0001773 {source="cjm"} ! sclera

[Term]
id: UBERON:0010292
name: episcleral layer of eyeball
namespace: uberon
def: "The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels." [Wikipedia:Episcleral_layer]
synonym: "episclera" EXACT [FMA:58362]
synonym: "episcleral layer" EXACT [FMA:58362]
synonym: "lamina episcleralis" EXACT LATIN [Wikipedia:Episcleral_layer]
xref: FMA:58362
xref: NCIT:C12989
xref: SCTID:368850003
xref: UMLS:C0229109 {source="ncithesaurus:Episclera"}
xref: Wikipedia:Episcleral_layer
is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera

[Term]
id: UBERON:0010293
name: suprachoroid lamina
namespace: uberon
def: "On the external surface of the optic choroid is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellae-each lamella consisting of a network of fine elastic fibers among which are branched pigment cells." [Wikipedia:Suprachoroid_lamina]
synonym: "fusca sclerae" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "lamina fusca of sclera" RELATED [FMA:58368]
synonym: "lamina fusca sclerae" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "lamina fusca sclerae" RELATED LATIN [FMA:TA]
synonym: "lamina fusca scletae" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "lamina suprachorioidea" EXACT LATIN [Wikipedia:Suprachoroid_lamina]
synonym: "lamina suprachorioidea" RELATED LATIN [Wikipedia:Suprachoroid_lamina]
synonym: "lamina suprachoroidea" EXACT LATIN [Wikipedia:Suprachoroid_lamina]
synonym: "suprachoroid lamina of sclera" RELATED [FMA:58368]
xref: FMA:58368
xref: SCTID:280607003
xref: Wikipedia:Suprachoroid_lamina
relationship: part_of UBERON:0013399 ! blood vessel layer of choroid
property_value: UBPROP:0000010 "The spaces between the lamellae are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted." xsd:string
property_value: UBPROP:0000012 "FMA treats this as part of the sclera" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0010294
name: scleral endothelium
namespace: uberon
def: "An endothelium that is part of a sclera." [OBOL:automatic]
is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001773 ! sclera

[Term]
id: UBERON:0010295
name: substantia propria of sclera
namespace: uberon
def: "A stroma that is part of a sclera." [OBOL:automatic]
synonym: "scleral stroma" EXACT [FMA:58365]
synonym: "stroma of sclera" EXACT [FMA:58365]
synonym: "subsantia propria" BROAD []
synonym: "subsantia propria sclerae" EXACT [FMA:58365]
synonym: "substantia propria sclerae" EXACT LATIN [FMA:58365, FMA:TA]
xref: FMA:58365
xref: NCIT:C33652
xref: SCTID:368851004
xref: UMLS:C1704397 {source="ncithesaurus:Substantia_Propria"}
is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera
relationship: part_of UBERON:0001773 ! sclera

[Term]
id: UBERON:0010296
name: scleral skeletal element
namespace: uberon
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: IAO:0000232 "An eye adnexal structure, but not necessarily part of the eyeball" xsd:string
property_value: RO:0002161 NCBITaxon:40674 {source="PMID:17051547"}

[Term]
id: UBERON:0010297
name: endochondral scleral ossicle
namespace: uberon
synonym: "sclerotic bones" RELATED PLURAL [ZFA:0001411]
xref: TAO:0001411
xref: ZFA:0001411
is_a: UBERON:0010290 ! scleral ossicle
property_value: RO:0002161 NCBITaxon:32523
property_value: UBPROP:0000001 "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001411", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000008 "The scleral ossicles [of teleosts] are reported to form indirectly by endochondral (Hall and Miyake, 1992) or by perichondral ossification (Patterson, 1977) from a cartilage element that is also present in the sclera. This is unlike the scleral ossicles of reptiles, which develop directly from ectomesenchyme (i.e., intramembranous ossification) and independently from the scleral cartilage" xsd:string {source="PMID:17051547"}

[Term]
id: UBERON:0010298
name: intramembranous scleral ossicle
namespace: uberon
comment: are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991)
is_a: UBERON:0010290 ! scleral ossicle
property_value: RO:0002161 NCBITaxon:32443
property_value: UBPROP:0000011 "The scleral ossicles [in reptiles]" xsd:string

[Term]
id: UBERON:0010305
name: subdivision of conjunctiva
namespace: uberon
def: "One of the three major regions of the conjunctiva." [Wikipedia:Conjunctiva#Gross_anatomy]
subset: grouping_class
synonym: "conjunctiva region" EXACT []
synonym: "region of conjunctiva" EXACT [FMA:59023]
xref: FMA:59023
xref: SCTID:29445007
xref: Wikipedia:Conjunctiva#Gross_anatomy
relationship: part_of UBERON:0001811 ! conjunctiva

[Term]
id: UBERON:0010306
name: bulbar conjunctiva
namespace: uberon
def: "The conjunctiva covering the anterior surface of the sclera and the surface epithelium of the cornea." [MP:0013402]
comment: covers the eyeball, over the sclera. This region of the conjunctiva is tightly bound to the underlying sclera by Tenon's capsule and moves with the eyeball movements.
subset: pheno_slim
synonym: "ocular conjunctiva" EXACT [Wikipedia:Conjunctiva]
xref: FMA:59024
xref: NCIT:C12902
xref: SCTID:264509009
xref: UMLS:C0229275 {source="ncithesaurus:Bulbar_Conjunctiva"}
is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva

[Term]
id: UBERON:0010307
name: conjunctival fornix
namespace: uberon
def: "The space formed by the junction of the bulbar and palpebral portions of the conjunctiva, that of the upper lid being the superior conjunctival fornix (fornix conjunctivae superior) and that of the lower lid, the inferior conjunctival fornix (fornix conjunctivae inferior); the fornix is loose and flexible, allowing the free movement of the lids and eyeball." [MGI:anna]
subset: pheno_slim
synonym: "conjunctiva fornix" EXACT [MGI:anna]
synonym: "forniceal conjunctiva" EXACT [MGI:anna]
synonym: "fornix conjunctiva" EXACT LATIN [Wikipedia:Conjunctiva]
xref: EMAPA:37834 {source="MA:th"}
xref: FMA:59016
xref: SCTID:276831007
is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva
property_value: UBPROP:0000009 "It is loose and flexible, allowing the free movement of the lids and eyeball" xsd:string

[Term]
id: UBERON:0010308
name: os opticus
namespace: uberon
def: "Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue." [PMID:16496288]
synonym: "Gemminger's ossicle" EXACT [PMID:16496288]
synonym: "os nervi optici" EXACT [PMID:16496288]
is_a: UBERON:0010298 ! intramembranous scleral ossicle
property_value: UBPROP:0000008 "At present, it has been documented in 219 species from 35 families, including perching birds, woodpeckers, hummingbirds, toucans, kingfishers, and falcons (Tiemeier, 1950). Morphologically, this element varies in shape from a complete encircling element in some woodpeckers (e.g., Melanerpes eryth- rocephalus) to an abbreviated arc in Gallus" xsd:string

[Term]
id: UBERON:0010309
name: palpebral bone
namespace: uberon
def: "An ossified element investing the upper eyelid." [PMID:16496288, Wikipedia:Palpebral_(bone)]
synonym: "palpebral" BROAD []
xref: Wikipedia:Palpebral_(bone)
relationship: part_of UBERON:0001712 ! upper eyelid
property_value: IAO:0000116 "PMID:16496288 says 'invests' the eyelid, is this consistent across taxa?" xsd:string
property_value: UBPROP:0000008 "The most extreme development of the palpebral is found in the armored dino- saur Euoplocephalus tutus, where the bone forms a quarter-sphere and adducts to completely occlude the or- bit (Coombs, 1972; Vickaryous and Russell, 2003). Notwithstanding the superficially similar position, palpe- brals and tarsal plates differ both anatomically and developmentally and are not considered homologous (Gauthier et al., 1988)" xsd:string

[Term]
id: UBERON:0010310
name: nictitating membrane lamina
namespace: uberon
def: "thin cartilage element that stiffens the nictitating membrane." [PMID:16496288]
comment: Morphology notes: Generally, the cartilage consists of a long narrow appendix which is followed by a variable crossbar[PMID:11325064]
synonym: "cartilago intercipiens" EXACT [PMID:16496288]
synonym: "nictitating membrane cartilage" EXACT [PMID:11325064]
relationship: part_of UBERON:0010207 ! nictitating membrane
property_value: RO:0002175 NCBITaxon:40674
property_value: UBPROP:0000008 "these laminae may consist of purely hyaline cartilage (cats and horses) or may be heavily invested with elastic fibers (dogs, pigs, and cows; Schlegel et al., 2001)" xsd:string

[Term]
id: UBERON:0010311
name: scleral sesamoid bone
namespace: uberon
def: "A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle)" [PMID:16496288]
synonym: "scleral sesamoid" EXACT [PMID:16496288]
synonym: "scleral sesamoid element" EXACT []
synonym: "sesamoideum esclerae" EXACT [PMID:16496288]
is_a: UBERON:0010290 ! scleral ossicle
property_value: UBPROP:0000010 "During contraction, the scleral sesamoid bone acts to anchor the pyramidal nictitating muscle to the sclera and divert the tendon from pro- jecting over the cornea. It remains to be determined whether this is indeed a true sesamoid (sensu; Vickaryous and Olson, 2006), as the scleral sesa- moid is actually invested within the synovial tendon sheath and not the tendon per se" xsd:string

[Term]
id: UBERON:0010330
name: eyelid mesenchyme
namespace: uberon
def: "Mesenchyme that is part of a developing eyelid." [OBOL:automatic]
xref: EMAPA:32759
is_a: UBERON:0003314 ! eye mesenchyme
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0010349
name: otic capsule pre-cartilage condensation
namespace: uberon
def: "A otic capsule endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic]
synonym: "otic capsule anlage" EXACT []
xref: EHDAA2:0000833
is_a: UBERON:0004637 ! otic capsule

[Term]
id: UBERON:0010366
name: conjunctival vasculature
namespace: uberon
def: "A vasculature that is part of a conjunctiva." [OBOL:automatic]
synonym: "conjunctival veins" EXACT [FMA:70887]
synonym: "conjunctival veins set" EXACT [FMA:70887]
synonym: "set of conjunctival veins" EXACT [FMA:70887]
synonym: "venae conjunctivales" EXACT LATIN [FMA:TA]
xref: FMA:70887
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001811 ! conjunctiva

[Term]
id: UBERON:0010367
name: conjunctival vein
namespace: uberon
def: "A vein that is part of a conjunctiva." [OBOL:automatic]
synonym: "conjunctival blood vessel" BROAD []
xref: FMA:70887
xref: SCTID:149885003
relationship: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0010366 ! conjunctival vasculature

[Term]
id: UBERON:0010379
name: superior tarsal muscle
namespace: uberon
def: "The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid." [Wikipedia:Superior_tarsal_muscle]
synonym: "mueller muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "Mueller's muscle" EXACT [FMA:49058]
synonym: "Muller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "musculus tarsalis superior" RELATED LATIN [Wikipedia:Superior_tarsal_muscle]
synonym: "Müller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "the superior tarsal muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
xref: FMA:49058
xref: SCTID:244775007
xref: Wikipedia:Superior_tarsal_muscle
is_a: UBERON:0003386 ! smooth muscle of eye
relationship: part_of UBERON:0004773 ! superior eyelid tarsus
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png xsd:anyURI
property_value: IAO:0000116 "declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle)" xsd:string

[Term]
id: UBERON:0010409
name: ocular surface region
namespace: uberon
def: "The integrated unit (of the eye) that consists of the conjunctiva, the corneal surface, and the ocular mucosal adnexa including the lid margins and the meibomian gland openings, the lacrimal glands and the lacrimal drainage system, all which are critical to maintain ocular surface integrity and provide protection from external antigens and pathogenic microorganisms." [MP:0013754]
subset: pheno_slim
synonym: "eye surface" EXACT [MA:0002486]
synonym: "eye surface region" EXACT []
synonym: "ocular surface" EXACT []
xref: EMAPA:35336
xref: MA:0002486
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0010425
name: internal naris
namespace: uberon
def: "A naris that is located inside the nasal cavity and connects to the pharynx." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
synonym: "choana" EXACT []
synonym: "choanae" RELATED PLURAL []
synonym: "internal choana" EXACT []
synonym: "internal nares" RELATED PLURAL []
synonym: "internal nostril" RELATED []
xref: NCIT:C32856
is_a: UBERON:0000003 ! naris
property_value: UBPROP:0000007 "choanal" xsd:string
property_value: UBPROP:0000008 "In humans the only internal naris is the posterior nasal aperture, which connects to the nasopharynx" xsd:string
property_value: UBPROP:0000202 FMA:76585

[Term]
id: UBERON:0010426
name: oropharyngeal choana
namespace: uberon
def: "opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [https://orcid.org/0000-0002-6601-2165]
synonym: "apertura nasalis interna" RELATED [AAO:0000025]
synonym: "choana of oropharynx" EXACT []
synonym: "cleft palate" RELATED []
synonym: "oropharyngeal naris" EXACT []
synonym: "palatal choana" EXACT []
synonym: "palatal cleft" RELATED []
is_a: UBERON:0010425 ! internal naris
property_value: IAO:0000116 "todo - check AAO:0000025 apertura nasalis interna" xsd:string
property_value: RO:0002161 NCBITaxon:9606
property_value: UBPROP:0000001 "Hole on the nasal capsule that connects the nasal and buccal cavites.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000025", ontology="AAO", source="AAO:LAP"}
property_value: UBPROP:0000002 "relationship loss: subclass nasal opening (AAO:0000316)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000025", ontology="AAO"}
property_value: UBPROP:0000009 "has function in pressure equalization in birds that fly to high altitudes" xsd:string

[Term]
id: UBERON:0010427
name: ciliary processes
namespace: uberon
def: "The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens." [Wikipedia:Ciliary_processes]
synonym: "ciliary process" RELATED [Wikipedia:Ciliary_processes]
synonym: "ciliary processes" EXACT [FMA:76551]
synonym: "ciliary processes set" EXACT [FMA:76551]
synonym: "processus ciliares" EXACT LATIN [FMA:TA]
synonym: "processus ciliares" RELATED LATIN [Wikipedia:Ciliary_processes]
synonym: "set of ciliary processes" EXACT [FMA:76551]
xref: FMA:76551
xref: SCTID:280860001
xref: Wikipedia:Ciliary_processes
relationship: part_of UBERON:0001775 ! ciliary body
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png xsd:anyURI

[Term]
id: UBERON:0010515
name: brille
namespace: uberon
def: "A layer of transparent, immovable disc-shaped skin or scale covering the eyes of some animals for protection, especially in animals without eyelids. The brille has evolved from a fusion of the upper and lower eyelids." [Wikipedia:Brille]
comment: there are transitional stages between total lid loss and full brille formation (Bellairs & Boyd, 1947).
synonym: "eye cap" RELATED []
synonym: "ocular scale" RELATED []
xref: Wikipedia:Brille
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: UBPROP:0000008 "In snakes, there is no eyelid and the brille is clear and cannot be distinguished except when the animal is becoming ready for ecdysis. At that time, it becomes cloudy and is visible as a cover over the eye. When the snake moults, the brille is also shed as part of its skin. The Brilles protect their eyes from dust and dirt and gives them a 'glassy-eyed' blank appearance Snakes, flap-footed lizards, night lizards, and some skinks have brilles. All geckos except those in the subfamily Eublepharinae (eyelid geckos) possess brilles. Fish also have transparent eyelids called adipose eyelids." xsd:string

[Term]
id: UBERON:0010521
name: electroreceptor organ
namespace: uberon
def: "An organ that is capable of detecting electrical stimulus" [http://orcid.org/0000-0002-6601-2165]
synonym: "electric sense organ" EXACT []
synonym: "electroreception organ" EXACT []
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0010887
name: tragus
namespace: uberon
def: "A small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus." [Wikipedia:Tragus_(ear)]
subset: pheno_slim
synonym: "tragal part of pinna" EXACT [FMA:60998]
xref: FMA:60998
xref: NCIT:C33801
xref: SCTID:362541003
xref: UMLS:C0229312 {source="ncithesaurus:Tragus"}
xref: Wikipedia:Tragus_(ear)
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna
property_value: UBPROP:0000008 "The tragus is generally believed to play a role in vertical sound localization in bats" xsd:string

[Term]
id: UBERON:0010893
name: median external naris
namespace: uberon
alt_id: UBERON:0012123
def: "Am unpaired external naris that lies in the midline of the head." [OBOL:automatic]
subset: cyclostome_subset
synonym: "median anterior naris" EXACT []
synonym: "median nostril" EXACT []
synonym: "nasohypophysial opening" EXACT [http://tolweb.org/Hyperoartia]
is_a: UBERON:0005928 ! external naris
property_value: RO:0002161 NCBITaxon:314146
property_value: RO:0002175 NCBITaxon:7762

[Term]
id: UBERON:0010910
name: opisthotic
namespace: uberon
def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html]
comment: see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal."
xref: AAO:0010835
relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule
property_value: UBPROP:0000008 "teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece" xsd:string {source="palaeos"}

[Term]
id: UBERON:0010929
name: stapedius pre-muscle condensation
namespace: uberon
xref: EHDAA2:0001909
is_a: UBERON:0009506 ! mesenchyme of middle ear
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear

[Term]
id: UBERON:0010935
name: tensor tympani pre-muscle condensation
namespace: uberon
xref: EHDAA2:0002002
is_a: UBERON:0009506 ! mesenchyme of middle ear
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear

[Term]
id: UBERON:0010953
name: nasalis muscle
namespace: uberon
def: "The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into 'Compressor nasalis' and 'Dilator nasalis'." [Wikipedia:Nasalis_muscle]
synonym: "compressor naris" RELATED [Wikipedia:Nasalis_muscle]
synonym: "compressor narium minor" RELATED [Wikipedia:Nasalis_muscle]
synonym: "compressor nasi" RELATED [Wikipedia:Nasalis_muscle]
synonym: "musculus nasalis" RELATED LATIN [Wikipedia:Nasalis_muscle]
synonym: "nasalis" EXACT [FMA:46770]
xref: FMA:46770
xref: SCTID:244732001
xref: Wikipedia:Nasalis_muscle
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle
property_value: depicted:by http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png xsd:anyURI

[Term]
id: UBERON:0011060
name: perilymphatic channel
namespace: uberon
def: "A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space." [MESH:A09.246.631.246.280, Wikipedia:Perilymphatic_duct]
synonym: "cochlear aqueduct" RELATED [FMA:77822, MESH:A09.246.631.246.280]
synonym: "ductus perilymphaticus" EXACT [AAO:0000136]
synonym: "perilymphatic duct" RELATED [MESH:A09.246.631.246.280]
synonym: "perilymphatic space" RELATED [MA:0000248]
xref: AAO:0000136
xref: EMAPA:35677
xref: FMA:77822
xref: MA:0000248
xref: SCTID:368950002
xref: Wikipedia:Perilymphatic_duct
xref: ZFA:0005461
relationship: part_of UBERON:0001846 {source="MA"} ! internal ear
property_value: IAO:0000116 "relationship to FMA class unclear" xsd:string
property_value: UBPROP:0000001 "Duct that contains perilymph[ZFA:0005461, ZFIN:curator]." xsd:string {source="ZFA:0005461, ZFIN:curator"}

[Term]
id: UBERON:0011078
name: endolymphatic space
namespace: uberon
def: "endolymph-filled space contained by the membranous labyrinth." [http://medical-dictionary.thefreedictionary.com/endolymphatic+space]
xref: FMA:77823
xref: SCTID:279856000
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth
relationship: part_of UBERON:0002295 ! scala media
property_value: UBPROP:0000007 "endolymphatic" xsd:string

[Term]
id: UBERON:0011167
name: septomaxilla bone
namespace: uberon
def: "Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis." [AAO:0000556, https://github.com/obophenotype/uberon/issues/97]
comment: A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity
synonym: "internasale" RELATED [AAO:0000556]
synonym: "intranasal" RELATED [AAO:0000556]
synonym: "lacrimale" RELATED [AAO:0000556]
synonym: "le cornet" RELATED [AAO:0000556]
synonym: "nariale" RELATED [AAO:0000556]
synonym: "nasale" RELATED [AAO:0000556]
synonym: "os internasale" RELATED [AAO:0000556]
synonym: "os nariale" RELATED [AAO:0000556]
synonym: "septomaxilla" EXACT [AAO:0000556]
synonym: "septomaxillary" RELATED [AAO:0000556]
synonym: "turbinale" RELATED [AAO:0000556]
xref: AAO:0000556
relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly

[Term]
id: UBERON:0011186
name: Krause's gland
namespace: uberon
def: "small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva" [Wikipedia:Krause's_glands]
synonym: "accessory lacrimal gland" BROAD [FMA:59056]
synonym: "conjunctival gland" BROAD [FMA:59056]
synonym: "Krause gland" EXACT [FMA:59056]
xref: FMA:59056
xref: NCIT:C32678
xref: SCTID:23492003
xref: SCTID:278359007
xref: UMLS:C1306642 {source="ncithesaurus:Gland_of_Krause"}
xref: Wikipedia:Krause's_glands
is_a: UBERON:0013226 ! accessory lacrimal gland
relationship: part_of UBERON:0001351 {source="ncithesaurus"} ! lacrimal sac

[Term]
id: UBERON:0011221
name: ora serrata of retina
namespace: uberon
def: "The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae." [Wikipedia:Ora_serrata]
synonym: "ora ciliaris retina" RELATED [Wikipedia:Ora_serrata]
synonym: "ora ciliaris retinae" RELATED [Wikipedia:Ora_serrata]
synonym: "ora serrata" EXACT [FMA:58600]
synonym: "ora serrata retinae" EXACT LATIN [FMA:TA]
xref: FMA:58600
xref: SCTID:280612002
xref: Wikipedia:Ora_serrata
relationship: part_of UBERON:0001766 ! anterior chamber of eyeball

[Term]
id: UBERON:0011222
name: intra-ocular muscle
namespace: uberon
synonym: "intrinsic muscle of eyeball" EXACT []
synonym: "intrinsic ocular muscle" EXACT [EMAPA:18808]
xref: AAO:0010038
xref: EMAPA:18808
xref: FMA:49150
is_a: UBERON:0004277 ! eye muscle
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0003386 {source="EMAPA"} ! smooth muscle of eye
property_value: UBPROP:0000001 "Muscles within the eye (bulbus oculi).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010038", ontology="AAO", source="AAO:EJS"}

[Term]
id: UBERON:0011255
name: Eimer's organ
namespace: uberon
def: "A sensory organ in which the epidermis is modified to form bulbous papillae. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue." [Wikipedia:Eimer's_organ]
xref: Wikipedia:Eimer's_organ
is_a: UBERON:0000020 {source="Wikipedia"} ! sense organ
property_value: UBPROP:0000008 "present in many moles, and are particularly common in the star-nosed mole, which bears 30,000 of them on its unique tentacled snout" xsd:string

[Term]
id: UBERON:0011256
name: rhinarium
namespace: uberon
def: "Moist, hairless, crenelated area around nostrils of some mammals" [http://anthro.palomar.edu/primate/glossary.htm, Wikipedia:Rhinarium]
xref: Wikipedia:Rhinarium
relationship: part_of UBERON:0007827 ! external nose
property_value: RO:0002161 NCBITaxon:9475
property_value: RO:0002161 NCBITaxon:9606
property_value: UBPROP:0000008 "Absent in Tarsiers" xsd:string

[Term]
id: UBERON:0011287
name: rostral organ
namespace: uberon
def: "A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelacanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve." [Wikipedia:Rostral_organ]
comment: classification as electric organ is putative
xref: Wikipedia:Rostral_organ
is_a: UBERON:0010521 ! electroreceptor organ

[Term]
id: UBERON:0011385
name: parotidoauricular muscle
namespace: uberon
def: "Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species." [MURDOCH:1519]
synonym: "parotidoauricular" EXACT [MA:0002352]
synonym: "parotidoauricularis" EXACT []
xref: EMAPA:37692 {source="MA:th"}
xref: MA:0002352
xref: NCIT:C52976
xref: UMLS:C1709470 {source="ncithesaurus:Parotidoauricular"}
is_a: UBERON:0001583 ! extrinsic auricular muscle

[Term]
id: UBERON:0011599
name: lenticular process of incus bone
namespace: uberon
def: "The long ventral process of the incus bone which articulates with the stapes" [http://palaeos.com/vertebrates/glossary/glossaryJL.html]
synonym: "incus crus longum" EXACT [http://palaeos.com]
synonym: "lenticular process" BROAD []
synonym: "lenticular process of incus" EXACT [FMA:52775]
synonym: "processus lenticularis" BROAD []
synonym: "processus lenticularis (incus)" EXACT [FMA:52775]
synonym: "processus lenticularis incudis" EXACT LATIN [FMA:52775, FMA:TA]
xref: FMA:52775
xref: http://palaeos.com/vertebrates/bones/ear/images/Incus3.gif
xref: SCTID:368928003
relationship: part_of UBERON:0001688 {source="FMA"} ! incus bone
property_value: UBPROP:0000008 "the lenticular process may be homologous to the shaft of the stapes and result from fusion of the former quadrate- stapes articulation. This speculation is consistent with the observation that artiodactyls have a very short lenticular process (Thewissen & Hussain (1993)), with perhaps greater length to the corresponding process of the stapes" xsd:string {source="http://palaeos.com/vertebrates/bones/ear/incus.html"}

[Term]
id: UBERON:0011774
name: utriculosaccular duct
namespace: uberon
def: "A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear." [http://www.merriam-webster.com/medical/utriculosaccular%20duct]
comment: Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection
synonym: "Böttcher's canal" EXACT [http://en.wikipedia.org]
synonym: "ductus utricosaccularis" EXACT [FMA:61243]
synonym: "utricosaccular duct" EXACT []
synonym: "utricosaccular duct of membranous labyrinth" EXACT [FMA:61243]
synonym: "utriculo-saccular duct" EXACT []
xref: EMAPA:37980 {source="MA:th"}
xref: FMA:61243
xref: NCIT:C33845
xref: SCTID:279811007
relationship: part_of UBERON:0001862 {source="MP"} ! vestibular labyrinth

[Term]
id: UBERON:0011857
name: acinus of lacrimal gland
namespace: uberon
def: "An acinus that is part of a lacrimal gland." [OBOL:automatic]
synonym: "lacrimal gland acinus" EXACT [FMA:85250]
xref: FMA:85250
relationship: part_of UBERON:0001817 ! lacrimal gland

[Term]
id: UBERON:0011859
name: internal acoustic meatus
namespace: uberon
def: "The internal auditory meatus (also internal acoustic meatus, internal auditory canal, and internal acoustic canal) is a canal in the petrous bone of the temporal bone of the skull that carries nerves from inside the cranium towards the middle and inner ear compartments namely cranial nerve VII and cranial nerve VIII." [Wikipedia:Internal_auditory_meatus]
comment: Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908]
subset: pheno_slim
synonym: "internal acoustic canal" RELATED [Wikipedia:Internal_auditory_meatus]
synonym: "internal acoustic meatus" RELATED [Wikipedia:Internal_auditory_meatus]
synonym: "internal auditory canal" RELATED [Wikipedia:Internal_auditory_meatus]
synonym: "internal auditory meatus" RELATED [Wikipedia:Internal_auditory_meatus]
synonym: "porus acusticus internus" RELATED [Wikipedia:Internal_auditory_meatus]
xref: FMA:53163
xref: NCIT:C95443
xref: SCTID:264484004
xref: UMLS:C0149591 {source="ncithesaurus:Internal_Auditory_Canal_of_Ear"}
xref: Wikipedia:Internal_auditory_meatus
relationship: part_of UBERON:0001846 {source="MP"} ! internal ear

[Term]
id: UBERON:0011865
name: corneal stroma collagen fibril
namespace: uberon
def: "The connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity" [MP:0011650]
subset: pheno_slim
relationship: part_of UBERON:0001777 ! substantia propria of cornea

[Term]
id: UBERON:0011876
name: body of tongue
namespace: uberon
def: "The oral part of the tongue anterior to the terminal sulcus." [http://www.drugs.com/dict/body-of-tongue.html]
synonym: "corpus linguae" EXACT LATIN [http://www.drugs.com/dict/body-of-tongue.html]
synonym: "tongue body" EXACT [FMA:54641]
xref: FMA:54641
xref: SCTID:362090005
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 {source="FMA"} ! tongue

[Term]
id: UBERON:0011877
name: margin of tongue
namespace: uberon
def: "The lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.." [http://www.drugs.com/dict/margin-of-tongue.html]
synonym: "margo linguae" EXACT LATIN [http://www.drugs.com/dict/margin-of-tongue.html]
synonym: "tongue margin" EXACT [FMA:54650]
xref: FMA:54650
xref: SCTID:368572007
xref: SCTID:368594004
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0011892
name: anterior uvea
namespace: uberon
def: "Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris." [MP:0005194]
subset: pheno_slim
synonym: "anterior part of uveal tract" EXACT []
synonym: "anterior uveal tract" EXACT []
synonym: "anterior vascular layer of the eyeball" EXACT []
synonym: "anterior vascular tunic of the eye" EXACT []
synonym: "ciliary body and iris" RELATED []
synonym: "Haller tunica vascula" EXACT [MP:0005194]
synonym: "tunica vasculosa bulbosa" EXACT [MP:0005194]
synonym: "vasculosa oculi" RELATED [MP:0005194]
synonym: "ventral uveal tract" EXACT []
xref: EMAPA:37417 {source="MA:th"}
xref: SCTID:280656002
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001768 {source="MP"} ! uvea
relationship: part_of UBERON:0001801 ! anterior segment of eyeball

[Term]
id: UBERON:0011918
name: line of Schwalbe
namespace: uberon
def: "The thickened peripheral margin of the vitreous membrane of the cornea." [MP:0006250]
subset: pheno_slim
synonym: "Schwalbe line" EXACT [FMA:58422]
synonym: "Schwalbe's line" EXACT [FMA:58422]
synonym: "Schwalbe's ring" EXACT [MP:0006250]
xref: EMAPA:37895 {source="MA:th"}
xref: FMA:58422
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000964 ! cornea
relationship: part_of UBERON:0005969 {source="MP"} ! eye trabecular meshwork
property_value: UBPROP:0000012 "A line in FMA, a structure in MP" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0011922
name: cochlear basement membrane
namespace: uberon
def: "The the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes" [MP:0004598]
subset: pheno_slim
synonym: "basement membrane of cochlear labyrinth" EXACT []
synonym: "cochlea basement membrane" EXACT []
xref: EMAPA:37830 {source="MA:th"}
relationship: part_of UBERON:0002499 ! cochlear labyrinth

[Term]
id: UBERON:0011931
name: nasal hair
namespace: uberon
def: "Hair in the nose" [Wikipedia:Nasal_hair]
subset: pheno_slim
synonym: "hair of nose" EXACT [FMA:53670]
synonym: "hair of vestibular part of nose" EXACT [FMA:53670]
synonym: "nose hair" EXACT [FMA:53670]
xref: FMA:53670
xref: SCTID:368885003
xref: Wikipedia:Nasal_hair
relationship: part_of UBERON:0000004 ! nose

[Term]
id: UBERON:0012128
name: nose tip
namespace: uberon
def: "Outermost point on an external nose or snout" [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/109]
subset: pheno_slim
synonym: "apex nasi" EXACT LATIN [FMA:TA]
synonym: "apex of nose" EXACT [FMA:59518]
synonym: "nasal tip" EXACT [FMA:59518]
synonym: "pirula" RELATED [https://www.abdn.ac.uk/bestiary/translat/84v.hti]
synonym: "snout tip" RELATED []
synonym: "tip of nose" EXACT [FMA:59518]
synonym: "tip of snout" RELATED []
xref: EMAPA:37915 {source="MA:th"}
xref: FMA:59518
xref: SCTID:361926005
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0007827 {source="FMA"} ! external nose
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall

[Term]
id: UBERON:0012278
name: gland of nasal mucosa
namespace: uberon
def: "The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands." [Wikipedia:Nasal_glands]
subset: pheno_slim
synonym: "glandula nasalis" EXACT LATIN []
synonym: "glandulae nasales" EXACT LATIN []
synonym: "nasal gland" BROAD []
xref: EMAPA:37871 {source="MA:th"}
xref: FMA:321518
xref: NCIT:C22725
xref: SCTID:368881007
xref: UMLS:C1522269 {source="ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC"}
xref: Wikipedia:Nasal_glands
relationship: part_of UBERON:0001826 ! nasal cavity mucosa

[Term]
id: UBERON:0012304
name: nasal diverticulum
namespace: uberon
def: "Caudally blind-ending cutaneous pouch lined with skin that occupies the nasoincisive notch. It's ventral and medial walls is formed by the alar fold. It's lateral wall is formed by the external nares and it's dorsal wall is formed by the straight fold. Lined by pigmented predominantly hairless skin. It has an external opening located on the dorsolateral aspect of the "true nostril". When the horse is exercising, obliteration of the nasal diverticulum greatly widens the nostrils increasing air intake[MURDOCH]." [ISBN:3899930983, MURDOCH:1367]
synonym: "false nostril" RELATED []
synonym: "nasal trumpet" RELATED [ISBN:3899930983]
synonym: "soft nose" RELATED [ISBN:3899930983]
relationship: part_of UBERON:0005928 ! external naris

[Term]
id: UBERON:0012305
name: marginal cutaneous pouch of ear
namespace: uberon
def: "A fold of skin at the caudal border of the auricle." [ISBN:9783899930993]
synonym: "cutaneous marginal pouch" RELATED []
synonym: "marginal cutaneous pouch" RELATED []
is_a: UBERON:0001459 ! skin of external ear
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0012430
name: tunica fibrosa of eyeball
namespace: uberon
def: "The sclera and cornea form the fibrous tunic of the bulb of the eye; the sclera is opaque, and constitutes the posterior five-sixths of the tunic; the cornea is transparent, and forms the anterior sixth." [Wikipedia:Fibrous_tunic_of_eyeball]
synonym: "corneosclera" RELATED [Wikipedia:Fibrous_tunic_of_eyeball]
synonym: "fibrous layer of eyeball" EXACT [FMA:58102]
synonym: "fibrous tunic" RELATED [Wikipedia:Fibrous_tunic_of_eyeball]
synonym: "tunica fibrosa" BROAD []
xref: FMA:58102
xref: SCTID:361318005
xref: Wikipedia:Fibrous_tunic_of_eyeball
relationship: part_of UBERON:0010230 ! eyeball of camera-type eye
property_value: RO:0002175 NCBITaxon:7955 {source="DOI:10.1177/0192623311409597"}

[Term]
id: UBERON:0013120
name: eyelid submuscular connective tissue
namespace: uberon
xref: EMAPA:37534 {source="MA:th"}
xref: MA:0001253
is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue

[Term]
id: UBERON:0013174
name: sigmoid process of tympanic bone
namespace: uberon
def: "A wavy crest externally on the tympanic bone of cetaceans." [http://palaeos.com/vertebrates/glossary/glossaryS.html]
synonym: "sigmoid process" EXACT []
synonym: "sigmoid process of auditory bulla" EXACT []
relationship: part_of UBERON:0008959 ! auditory bulla

[Term]
id: UBERON:0013190
name: entotympanic bone
namespace: uberon
def: "Entotympanics are independent elements present in the auditory bullae of various eutherians" [DOI:10.1023/A\:1020538313412]
synonym: "entotyympanic" RELATED []
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0013201
name: olfactory pathway
namespace: uberon
def: "Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb." [MESH:A08.186.211.577.699]
synonym: "anterior perforated substance" RELATED [MESH:A08.186.211.577.699]
synonym: "rhinencephalon" RELATED [MESH:A08.186.211.577.699]
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2078
xref: MESH:A08.186.211.577.699
xref: SCTID:281148007
xref: Wikipedia:Rhinencephalon
relationship: part_of UBERON:0005725 ! olfactory system

[Term]
id: UBERON:0013208
name: Grueneberg ganglion
namespace: uberon
def: "An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures." [Wikipedia:Gr%C3%BCneberg_ganglion]
synonym: "GG" RELATED ABBREVIATION [NCBIBook:NBK55971]
synonym: "Gruneberg ganglion" RELATED [MA:0002891]
synonym: "Grüneberg ganglion" EXACT []
synonym: "septal organ of Gruneberg" RELATED [MA:0002891]
xref: EMAPA:35765
xref: MA:0002891
xref: Wikipedia:Gr%C3%BCneberg_ganglion
is_a: UBERON:0015245 {source="MA", source="NCBIBook:NBK55971"} ! septal olfactory organ

[Term]
id: UBERON:0013211
name: cerumen gland
namespace: uberon
def: "A specialized sudoriferous gland (sweat glands) located subcutaneously in the external auditory canal." [Wikipedia:Ceruminous_glands]
subset: pheno_slim
synonym: "cerumen-secreting gland" EXACT []
synonym: "ceruminous gland" EXACT []
synonym: "ceruminous sweat gland" EXACT [ISBN:0123813611]
synonym: "earwax gland" EXACT []
xref: NCIT:C32294
xref: SCTID:368648008
xref: UMLS:C0229352 {source="ncithesaurus:Ceruminous_Gland"}
xref: Wikipedia:Ceruminous_glands
relationship: part_of UBERON:0001691 ! external ear
property_value: RO:0002174 NCBITaxon:10088 {source="ISBN:0123813611", source="https://github.com/obophenotype/mouse-anatomy-ontology/issues/99"}
property_value: UBPROP:0000010 "Ceruminous glands are simple, coiled, tubular glands made up of an inner secretory layer of cells and an outer myoepithelial layer of cells. The glands drain into larger ducts, which then drain into the guard hairs that reside in the external auditory canal. Here they produce cerumen, or earwax, by mixing their secretion with sebum and dead epidermal cells" xsd:string

[Term]
id: UBERON:0013224
name: Ciaccio's gland
namespace: uberon
def: "Ciaccio's glands are small tubular accessory lacrimal glands (glandulae lacrimales accessoriae) found in the lacrimal caruncle of the eyelid. They are located in the upper border of the tarsus, approximately in the middle between the extremities of the tarsal glands. Sometimes they are situated slightly above the tarsus. There are usually 2 to 5 of these glands in the upper eyelid, and their function is to produce tears which are secreted onto the surface of the conjunctiva. They are named after Italian anatomist Giuseppe Vincenzo Ciaccio (1824b1901), who described these glands in 1874. They are sometimes called Wolfring's glands after Polish ophthalmologist Emilj von Wolfring (1832-1906), who described them during the same time period as did Ciaccio. Another type of accessory lacrimal gland are Krause's glands, which are smaller, more numerous than Ciaccio's glands and are found along the superior and inferior fornices of the conjunctival sac." [Wikipedia:Ciaccio's_glands]
synonym: "gland of Wolfring" EXACT [ncithesaurus:Gland_of_Wolfring, Wikipedia:Ciaccio's_glands]
synonym: "gland of Wolfring and Ciacco" EXACT []
synonym: "Wolfring's gland" EXACT [Wikipedia:Ciaccio's_glands]
xref: NCIT:C32680
xref: SCTID:278361003
xref: Wikipedia:Ciaccio's_glands
is_a: UBERON:0013226 ! accessory lacrimal gland
is_a: UBERON:0013229 ! eyelid gland
relationship: part_of UBERON:0001711 {source="ncithesaurus"} ! eyelid

[Term]
id: UBERON:0013226
name: accessory lacrimal gland
namespace: uberon
def: "Serous gland with distended lumen. It includes the gland of Krause in the lacrimal sac and the gland of Wolfring on the inner surface of the upper eyelid. (NCI)" [ncithesaurus:Accessory_Lacrimal_Gland]
synonym: "glandulae lacrimales accessoriae" EXACT LATIN []
xref: FMA:320425
xref: NCIT:C74586
xref: SCTID:278360002
xref: UMLS:C0266586 {source="ncithesaurus:Accessory_Lacrimal_Gland"}
is_a: UBERON:0001817 ! lacrimal gland
property_value: IAO:0000116 "may be re-classified as a sibling of lacrimal gland" xsd:string

[Term]
id: UBERON:0013227
name: crypt of Henle
namespace: uberon
def: "Crypts of Henle are microscopic pockets found in scattered sections of the conjunctiva around the eyeball. They are responsible for secreting mucin, a proteinous substance that makes up the inner layer of tears. It coats the cornea to provide a hydrophilic layer that allows for even distribution of the tear film. The layer of mucin allows tears to glide evenly across the eye's surface[WP]." [Wikipedia:Crypts_of_Henle]
synonym: "crypts of Henle" EXACT [Wikipedia:Crypts_of_Henle]
synonym: "gland of Henle" EXACT []
synonym: "Henle's gland" EXACT [Wikipedia:Crypts_of_Henle]
xref: SCTID:278362005
xref: Wikipedia:Crypts_of_Henle
is_a: UBERON:0013226 ! accessory lacrimal gland

[Term]
id: UBERON:0013228
name: sweat gland of eyelid
namespace: uberon
def: "Glands of Moll, also known as ciliary glands, are modified apocrine sweat glands that are found on the margin of the eyelid. They are next to the base of the eyelashes, and anterior to the Meibomian glands within the distal eyelid margin. These glands are relatively large and tubular-shaped. The glands of Moll are named after Dutch oculist Jacob Anton Moll (1832-1914). Glands of Moll empty into the adjacent lashes. Glands of Moll and Zeis secrete lipid that adds to the superficial layer of the tear film, retarding evaporation. The glands of Moll are prone to infection and blockage of its duct with sebum and cell debris. Blockage of the gland's duct causes swelling which can manifest itself as a stye." [Wikipedia:Gland_of_Moll]
synonym: "ciliary gland" EXACT [FMA:59159]
synonym: "ciliary gland of moll" EXACT [FMA:59159]
synonym: "ciliary sweat gland of eyelid" EXACT [FMA:59159]
synonym: "gland of Moll" EXACT [FMA:59159]
synonym: "Moll's gland" EXACT [FMA:59159]
xref: FMA:59159
xref: NCIT:C32679
xref: SCTID:280586002
xref: Wikipedia:Gland_of_Moll
is_a: UBERON:0003605 ! eye skin gland
is_a: UBERON:0013229 ! eyelid gland
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0013229
name: eyelid gland
namespace: uberon
def: "Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland)." [http://orcid.org/0000-0002-6601-2165]
synonym: "gland of eyelid" EXACT []
xref: SCTID:280574000
is_a: UBERON:0004859 ! eye gland
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0013230
name: nictitans gland
namespace: uberon
def: "A gland producing tears in a third eyelid in the corner of each eye." [ncithesaurus:Gland_of_the_Third_Eyelid]
comment: Disease notes: Prolapse of the Nicititans Gland is also known as Cherry Eye
synonym: "gland of nictitating membrane" BROAD []
synonym: "gland of the third eyelid" BROAD [ncithesaurus:Gland_of_the_Third_Eyelid]
synonym: "glandula palpebra tertia superficialis" RELATED LATIN [PMID:7559104]
synonym: "superficial gland of the nictitating membrane" RELATED [PMID:7559104]
synonym: "superficial gland of the third eyelid" RELATED [ISBN:1118473523]
xref: NCIT:C77616
is_a: UBERON:0013229 ! eyelid gland
relationship: part_of UBERON:0010207 ! nictitating membrane
property_value: IAO:0000232 "This gland is distinct from the other medial ocular gland, the Harderian gland, and is typified by clusters of glandular tissue within the nictitating membrane" xsd:string
property_value: RO:0002161 NCBITaxon:39107 {source="ISBN:1118473523"}
property_value: RO:0002175 NCBITaxon:10047 {source="ISBN:1118473523"}

[Term]
id: UBERON:0013231
name: sebaceous gland of eyelid
namespace: uberon
def: "Any of the sebaceous glands that are in the eyelid. Examples: gland of Zeis (services eyelashes), gland of Meibom (tarsal gland - unconnected to eyelids)." [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0003484 ! eye sebaceous gland
is_a: UBERON:0013229 ! eyelid gland
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0013233
name: supraorbital gland
namespace: uberon
def: "A lateral nasal gland that removes sodium chloride from the bloodstream." [Wikipedia:Supraorbital_gland]
xref: Wikipedia:Supraorbital_gland
is_a: UBERON:0012278 ! gland of nasal mucosa
property_value: UBPROP:0000009 "The gland's function is similar to that of the kidneys, though it is much more efficient at removing salt, allowing Penguins to survive without access to fresh water. Contrary to popular belief, the gland does not directly convert saltwater to freshwater. The term supraorbital refers to the area just above the eye socket (which is known as the orbit of the eye. ) Living in saltwater environments would naturally pose a large problem for penguins because the ingestion of saltwater would be detrimental to a penguin's health. Although penguins do not directly drink water, it is taken in when they engulf prey. As a result, saltwater enters their system and must be effectively excreted. The supraorbital gland has thus enabled the penguins' survival in such environments due to its water-filtering capability. The gland is located just above the eyes and surrounds a capillary in the head. This capillary constantly strains out the salt in the saltwater that a penguin takes in. Since the byproduct of the gland has roughly five times as much salt as would normally be found in the animal's fluids, the supraorbital gland is highly efficient. The penguin excretes the salt byproduct as a brine through its bill. Often, the fluid drips out, and this gives the appearance of a runny nose. However, the fluid may also be sneezed out. In the absence of saltwater, caused by captivity, the supraorbital gland will lie dormant as it has no other purpose. Having a dormant supraorbital gland does not negatively affect the health of a penguin" xsd:string

[Term]
id: UBERON:0013397
name: stratum argenteum of choroid
namespace: uberon
def: "A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults." [PMID:14738502]
synonym: "choroid stratum argenteum" EXACT []
synonym: "stratum argenteum" BROAD [PMID:14738502]
relationship: part_of UBERON:0001776 ! optic choroid
property_value: RO:0002175 NCBITaxon:8065
property_value: UBPROP:0000008 "In species known to have a stratum argenteum as adults, like the toadfish (Toad- fishes), the tapetum lucidum is absent or vestigial and there is little choroidal melanin[PMID:14738502]" xsd:string

[Term]
id: UBERON:0013398
name: choroidal gland
namespace: uberon
def: "A gland that is part of a optic choroid." [OBOL:automatic]
comment: Requires review
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001776 ! optic choroid
property_value: UBPROP:0000001 "a gland on the dorsal half of the fish eyeball[http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid]l" xsd:string {source="http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid"}
property_value: UBPROP:0000001 "Teleosts bear a body of capillary adjacent to the optic nerve called the choroidal gland. Though its function is not known, it is believed to be a supplemental oxygen carrier[Wikipedia:Choroid#In_bony_fish]." xsd:string {source="Wikipedia:Choroid#In_bony_fish"}

[Term]
id: UBERON:0013399
name: blood vessel layer of choroid
namespace: uberon
synonym: "Haller's layer" NARROW [FMA:58435]
synonym: "lamina choroideae vasculosa" EXACT LATIN [FMA:58435, FMA:TA]
synonym: "lamina vasculosa (choroid)" EXACT [FMA:58435]
synonym: "lamina vasculosa of choroid" EXACT [FMA:58435]
synonym: "outer layer of choroid proper" EXACT [FMA:58435]
synonym: "Sattler's layer" NARROW [FMA:58435]
synonym: "vessel layer of choroid" EXACT [FMA:58435]
xref: FMA:58435
relationship: part_of UBERON:0001776 {source="FMA"} ! optic choroid
property_value: UBPROP:0000001 "a layer of medium-diameter blood vessels of the choroid, a layer of the eye[Wikipedia:Sattler's_layer]." xsd:string {source="Wikipedia:Sattler's_layer"}

[Term]
id: UBERON:0013475
name: gustatory gland
namespace: uberon
def: "A serous salivary gland which resides adjacent to the moats surrounding the circumvallate papillae in the posterior one-third of the tongue, anterior to the terminal sulcus." [Wikipedia:Von_Ebner's_gland]
subset: pheno_slim
synonym: "posterior deep lingual gland" EXACT [PMCID:PMC2667924]
synonym: "posterior lingual serous gland" EXACT [MGI:anna]
synonym: "von Ebner gland" EXACT [Wikipedia:Von_Ebner's_gland]
synonym: "von Ebner's gland" EXACT [Wikipedia:Von_Ebner's_gland]
xref: FMA:293448
xref: Wikipedia:Von_Ebner's_gland
is_a: UBERON:0003409 ! gland of tongue
relationship: part_of UBERON:0010033 ! posterior part of tongue
property_value: UBPROP:0000009 "posterior deep lingual glands produce lingual lipase, which hydrolyzes triacylglycerols in the acidic gastric lumen, the first step in the digestion of dietary fat (Hamosh & Scow, 1973; Hamosh & Burns, 1977). In view of their close proximity to the lingual lymphatic tissues, the glands were also thought to be involved in antimicrobial action and local immune response (Nair & Schroeder, 1983)[PMCID:PMC2667924]" xsd:string
property_value: UBPROP:0000010 "a group of tubulo-acinar serous glands located beneath the circumvallate and foliate papillae of the tongue and their ducts open into the trough at the base of the papillae. The saliva from posterior deep lingual glands is known to modulate the microenvironment at taste reception sites, and affect chemoreception (Gurkan & Bradley, 1988) and it is an important source of growth factors for taste receptor cells (Morris-Wiman et al. 2000)[PMCID:PMC2667924]" xsd:string

[Term]
id: UBERON:0013476
name: dermal layer of tongue
namespace: uberon
def: "." [PMID:23153189]
synonym: "tongue (dermal layer)" EXACT []
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0013477
name: blowhole
namespace: uberon
def: "A hole at the top of a cetacean's head through which the animal breathes air" [Wikipedia:Blowhole_(anatomy)]
synonym: "blowhole slit" NARROW []
xref: Wikipedia:Blowhole_(anatomy)
is_a: UBERON:0005928 ! external naris
property_value: UBPROP:0000008 "Baleen whales have two blowholes positioned in a V-shape while toothed whales have only one blowhole. The blowhole of a sperm whale, a toothed whale, is located left of centre in the frontal area of the snout, and is actually its left nostril, while the right nostril lacks an opening to the surface despite the fact that its nasal passage is otherwise well developed." xsd:string

[Term]
id: UBERON:0013598
name: accessory nucleus of optic tract
namespace: uberon
def: "One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions" [http://www.medilexicon.com/medicaldictionary.php?t=61308]
synonym: "nuclei accessorii tractus optici" EXACT LATIN []
synonym: "nucleus of accessory optic system" EXACT []
synonym: "terminal nucleus of accessory optic tract" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=61308]
xref: FMA:256154
relationship: part_of UBERON:0035594 ! accessory optic system
property_value: UBPROP:0000008 "most vertebrates have at least one AON. Mammals have 4.[ISBN:0471888893]" xsd:string

[Term]
id: UBERON:0013599
name: dorsal accessory nucleus of optic tract
namespace: uberon
synonym: "dorsal terminal nucleus of accessory optic tract" EXACT []
synonym: "dorsal terminal nucleus of the accessory optic tract" EXACT [ABA:DT]
synonym: "nucleus accessorius posterior tractus optici" EXACT LATIN [FMA:77651, FMA:TA]
synonym: "posterior accessory nucleus of optic tract" EXACT [FMA:77651]
synonym: "posterior terminal nucleus of accessory optic tract" EXACT []
xref: BAMS:DT
xref: DMBA:16590
xref: FMA:77651
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1823
xref: MBA:75
is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract

[Term]
id: UBERON:0013600
name: lateral accessory nucleus of optic tract
namespace: uberon
synonym: "lateral terminal nucleus of the accessory optic tract" EXACT [ABA:LT]
synonym: "nucleus accessorius lateralis tractus optici" EXACT LATIN [FMA:77652, FMA:TA]
xref: BAMS:LT
xref: DHBA:13236
xref: FMA:77652
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1843
xref: MBA:66
is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract

[Term]
id: UBERON:0013601
name: medial accessory nucleus of optic tract
namespace: uberon
comment: The medial terminal nucleus is usually very prominent but it is reduced in primates (except, curiously, the tarsier), megachiropterans, Cynocephalus and Bradypus. Metatherians have a large medial terminal nucleus[Pettigrew et al. (1989)]
synonym: "medial terminal nucleus of the accessory optic tract" EXACT [ABA:MT]
synonym: "nucleus accessorius medialis tractus optici" EXACT LATIN [FMA:77653, FMA:TA]
xref: BAMS:MT
xref: FMA:77653
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1069
xref: MBA:58
is_a: UBERON:0013598 {source="FMA"} ! accessory nucleus of optic tract

[Term]
id: UBERON:0013606
name: magnocellular layer of dorsal nucleus of lateral geniculate body
namespace: uberon
comment: Rods; necessary for the perception of movement, depth, and small differences in brightness[WP]
synonym: "lateral geniculate nucleus magnocellular layer" EXACT []
synonym: "magnocellular layer of lateral geniculate nucleus" EXACT []
synonym: "strata magnocellularia" BROAD []
synonym: "strata magnocellularia nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76989, FMA:TA]
xref: DHBA:10431
xref: FMA:76989
xref: PBA:128013078
relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus

[Term]
id: UBERON:0013607
name: parvocellular layer of dorsal nucleus of lateral geniculate body
namespace: uberon
comment: Cones; long- and medium-wavelength ("red" and "green" cones); necessary for the perception of color and form (fine details).[WP]
synonym: "parvocellular layer of lateral geniculate nucleus" EXACT []
synonym: "strata parvocellularia" BROAD []
synonym: "strata parvocellularia nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76992, FMA:TA]
xref: FMA:76992
xref: PBA:128013091
relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus

[Term]
id: UBERON:0013615
name: koniocellular layer of dorsal nucleus of lateral geniculate body
namespace: uberon
comment: Short-wavelength "blue" cones.[WP]
synonym: "konioocellular layer of lateral geniculate nucleus" EXACT []
synonym: "stratum koniocellulare nuclei dorsalis corporis geniculati lateralis" EXACT LATIN [FMA:76988, FMA:TA]
xref: FMA:76988
relationship: part_of UBERON:0002479 ! dorsal lateral geniculate nucleus

[Term]
id: UBERON:0013638
name: horny papilla of tongue
namespace: uberon
synonym: "horny papilla" EXACT []
synonym: "horny papillae" RELATED PLURAL []
is_a: UBERON:0001726 ! papilla of tongue
property_value: UBPROP:0000008 "In carnivores, functions to hold on to meat as it is being cut by the teeth" xsd:string

[Term]
id: UBERON:0013639
name: mechanical papilla of tongue
namespace: uberon
synonym: "mechanical papilla" EXACT []
synonym: "mechanical papillae" RELATED PLURAL []
is_a: UBERON:0001726 ! papilla of tongue

[Term]
id: UBERON:0013679
name: inner canthus of right eye
namespace: uberon
def: "A inner canthus that is part of a right eye." [OBOL:automatic]
synonym: "medial angle of right eye" RELATED [FMA:59319]
synonym: "medial canthus of right eye" RELATED [FMA:59319]
synonym: "right inner canthus" EXACT []
synonym: "right medial canthus" EXACT []
synonym: "right medial palpebral commissure" EXACT [FMA:59319]
xref: FMA:59319
is_a: UBERON:0005611 ! inner canthus
relationship: part_of UBERON:0004549 ! right eye

[Term]
id: UBERON:0013680
name: inner canthus of left eye
namespace: uberon
def: "A inner canthus that is part of a left eye." [OBOL:automatic]
synonym: "left inner canthus" EXACT []
synonym: "left medial canthus" EXACT []
synonym: "left medial palpebral commissure" EXACT [FMA:59320]
synonym: "medial angle of left eye" RELATED [FMA:59320]
synonym: "medial canthus of left eye" RELATED [FMA:59320]
xref: FMA:59320
is_a: UBERON:0005611 ! inner canthus
relationship: part_of UBERON:0004548 ! left eye

[Term]
id: UBERON:0013682
name: peripheral region of retina
namespace: uberon
def: "Region of retina that extends from central retina to ora serrata. Peripheral retina is dominated by rods and also has less ganglion cells and is not as thick as central retina. It is responsible for peripheral and night vision." [https://github.com/obophenotype/uberon/issues/1542, https://github.com/obophenotype/uberon/issues/216, https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/, XAO:0004458]
synonym: "peripheral retina" EXACT [XAO:0004458]
xref: SCTID:264141008
xref: XAO:0004458
relationship: part_of UBERON:0000966 ! retina
property_value: UBPROP:0000001 "Anatomical region comprising the peripheral part of the retina[XAO:0004458]." xsd:string {source="XAO:0004458"}

[Term]
id: UBERON:0013731
name: basilar papilla
namespace: uberon
def: "The auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals." [Wikipedia:Basilar_papilla]
synonym: "basilar papillae" RELATED PLURAL [http://orcid.org/0000-0002-6601-2165]
synonym: "papilla basilaris" EXACT LATIN [AAO:0011018]
synonym: "sensory epithelium of recessus basilaris" RELATED []
xref: AAO:0011018
xref: VHOG:0001567
xref: XAO:0003145
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0001855 {source="MA-abduced"} ! cochlear duct of membranous labyrinth
property_value: IAO:0000116 "consider classifying as a sensory epithelium" xsd:string
property_value: RO:0002161 NCBITaxon:40674
property_value: UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011018", ontology="AAO", source="XAO:curator"}

[Term]
id: UBERON:0013732
name: vestibule of nasal cavity
namespace: uberon
def: "A tube leading from the external naris to the nasal cavity." [AAO:0000984, AAO:EJS]
xref: AAO:0000984
relationship: part_of UBERON:0002268 {source="AAO"} ! olfactory organ

[Term]
id: UBERON:0013764
name: common crus of semicircular duct
namespace: uberon
def: "A nonampullary end of the superior or posterior semicircular ducts." [http://www.medilexicon.com/medicaldictionary.php?s=common+membranous+limb+of+semicircular+ducts]
synonym: "common crus" BROAD []
synonym: "common membranous limb of membranous semicircular ducts" EXACT []
synonym: "common membranous limb of semicircular ducts" EXACT [FMA:71881]
synonym: "crus membranaceum commune ductus semicircularis" EXACT LATIN [FMA:TA]
synonym: "crus membranaceum commune ductuum semicircularium" EXACT LATIN []
xref: FMA:71881
xref: TAO:0005411
xref: ZFA:0005411
relationship: part_of UBERON:0001856 ! semicircular duct

[Term]
id: UBERON:0013766
name: epicanthal fold
namespace: uberon
def: "A fold of skin of the upper eyelid that partially covers the inner corner of the eye." [MGI:smb, VT:0006168]
subset: pheno_slim
synonym: "epicanthic fold" EXACT []
synonym: "epicanthus" EXACT []
synonym: "eye fold" EXACT []
synonym: "medial canthic fold" EXACT [FMA:59370]
synonym: "palpebronasal fold" EXACT [FMA:59370]
synonym: "plica palpebronasalis" EXACT LATIN []
xref: FMA:59370
xref: SCTID:74824007
xref: Wikipedia:Epicanthic_fold
is_a: UBERON:0001457 ! skin of eyelid
relationship: part_of UBERON:0001712 ! upper eyelid

[Term]
id: UBERON:0014389
name: gustatory papilla of tongue
namespace: uberon
def: "A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae." [MGI:smb, MP:0006256]
synonym: "gustatory papilla" EXACT []
synonym: "gustatory papillae" RELATED PLURAL []
synonym: "taste papilla" EXACT []
synonym: "taste papillae" RELATED PLURAL []
xref: FMA:54822
is_a: UBERON:0001726 ! papilla of tongue

[Term]
id: UBERON:0014397
name: lateral process of malleus
namespace: uberon
def: "A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane." [http://www.medilexicon.com/medicaldictionary.php?t=72288]
synonym: "malleus process brevis" EXACT [MA:0002994]
synonym: "process brevis" RELATED [http://medical-dictionary.thefreedictionary.com/processus+brevis]
synonym: "processus lateralis (malleus)" EXACT [FMA:52770]
synonym: "processus lateralis mallei" EXACT LATIN []
synonym: "processus lateralis malleus" EXACT LATIN []
synonym: "short process of malleus" EXACT []
synonym: "tuberculum mallei" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/processus+brevis]
xref: FMA:52770
xref: MA:0002994
xref: SCTID:368921009
relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone

[Term]
id: UBERON:0014451
name: tongue taste bud
namespace: uberon
def: "A taste bud that is located on the tongue, situated on a gustatory papilla." [http://orcid.org/0000-0002-6601-2165]
subset: pheno_slim
synonym: "gustatory papilla taste bud" EXACT []
synonym: "gustatory papillae taste bud" EXACT [MP:0006260]
is_a: UBERON:0001727 ! taste bud
relationship: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0014389 ! gustatory papilla of tongue

[Term]
id: UBERON:0014452
name: gustatory epithelium of tongue
namespace: uberon
def: "A gustatory epithelium that is part of a tongue." [OBOL:automatic]
synonym: "lingual gustatory epithelium" EXACT [http://orcid.org/0000-0002-6601-2165]
xref: BIRNLEX:4099
xref: UMLS:C1179150 {source="BIRNLEX:4099"}
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0014521
name: anterodorsal nucleus of medial geniculate body
namespace: uberon
synonym: "ADMG" BROAD ABBREVIATION [BIRNLEX:1600, NIFSTD:NeuroNames_abbrevSource]
synonym: "anterodorsal nucleus of medial geniculate complex" EXACT [BIRNLEX:1600]
synonym: "anterodorsal nucleus of the medial geniculate body" RELATED [NeuroNames:852]
synonym: "nucleus corporis geniculati medialis, pars anterodorsalis" RELATED [BIRNLEX:1600]
xref: BAMS:MGad
xref: BIRNLEX:1600
xref: HBA:4446
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=852 {source="BIRNLEX:1600"}
relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body

[Term]
id: UBERON:0014624
name: basis modioli
namespace: uberon
synonym: "base of modiolus cochleae" EXACT [FMA:75640]
synonym: "base of modiolus of cochlea" RELATED [BIRNLEX:2522]
synonym: "basis cochleae" EXACT LATIN [FMA:75640, FMA:TA]
synonym: "basis modioli" EXACT HUMAN_PREFERRED [BIRNLEX:2522]
xref: BIRNLEX:2522
xref: FMA:75640
xref: SCTID:279799003
xref: UMLS:C0458781 {source="BIRNLEX:2522"}
relationship: part_of UBERON:0006723 ! cochlear modiolus

[Term]
id: UBERON:0014626
name: base of cochlear canal
namespace: uberon
synonym: "base of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2556]
xref: BIRNLEX:2556
xref: SCTID:279778001
xref: UMLS:C0458766 {source="BIRNLEX:2556"}
relationship: part_of UBERON:0006106 ! cochlear canal

[Term]
id: UBERON:0014628
name: vestibular fissure of the cochlear canal
namespace: uberon
synonym: "vestibular fissure of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2558]
xref: BIRNLEX:2558
xref: SCTID:279772000
xref: UMLS:C0458761 {source="BIRNLEX:2558"}
relationship: part_of UBERON:0006106 ! cochlear canal

[Term]
id: UBERON:0014629
name: terminal part of the cochlear canal
namespace: uberon
synonym: "terminal part of the cochlear canal" EXACT HUMAN_PREFERRED [BIRNLEX:2559]
xref: BIRNLEX:2559
xref: SCTID:279780007
xref: UMLS:C0458768 {source="BIRNLEX:2559"}
relationship: part_of UBERON:0006106 ! cochlear canal

[Term]
id: UBERON:0014698
name: lacrimal caruncle
namespace: uberon
synonym: "caruncula lacrimalis" EXACT LATIN [FMA:TA]
xref: FMA:77672
xref: SCTID:362530000
is_a: UBERON:0010305 {source="FMA"} ! subdivision of conjunctiva

[Term]
id: UBERON:0014790
name: lingual septum
namespace: uberon
def: "The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ." [Wikipedia:Lingual_septum]
synonym: "median fibrous septum" RELATED [Wikipedia:Lingual_septum]
synonym: "septum of tongue" EXACT [FMA:54813]
synonym: "septum of tongue" RELATED [Wikipedia:Lingual_septum]
synonym: "tongue septum" RELATED [Wikipedia:Lingual_septum]
xref: EMAPA:18274
xref: FMA:54813
xref: SCTID:368727001
xref: Wikipedia:Lingual_septum
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001723 ! tongue

[Term]
id: UBERON:0015016
name: stapes endochondral element
namespace: uberon
def: "A stapes bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "stapes element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "stapes skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
is_a: UBERON:0035130 ! auditory ossicle endochondral element

[Term]
id: UBERON:0015017
name: incus endochondral element
namespace: uberon
def: "A incus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "incus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "incus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
is_a: UBERON:0035130 ! auditory ossicle endochondral element

[Term]
id: UBERON:0015018
name: malleus endochondral element
namespace: uberon
def: "A malleus bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "malleus" RELATED [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "malleus element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
synonym: "malleus skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern]
is_a: UBERON:0035130 ! auditory ossicle endochondral element

[Term]
id: UBERON:0015120
name: right outer canthus
namespace: uberon
def: "A outer canthus that is in_the_right_side_of a head." [OBOL:automatic]
synonym: "lateral angle of right eye" RELATED [FMA:59317]
synonym: "lateral canthus of right eye" RELATED [FMA:59317]
synonym: "right angle of eye" EXACT []
synonym: "right lateral canthus" RELATED [FMA:59317]
synonym: "right lateral palpebral commissure" EXACT [FMA:59317]
xref: FMA:59317
is_a: UBERON:0006726 ! outer canthus
property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI

[Term]
id: UBERON:0015121
name: left outer canthus
namespace: uberon
def: "A outer canthus that is in_the_left_side_of a head." [OBOL:automatic]
synonym: "lateral angle of left eye" RELATED [FMA:59318]
synonym: "lateral canthus of left eye" RELATED [FMA:59318]
synonym: "left angle of eye" EXACT []
synonym: "left lateral canthus" RELATED [FMA:59318]
synonym: "left lateral palpebral commissure" EXACT [FMA:59318]
xref: FMA:59318
is_a: UBERON:0006726 ! outer canthus
property_value: UBPROP:0000006 https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern xsd:anyURI

[Term]
id: UBERON:0015147
name: pinna hair
namespace: uberon
def: "A strand of hair that is part of a pinna." [OBOL:automatic]
subset: pheno_slim
synonym: "ear hair" RELATED []
is_a: UBERON:0022279 ! strand of hair on external ear
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0015151
name: Harderian gland duct
namespace: uberon
def: "A duct that is part of a Harderian gland. opens into the conjunctival sac at the base of the nictitating membrane." [PMID:7559104]
synonym: "duct of Harder's gland" EXACT []
synonym: "duct of Harderian gland" EXACT []
synonym: "Harderian duct" RELATED []
relationship: part_of UBERON:0004187 ! Harderian gland
property_value: UBPROP:0000008 "Typically a single duct per gland, but Harderian glands can have more than 1 duct, e.g. in lizards, amphisbaenids and primitive snakes (Bellairs & Boyd, 1947) and possibly some avian species (Burns, 1992)" xsd:string

[Term]
id: UBERON:0015155
name: conjunctival space
namespace: uberon
def: "A anatomical space that is enclosed by a conjunctiva." [OBOL:automatic]
synonym: "cavity of conjunctival sac" EXACT [FMA:59083]
synonym: "conjunctival sac cavity" EXACT [FMA:59083]
synonym: "subbrillar space" NARROW [NCBITaxon:8570, PMID:7559104]
synonym: "subconjunctival space" EXACT []
xref: FMA:59083
xref: SCTID:280957009
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0005908 {source="FMA"} ! conjunctival sac

[Term]
id: UBERON:0015165
name: multi-unit eye
namespace: uberon
def: "An eye consisting of multiple light-sensing organs" [http://orcid.org/0000-0002-6601-2165, PMID:21062451]
is_a: UBERON:0000970 ! eye
property_value: RO:0002161 NCBITaxon:7742
property_value: RO:0002175 NCBITaxon:6340 {notes="present on tentacular crown", source="PMID:21062451"}
property_value: RO:0002175 NCBITaxon:6544 {notes="present on mantle edge in arcacean Bivalvia", source="PMID:21062451"}
property_value: RO:0002175 NCBITaxon:7588 {notes="The eyes (optic cushions) on the oral surface of Asteroida (Echinodermata), close to the base of the terminal tentacles, are also composed of a number of simple ocelli - as many as 80-200 in certain species", source="PMID:21062451"}

[Term]
id: UBERON:0015169
name: tapetum
namespace: uberon
def: "Light reflecting layer found in a variety of different types of eye." [http://orcid.org/0000-0002-6601-2165]
subset: functional_classification
synonym: "tapetal layer" EXACT []
synonym: "tapetum layer" EXACT []
xref: SPD:0000343
relationship: part_of UBERON:0000970 ! eye
property_value: RO:0002161 NCBITaxon:8782 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002161 NCBITaxon:9321 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002161 NCBITaxon:9443 {editor="cjm", source="PMID:14738502"}
property_value: RO:0002161 NCBITaxon:9606
property_value: RO:0002161 NCBITaxon:9822 {editor="cjm", source="PMID:14738502"}
property_value: UBPROP:0000007 "tapetal" xsd:string

[Term]
id: UBERON:0015170
name: nauplius eye
namespace: uberon
def: "An eye that consists of a cluster of three or four median eyes that form a single structural unit but are separated from one another by pigment layers" [PMID:21062451]
synonym: "four-partite eye" NARROW [PMID:21062451]
synonym: "three-partite eye" NARROW [PMID:21062451]
is_a: UBERON:0000970 ! eye

[Term]
id: UBERON:0015216
name: nasal meatus
namespace: uberon
xref: EMAPA:18593
xref: FMA:53146
xref: SCTID:310212002
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose

[Term]
id: UBERON:0015219
name: middle nasal meatus
namespace: uberon
def: "The middle meatus is a nasal opening or canal situated between the middle and inferior conchae, and extends from the anterior to the posterior end of the latter. The lateral wall of this meatus can be satisfactorily studied only after the removal of the middle concha. On it is a curved fissure, the hiatus semilunaris, limited below by the edge of the uncinate process of the ethmoid and above by an elevation named the bulla ethmoidalis; the middle ethmoidal cells are contained within this bulla and open on or near to it. Through the hiatus semilunaris the meatus communicates with a curved passage termed the infundibulum, which communicates in front with the anterior ethmoidal cells and in rather more than fifty percent of skulls is continued upward as the frontonasal duct into the frontal air-sinus; when this continuity fails, the frontonasal duct opens directly into the anterior part of the meatus. Below the bulla ethmoidalis and hidden by the uncinate process of the ethmoid is the opening of the maxillary sinus (ostium maxillare); an accessory opening is frequently present above the posterior part of the inferior nasal concha." [Wikipedia:Middle_nasal_meatus]
synonym: "middle meatus" RELATED [Wikipedia:Middle_nasal_meatus]
synonym: "middle meatus of the nose" RELATED [Wikipedia:Middle_nasal_meatus]
xref: EMAPA:19277
xref: FMA:53139
xref: SCTID:361925009
xref: Wikipedia:Middle_nasal_meatus
is_a: UBERON:0015216 ! nasal meatus

[Term]
id: UBERON:0015220
name: inferior nasal meatus
namespace: uberon
def: "The inferior meatus, the largest of the three meatuses of the nose, is the space between the inferior concha and the floor of the nasal cavity. It extends almost the entire length of the lateral wall of the nose, is broader in front than behind, and presents anteriorly the lower orifice of the nasolacrimal canal." [Wikipedia:Inferior_nasal_meatus]
synonym: "inferior meatus" RELATED [Wikipedia:Inferior_nasal_meatus]
xref: EMAPA:19278
xref: FMA:53140
xref: SCTID:310214001
xref: Wikipedia:Inferior_nasal_meatus
is_a: UBERON:0015216 ! nasal meatus

[Term]
id: UBERON:0015221
name: common nasal meatus
namespace: uberon
xref: FMA:53141
is_a: UBERON:0015216 ! nasal meatus

[Term]
id: UBERON:0015222
name: ventral nasal meatus
namespace: uberon
def: "The ventral nasal meatus is found between the ventral nasal concha and the dorsal surface of the hard palate.It connects the nasal vestibule with the nasopharynx. Rostrally it is narrow at the nasal vestibule and widens caudally towards the nasopharyngeal meatus. The ventral nasal meatus is the main passage for air. Apart from olfaction, the nasal cavity functions to warm the inhaled air as it passes through the meatuses over the vascular beds of the mucosa. The air is humidified by the vaporization of tears and serous nasal secretion. The air is cleaned throughout the scattered mucous glands. These glands secrete mucous through the nasal cavity and the mucous serves to trap the large particles that come into contact with it. PPP Clinically in the horse the ventral nasal meatus is the main passage through which a stomach tube can be passed to the pharynx and oesophagus and then to the stomach. This kind of a tube is commonly used when drenching a horse for colic, as well as having many other veterinary applications. The tube has to pass through the ventral nasal meatus to the nasopharyngeal meatus and the caudal nares to reach the pharynx and oesophagus. If the tube is accidentally passed into the dorsal or middle nasal meatuses it would pass to the ethmotubinates and cause massive haemorrhage." [MURDOCH:2178]
is_a: UBERON:0015216 ! nasal meatus

[Term]
id: UBERON:0015223
name: dorsal nasal meatus
namespace: uberon
def: "The dosal nasal meatus is a narrow passage bounded dorsally by the roof of the nasal cavity and ventrally by the dorsal concha. It terminates caudally at the junction of the inner plate of the frontal bone with the cribiform plate and lateral mass of the ethmoid bone. It is the shortest and shallowest of the three meatuses." [MURDOCH:659]
is_a: UBERON:0015216 ! nasal meatus

[Term]
id: UBERON:0015245
name: septal olfactory organ
namespace: uberon
def: "A spatially segregated cluster of sensory cells in the nasal cavity." [http://www.ncbi.nlm.nih.gov/books/NBK55971/]
xref: EMAPA:35764
xref: MA:0001327
relationship: part_of UBERON:0000004 ! nose
relationship: part_of UBERON:0005726 {source="NCBIBook:NBK55971"} ! chemosensory system

[Term]
id: UBERON:0015246
name: septal organ of Masera
namespace: uberon
def: "A small island of olfactory neuroepithelium lying bilaterally at the ventral base of the nasal septum near the entrance of the nasopharynx." [NCBIBook:NBK55971]
synonym: "SO of Masera" RELATED [NCBIBook:NBK55971]
xref: EMAPA:35766
xref: MA:0002890
is_a: UBERON:0015245 {source="MA"} ! septal olfactory organ
relationship: part_of UBERON:0001997 ! olfactory epithelium
property_value: UBPROP:0000008 "This olfactory apparatus has been observed in many mammals, including rat, mouse, hamster, deer mouse, rabbit, opossum, guinea pig, bandicoot, and koala (Rodolfo-Masera 1943; Adams and McFarland 1971; Bojsen-Moller 1975; Katz and Merzel 1977; Breipohl et al. 1983, 1989; Kratzing 1984a, 1984b; Taniguchi et al. 1993), but not in cat (Breipohl et al. 1983) or ferret (Weiler and Farbman 2003)" xsd:string {source="NCBIBook:NBK55971"}

[Term]
id: UBERON:0015430
name: levator auris longus muscle
namespace: uberon
def: "Muscle organ located on the dorsal surface of the head innervated by the facial nerve" [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle]
synonym: "LAL" RELATED ABBREVIATION [http://neurolex.org/wiki/Category\:Levator_auris_longus_muscle]
synonym: "levator auris longus" EXACT [MA:0002758]
xref: EMAPA:36627
xref: MA:0002758
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0015445
name: anterior lingual gland duct
namespace: uberon
def: "A duct that is part of a anterior lingual gland." [OBOL:automatic]
xref: EMAPA:37641 {source="MA:th"}
xref: MA:0002938
xref: SCTID:362180000
relationship: part_of UBERON:0006330 ! anterior lingual gland

[Term]
id: UBERON:0015476
name: nose skin
namespace: uberon
def: "A zone of skin that is part of a external nose." [OBOL:automatic]
synonym: "external nasal skin" EXACT [FMA:24763]
synonym: "skin of external nose" EXACT [FMA:24763]
synonym: "skin of nose" EXACT [FMA:24763]
xref: EMAPA:37684 {source="MA:th"}
xref: FMA:24763
xref: MA:0003090
relationship: part_of UBERON:0007827 ! external nose

[Term]
id: UBERON:0015751
name: inferior tarsal muscle
namespace: uberon
def: "A smooth muscle tissue that is part of a inferior eyelid tarsus." [OBOL:automatic]
xref: FMA:49059
xref: SCTID:368783000
is_a: UBERON:0003386 ! smooth muscle of eye
relationship: part_of UBERON:0004774 ! inferior eyelid tarsus

[Term]
id: UBERON:0015784
name: duct of olfactory gland
namespace: uberon
def: "A duct that is part of a olfactory gland." [OBOL:automatic]
synonym: "olfactory gland duct" EXACT []
relationship: part_of UBERON:0002232 ! olfactory gland

[Term]
id: UBERON:0015785
name: acinus of olfactory gland
namespace: uberon
def: "A acinus that is part of a olfactory gland." [OBOL:automatic]
synonym: "acinar part of olfactory gland" EXACT []
synonym: "olfactory gland acinus" EXACT []
relationship: part_of UBERON:0002232 ! olfactory gland

[Term]
id: UBERON:0015786
name: respiratory segment of nasal mucosa
namespace: uberon
def: "The portion of the nasal mucosa that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165]
synonym: "pars respiratoria tunicae mucosae nasi" EXACT LATIN [FMA:77198, FMA:TA]
synonym: "respiratory zone of nasal mucosa" EXACT [FMA:77198]
xref: FMA:77198
is_a: UBERON:0001826 ! nasal cavity mucosa
property_value: UBPROP:0000010 "lined with ciliated pseudostratified columnar epithelium (respiratory epithelium). The respiratory segment has a very vascularized lamina propria allowing the venous plexuses of the conchal mucosa to engorge with blood, restricting airflow and causing air to be directed to the other side of the nose." xsd:string {source="Wikipedia:Nasal_cavity"}

[Term]
id: UBERON:0015788
name: olfactory apparatus chamber
namespace: uberon
def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165]
xref: FMA:265136
relationship: part_of UBERON:0000004 ! nose

[Term]
id: UBERON:0015807
name: ear epithelium
namespace: uberon
def: "A epithelium that is part of a ear." [OBOL:automatic]
xref: EMAPA:32800
xref: MA:0003161
is_a: UBERON:0019304 ! sensory organ epithelium
relationship: part_of UBERON:0001690 ! ear

[Term]
id: UBERON:0015808
name: eye epithelium
namespace: uberon
def: "A epithelium that is part of a camera-type eye." [OBOL:automatic]
xref: EMAPA:35957
xref: MA:0003162
is_a: UBERON:0007625 ! pigment epithelium of eye
relationship: part_of UBERON:0000019 ! camera-type eye

[Term]
id: UBERON:0015813
name: middle ear epithelium
namespace: uberon
def: "A epithelium that is part of a middle ear." [OBOL:automatic]
xref: EMAPA:35673
xref: MA:0003169
is_a: UBERON:0015807 ! ear epithelium
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0015814
name: outer ear epithelium
namespace: uberon
def: "A epithelium that is part of a external ear." [OBOL:automatic]
xref: EMAPA:35956
xref: MA:0003170
is_a: UBERON:0015807 ! ear epithelium
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0015885
name: cymba conchae of pinna
namespace: uberon
synonym: "cymba conchae of auricle" EXACT [FMA:61082]
xref: FMA:61082
xref: NCIT:C32420
xref: SCTID:362545007
xref: UMLS:C0229317
relationship: part_of UBERON:0006203 {source="FMA"} ! conchal part of pinna

[Term]
id: UBERON:0016459
name: posterior pole of lens
namespace: uberon
def: "the central point on the posterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php?t=70707]
subset: pheno_slim
synonym: "polus posterior (lens)" EXACT [FMA:58898]
synonym: "polus posterior lentis" EXACT LATIN []
xref: FMA:58898
xref: NCIT:C33375
xref: SCTID:302144008
is_a: UBERON:0019210 ! pole of lens

[Term]
id: UBERON:0016464
name: dorsum of nose
namespace: uberon
def: "The midline prominence of the nose, extending from the nasal root to the tip." [HP:0011119]
subset: pheno_slim
synonym: "nasal dorsum" EXACT [FMA:59517]
synonym: "nasal ridge" RELATED [HP:0011119]
xref: FMA:59517
xref: SCTID:368114008
relationship: part_of UBERON:0007827 {source="FMA"} ! external nose

[Term]
id: UBERON:0016466
name: antihelix
namespace: uberon
def: "On the pinna, a curved prominence of cartilage, parallel with and in front of the helix, is called the antihelix, also known as the anthelix; this divides above into two crura, the crura antihelicis, between which is a triangular depression, the fossa triangularis." [Wikipedia:Antihelix]
subset: pheno_slim
synonym: "anthelix" RELATED [Wikipedia:Antihelix]
synonym: "antihelical part of pinna" EXACT [FMA:60995]
synonym: "antihelix (auricula)" EXACT [FMA:60995]
synonym: "antihelix of pinna" EXACT [FMA:60995]
xref: FMA:60995
xref: NCIT:C32120
xref: SCTID:279612003
xref: UMLS:C0229308
xref: Wikipedia:Antihelix
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0016467
name: antitragus
namespace: uberon
def: "The antitragus is a feature of human ear anatomy. It is a small tubercle that points anteriorly. It is separated from the tragus by the intertragic notch." [Wikipedia:Antitragus]
subset: pheno_slim
synonym: "antitragal part of pinna" EXACT [FMA:61001]
xref: FMA:61001
xref: NCIT:C32121
xref: SCTID:362543000
xref: UMLS:C0229314
xref: Wikipedia:Antitragus
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna

[Term]
id: UBERON:0016490
name: auditory system
namespace: uberon
def: "is the sensory system for the sense of hearing." [NLXANAT:090817]
xref: EMAPA:36002
xref: FMA:7192
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2888
xref: MA:0002443
xref: NCIT:C12889
xref: NLXANAT:090817
xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
xref: UMLS:C0587901 {source="ncithesaurus:Auditory_System"}
xref: Wikipedia:Auditory_system
is_a: UBERON:0007037 ! mechanosensory system
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
property_value: UBPROP:0000012 "Auditory system is general anatomical term in FMA" xsd:string {external_ontology="FMA"}

[Term]
id: UBERON:0016567
name: statoconial membrane
namespace: uberon
def: "An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork." [http://orcid.org/0000-0002-6601-2165, PMID:2482728]
comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/
synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948]
synonym: "otolith membrane" NARROW []
xref: FMA:75570
relationship: part_of UBERON:0001862 {source="MA-abduced"} ! vestibular labyrinth
relationship: part_of UBERON:0002518 ! otolith organ

[Term]
id: UBERON:0016568
name: gelatinous layer of statoconial membrane
namespace: uberon
xref: FMA:75588
relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane

[Term]
id: UBERON:0016569
name: subcupular meshwork of statoconial membrane
namespace: uberon
def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948]
relationship: part_of UBERON:0016567 ! statoconial membrane

[Term]
id: UBERON:0016611
name: auditory hillocks, pharyngeal arch 1 derived
namespace: uberon
def: "A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle]
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0006208 ! auditory hillocks

[Term]
id: UBERON:0016612
name: auditory hillocks, pharyngeal arch 2 derived
namespace: uberon
def: "A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus." [http://php.med.unsw.edu.au/embryology/index.php?title=Hearing_-_Outer_Ear_Development#Pinna-_Auricle]
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0006208 ! auditory hillocks

[Term]
id: UBERON:0016621
name: lunge feeding organ
namespace: uberon
def: "A fibrous capsule located between the jaws of rorqual whales that contains a gelatinous substance and papillae bearing mechanorecaptors." [PMID:22622577]
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:0016622
name: lunge feeding organ papilla
namespace: uberon
def: "." [PMID:22622577]
relationship: part_of UBERON:0016621 ! lunge feeding organ

[Term]
id: UBERON:0016637
name: lateral periolivary nucleus
namespace: uberon
def: "Lateral component of the periolivary nucleus" [http://medical-dictionary.thefreedictionary.com/periolivary+nuclei]
xref: DHBA:12465
xref: FMA:226217
is_a: UBERON:0002971 {source="cjm"} ! periolivary nucleus

[Term]
id: UBERON:0016843
name: lateral nucleus of trapezoid body
namespace: uberon
def: "One of two potential parts of the trapezoid nucleus. Separated by an indistinct boundary, the other is the medial trapezoid nucleus ( Crosby-1962 ). The existence of the trapezoid nucleus in the human is disputed ( Bazwinsky-2003 )" [NeuroNames:2852]
synonym: "lateral nucleus of the trapezoid body" RELATED [NeuroNames:2852]
synonym: "lateral trapezoid nucleus" RELATED [NeuroNames:2852]
synonym: "LNTB" EXACT ABBREVIATION []
xref: DHBA:12459
xref: DMBA:17274
xref: FMA:75730
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2852
is_a: UBERON:0007247 ! nucleus of superior olivary complex
relationship: part_of UBERON:0002128 ! superior olivary complex

[Term]
id: UBERON:0017629
name: mormyromast organ
namespace: uberon
def: "An innervated group of cells in a round capsule at the end of a jelly-filled tube opening to the skin surface of Gymnarchidae and Mormyridae." [http://www.briancoad.com/dictionary/complete%20dictionary.htm]
synonym: "mormyromast" EXACT [http://www.briancoad.com/dictionary/complete%20dictionary.htm]
synonym: "snout organ" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm]
is_a: UBERON:0010521 ! electroreceptor organ

[Term]
id: UBERON:0018104
name: parafoveal part of retina
namespace: uberon
def: "The intermediate belt surrounding the fovea centralis" [http://orcid.org/0000-0002-6601-2165]
synonym: "parafoveal belt" RELATED []
synonym: "parafoveal retina" RELATED []
xref: SCTID:264120002
relationship: part_of UBERON:0000053 ! macula lutea
property_value: UBPROP:0000010 "ganglion cell layer is composed of more than five rows of cells, as well as the highest density of cones" xsd:string

[Term]
id: UBERON:0018105
name: perifoveal part of retina
namespace: uberon
def: "The outermost region surrounding the fovea centralis" [http://orcid.org/0000-0002-6601-2165]
synonym: "perifoveal belt" RELATED []
synonym: "perifoveal retina" RELATED []
xref: SCTID:280617008
relationship: part_of UBERON:0000053 ! macula lutea
property_value: UBPROP:0000010 "the ganglion cell layer contains two to four rows of cells" xsd:string

[Term]
id: UBERON:0018107
name: foveola of retina
namespace: uberon
def: "A region of the fovea centralis that lies in the center of the fovea and contains only cone cells, and a cone-shaped zone of Müller cells" [http://orcid.org/0000-0002-6601-2165]
synonym: "foveola" RELATED []
xref: SCTID:399857002
xref: Wikipedia:Foveola
relationship: part_of UBERON:0001786 ! fovea centralis
property_value: UBPROP:0000008 "in humans is approximately 0.35 mm in diameter" xsd:string

[Term]
id: UBERON:0018108
name: superior auricular muscle
namespace: uberon
def: "The superior auricular muscle, the largest of the three auriculares muscles, is also thin and fan-shaped. Its fibers arise from the galea aponeurotica, and converge to be inserted by a thin, flattened tendon into the upper part of the cranial surface of the auricula." [Wikipedia:Superior_auricular_muscle]
synonym: "auricularis superior" EXACT [FMA:46855]
xref: FMA:46855
xref: SCTID:244759009
xref: Wikipedia:Superior_auricular_muscle
is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle

[Term]
id: UBERON:0018109
name: anterior auricular muscle
namespace: uberon
def: "The anterior auricular muscle, the smallest of the three auriculares muscles, is thin and fan-shaped, and its fibers are pale and indistinct. It arises from the lateral edge of the galea aponeurotica, and its fibers converge to be inserted into a projection on the front of the helix." [Wikipedia:Anterior_auricular_muscle_muscle]
synonym: "auricularis anterior" EXACT [FMA:46856]
xref: FMA:46856
xref: Wikipedia:Anterior_auricular_muscle
is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle

[Term]
id: UBERON:0018110
name: posterior auricular muscle
namespace: uberon
def: "The posterior auricular muscle consists of two or three fleshy fasciculi, which arise from the mastoid portion of the temporal bone by short aponeurotic fibers. They are inserted into the lower part of the cranial surface of the concha." [Wikipedia:Posterior_auricular_muscle_muscle]
synonym: "auricularis posterior" EXACT [FMA:46857]
synonym: "post auricular muscle" RELATED [Wikipedia:Posterior_auricular_muscle]
synonym: "post-auricular muscle" RELATED [Wikipedia:Posterior_auricular_muscle]
xref: FMA:46857
xref: SCTID:244761000
xref: Wikipedia:Posterior_auricular_muscle
is_a: UBERON:0001583 {source="FMA"} ! extrinsic auricular muscle

[Term]
id: UBERON:0018152
name: pars flaccida of tympanic membrane
namespace: uberon
def: "A small, triangular, flaccid portion of the tympanic membrane, or eardrum, lying above the malleolar folds, attached directly to the petrous bone at the notch of Rivinus." [Wikipedia:Pars_flaccida_of_tympanic_membrane]
synonym: "flaccid part" RELATED [Wikipedia:Pars_flaccida_of_tympanic_membrane]
synonym: "pars flaccida" RELATED [Wikipedia:Pars_flaccida_of_tympanic_membrane]
synonym: "pars flaccida (membrana tympanica)" EXACT LATIN [FMA:56721]
synonym: "pars flaccida membranae tympanicae" EXACT LATIN [FMA:56721, FMA:TA]
synonym: "Shrapnell's membrane" EXACT [FMA:56721]
xref: FMA:56721
xref: SCTID:279594005
xref: Wikipedia:Pars_flaccida_of_tympanic_membrane
relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane
property_value: UBPROP:0000008 "Size varies across mammals, with the sheep pars flaccida larger than the human" xsd:string {source="http://audilab.bmed.mcgill.ca/AudiLab/teach/me_saf/me_saf.html"}

[Term]
id: UBERON:0018153
name: pars tensa of tympanic membrane
namespace: uberon
synonym: "pars tensa (membrana tympanica)" EXACT [FMA:56722]
synonym: "pars tensa membranae tympanicae" EXACT LATIN [FMA:56722, FMA:TA]
xref: FMA:56722
xref: SCTID:362555006
relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane

[Term]
id: UBERON:0018154
name: ligament of middle ear
namespace: uberon
def: "A ligament that is part of a middle ear." [OBOL:automatic]
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0018155
name: posterior incudal ligament
namespace: uberon
def: "A fold of mucous membrane that runs from the fossa incudus to the incus." [ISBN:9781604061550]
is_a: UBERON:0018154 ! ligament of middle ear
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0018156
name: malleal ligament
namespace: uberon
def: "A skeletal ligament that attaches to the malleus." [ISBN:9781604061550]
is_a: UBERON:0018154 ! ligament of middle ear
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0018157
name: lateral malleal ligament
namespace: uberon
def: "A malleal ligament that extends from the bony margin of the notch of Rivinus to the neck of the malleus." [ISBN:9781604061550]
is_a: UBERON:0018156 ! malleal ligament

[Term]
id: UBERON:0018158
name: superior malleal ligament
namespace: uberon
def: "A malleal ligament that extends from the tempen tympani to the head of the malleus." [ISBN:9781604061550]
is_a: UBERON:0018156 ! malleal ligament

[Term]
id: UBERON:0018159
name: anterior malleal ligament
namespace: uberon
def: "A malleal ligament that extends from the anterior tympanic wall to the anterior process of the malleus." [ISBN:9781604061550]
is_a: UBERON:0018156 ! malleal ligament

[Term]
id: UBERON:0018160
name: anterior process of malleus
namespace: uberon
synonym: "folian process" EXACT [FMA:52771]
synonym: "processus anterior (malleus)" EXACT [FMA:52771]
synonym: "processus anterior mallei" EXACT LATIN [FMA:52771, FMA:TA]
synonym: "rau's process" EXACT [FMA:52771]
xref: FMA:52771
xref: SCTID:368922002
relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone

[Term]
id: UBERON:0018231
name: labyrinthine artery
namespace: uberon
def: "A long slender branch of the anterior inferior cerebellar artery (85%-100% cases) or basilar artery (<15% cases), arises from near the middle of the artery; it accompanies the vestibulocochlear nerve through the internal acoustic meatus, and is distributed to the internal ear." [Wikipedia:Labyrinthine_artery]
synonym: "arteria auditiva interna" EXACT LATIN [Wikipedia:Labyrinthine_artery]
synonym: "arteria labyrinthi" EXACT LATIN [Wikipedia:Labyrinthine_artery]
synonym: "artery of inner ear" BROAD [FMA:50548]
synonym: "internal auditory artery" EXACT [FMA:50548]
xref: EMAPA:37093 {source="MA:th"}
xref: FMA:50548
xref: NCIT:C32834
xref: SCTID:148672009
xref: Wikipedia:Labyrinthine_artery
relationship: part_of UBERON:0001846 ! internal ear

[Term]
id: UBERON:0018233
name: gland of Zeis
namespace: uberon
def: "Glands of Zeis are unilobar sebaceous glands located on the margin of the eyelid. The glands of Zeis service the eyelash. These glands produce an oily substance that is issued through the excretory ducts of the sebaceous lobule into the middle portion of the hair follicle." [Wikipedia:Gland_of_Zeis]
subset: pheno_slim
synonym: "ciliary sebaceous gland of eyelid" EXACT [FMA:59191]
synonym: "gland of Zeis" EXACT []
synonym: "gland of Zeiss" EXACT [FMA:59191]
synonym: "Zeis gland" EXACT []
xref: FMA:59191
xref: SCTID:281070008
xref: Wikipedia:Gland_of_Zeis
is_a: UBERON:0013231 ! sebaceous gland of eyelid
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0018323
name: hyoid articular area
namespace: uberon
def: "Area on the otic capsule for the articulation of the hyoid" [PHENOSCAPE:alex]
xref: UBERONTEMP:e1c1764a-61b5-4dce-8a59-7ca5a9de0a0b
relationship: part_of UBERON:0004637 ! otic capsule

[Term]
id: UBERON:0018339
name: metotic fissure
namespace: uberon
def: "An embryonic fissure between the otic capsule and the arches which develop into the occipital bones. The fissure may persist into adulthood. It is also referred to as the 'lateral otic fissure' The metotic fissure opens into the vestibular fontanelle, if the fontanelle is present. (Johanson et al. (2003)). Otherwise it opens to the metotic foramen." [http://palaeos.com/vertebrates/glossary/glossaryM.html, PHENOSCAPE:alex]
xref: UBERONTEMP:41980771-8a82-40d2-877e-3156cc80857b
relationship: part_of UBERON:0004637 ! otic capsule

[Term]
id: UBERON:0018356
name: rostral entotympanic element
namespace: uberon
def: "An entotympanic that arises in forward part of tympanic floor. It may be intimately fused witA cartilage of tube during development(MacPhee (1981: 62)) in contrast to a caudal entotympanic arising in the rear tympanic floor. From O'Leary et al. 2012" [PHENOSCAPE:Alex]
xref: UBERONTEMP:c5825cfa-edc2-4717-8625-90ac3f8b6dd3
is_a: UBERON:0013190 ! entotympanic bone

[Term]
id: UBERON:0018357
name: sensory pore
namespace: uberon
def: "." [PHENOSCAPE:Wasila]
synonym: "sensory canal pore" EXACT [PHENOSCAPE:Wasila]
xref: UBERONTEMP:021ff296-2e02-4da5-af3b-b3e7220ac03b
relationship: part_of UBERON:0001032 ! sensory system

[Term]
id: UBERON:0018369
name: upper lateral line
namespace: uberon
def: "dorsal sensory canal line in fish, dorsal to ventral lateral lane" [PHENOSCAPE:Nizar]
xref: UBERONTEMP:2e283d18-0137-43ce-948f-1704f1d0a0a7
is_a: UBERON:0010202 ! lateral line
property_value: IAO:0000116 "consider merging with UBERON:0003095 ! dorsal lateral line" xsd:string

[Term]
id: UBERON:0018370
name: ventral lateral line
namespace: uberon
def: "ventral sensory canal line in fish, ventral to dorsal lateral lane" [PHENOSCAPE:Wasila]
xref: UBERONTEMP:61c755ec-848e-4262-89e4-be2267041e64
is_a: UBERON:0010202 ! lateral line

[Term]
id: UBERON:0018374
name: sallet
namespace: uberon
def: "A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 " [ISBN:9780387714691, PHENOSCAPE:Alex]
xref: UBERONTEMP:caa10252-5f7e-4a55-a72c-cf7986a89363
relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea
property_value: RO:0002175 NCBITaxon:35033 {source="ISBN:9780387714691"}
property_value: RO:0002175 NCBITaxon:8561 {source="ISBN:9780387714691"}

[Term]
id: UBERON:0018389
name: interoceptor
namespace: uberon
def: "A sensory receptor that detects stimulus within the body. Examples of stimuli that would be detected by interoceptors include blood pressure and blood oxygen level." [Wikipedia:Interoceptor]
synonym: "enteroceptor" EXACT [FMA:84656]
synonym: "visceroceptor" EXACT [FMA:84656]
xref: FMA:84656
xref: Wikipedia:Interoceptor
relationship: part_of UBERON:0036255 ! interoceptive system

[Term]
id: UBERON:0018391
name: chemoreceptor
namespace: uberon
def: "A sensory receptor that detects chemical stimulus within the body." [http://orcid.org/0000-0002-6601-2165]
xref: FMA:85604
xref: MESH:A08.800.550.700.120
is_a: UBERON:0018389 {source="FMA"} ! interoceptor
property_value: UBPROP:0000001 "Cells specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." xsd:string {source="MESH:A08.800.550.700.120"}

[Term]
id: UBERON:0018392
name: arterial baroreceptor
namespace: uberon
def: "Arterial baroreceptors are stretch receptors that are stimulated by distortion of the arterial wall when pressure changes." [Wikipedia:Baroreceptor#Arterial_baroreceptors]
synonym: "arterial stretch receptor" RELATED [MESH:A08.800.050.800.900.700]
is_a: UBERON:0004019 ! baroreceptor

[Term]
id: UBERON:0018393
name: low-pressure baroreceptor
namespace: uberon
def: "found in large systemic veins, in pulmonary vessels, and in the walls of the right atrium and ventricles of the heart (the atrial volume receptors)." [Wikipedia:Baroreceptor#Low-pressure_baroreceptors]
is_a: UBERON:0004019 ! baroreceptor

[Term]
id: UBERON:0018394
name: vein baroreceptor
namespace: uberon
def: "A baroreceptor that located_in a vein." [OBOL:automatic]
is_a: UBERON:0018393 ! low-pressure baroreceptor

[Term]
id: UBERON:0018395
name: cardiac baroreceptor
namespace: uberon
def: "A baroreceptor that located_in a heart." [OBOL:automatic]
is_a: UBERON:0018393 ! low-pressure baroreceptor

[Term]
id: UBERON:0018396
name: pulmonary baroreceptor
namespace: uberon
def: "A baroreceptor that located_in a pulmonary vascular system." [OBOL:automatic]
is_a: UBERON:0018393 ! low-pressure baroreceptor

[Term]
id: UBERON:0018508
name: foramen of nasal bone
namespace: uberon
def: "A vascular foramen opening on the outer surface of a nasal bone." [http://medical-dictionary.thefreedictionary.com/nasal+foramina]
synonym: "foramen of nasal bone" RELATED []
synonym: "foramina nasalia" EXACT LATIN [Wikipedia:Nasal_foramina]
synonym: "nasal foramen" EXACT []
synonym: "nasal foramina" RELATED PLURAL [FMA:57653]
xref: FMA:57653
xref: Wikipedia:Nasal_foramina
relationship: part_of UBERON:0001681 ! nasal bone

[Term]
id: UBERON:0018655
name: pars endotympanica
namespace: uberon
def: "This is present in the cat and forms the large medial part of the Bulla tympanica. It is not to be regarded as a part of the pars tympanica, which ossifies directly from connective tissue, whereas the Pars endotympanica is preformed in cartilage. The Septum bullae in the cat is formed by the Pars tympanica as well as by the Pars endotympanica(NOMINA ANATOMICA VETERINARIA (2005))." [http://orcid.org/0000-0002-6601-2165]
relationship: part_of UBERON:0013190 ! entotympanic bone

[Term]
id: UBERON:0018663
name: recessus basilaris
namespace: uberon
def: "An opening of the otic duct within the inner ear. The recessus basilaris can open to the saccule (in frogs) or the lagena (in salamanders and caecilians). The sensory epithelium of the recessus basilaris is the basilar papilla (or papilla basilaris). Reference: Lewis, E.R. and R.E. Lombard. 1988. The amphibian inner ear. Pp. 93-123 in Fritszch, B., et al. (eds.), The Evolution of the Amphibian Auditory System. Wiley & Sons. [curated by D. Blackburn]" [PHENOSCAPE:wd]
synonym: "basilar papillar recess" EXACT []
relationship: part_of UBERON:0001846 ! internal ear
property_value: RO:0002161 NCBITaxon:40674

[Term]
id: UBERON:0019206
name: tongue papilla epithelium
namespace: uberon
xref: EMAPA:35869
xref: MA:0003178
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001726 ! papilla of tongue

[Term]
id: UBERON:0019207
name: chorioretinal region
namespace: uberon
def: "The part of the eye that consists of both the retina and the optic choroid" [http://orcid.org/0000-0002-6601-2165, UBERON:drseb]
subset: pheno_slim
synonym: "chorioretina" EXACT []
synonym: "choroid and retina" EXACT []
synonym: "retinachoroid" EXACT []
synonym: "retinachoroidal region" EXACT []
xref: SCTID:110701000
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0010230 ! eyeball of camera-type eye

[Term]
id: UBERON:0019208
name: anterior pole of lens
namespace: uberon
def: "the central point on the anterior surface of the lens." [http://www.medilexicon.com/medicaldictionary.php]
synonym: "polus anterior (lens)" EXACT [FMA:58897]
synonym: "polus anterior lentis" EXACT LATIN []
xref: FMA:58897
xref: NCIT:C32103
xref: SCTID:302143002
is_a: UBERON:0019210 ! pole of lens

[Term]
id: UBERON:0019210
name: pole of lens
namespace: uberon
def: "A central point or region on the anterior or posterior surface of the lens" [http://orcid.org/0000-0002-6601-2165]
synonym: "lens pole" EXACT []
synonym: "lens zone" EXACT [FMA:58067]
synonym: "zone of lens" RELATED [FMA:58067]
xref: FMA:58067
xref: SCTID:280630009
relationship: part_of UBERON:0000965 ! lens of camera-type eye

[Term]
id: UBERON:0019211
name: supcapsular region of anterior region of lens
namespace: uberon
comment: See https://github.com/obophenotype/uberon/issues/599
relationship: part_of UBERON:0019208 ! anterior pole of lens

[Term]
id: UBERON:0019212
name: supcapsular region of posterior region of lens
namespace: uberon
comment: See https://github.com/obophenotype/uberon/issues/599
relationship: part_of UBERON:0016459 ! posterior pole of lens

[Term]
id: UBERON:0019254
name: upper eyelash
namespace: uberon
subset: pheno_slim
synonym: "eyelash of upper eyelid" EXACT [FMA:59408]
synonym: "hair of upper eyelid" RELATED []
synonym: "upper eyelid cilia" RELATED PLURAL []
synonym: "upper eyelid cilium" EXACT []
synonym: "upper eyelid eyelash" EXACT [FMA:59408]
xref: FMA:59408
relationship: part_of UBERON:0001712 ! upper eyelid

[Term]
id: UBERON:0019255
name: lower eyelash
namespace: uberon
subset: pheno_slim
synonym: "eyelash of lower eyelid" EXACT [FMA:59409]
synonym: "hair of lower eyelid" RELATED []
synonym: "lower eyelid cilia" RELATED PLURAL []
synonym: "lower eyelid cilium" EXACT []
synonym: "lower eyelid eyelash" EXACT [FMA:59409]
xref: FMA:59409
relationship: part_of UBERON:0001713 ! lower eyelid

[Term]
id: UBERON:0019304
name: sensory organ epithelium
namespace: uberon
xref: EMAPA:35952
xref: MA:0003174
relationship: part_of UBERON:0000020 ! sense organ

[Term]
id: UBERON:0019306
name: nose epithelium
namespace: uberon
xref: EMAPA:35958
xref: MA:0003171
is_a: UBERON:0019304 ! sensory organ epithelium
relationship: part_of UBERON:0000004 ! nose

[Term]
id: UBERON:0019307
name: epithelium of external nose
namespace: uberon
def: "Epithelial layer that is part of the external part of the nose." [http://orcid.org/0000-0002-6601-2165]
synonym: "epithelium of skin of external nose" EXACT [FMA:63143]
xref: FMA:63143
is_a: UBERON:0019306 ! nose epithelium
relationship: part_of UBERON:0007827 ! external nose

[Term]
id: UBERON:0019315
name: meibum
namespace: uberon
def: "an oily substance that prevents evaporation of the eye's tear film" [PMID:20664693]
synonym: "tarsal gland secretion" RELATED []
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0000019 ! camera-type eye
property_value: UBPROP:0000009 "provides barrier to prevent dessication of cornea[ISBN:0123813611]" xsd:string
property_value: UBPROP:0000015 "part of surface lipid layer of tear film" xsd:string

[Term]
id: UBERON:0019324
name: intraorbital lacrimal gland
namespace: uberon
def: "A lacrimal gland located superficially at the lateral canthus, where both the lacrimal gland and Harderian gland ducts open." [ISBN:0123813611, MGI:anna]
xref: EMAPA:36578
xref: MA:0003109
xref: NCIT:C60574
xref: UMLS:C1882706
is_a: UBERON:0001817 {source="MA"} ! lacrimal gland
property_value: RO:0002161 NCBITaxon:9606

[Term]
id: UBERON:0019325
name: exorbital lacrimal gland
namespace: uberon
def: "A lacrimal gland located subcutaneously at the anteroventral base of the ear adjacent to the parotid gland." [ISBN:0123813611, MGI:anna]
synonym: "exorbital gland" RELATED []
synonym: "exorbital lacrimal gland" EXACT [MGI:anna]
synonym: "extraorbital gland" RELATED []
synonym: "extraorbital lacrimal gland" RELATED []
xref: EMAPA:36577
xref: MA:0003110
xref: NCIT:C60564
xref: UMLS:C1882664
is_a: UBERON:0001817 {source="MA"} ! lacrimal gland
property_value: RO:0002161 NCBITaxon:9606
property_value: UBPROP:0000008 "more than 10% of rat exorbital gland appears to be composed of harderian gland-like cells by 22 months of age (Coujard 1974; Sashima et al. 1989).[PMID:7559104]" xsd:string

[Term]
id: UBERON:0022273
name: lacrimal lake
namespace: uberon
def: "A small cistern-like area of the conjunctiva at the medial angle of the eye, in which the tears collect after bathing the front surface of the eyeball and the conjunctival sac." [MGI:anna]
synonym: "lacrymal lake" EXACT [MGI:anna]
synonym: "lacus lacrimalis" EXACT LATIN []
xref: FMA:59402
xref: SCTID:368792002
xref: Wikipedia:Lacrimal_lake
relationship: part_of UBERON:0001811 ! conjunctiva

[Term]
id: UBERON:0022274
name: lacrimal papilla
namespace: uberon
def: "A small conical elevation at the basal angle of the lacrimal lake." [Wikipedia:Lacrimal_papilla]
synonym: "papilla lacrimalis" EXACT LATIN [Wikipedia:Lacrimal_papilla]
xref: FMA:59407
xref: SCTID:362533003
xref: Wikipedia:Lacrimal_papilla
relationship: part_of UBERON:0001850 ! lacrimal drainage system

[Term]
id: UBERON:0022279
name: strand of hair on external ear
namespace: uberon
synonym: "hair of external ear" EXACT [FMA:53671]
synonym: "hair of tragus" EXACT [FMA:53671]
synonym: "tragus hair" EXACT [FMA:53671]
xref: FMA:53671
relationship: part_of UBERON:0001691 ! external ear

[Term]
id: UBERON:0022284
name: lacrimal gland bud
namespace: uberon
def: "the single bud-like invagination of the conjunctival fornix epithelium at the temporal aspect of the eye that signals lacrimal gland formation (Int Rev Cytol. 1996;168:1-80. Cell biology of the harderian gland)" [MGI:anna]
xref: EMAPA:35464
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001750 ! lacrimal apparatus
property_value: UBPROP:0000008 "in mouse, the primary bud arises around E13.5 and extends caudally into the surrounding neural-crest derived periocular mesenchyme; between E15.5 and E16.5 the bud undergoes branching morphogenesis, forming both a major extra-orbital lobe and a minor intraorbital lobe" xsd:string

[Term]
id: UBERON:0022287
name: tear film
namespace: uberon
def: "An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet." [http://orcid.org/0000-0002-6601-2165]
synonym: "precorneal film" EXACT [MGI:anna]
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
relationship: part_of UBERON:0010409 ! ocular surface region
property_value: UBPROP:0000001 "the thin acellular fluid layer that adheres to the most superficial layer of the corneal epithelium and lubricates and protects the ocular surface; the film is generally composed of three layers: (i) an inner mucous layer, secreted largely by the conjunctival goblet cells with contributions from the lacrimal glands, which coats the cornea, provides a hydrophobic layer, and allows for even distribution of the tear film; (ii) a middle aqueous layer, secreted by the lacrimal glands, which keeps the corneal surface moist, and provides a mechanism for oxygenation and nutrient exchange with the avascular anterior corneal tissue; and (iii) an outer lipid layer, secreted principally by the Meibomian (tarsal) glands although lipid tear elements also are contributed by the Harderian glands; tear film lipids form a monolayer on the tear surface, and function by enhancing the surface tension which supports the integrity of the tear film against collapse due to gravity and also slows down the loss of the tear film by evaporation; in addition , the lipid layer provides a glassy, smooth interface between the air and the transparent cornea" xsd:string {source="MGI:anna"}
property_value: UBPROP:0000009 "maintenance of the avascular transparent corneal epithelium" xsd:string
property_value: UBPROP:0000010 "The tear film is structurally complex with three distinct layers: a surface lipid layer, a middle aqueous layer, and an inner mucus layer[http://physiologyonline.physiology.org/content/13/2/97]" xsd:string

[Term]
id: UBERON:0022288
name: surface of eyeball
namespace: uberon
synonym: "surface of region of wall of eyeball" RELATED [FMA:58315]
xref: FMA:58315
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0010230 ! eyeball of camera-type eye

[Term]
id: UBERON:0022434
name: primary superior olive
namespace: uberon
def: "Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus." [BIRNLEX:900]
synonym: "superior olive" BROAD INCONSISTENT [BIRNLEX:900]
xref: BAMS:SOl
xref: BIRNLEX:900
xref: DHBA:12468
xref: HBA:9182
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=570
xref: UMLS:C0228444
relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex
property_value: UBPROP:0000012 "Wikipedia includes Medial nucleus of the trapezoid body. Wikipedia:Superior_olivary_complex#Primary_nuclei" xsd:string
property_value: UBPROP:0000013 "many sources refer to this simply as the 'superior olive' or the 'superior olivary nucleus'. However, this is confusing as superior olive is sometimes used to denote the full SOC, which includes periolvary nuclei[https://github.com/obophenotype/uberon/issues/631]" xsd:string

[Term]
id: UBERON:0022437
name: dorsal periolivary nucleus
namespace: uberon
def: "." [Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29]
synonym: "DPeO" RELATED ABBREVIATION [DMBA:17260]
synonym: "DPO" RELATED ABBREVIATION []
synonym: "nuclei periolivares" BROAD LATIN [FMA:TA]
synonym: "peri-olivary nuclei" BROAD [FMA:72475]
xref: DHBA:15561
xref: DMBA:17260
xref: FMA:72475
is_a: UBERON:0007247 ! nucleus of superior olivary complex
relationship: part_of UBERON:0002128 {source="FMA"} ! superior olivary complex
relationship: part_of UBERON:0002971 {source="Wikipedia"} ! periolivary nucleus

[Term]
id: UBERON:0023094
name: posterodorsal nucleus of medial geniculate body
namespace: uberon
synonym: "nucleus corporis geniculati medialis, pars posterodorsalis" RELATED [BIRNLEX:1622]
synonym: "posterodorsal nucleus of medial geniculate body" EXACT HUMAN_PREFERRED [BIRNLEX:1622]
synonym: "posterodorsal nucleus of medial geniculate body" EXACT [BIRNLEX:1622]
synonym: "posterodorsal nucleus of medial geniculate complex" RELATED [BIRNLEX:1622]
xref: BIRNLEX:1622
xref: HBA:4447
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=851
relationship: part_of UBERON:0001927 {source="NIFSTD"} ! medial geniculate body

[Term]
id: UBERON:0023541
name: conical papilla
namespace: uberon
synonym: "conical papilla" EXACT [BIRNLEX:4103]
synonym: "conical papilla" EXACT HUMAN_PREFERRED [BIRNLEX:4103]
xref: BIRNLEX:4103
xref: UMLS:C0226967
xref: UMLS:C1289183
is_a: UBERON:0001726 {source="NIFSTD"} ! papilla of tongue

[Term]
id: UBERON:0028194
name: spiral prominence of cochlear duct
namespace: uberon
def: "a projecting portion of the spiral ligament of the cochlea, bounding the lower edge of the stria vascularis and containing within it a blood vessel, the vas prominens." [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct]
synonym: "prominentia spiralis ductus cochlearis" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/spiral+prominence+of+cochlear+duct]
synonym: "spiral prominence" BROAD [EMAPA:35799, MA:0003003]
synonym: "spiral prominence of cochlea" EXACT HUMAN_PREFERRED [BIRNLEX:2532]
synonym: "spiral prominence of cochlea" EXACT [BIRNLEX:2532]
synonym: "spiral prominence of cochlear duct" EXACT [FMA:77833]
xref: BIRNLEX:2532
xref: EMAPA:35799
xref: FMA:77833
xref: MA:0003003
xref: SCTID:279843007
relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth

[Term]
id: UBERON:0034670
name: palatal taste bud
namespace: uberon
def: "A taste bud that is located on the soft palate, in the roof of the mouth." [DOI:10.1523/JNEUROSCI.5142-05.2006, http://orcid.org/0000-0002-6601-2165]
synonym: "taste bud of palate" EXACT []
is_a: UBERON:0034722 ! mouth roof taste bud
property_value: UBPROP:0000008 "In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006]" xsd:string

[Term]
id: UBERON:0034717
name: integumental taste bud
namespace: uberon
def: "A taste bud that is located external to the digestive tube, on the head or body, as found in species such as goldfish." [http://orcid.org/0000-0002-6601-2165, PMID:11921337]
is_a: UBERON:0001727 ! taste bud

[Term]
id: UBERON:0034718
name: barbel taste bud
namespace: uberon
def: "A taste bud that is located on a barbel." [http://orcid.org/0000-0002-6601-2165, PMID:11921337]
is_a: UBERON:0034717 ! integumental taste bud

[Term]
id: UBERON:0034719
name: lip taste bud
namespace: uberon
def: "A taste bud that is located on a lip." [http://orcid.org/0000-0002-6601-2165, PMID:11921337]
is_a: UBERON:0034717 ! integumental taste bud
property_value: RO:0002175 NCBITaxon:32443

[Term]
id: UBERON:0034720
name: head taste bud
namespace: uberon
def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0034717 ! integumental taste bud

[Term]
id: UBERON:0034721
name: pharyngeal taste bud
namespace: uberon
def: "A taste bud that is located in the pharynx." [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0001727 ! taste bud
property_value: RO:0002175 NCBITaxon:7778

[Term]
id: UBERON:0034722
name: mouth roof taste bud
namespace: uberon
def: "A taste bud that is located on the roof of the mouth." [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0001727 ! taste bud
property_value: RO:0002175 NCBITaxon:7778

[Term]
id: UBERON:0034723
name: fin taste bud
namespace: uberon
def: "A taste bud that is located on a fin." [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0001727 ! taste bud
property_value: RO:0002175 NCBITaxon:32443

[Term]
id: UBERON:0034724
name: esophageal taste bud
namespace: uberon
def: "A taste bud that is located in the esophagus." [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0001727 ! taste bud
property_value: RO:0002175 NCBITaxon:32443

[Term]
id: UBERON:0034726
name: trunk taste bud
namespace: uberon
def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0034717 ! integumental taste bud

[Term]
id: UBERON:0034772
name: margin of eyelid
namespace: uberon
def: "the confluence of the mucosal surface of the conjunctiva, the edge of the orbicularis, and the cutaneous epithelium." [MGI:anna]
synonym: "free margin of eyelid" EXACT []
xref: EMAPA:37905 {source="MA:th"}
xref: FMA:59356
xref: SCTID:362527007
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0034934
name: Weber's gland
namespace: uberon
def: "One of the lingual glands located on the lateral margins of the tongue, at the level of the foliate papillae and in the root of the tongue behind the circumvallate papillae." [MGI:anna, PMCID:PMC2667924]
synonym: "gland of Weber" EXACT []
synonym: "posterior superficial lingual gland" EXACT [MGI:anna]
is_a: UBERON:0003409 ! gland of tongue
relationship: part_of UBERON:0001723 ! tongue
property_value: UBPROP:0000008 "in humans, the ducts of posterior superficial lingual glands open into the crypts of lingual tonsils; mucous supplied by these glands may help to cleanse the crypts and aid in deglutition" xsd:string

[Term]
id: UBERON:0034935
name: pars plicata of ciliary body
namespace: uberon
def: "Corrugated anterior region of ciliary body where ciliary processes arise" [http://orcid.org/0000-0002-6601-2165]
synonym: "ciliary crown" EXACT [FMA:58431]
synonym: "corona ciliaris" EXACT [FMA:58431]
xref: FMA:58431
xref: SCTID:280859006
relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body

[Term]
id: UBERON:0034936
name: pars plana of ciliary body
namespace: uberon
def: "Flattened posterior region of ciliary body" [http://orcid.org/0000-0002-6601-2165]
synonym: "ciliary ring" EXACT [FMA:58480]
synonym: "orbiculus ciliaris" EXACT [FMA:58480]
xref: FMA:58480
xref: NCIT:C33219
xref: SCTID:368830002
relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body

[Term]
id: UBERON:0035034
name: eyelid epithelium
namespace: uberon
def: "An epithelium that is part of an eyelid [Automatically generated definition]." [OBOL:automatic]
xref: EMAPA:32758
xref: MA:0003163
is_a: UBERON:0015808 ! eye epithelium
relationship: part_of UBERON:0001711 ! eyelid

[Term]
id: UBERON:0035036
name: naris epithelium
namespace: uberon
def: "An epithelium that is part of a naris [Automatically generated definition]." [OBOL:automatic]
xref: EMAPA:35959
xref: MA:0003172
relationship: part_of UBERON:0000003 ! naris

[Term]
id: UBERON:0035077
name: lateral nasal gland
namespace: uberon
def: "Any of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those described for the major serous salivary glands; secretory contents of the LNG drain into the nasal vestibule; the LNG is a major site for the synthesis and secretion of odorant-binding proteins that serve as odorant carriers in nasal mucus; it also, synthesizes large amounts of immunoglobulin A, which is important for immune defense of the upper respiratory tract, and testosterone and salivary androgen-binding proteins, which are likely important in olfaction and reproductive behavior" [MP:0013582]
synonym: "glandula nasalis lateralis" EXACT LATIN [MP:0013582]
synonym: "LNG" RELATED ABBREVIATION [MP:0013582]
synonym: "Steno gland" EXACT [MP:0013582]
synonym: "Steno's gland" EXACT [MP:0013582]
xref: EMAPA:37894 {source="MA:th"}
is_a: UBERON:0012278 ! gland of nasal mucosa

[Term]
id: UBERON:0035130
name: auditory ossicle endochondral element
namespace: uberon
synonym: "auditory skeletal element" EXACT []
synonym: "ear ossicle element" RELATED []
synonym: "ear ossicles element" RELATED PLURAL []
synonym: "middle ear ossicle element" EXACT [MP:0005105]
synonym: "middle ear skeletal element" RELATED []
synonym: "ossicle element" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle]
synonym: "ossicle element of ear" RELATED []
synonym: "ossicle element of inner ear" RELATED []
synonym: "ossicular chain element" RELATED PLURAL []
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear

[Term]
id: UBERON:0035131
name: auditory ossicle cartilage element
namespace: uberon
synonym: "ossicle cartilage condensation" EXACT [EMAPA:35979]
xref: EMAPA:35979
is_a: UBERON:0035130 ! auditory ossicle endochondral element

[Term]
id: UBERON:0035132
name: auditory ossicle pre-cartilage element
namespace: uberon
synonym: "ossicle pre-cartilage condensation" EXACT [EMAPA:35982]
xref: EMAPA:35982
is_a: UBERON:0035130 ! auditory ossicle endochondral element

[Term]
id: UBERON:0035174
name: right ear
namespace: uberon
def: "The organ of hearing located on the right side of the head." [ncithesaurus:Right_Ear]
xref: FMA:53641
xref: NCIT:C81285
xref: SCTID:368570004
xref: UMLS:C0229298
is_a: UBERON:0001690 ! ear

[Term]
id: UBERON:0035295
name: left ear
namespace: uberon
def: "The organ of hearing located on the left side of the head[ncit,modified]." [http://orcid.org/0000-0002-6601-2165, ncithesaurus:Left_Ear]
xref: FMA:53642
xref: NCIT:C81259
xref: SCTID:368592000
xref: UMLS:C0229299
is_a: UBERON:0001690 ! ear

[Term]
id: UBERON:0035555
name: lateral line sense organ
namespace: uberon
is_a: UBERON:0010521 ! electroreceptor organ
relationship: part_of UBERON:0002540 ! lateral line system
property_value: IAO:0000116 "ensure pit organ classifies here" xsd:string

[Term]
id: UBERON:0035570
name: tectothalamic tract
namespace: uberon
synonym: "tectothalamic fibers" EXACT [NeuroNames:1424]
synonym: "tectothalamic fibers" RELATED [NeuroNames:1424]
synonym: "tectothalamic pathway" RELATED [NeuroNames:1424]
synonym: "tectothalamic tract" RELATED [NeuroNames:1424]
synonym: "ttp" RELATED ABBREVIATION [MBA:357]
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1424
xref: MBA:357
relationship: part_of UBERON:0001908 ! optic tract

[Term]
id: UBERON:0035594
name: accessory optic system
namespace: uberon
def: "Subdivision of visual system that processes movements of images across retina and regulates the movement of eyes to keep the image stable." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893]
relationship: part_of UBERON:0002104 ! visual system

[Term]
id: UBERON:0035595
name: accessory optic tract
namespace: uberon
synonym: "accessory optic fibers" RELATED []
synonym: "aot" RELATED ABBREVIATION [MBA:876]
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1189
xref: MBA:876
relationship: part_of UBERON:0001908 ! optic tract
relationship: part_of UBERON:0035594 ! accessory optic system

[Term]
id: UBERON:0035606
name: cartilage of external acoustic meatus
namespace: uberon
synonym: "cartilage of acoustic meatus" EXACT [FMA:61298]
synonym: "cartilage of auditory canal" EXACT [FMA:61298]
synonym: "cartilago meatus acustici" EXACT [FMA:TA]
synonym: "external acoustic meatus cartilage" EXACT [FMA:61298]
xref: FMA:61298
relationship: part_of UBERON:0001352 ! external acoustic meatus
relationship: part_of UBERON:0001867 ! cartilage of external ear

[Term]
id: UBERON:0035806
name: Hensen stripe
namespace: uberon
def: "The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells." [MGI:anna]
synonym: "Hensen's stripe" EXACT [MGI:anna]
relationship: part_of UBERON:0001855 {source="cjm"} ! cochlear duct of membranous labyrinth
property_value: UBPROP:0000010 "Hensen's stripe is continuous with a more external homogeneous basal layer, from which a marginal band of an amorphous substance originates; the marginal net extends from the marginal band and attaches the lateral border of the TM to Hensen's cells of the organ of Corti. Hensen's stripe and the homogeneous basal layers display interruptions through which the fibrillar structure of the TM is visible" xsd:string

[Term]
id: UBERON:0035930
name: retro-olivary nucleus
namespace: uberon
synonym: "nucleus retro-olivaris" EXACT LATIN [FMA:TA]
synonym: "retro-olivary cell group" EXACT [FMA:72476]
synonym: "RO" RELATED ABBREVIATION [DHBA:12467]
xref: DHBA:12467
xref: FMA:72476
xref: HBA:9181
xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=575
is_a: UBERON:0007247 {source="FMA"} ! nucleus of superior olivary complex

[Term]
id: UBERON:0035941
name: Kimura membrane
namespace: uberon
def: "The thickening of the lower surface of the tectorial membrane into which the hair bundles of the outer hair cells are embedded." [https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2141, https://github.com/obophenotype/uberon/issues/1200, MGI:smith, PMID:18797289]
relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea

[Term]
id: UBERON:0035964
name: promontory of tympanic cavity
namespace: uberon
def: "The promontory of the tympanic cavity, better known as the cochlear promontory is a rounded hollow prominence, formed by the projection outward of the first turn of the cochlea. It is placed between the fenestrae, and is furrowed on its surface by small grooves, for the lodgement of branches of the tympanic plexus. A minute spicule of bone frequently connects the promontory to the pyramidal eminence." [Wikipedia:Promontory_of_tympanic_cavity]
synonym: "promontorium" RELATED [Wikipedia:Promontory_of_tympanic_cavity]
synonym: "promontorium tympani" EXACT LATIN [FMA:TA]
synonym: "promontory of the tympanic cavity" RELATED [Wikipedia:Promontory_of_tympanic_cavity]
synonym: "tympanic cavity promontory" EXACT [FMA:77694]
xref: BTO:0003089
xref: FMA:77694
xref: Wikipedia:Promontory_of_tympanic_cavity
relationship: part_of UBERON:0001756 ! middle ear

[Term]
id: UBERON:0035966
name: scleral lamina cribrosa
namespace: uberon
def: "The perforated part of the sclera through which pass the axons of the retinal ganglion cells." [BTO:0004277, Dorlands_Medical_Dictionary:MerckSource]
synonym: "lamina cribrosa of sclera" EXACT [FMA:58371]
synonym: "lamina cribrosa of sclera" RELATED [BTO:0004277]
synonym: "lamina cribrosa sclerae" EXACT LATIN [FMA:TA]
xref: BTO:0004277
xref: FMA:58371
xref: SCTID:281086001
relationship: part_of UBERON:0001773 {source="BTO"} ! sclera

[Term]
id: UBERON:0036167
name: Sattler's layer
namespace: uberon
def: "Sattler's layer is layer of medium diameter blood vessels of the choroid." [Wikipedia:Sattler%27s_layer]
comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin.
xref: Wikipedia:Sattler%27s_layer
relationship: part_of UBERON:0013399 ! blood vessel layer of choroid

[Term]
id: UBERON:0036168
name: Haller's layer
namespace: uberon
comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin.
relationship: part_of UBERON:0013399 ! blood vessel layer of choroid

[Term]
id: UBERON:0036212
name: intertragic incisure
namespace: uberon
def: "A surface structure that is the narrowed downward continuation of the conchal space bounded anteriorly by the borders of the tragus, posteriorly by theantitragus, and along its lower lateral margins and inferior boundary by the connection between the first two." [https://github.com/obophenotype/human-phenotype-ontology/issues/2274, PMID:20082456, UBERON:cjm, Wikipedia:Incisura_anterior_auris]
comment: Measurement notes: The length is measured from the upper to the lower border (between tragus and antitragus)
synonym: "anterior auricular groove" RELATED [Wikipedia:Incisura_anterior_auris]
synonym: "auricular notch" RELATED [Wikipedia:Incisura_anterior_auris]
synonym: "incisura" BROAD [https://github.com/obophenotype/human-phenotype-ontology/issues/2274]
synonym: "incisura anterior auris" RELATED [Wikipedia:Incisura_anterior_auris]
synonym: "incisura intertragica" EXACT LATIN [FMA:TA]
synonym: "intertragal incisure" EXACT [FMA:61175]
synonym: "intertragic incisure" EXACT [FMA:61175]
synonym: "intertragic incisure" RELATED [Wikipedia:Incisura_anterior_auris]
synonym: "intertragic notch" EXACT [FMA:61175]
synonym: "sulcus auriculae anterior" RELATED [Wikipedia:Incisura_anterior_auris]
xref: FMA:61175
xref: SCTID:362542005
xref: Wikipedia:Incisura_anterior_auris
relationship: part_of UBERON:0001757 ! pinna

[Term]
id: UBERON:0036249
name: zona pectinata of basilar membrane of cochlea
namespace: uberon
def: "The acellular membrane that forms the outer two thirds of the basilar membrane of the conchlea." [http://medical-dictionary.thefreedictionary.com/zona+pectinata, https://github.com/obophenotype/uberon/issues/1357]
synonym: "pectinate zone" BROAD []
synonym: "pectinate zone of basilar membrane" EXACT []
synonym: "pectinate zone of organ of corti" EXACT []
synonym: "zona pectinata" BROAD []
xref: BIRNLEX:2529
xref: FMA:75710
xref: SCTID:368962003
xref: UMLS:C1184863
is_a: UBERON:0036250 ! zone of basilar membrane of cochlea
relationship: part_of UBERON:0002226 ! basilar membrane of cochlea

[Term]
id: UBERON:0036250
name: zone of basilar membrane of cochlea
namespace: uberon
synonym: "zone of organ of corti" RELATED []
xref: SCTID:361065006
relationship: part_of UBERON:0002226 ! basilar membrane of cochlea

[Term]
id: UBERON:0036254
name: piriform aperture
namespace: uberon
def: "A pear-shaped bony inlet comprising the most anterior and narrowest bony portion of the nasal airway." [MGI:anna, PMID:17082934, Wikipedia:Anterior_nasal_aperture]
synonym: "apertura piriformis" EXACT LATIN [FMA:TA]
synonym: "apertura piriformis" RELATED [Wikipedia:Anterior_nasal_aperture]
synonym: "piriform aperture" RELATED [Wikipedia:Anterior_nasal_aperture]
synonym: "pyriform aperture" RELATED [Wikipedia:Anterior_nasal_aperture]
xref: FMA:53137
xref: Wikipedia:Anterior_nasal_aperture
relationship: part_of UBERON:0006813 ! nasal skeleton

[Term]
id: UBERON:0036255
name: interoceptive system
namespace: uberon
def: "The system that is responsible for sensing the internal state of the body." [https://github.com/obophenotype/uberon/issues/1385, Wikipedia:Interoception]
xref: Wikipedia:Interoception
is_a: UBERON:0001032 ! sensory system

[Term]
id: UBERON:0036265
name: conjunctival papilla
namespace: uberon
synonym: "conjunctival papillae" EXACT PLURAL []
xref: SCTID:280681004
relationship: part_of UBERON:0001811 ! conjunctiva

[Term]
id: UBERON:0036300
name: tributary of central retinal vein
namespace: uberon
synonym: "central retinal venous tributary" EXACT [FMA:51892]
xref: FMA:51892
xref: SCTID:731368004
relationship: part_of UBERON:0001673 ! central retinal vein

[Term]
id: UBERON:0036925
name: wall of eyeball
namespace: uberon
synonym: "eyeball wall" EXACT [FMA:58098]
xref: FMA:58098
relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye

[Term]
id: UBERON:0036990
name: wall of pharyngotympanic tube
namespace: uberon
synonym: "pharyngotympanic tube wall" EXACT [FMA:60069]
xref: FMA:60069
relationship: part_of UBERON:0002393 {source="FMA"} ! pharyngotympanic tube

[Term]
id: UBERON:0037191
name: wall of membranous labyrinth
namespace: uberon
synonym: "membranous labyrinth wall" EXACT [FMA:79837]
xref: FMA:79837
relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth

[Term]
id: UBERON:0037237
name: wall of lacrimal duct
namespace: uberon
synonym: "lacrimal ductal wall" EXACT [FMA:85375]
xref: FMA:85375
relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system

[Term]
id: UBERON:1000004
name: collection of hair on external ear
namespace: uberon
def: "A collection of hairs that grows on the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
subset: phenotype_rcn
synonym: "external ear hair" RELATED []
relationship: part_of UBERON:0001691 ! external ear
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger

[Term]
id: UBERON:1000005
name: external ear margin
namespace: uberon
def: "Anatomical junction consisting of the area along the edge of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
subset: phenotype_rcn
relationship: part_of UBERON:0001691 ! external ear
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger

[Term]
id: UBERON:1000012
name: nose anterior margin
namespace: uberon
def: "Subdivision of the head consisting of the area along the front edge of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
subset: phenotype_rcn
relationship: part_of UBERON:0007827 ! external nose
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger

[Term]
id: UBERON:1000013
name: nose vertex
namespace: uberon
def: "The extreme point of curvature of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
subset: phenotype_rcn
relationship: part_of UBERON:0007827 ! external nose
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger

[Term]
id: UBERON:1000017
name: tip of external ear
namespace: uberon
def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS]
subset: phenotype_rcn
relationship: part_of UBERON:0001691 ! external ear
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall
property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger

[Term]
id: UBERON:1000022
name: Zymbal's gland
namespace: uberon
def: "A multilobulated modified sebaceous gland that is located at the base of the external ear, lined by stratified squamous epithelium, and secretes into the auditory canal" [http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html, ISBN:0123813611, MP:0013384]
synonym: "auditory sebaceous gland" RELATED [ISBN:0123813611]
synonym: "gland of Zymbal" RELATED []
synonym: "Zymbal gland" RELATED [MA:0002900]
xref: EMAPA:37808 {source="MA:th"}
xref: MA:0002900
xref: NCIT:C77954
xref: SCTID:105587007
xref: UMLS:C0687056 {source="ncithesaurus:Zymbal_Gland"}
relationship: part_of UBERON:0001691 {source="cjm"} ! external ear
property_value: UBPROP:0000010 "Zymbal's glands are located beneath squamous epithelium at the anterior and posterior aspect of the ear canal, and as a single external gland that is located anterior and ventral to the base of the external ear canal. The bilateral Zymbal's glands are adjacent to the auditory canal and are made up of several lobules of modified sebaceous glands - http://ratguide.com/health/neoplasia/zymbals_gland_tumor.php." xsd:string
property_value: UBPROP:0000015 "located anterior and ventral to the exterior ear canal in rodents[MP:0013384]" xsd:string

[Term]
id: UBERON:1500003
name: lateral line canal lumen
namespace: uberon
def: "Anatomical space that contains a portion of the lateral line system." [PHENOSCAPE] {comment="PHENOSCAPE:MAH"}
comment: TO DO: think about definitions for spaces in bone, in which pass through nerves, muscles, tendons and are defined by them.
relationship: part_of UBERON:0002540 ! lateral line system

[Term]
id: UBERON:2000116
name: macula lagena
namespace: uberon
xref: ZFA:0000116
is_a: UBERON:0000054 ! macula
relationship: part_of UBERON:0002518 ! otolith organ
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000120
name: lateral line ganglion
namespace: uberon
def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFA:0000120, ZFA:curator]
subset: efo_slim
synonym: "lateral line ganglia" EXACT PLURAL [TAO:0000120]
synonym: "LLG" EXACT ABBREVIATION [TAO:0000120]
xref: EFO:0003493
xref: TAO:0000120
xref: XAO:0004457
xref: ZFA:0000120
relationship: part_of UBERON:0002540 ! lateral line system

[Term]
id: UBERON:2000125
name: mandibular lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
synonym: "neuromast mandibular" EXACT [TAO:0000125]
synonym: "neuromasts mandibular" EXACT PLURAL [TAO:0000125]
xref: ZFA:0000125
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:2000259 ! mandibular lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000136
name: otic lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
synonym: "neuromast otic" EXACT [TAO:0000136]
synonym: "neuromasts otic" EXACT PLURAL [TAO:0000136]
xref: ZFA:0000136
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:2000464 ! otic lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000168
name: anterior macula
namespace: uberon
def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator]
synonym: "am" EXACT [TAO:0000168]
xref: ZFA:0000168
is_a: UBERON:0000054 ! macula
relationship: part_of UBERON:0002518 ! otolith organ
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000175
name: posterior lateral line nerve
namespace: uberon
def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:curator]
synonym: "caudal lateral line nerve" EXACT [TAO:0000175]
xref: ZFA:0000175
is_a: UBERON:0008906 ! lateral line nerve
relationship: part_of UBERON:2001471 ! posterior lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000225
name: lateral crista primordium
namespace: uberon
synonym: "lateral crista primordia" EXACT PLURAL [TAO:0000225]
xref: ZFA:0000225
is_a: UBERON:0003240 ! epithelium of lateral semicircular canal
is_a: UBERON:0003249 ! epithelium of otic placode
relationship: part_of UBERON:0001843 ! lateral semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000228
name: lateral line primordium
namespace: uberon
synonym: "lateral line primordia" EXACT PLURAL [TAO:0000228]
synonym: "llp" EXACT [TAO:0000228]
xref: ZFA:0000228
relationship: part_of UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000232
name: lateral semicircular canal primordium
namespace: uberon
synonym: "lateral semicircular canal primordia" EXACT PLURAL [TAO:0000232]
xref: ZFA:0000232
relationship: part_of UBERON:0001840 ! semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000234
name: macula neglecta
namespace: uberon
def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234]
xref: ZFA:0000234
is_a: UBERON:0000054 ! macula
relationship: part_of UBERON:0002518 ! otolith organ
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000259
name: mandibular lateral line
namespace: uberon
def: "One of eight distinct lateral lines in the 4-day larva consisting of 2 neuromast. One neuromast is positioned at the front edge of the jaw the second posteriorly on the mandible. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
xref: ZFA:0000259
is_a: UBERON:2001470 ! anterior lateral line
relationship: part_of UBERON:2001470 ! anterior lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000315
name: asteriscus
namespace: uberon
synonym: "lagenar otolith" EXACT [TAO:0000315]
synonym: "lagenolith" EXACT [TAO:0000315]
xref: ZFA:0000315
is_a: UBERON:0002280 ! otolith
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000411
name: posterior crista primordium
namespace: uberon
synonym: "posterior crista primordia" EXACT PLURAL [TAO:0000411]
xref: ZFA:0000411
is_a: UBERON:0003239 ! epithelium of posterior semicircular canal
is_a: UBERON:0003249 ! epithelium of otic placode
relationship: part_of UBERON:0001842 ! posterior semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000412
name: posterior semicircular canal primordium
namespace: uberon
synonym: "posterior semicircular canal primordia" EXACT PLURAL [TAO:0000412]
xref: ZFA:0000412
relationship: part_of UBERON:0001840 ! semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000424
name: opercular lateral line
namespace: uberon
def: "One of eight distinct lateral lines in the 4-day larva positioned posteriorly to the second arch skeletal element. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
xref: ZFA:0000424
is_a: UBERON:2001470 ! anterior lateral line
relationship: part_of UBERON:2001470 ! anterior lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000425
name: anterior lateral line nerve
namespace: uberon
def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [ZFIN:curator]
synonym: "rostral lateral line nerve" EXACT [TAO:0000425]
xref: ZFA:0000425
is_a: UBERON:0008906 ! lateral line nerve
relationship: part_of UBERON:2001468 ! anterior lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000464
name: otic lateral line
namespace: uberon
def: "One of eight distinct lateral lines in the 4-day larva positioned anterior to the ear. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
xref: ZFA:0000464
is_a: UBERON:2001470 ! anterior lateral line
relationship: part_of UBERON:2001470 ! anterior lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000469
name: anterior semicircular canal primordium
namespace: uberon
synonym: "anterior semicircular canal primordia" EXACT PLURAL [TAO:0000469]
xref: ZFA:0000469
relationship: part_of UBERON:0001840 ! semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000530
name: lapillus
namespace: uberon
synonym: "utricular otolith" EXACT [TAO:0000530]
synonym: "utriculith" EXACT [TAO:0000530]
xref: ZFA:0000530
is_a: UBERON:0002280 ! otolith
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000558
name: posterior macula
namespace: uberon
def: "Macula that is located in the developing posterior inner ear, and gives rise to the macula neglecta and the macula saccule. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator]
synonym: "pm" EXACT [TAO:0000558]
synonym: "posteromedial macula" EXACT [TAO:0000558]
xref: ZFA:0000558
is_a: UBERON:0000054 ! macula
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000676
name: sagitta
namespace: uberon
synonym: "saccular otolith" EXACT [TAO:0000676]
synonym: "sacculith" EXACT [TAO:0000676]
xref: ZFA:0000676
is_a: UBERON:0002280 ! otolith
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000813
name: infraorbital lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
synonym: "neuromast infraorbital" EXACT [TAO:0000813]
synonym: "neuromasts infraorbital" EXACT PLURAL [TAO:0000813]
xref: ZFA:0000813
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:0003094 ! infraorbital lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000814
name: opercular lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
synonym: "neuromast opercular" EXACT [TAO:0000814]
synonym: "neuromasts opercular" EXACT PLURAL [TAO:0000814]
xref: ZFA:0000814
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:2000424 ! opercular lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2000939
name: middle lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
subset: efo_slim
synonym: "neuromast middle" EXACT [TAO:0000939]
synonym: "neuromasts middle" EXACT PLURAL [TAO:0000939]
xref: EFO:0003592
xref: TAO:0000939
xref: ZFA:0000939
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:0003096 ! middle lateral line

[Term]
id: UBERON:2000940
name: posterior lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
synonym: "neuromast posterior" EXACT [TAO:0000940]
synonym: "neuromasts posterior" EXACT PLURAL [TAO:0000940]
xref: ZFA:0000940
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:0006334 ! posterior lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001025
name: occipital lateral line neuromast
namespace: uberon
def: "A neuromast that is part of the occipital lateral line." [ZFIN:curator]
subset: efo_slim
synonym: "neuromast occipital" EXACT [TAO:0001025]
synonym: "neuromasts occipital" EXACT PLURAL [TAO:0001025]
xref: EFO:0003606
xref: TAO:0001025
xref: ZFA:0001025
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:0003093 ! occipital lateral line

[Term]
id: UBERON:2001026
name: supraorbital lateral line neuromast
namespace: uberon
def: "A neuromast that is part of the supraorbital lateral line." [ZFIN:curator]
subset: efo_slim
synonym: "neuromast supraorbital" EXACT [TAO:0001026]
synonym: "neuromasts supraorbital" EXACT PLURAL [TAO:0001026]
xref: EFO:0003607
xref: TAO:0001026
xref: ZFA:0001026
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:0003090 ! supraorbital lateral line

[Term]
id: UBERON:2001156
name: posterior lateral line placode
namespace: uberon
xref: ZFA:0001156
relationship: part_of UBERON:2001471 ! posterior lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001157
name: posterior lateral line primordium
namespace: uberon
def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001." [ZFIN:curator]
synonym: "posterior lateral line primordia" EXACT PLURAL [TAO:0001157]
xref: ZFA:0001157
is_a: UBERON:2000228 ! lateral line primordium
relationship: part_of UBERON:2001471 ! posterior lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001312
name: dorsal anterior lateral line ganglion
namespace: uberon
subset: efo_slim
synonym: "anterodorsal lateral line ganglion" EXACT [TAO:0001312]
xref: EFO:0003674
xref: TAO:0001312
xref: ZFA:0001312
is_a: UBERON:2001391 ! anterior lateral line ganglion

[Term]
id: UBERON:2001313
name: ventral anterior lateral line ganglion
namespace: uberon
synonym: "anteroventral lateral line ganglion" EXACT [TAO:0001313]
xref: ZFA:0001313
is_a: UBERON:2001391 ! anterior lateral line ganglion
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001314
name: posterior lateral line ganglion
namespace: uberon
def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator]
xref: ZFA:0001314
is_a: UBERON:2000120 ! lateral line ganglion
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001316
name: anterior lateral line placode
namespace: uberon
def: "Dorsolateral placode that gives rise to the anterior lateral line." [ZFA:0001316, ZFA:curator]
subset: efo_slim
synonym: "anterior lateral line placodes" RELATED PLURAL [ZFA:0001316]
synonym: "pre-auditory lateral line placode" RELATED [XAO:0004221]
xref: EFO:0003461
xref: TAO:0001316
xref: XAO:0004221
xref: ZFA:0001316
relationship: part_of UBERON:2001468 ! anterior lateral line system
property_value: UBPROP:0000001 "Lateral line placode that gives rise to the anterior lateral line nerve[XAO:0004221, XAO:EJS]." xsd:string {source="XAO:EJS"}

[Term]
id: UBERON:2001391
name: anterior lateral line ganglion
namespace: uberon
def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator]
subset: efo_slim
synonym: "anterior lateral line ganglia" RELATED PLURAL [TAO:0001391]
xref: EFO:0003683
xref: TAO:0001391
xref: ZFA:0001391
is_a: UBERON:2000120 ! lateral line ganglion
relationship: part_of UBERON:2001468 ! anterior lateral line system

[Term]
id: UBERON:2001426
name: posterior naris
namespace: uberon
synonym: "posterior nostril" EXACT [TAO:0001426]
xref: ZFA:0001426
is_a: UBERON:0005928 ! external naris
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001427
name: anterior naris
namespace: uberon
synonym: "anterior nostril" EXACT [TAO:0001427]
xref: ZFA:0001427
is_a: UBERON:0005928 ! external naris
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001428
name: olfactory rosette
namespace: uberon
synonym: "nasal rosette" EXACT [TAO:0001428]
xref: ZFA:0001428
is_a: UBERON:0019306 ! nose epithelium
relationship: part_of UBERON:0000004 ! nose
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001432
name: anterior sclerotic bone
namespace: uberon
def: "Sclerotic bone that is located anterior to the eye." [TAO:wd]
xref: ZFA:0001432
is_a: UBERON:0010297 ! endochondral scleral ossicle
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001433
name: posterior sclerotic bone
namespace: uberon
def: "Sclerotic bone that is located posterior to the eye." [TAO:wd]
xref: ZFA:0001433
is_a: UBERON:0010297 ! endochondral scleral ossicle
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001468
name: anterior lateral line system
namespace: uberon
def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator]
subset: efo_slim
xref: EFO:0003691
xref: TAO:0001468
xref: ZFA:0001468
is_a: UBERON:0002540 ! lateral line system

[Term]
id: UBERON:2001470
name: anterior lateral line
namespace: uberon
def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [ZFIN:curator]
xref: TAO:0001470
xref: ZFA:0001470
is_a: UBERON:0010202 ! lateral line
relationship: part_of UBERON:2001468 ! anterior lateral line system

[Term]
id: UBERON:2001471
name: posterior lateral line system
namespace: uberon
def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator]
xref: ZFA:0001471
is_a: UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001472
name: anterior lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
synonym: "neuromast anterior" EXACT [TAO:0001472]
xref: ZFA:0001472
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:2001470 ! anterior lateral line
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001480
name: dorsal anterior lateral line nerve
namespace: uberon
def: "Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts." [ZFIN:curator]
xref: ZFA:0001480
is_a: UBERON:0008906 ! lateral line nerve
relationship: part_of UBERON:2000425 ! anterior lateral line nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001481
name: ventral anterior lateral line nerve
namespace: uberon
def: "Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts." [ZFIN:curator]
xref: ZFA:0001481
is_a: UBERON:0008906 ! lateral line nerve
relationship: part_of UBERON:2000425 ! anterior lateral line nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001482
name: middle lateral line nerve
namespace: uberon
def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [ZFIN:curator]
xref: ZFA:0001482
is_a: UBERON:0008906 ! lateral line nerve
relationship: part_of UBERON:2000175 ! posterior lateral line nerve
relationship: part_of UBERON:2005114 ! middle lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001483
name: middle lateral line ganglion
namespace: uberon
def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [ZFIN:curator]
xref: ZFA:0001483
is_a: UBERON:2000120 ! lateral line ganglion
relationship: part_of UBERON:2005114 ! middle lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001612
name: sensory canal
namespace: uberon
def: "Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromast organs." [TAO:wd]
comment: Sensory canals usually communicate with the environment via pores in the sensory canal or at the distal ends of tubules, which extend from canal where pores would otherwise be.
synonym: "lateral line canal" EXACT [TAO:0001612]
synonym: "lateral-line canal" EXACT [TAO:0001612]
xref: ZFA:0005443
relationship: part_of UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001617
name: trunk sensory canal
namespace: uberon
def: "Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to or onto the caudal fin. The trunk sensory canal is bilaterally paired." [TAO:wd]
comment: Pores frequently piercing scales if present; occasionally enclosed in bony ossicles.
synonym: "trunk lateral line canal" EXACT [TAO:0001617]
xref: ZFA:0005444
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001872 ! trunk sensory canal system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001619
name: post-otic sensory canal
namespace: uberon
def: "Sensory canal between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired." [TAO:wd]
comment: May be continuous with to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals.
synonym: "post-temporal canal" EXACT [TAO:0001619]
xref: ZFA:0005394
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001873 ! head sensory canal system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001629
name: otic sensory canal
namespace: uberon
def: "Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired." [TAO:wd]
comment: May be continuous with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals.
xref: ZFA:0005393
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001873 ! head sensory canal system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001630
name: supratemporal sensory canal
namespace: uberon
alt_id: UBERON:2001618
def: "Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired." [TAO:wd]
synonym: "occipital canal" EXACT [TAO:0001630]
synonym: "occipital sensory canal" EXACT [TAO:0001630]
synonym: "supratemporal canal" EXACT [TAO:0001630]
xref: ZFA:0005445
is_a: UBERON:2001612 ! sensory canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001810
name: supraorbital sensory canal
namespace: uberon
def: "Sensory canal anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired." [TAO:wd]
comment: May be continuous with otic and infraorbital sensory canals.
synonym: "supraorbital canal" EXACT [TAO:0001810]
xref: ZFA:0005396
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001873 ! head sensory canal system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001811
name: infraorbital sensory canal
namespace: uberon
def: "Sensory canal lateral or ventral to and in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired and associated with the infraorbital bones." [TAO:wd]
comment: May be continuous with otic and supraorbital sensory canals at their union.
synonym: "infraorbital canal" EXACT [TAO:0001811]
xref: ZFA:0005392
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001873 ! head sensory canal system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001812
name: preoperculo-mandibular sensory canal
namespace: uberon
def: "Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones." [TAO:wd]
comment: May be continuous with the otic and post-otic sensory canals at their union.
synonym: "preoperculo-mandibular canal" EXACT [TAO:0001812]
xref: ZFA:0005395
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001873 ! head sensory canal system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001813
name: preopercular sensory canal
namespace: uberon
def: "Sensory canal lateral or ventral to and in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired and associated with the preopercle bone." [TAO:wd]
comment: May be continuous with the otic and post-otic sensory canals at their union.
xref: ZFA:0005448
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001814
name: mandibular sensory canal
namespace: uberon
def: "Sensory canal anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and associated with the angular and dentary bones." [TAO:wd]
comment: May be continuous with the preoperculo-mandibular sensory canal.
synonym: "mandibular canal" RELATED [TAO:0001814]
xref: ZFA:0005451
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001812 ! preoperculo-mandibular sensory canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001824
name: lateral line scale
namespace: uberon
def: "Scale that is associated with the lateral line sensory canal." [TAO:wd]
xref: ZFA:0005530
relationship: part_of UBERON:2002099 ! lateral line scale series
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001872
name: trunk sensory canal system
namespace: uberon
def: "Lateral line system on trunk." [TAO:wd]
is_a: UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001873
name: head sensory canal system
namespace: uberon
def: "Lateral line system on head and pectoral girdle." [TAO:wd]
synonym: "cephalic sensory canal system" EXACT [TAO:0001873]
xref: ZFA:0005391
is_a: UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2001933
name: sensory canal tubule
namespace: uberon
def: "Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so." [TAO:wd]
xref: ZFA:0005447
is_a: UBERON:2001612 ! sensory canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2002099
name: lateral line scale series
namespace: uberon
def: "Anatomical cluster that consists of more than one lateral line scale." [TAO:wd]
is_a: BFO:0000040 ! material entity
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2002193
name: dorsolateral septum
namespace: uberon
def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [ZFIN:ZDB-PUB-961014-383]
synonym: "dorsal bar" RELATED [TAO:0002193]
xref: ZFA:0001672
relationship: part_of UBERON:0001841 ! anterior semicircular canal
relationship: part_of UBERON:0001842 ! posterior semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2002206
name: macula communis
namespace: uberon
xref: ZFA:0001671
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2002223
name: pillar of the semicircular canal
namespace: uberon
xref: ZFA:0001717
relationship: part_of UBERON:0001840 ! semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2002248
name: supratemporal commissure
namespace: uberon
def: "Lateral line canal that that crosses the supratemporal region posterior to the openings of the endolymphatic ducts and connects the lateral canals of each side." [DOI: 10.1002/cne.900280102]
comment: Not clear what the taxon constraints are here. The cited reference discusses two species of dogfish.
is_a: UBERON:1500003 ! lateral line canal lumen
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2002275
name: Jakubowski's organ
namespace: uberon
def: "Neuromast of the supraorbital sensory canal in the nasal bone. It is innervated by the buccal nerve rather than by the supraorbital nerve, which invariably innervates neuromasts of the supraorbital canal. (Johnson and Patterson 1993)." [TAO:wd]
is_a: UBERON:0008904 ! neuromast
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005054
name: inner optic circle
namespace: uberon
synonym: "IOC" EXACT [TAO:0005054]
xref: ZFA:0005054
is_a: UBERON:0002203 ! vasculature of eye
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005113
name: dorsal lateral line neuromast
namespace: uberon
def: "Neuromast that is part of the dorsal lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
synonym: "neuromast dorsal" EXACT [TAO:0005113]
xref: TAO:0005113
xref: ZFA:0005113
is_a: UBERON:0008904 ! neuromast
relationship: part_of UBERON:0003095 ! dorsal lateral line

[Term]
id: UBERON:2005114
name: middle lateral line system
namespace: uberon
xref: ZFA:0005114
is_a: UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005115
name: primary posterior lateral line primordium
namespace: uberon
def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [ZFIN:curator]
synonym: "primary posterior lateral line primordia" EXACT PLURAL [TAO:0005115]
synonym: "primI" EXACT [TAO:0005115]
xref: ZFA:0005115
is_a: UBERON:2001157 ! posterior lateral line primordium
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005116
name: secondary posterior lateral line primordium
namespace: uberon
def: "Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction." [ZFIN:curator]
synonym: "secondary posterior lateral line primordia" EXACT PLURAL [TAO:0005116]
xref: ZFA:0005116
is_a: UBERON:2001157 ! posterior lateral line primordium
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005117
name: anterior lateral line primordium
namespace: uberon
def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [ZFIN:curator]
synonym: "anterior lateral line primordia" EXACT PLURAL [TAO:0005117]
xref: ZFA:0005117
is_a: UBERON:2000228 ! lateral line primordium
relationship: part_of UBERON:2001468 ! anterior lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005118
name: middle lateral line primordium
namespace: uberon
def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [ZFIN:curator]
synonym: "middle lateral line primordia" EXACT PLURAL [TAO:0005118]
xref: ZFA:0005118
is_a: UBERON:2000228 ! lateral line primordium
relationship: part_of UBERON:2005114 ! middle lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005121
name: middle lateral line placode
namespace: uberon
xref: ZFA:0005121
relationship: part_of UBERON:2005114 ! middle lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005144
name: ampullary nerve
namespace: uberon
def: "A branch of the 8th cranial nerve that innervates the cristae ampullaris." [ZFIN:curator]
xref: ZFA:0005144
relationship: part_of UBERON:0001648 ! vestibulocochlear nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005227
name: protoneuromast
namespace: uberon
synonym: "immature neuromast" RELATED [TAO:0005227]
synonym: "proto neuromast" RELATED [TAO:0005227]
synonym: "proto-neuromast" RELATED [TAO:0005227]
xref: ZFA:0005227
relationship: part_of UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005409
name: pars superior ear
namespace: uberon
def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator]
xref: ZFA:0005409
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005410
name: pars inferior ear
namespace: uberon
def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator]
xref: ZFA:0005410
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005411
name: common crus
namespace: uberon
xref: ZFA:0005411
relationship: part_of UBERON:2005409 ! pars superior ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005412
name: transverse canal
namespace: uberon
def: "Duct that crosses the midline connecting the sacculi." [ZFIN:curator]
xref: ZFA:0005412
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005415
name: inner ear foramen
namespace: uberon
def: "Foramen in the inner ear." [ZFIN:curator]
xref: ZFA:0005415
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2005416
name: sacculoagenar foramen
namespace: uberon
xref: ZFA:0005416
is_a: UBERON:2005415 ! inner ear foramen
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2007054
name: pillar of the anterior semicircular canal
namespace: uberon
synonym: "anterior hub of the semicircular canal" EXACT [TAO:0007054]
synonym: "anterior pillar" EXACT [TAO:0007054]
synonym: "anterior pillar of the semicircular canal" EXACT [TAO:0007054]
synonym: "horizontal hub" RELATED [TAO:0007054]
xref: ZFA:0007054
is_a: UBERON:2002223 ! pillar of the semicircular canal
relationship: part_of UBERON:0001841 ! anterior semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:2007055
name: pillar of the lateral semicircular canal
namespace: uberon
synonym: "lateral hub of the semicircular canal" EXACT [TAO:0007055]
synonym: "ventral bar" EXACT [TAO:0007055]
synonym: "ventral pillar" EXACT [TAO:0007055]
synonym: "ventral piller of the semicircular canal" EXACT [TAO:0007055]
xref: ZFA:0007055
is_a: UBERON:2002223 ! pillar of the semicircular canal
relationship: part_of UBERON:0001843 ! lateral semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: teleost_anatomy_curators

[Term]
id: UBERON:3000002
name: alary cartilage
namespace: uberon
def: "Paired, cup-shaped cartilage that are dorsal to the septomaxillae and anterior to the oblique cartilage. The anterior, convex face of each alary cartilage is synchondrotically fused to the superior prenasal cartilage and the ventral edge is fused to the superior margin of the crista intermedia." [AAO:LAP]
synonym: "alinasal cartilage" RELATED [UBERON:3000002]
synonym: "cartilago alaris" RELATED [UBERON:3000002]
synonym: "cartilago alaris nasi" RELATED [UBERON:3000002]
synonym: "cartilago cupullaris" RELATED [UBERON:3000002]
synonym: "copula anterior" RELATED [UBERON:3000002]
synonym: "naseflngelknorpel" RELATED [UBERON:3000002]
synonym: "processus alaris" RELATED [UBERON:3000002]
synonym: "second upper labial" RELATED [UBERON:3000002]
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000015
name: anterior maxillary process
namespace: uberon
def: "Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla." [AAO:LAP]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000016
name: anterior nasal wall
namespace: uberon
def: "Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule." [AAO:LAP]
synonym: "prenasal wall" RELATED [UBERON:3000016]
synonym: "solum anterius" RELATED [UBERON:3000016]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000057
name: canalis semicircularis anterior
namespace: uberon
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001842 ! posterior semicircular canal
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000059
name: capsular process
namespace: uberon
def: "Narrow process of the skeletal support that projects forward." [AAO:LAP]
relationship: part_of UBERON:3000565 ! skeletal support for eminentia olfactoria
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000068
name: cartilago ectochoanalis
namespace: uberon
def: "Lateral cartilaginous border of the fenestra endochoanalis." [AAO:LAP]
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000069
name: cartilago infranarina
namespace: uberon
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000079
name: cartilago retronarina
namespace: uberon
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000085
name: cavum inferius
namespace: uberon
def: "Accessory cavity located ventral to the cavum principale and cavum medius." [AAO:LAP]
is_a: UBERON:0001707 ! nasal cavity
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000086
name: cavum internasale
namespace: uberon
is_a: UBERON:0001707 ! nasal cavity
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000087
name: cavum medius
namespace: uberon
def: "Small accessory cavity located between the cavum principale and cavum inferius." [AAO:LAP]
is_a: UBERON:0001707 ! nasal cavity
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000088
name: cavum praenasale
namespace: uberon
is_a: UBERON:0001707 ! nasal cavity
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000089
name: cavum principale
namespace: uberon
def: "The largest part of the nasal cavity, containing the olfactory epithelium." [AAO:LAP] {comment="AAO:EJS"}
is_a: UBERON:0001707 ! nasal cavity
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000110
name: crista contacta
namespace: uberon
def: "Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior." [AAO:LAP]
relationship: part_of UBERON:3000645 ! corpus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000113
name: crista intermedia
namespace: uberon
def: "Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior." [AAO:LAP]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000117
name: crista subnasalis
namespace: uberon
def: "Ventral crest of the paries nasi." [AAO:LAP]
synonym: "subnasal crest" RELATED [UBERON:3000117]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000118
name: crista supraorbitalis
namespace: uberon
def: "Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen." [AAO:LAP]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000141
name: endolymphatic system
namespace: uberon
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000155
name: extremitas anterior
namespace: uberon
def: "Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior." [AAO:LAP]
synonym: "anterior ramus" RELATED [UBERON:3000155]
relationship: part_of UBERON:0011167 ! septomaxilla bone
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000160
name: fenestra dorsalis nasi
namespace: uberon
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000161
name: fenestra endochoanalis
namespace: uberon
def: "Opening on the ventral aspect of the nasal capsule. It contains the apertura nasalis interna." [AAO:LAP]
synonym: "fenestra exochoanalis" RELATED [UBERON:3000161]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000162
name: fenestra endonarina communis
namespace: uberon
def: "Opening on the anterolateral aspect of the nasal capsule. It contains the apertura nasalis externa." [AAO:LAP]
synonym: "apertura nasalis externa" RELATED [UBERON:3000162]
synonym: "fenestra narina" RELATED [UBERON:3000162]
synonym: "narial fenestra" RELATED [UBERON:3000162]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000164
name: fenestra lateralis nasi
namespace: uberon
def: "Opening on the lateral side of the nasal capsule." [AAO:LAP]
synonym: "fenestra infraconchalis" RELATED [UBERON:3000164]
synonym: "fenestra retronarina" RELATED [UBERON:3000164]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000166
name: fenestra nasobasalis
namespace: uberon
def: "Small opening at the anterior tip of the nasal capsule, on the floor of the cavum inferius. It is located medially to the base of the inferior prenasal cartilage and serves for the passage of the ramus medialis narium and arteria orbitonasalis." [AAO:LAP]
synonym: "basal fenestra" RELATED [UBERON:3000166]
synonym: "fenestra basalis nasi" RELATED [UBERON:3000166]
synonym: "foramen apicale" RELATED [UBERON:3000166]
synonym: "foramen epiphaniale" RELATED [UBERON:3000166]
synonym: "nasobasal fenestra" RELATED [UBERON:3000166]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000167
name: fenestra nasolateralis
namespace: uberon
def: "Elongated opening located on the lateral side of the nasal capsule." [AAO:LAP]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000170
name: fenestra precerebralis
namespace: uberon
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000171
name: fenestra prechoanalis
namespace: uberon
def: "Large opening of the nasal floor anterior to the fenestra endochoanalis." [AAO:LAP]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000178
name: footplate of pars media plectri
namespace: uberon
def: "Independent, horizontal bar of cartilage located on the anterior part of the fenestra ovalis in front of the pars interna plectri." [AAO:LAP]
synonym: "fenestral plate" RELATED [UBERON:3000178]
synonym: "interstapediale" RELATED [UBERON:3000178]
synonym: "otostapes" RELATED [UBERON:3000178]
synonym: "pars otica columellae" RELATED [UBERON:3000178]
synonym: "pseudooperculum" RELATED [UBERON:3000178]
relationship: part_of UBERON:3000408 ! pars media plectri
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000189
name: foramen orbitonasale laterale
namespace: uberon
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000190
name: foramen orbitonasale mediale
namespace: uberon
synonym: "canalis orbitonasalis" RELATED [UBERON:3000190]
synonym: "canalis orbitonasalis medialis" RELATED [UBERON:3000190]
synonym: "foramen orbitonasale" RELATED [UBERON:3000190]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000234
name: inferior prenasal cartilage
namespace: uberon
def: "Elongate cartilage that extends anteroventrally from the solum nasi to abut the ventral portion of the posterior aspect of the alary process of the premaxilla. It was first described by Wiedersheim in 1876." [AAO:LAP]
synonym: "inferior prenasal process" RELATED [UBERON:3000234]
synonym: "processus prenasalis inferior" RELATED [UBERON:3000234]
synonym: "processus prenasalis inferior lateralis" RELATED [UBERON:3000234]
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000259
name: lamina inferior
namespace: uberon
def: "Lateral expansion of the crista intermedia that serves as the floor of the cavum medium." [AAO:LAP]
synonym: "lamina inferior cristae intermediae" RELATED [UBERON:3000259]
relationship: part_of UBERON:0006332 ! nasal capsule
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000260
name: lamina nariochoanalis
namespace: uberon
def: "Free, dorsal margin of the lamina inferior." [AAO:LAP]
relationship: part_of UBERON:0006332 ! nasal capsule
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000263
name: lamina precerebralis
namespace: uberon
def: "Posterior face of septum nasi." [AAO:LAP]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000264
name: lamina superior
namespace: uberon
def: "Lateral expansion of the crista intermedia that serves as the roof of the cavum medium." [AAO:LAP]
synonym: "lamina superior cristae intermediae" RELATED [UBERON:3000264]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000290
name: medial inferior prenasal cartilage
namespace: uberon
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000291
name: medial orbitonasal foramen
namespace: uberon
def: "Opening on the postnasal wall for the medial branch (= ramus medialis nasi) of the ophthalmicus nerve." [AAO:LAP]
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000294
name: median prenasal process
namespace: uberon
def: "Anterior projection of the septum nasi that protrudes through the anterior nasal wall." [AAO:LAP]
synonym: "processus prenasalis medius" RELATED [UBERON:3000294]
relationship: part_of UBERON:0001706 ! nasal septum
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000316
name: nasal opening
namespace: uberon
is_a: UBERON:0006332 ! nasal capsule
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000329
name: oblique cartilage
namespace: uberon
def: "Semi-circular cartilaginous sheet that lies lateral to the side of the septum nasi." [AAO:LAP]
synonym: "cartilago obliqua" RELATED [UBERON:3000329]
synonym: "cartilago obliqua nasi" RELATED [UBERON:3000329]
synonym: "cartilago obliquo" RELATED [UBERON:3000329]
synonym: "dorsal process" RELATED [UBERON:3000329]
synonym: "lamina obliqua" RELATED [UBERON:3000329]
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000333
name: olfactory foramen
namespace: uberon
is_a: UBERON:3000316 ! nasal opening
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000381
name: paranasal commissure
namespace: uberon
def: "Cartilaginous bridge that extends posteriorly to the anterolateral corner of the posterior nasal wall." [AAO:LAP]
synonym: "commissura lateralis nasi" RELATED [UBERON:3000381]
synonym: "connection between lamina nariochoanalis and postnasal wall" RELATED [UBERON:3000381]
synonym: "processus lingularis" RELATED [UBERON:3000381]
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000389
name: paries nasi
namespace: uberon
def: "Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation." [AAO:LAP]
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000393
name: pars amphibiorum
namespace: uberon
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000395
name: pars basilaris
namespace: uberon
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000399
name: pars externa plectri
namespace: uberon
synonym: "extracolumellare" RELATED [UBERON:3000399]
synonym: "extrapediale" RELATED [UBERON:3000399]
synonym: "extraplectral" RELATED [UBERON:3000399]
synonym: "extrastapes" RELATED [UBERON:3000399]
synonym: "hyostapes" RELATED [UBERON:3000399]
synonym: "medio-stapedial" RELATED [UBERON:3000399]
synonym: "pars quadrata columellae" RELATED [UBERON:3000399]
relationship: part_of UBERON:3000443 ! plectral apparatus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000405
name: pars inferior of labyrinth
namespace: uberon
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000406
name: pars interna plectri
namespace: uberon
def: "Plate-like structure that lies in the fenestra ovalis. It arises within the membrana opercularis in the posterior part of the fenestra." [AOO:LAP]
synonym: "operculum auris" RELATED [UBERON:3000406]
synonym: "operculum fenestrae ovalis" RELATED [UBERON:3000406]
relationship: part_of UBERON:3000443 ! plectral apparatus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000408
name: pars media plectri
namespace: uberon
relationship: part_of UBERON:3000443 ! plectral apparatus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000428
name: perilymphatic system
namespace: uberon
def: "Consists of enlarged cistern against which the operculum and footplate of the columella rest in the oval window. Together with the endolymphatic systems comprises the membranous labryinth of the inner ear. Duellman and Trueb 1994." [PHENOSCAPE]
is_a: UBERON:0001032 ! sensory system
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000434
name: planum antorbitale
namespace: uberon
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000437
name: planum conchale
namespace: uberon
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000438
name: planum internasale
namespace: uberon
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000440
name: planum terminale
namespace: uberon
def: "Vertical plate of cartilage that is fused posterodorsally to the oblique cartilage and anteriorly to the lamina inferior." [AAO:LAP]
synonym: "pars terminalis" RELATED [UBERON:3000440]
synonym: "terminal plate" RELATED [UBERON:3000440]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000441
name: planum triangulare
namespace: uberon
def: "Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially." [AAO:LAP]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000443
name: plectral apparatus
namespace: uberon
def: "Complex sound-conducting anatomical structure." [AAO:LAP]
is_a: UBERON:0001686 ! auditory ossicle bone
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000448
name: posterior maxillary process
namespace: uberon
def: "Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially." [AAO:LAP]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000449
name: posterior maxillary process dorsal process
namespace: uberon
relationship: part_of UBERON:3000448 ! posterior maxillary process
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000454
name: postnasal wall
namespace: uberon
def: "Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi." [AAO:LAP]
synonym: "posterior wall of nasal capsule" BROAD []
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000486
name: processus ascendens plectri
namespace: uberon
def: "Cartilaginous or ligamentous connection between the pars externa plectri and the crista parotica." [AAO:LAP]
synonym: "laterohyale" RELATED [UBERON:3000486]
synonym: "processus ascendens columellae" RELATED [UBERON:3000486]
synonym: "processus dorsalis columellae" RELATED [UBERON:3000486]
synonym: "processus superior columellae" RELATED [UBERON:3000486]
synonym: "suprastapediale" RELATED [UBERON:3000486]
relationship: part_of UBERON:3000399 ! pars externa plectri
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000492
name: processus infrafenestralis
namespace: uberon
def: "Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage." [AAO:LAP]
synonym: "dorsal crest" RELATED [UBERON:3000492]
relationship: part_of UBERON:3000645 ! corpus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000509
name: processus suprafenestralis
namespace: uberon
relationship: part_of UBERON:3000645 ! corpus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000538
name: recessus fenestrae ovalis
namespace: uberon
relationship: part_of UBERON:3000428 ! perilymphatic system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000547
name: rostral process
namespace: uberon
def: "Is a process of the nasal bone directed anteriorly towards the rostrum." [PHENOSCAPE]
relationship: part_of UBERON:0001681 ! nasal bone
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000560
name: septum semicircularium anterior
namespace: uberon
def: "The anterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE]
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000561
name: septum semicircularium laterale
namespace: uberon
def: "The lateral connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE]
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000562
name: septum semircularium posterior
namespace: uberon
def: "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE]
relationship: part_of UBERON:0001846 ! internal ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000563
name: seydels palatal process
namespace: uberon
relationship: part_of UBERON:3000068 ! cartilago ectochoanalis
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000565
name: skeletal support for eminentia olfactoria
namespace: uberon
def: "Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria." [AAO:LAP]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000569
name: solum nasi
namespace: uberon
def: "Unpaired, horizontal plate that forms the floor of the nasal capsule." [AAO:LAP]
synonym: "nasal floor" RELATED [UBERON:3000569]
synonym: "planum basale" RELATED [UBERON:3000569]
synonym: "solum nasale" RELATED [UBERON:3000569]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000570
name: spatium sacculare
namespace: uberon
relationship: part_of UBERON:3000428 ! perilymphatic system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000580
name: stylus of pars media plectri
namespace: uberon
synonym: "columella" RELATED [UBERON:3000580]
synonym: "columella auris" RELATED [UBERON:3000580]
synonym: "columellare" RELATED [UBERON:3000580]
synonym: "interstapediale" RELATED [UBERON:3000580]
synonym: "mediostapediale" RELATED [UBERON:3000580]
synonym: "mesostapediale" RELATED [UBERON:3000580]
synonym: "os columellare" RELATED [UBERON:3000580]
synonym: "os intermedium" RELATED [UBERON:3000580]
synonym: "stapes" RELATED [UBERON:3000580]
synonym: "stelidium" RELATED [UBERON:3000580]
synonym: "stilus columellare" RELATED [UBERON:3000580]
relationship: part_of UBERON:3000408 ! pars media plectri
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000586
name: superior prenasal cartilage
namespace: uberon
def: "Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa." [AAO:LAP]
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000601
name: tectum nasi
namespace: uberon
def: "Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi." [AAO:LAP]
synonym: "tectum nasale" RELATED [UBERON:3000601]
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000644
name: processus lingularis of nasal skeleton
namespace: uberon
def: "Rod-shaped process that extends caudally from the inferior edge of the planum terminale." [AAO:LAP]
synonym: "lingular process" RELATED [UBERON:3000644]
synonym: "processus lingularis" BROAD []
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000645
name: corpus
namespace: uberon
alt_id: UBERON:3010459
def: "Basal part of the septomaxilla." [AAO:LAP]
synonym: "centrum" RELATED [UBERON:3000645]
synonym: "pars horizontalis" RELATED [UBERON:3000645]
relationship: part_of UBERON:0011167 ! septomaxilla bone
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000646
name: margo libera
namespace: uberon
def: "Anterior, rounded portion of the corpus of the septomaxilla." [AAO:LAP]
relationship: part_of UBERON:3000645 ! corpus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000647
name: crista interna
namespace: uberon
def: "Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium." [AAO:LAP]
relationship: part_of UBERON:3000492 ! processus infrafenestralis
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3000648
name: crista praeopercularis
namespace: uberon
def: "Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis." [AAO:LAP]
relationship: part_of UBERON:3000408 ! pars media plectri
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010007
name: pit organ
namespace: uberon
alt_id: UBERON:3010823
def: "Mechanoreceptive organ of the lateral line, smaller than neuromasts, they are located on the surface of the epidermis. These receptors receive afferent and efferent innervation." [AAO:EJS]
relationship: part_of UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010079
name: upper eyelid protuberances
namespace: uberon
relationship: part_of UBERON:0001712 ! upper eyelid
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010105
name: anterodorsal lateral line nerve (ADLLN)
namespace: uberon
def: "Sensory nerve of the anterior lateral line component. It develops from the preotic anterodorsal placode. ADLLN branches into two rami innervating orbital lines of neuromasts." [AAO:SIQ]
is_a: UBERON:0008906 ! lateral line nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010109
name: anteroventral lateral line nerve (AVLLN)
namespace: uberon
def: "Sensory nerve of the anterior lateral line component. It develops from preotic anteroventral placode. AVLLN innervates lower jaw lines of neuromasts." [AAO:EJS]
is_a: UBERON:0008906 ! lateral line nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010115
name: posterior lateral line nerve (PLLN)
namespace: uberon
def: "Sensory nerve of the posterior lateral line component. It develops from de postotic posterior placode. PLLN innervates the trunk lines of neuromasts." [AAO:EJS]
is_a: UBERON:0008906 ! lateral line nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010125
name: musculus levator bulbi
namespace: uberon
def: "Cranial nerve V innervated; ventral to the eye." [AAO:EJS]
is_a: UBERON:0001601 ! extra-ocular muscle
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010126
name: middle lateral line nerve (MLLN)
namespace: uberon
def: "Sensory nerve of the posterior lateral line component. It develops from the postotic middle placode. MLLN innervates neuromasts located over the otic capsule and the suprabranchial line of neuromasts." [AAO:EJS]
is_a: UBERON:0008906 ! lateral line nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010146
name: lacrimal
namespace: uberon
def: "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS]
synonym: "ectethmoid" RELATED [UBERON:3010146]
is_a: UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010197
name: lateral recess
namespace: uberon
def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS]
is_a: CARO:0000000 ! anatomical entity
relationship: part_of UBERON:0001707 ! nasal cavity
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010706
name: lateral line nucleus
namespace: uberon
relationship: part_of UBERON:0002540 ! lateral line system
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010728
name: otic opercular element
namespace: uberon
def: "Round, flat bone or cartilage that lies in the fenestra ovalis and articulates with the columella." [AAO:DBW]
synonym: "otic operculum" EXACT []
relationship: part_of UBERON:0001032 ! sensory system
relationship: part_of UBERON:0001690 ! ear
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010735
name: ramus anterior of CN VIII
namespace: uberon
def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS]
relationship: part_of UBERON:0001648 ! vestibulocochlear nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010736
name: ramus posterior of CN VIII
namespace: uberon
def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS]
relationship: part_of UBERON:0001648 ! vestibulocochlear nerve
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010757
name: ramus superficial ophthalmic
namespace: uberon
def: "Dorsal branch of ADLLN that innervates supraorbital line of neuromasts." [AAO:EJS]
is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010759
name: ramus buccal
namespace: uberon
def: "Ventral ramus of the ADLLN that innervates the infraorbital line of neuromasts." [AAO:EJS]
is_a: UBERON:3010105 ! anterodorsal lateral line nerve (ADLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010765
name: ramus mandibularis externus
namespace: uberon
def: "Runs together with motor fibers of the hyomandibular trunk of VII. The mandibularis externus of AVLLN branches into three ramules ." [AAO:SIQ]
is_a: UBERON:3010109 ! anteroventral lateral line nerve (AVLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010778
name: jugal ramule
namespace: uberon
def: "This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus." [AAO:SIQ]
is_a: UBERON:3010765 ! ramus mandibularis externus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010794
name: oral ramule
namespace: uberon
def: "Medial branch of the ramus mandibularis externus. This ramule innervates the oral and angular lines of neuromasts." [AAO:EJS]
is_a: UBERON:3010765 ! ramus mandibularis externus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010795
name: preopercular ramule
namespace: uberon
def: "Ventral branch of the ramus mandibularis externus. This ramule have a superior and an inferior division, both innervating the preopercular line of neuromasts." [AAO:EJS]
is_a: UBERON:3010765 ! ramus mandibularis externus
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010796
name: ramus supraotic
namespace: uberon
def: "Small ramus of the MLLN that innervates neuromasts located at the posterior margin of the otic capsule." [AAO:SIQ]
is_a: UBERON:3010126 ! middle lateral line nerve (MLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010798
name: ramulus suprabranchialis anterior
namespace: uberon
def: "Ramulus that innervates the suprabranchial line of neuromasts." [AAO:SIQ]
is_a: UBERON:3010126 ! middle lateral line nerve (MLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010799
name: ramulus suprabranchialis posterior
namespace: uberon
def: "Ramulus innervating the suprabranchial line of neuromasts." [AAO:SIQ]
is_a: UBERON:3010126 ! middle lateral line nerve (MLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010801
name: ramus lateral
namespace: uberon
def: "Ventral division of the trunk of the PLLN, this prominent ramus extends over the lateral trunk and caudal musculature innervating the lateral line of neuromasts." [AAO:SIQ]
is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010804
name: ramus ventral
namespace: uberon
def: "This ramus leaves the postotic ganglionic complex together with the third branchial ramus of X. This ramule innervates the ventral line of neuromasts." [AAO:SIQ]
is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN)
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:3010827
name: anterior prenasal cartilage
namespace: uberon
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0006813 ! nasal skeleton
property_value: UBPROP:0000004 "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string
created_by: amphibian_anatomy_curators

[Term]
id: UBERON:4200199
name: sallet sensory system
namespace: uberon
def: "Ciliary restraint system in the inner ear that uses sallets instead of the tectorial membrane." [PHENOSCAPE]
synonym: "sallet restraint system" EXACT []
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
created_by: AD

[Term]
id: UBERON:4300005
name: aphakic space
namespace: uberon
def: "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision. " [PHENOSCAPE]
xref: http://www.briancoad.com/Dictionary/Introduction%20and%20A-F.htm
relationship: part_of UBERON:0000970 ! eye
created_by: WD

[Term]
id: UBERON:4300126
name: tectorial restraint system
namespace: uberon
def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear.  In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates) [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]." [PHENOSCAPE]
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0001846 ! internal ear
created_by: WD

[Term]
id: UBERON:4300176
name: parietal branch of the supraorbital canal
namespace: uberon
def: "Branch of supraorbital sensory canal that extends to the parietal." [PHENOSCAPE]
is_a: UBERON:2001612 ! sensory canal
relationship: part_of UBERON:2001873 ! head sensory canal system
created_by: http://orcid.org/0000-0003-3162-7490

[Term]
id: UBERON:4300181
name: posterior sclerotic cartilage
namespace: uberon
def: "Sclerotic cartilage that is located posterior to the eye." [PHENOSCAPE]
is_a: UBERON:0010289 ! scleral cartilage
created_by: http://orcid.org/0000-0003-3162-7490

[Term]
id: UBERON:4300182
name: anterior sclerotic cartilage
namespace: uberon
def: "Sclerotic cartilage that is located anterior to the eye." [PHENOSCAPE]
is_a: UBERON:0010289 ! scleral cartilage
created_by: http://orcid.org/0000-0003-3162-7490

[Term]
id: UBERON:4300238
name: pored lateral line scale
namespace: uberon
is_a: UBERON:2001824 ! lateral line scale
created_by: WD

[Term]
id: UBERON:4300241
name: ethmoid commissure
namespace: uberon
def: "Sensory canal that traverses the rostral bone." [PHENOSCAPE]
synonym: "ethmoid lateral line commissure" EXACT []
is_a: UBERON:2001612 ! sensory canal
created_by: WD

[Term]
id: UBERON:4300242
name: lateral line scale 6
namespace: uberon
def: "The sixth scale in the lateral line series." [PHENOSCAPE]
is_a: UBERON:2001824 ! lateral line scale
created_by: WD

[Term]
id: UBERON:6002639
name: insect larval sense organ
namespace: uberon
def: "Any sense organ that is part of some larva." [FBC:auto_generated_definition]
synonym: "larval sense organ" EXACT []
xref: FBbt:00002639
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:6002642
name: insect embryonic/larval ocular segment sensillum
namespace: uberon
def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition]
synonym: "larval ocular segment sensillum" EXACT []
xref: FBbt:00002642
is_a: CARO:0000000 ! anatomical entity
is_a: UBERON:6007280 ! insect embryonic/larval head sense organ

[Term]
id: UBERON:6005168
name: insect external sensory organ
namespace: uberon
synonym: "sensillum" NARROW []
xref: FBbt:00005168
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:6005177
name: insect chaeta
namespace: uberon
def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, FlyBase:FBrf0166419]
synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704]
xref: FBbt:00005177
is_a: UBERON:6007232 ! insect eo-type sensillum

[Term]
id: UBERON:6005805
name: insect Bolwig organ
namespace: uberon
def: "Visual organ of the larva. It consists of a dense cluster of 12 ciliated photoreceptor neurons." [FlyBase:FBrf0089570]
synonym: "Bolwig's organ" EXACT []
synonym: "dorsocaudal pharyngeal sense organ" RELATED []
synonym: "embryonic Bolwig's organ" EXACT []
synonym: "embryonic visual system" EXACT []
synonym: "larval Bolwig's organ" EXACT []
xref: FBbt:00005805
is_a: UBERON:0000970 ! eye
is_a: UBERON:6002642 ! insect embryonic/larval ocular segment sensillum
is_a: UBERON:6007233 ! insect internal sensillum
is_a: UBERON:6007242 ! insect embryonic/larval head sensillum

[Term]
id: UBERON:6007231
name: insect external sensillum
namespace: uberon
def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS]
xref: FBbt:00007231
is_a: UBERON:0002536 ! arthropod sensillum
is_a: UBERON:6005168 ! insect external sensory organ

[Term]
id: UBERON:6007232
name: insect eo-type sensillum
namespace: uberon
def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570]
synonym: "eso" RELATED []
xref: FBbt:00007232
is_a: UBERON:6007231 ! insect external sensillum

[Term]
id: UBERON:6007233
name: insect internal sensillum
namespace: uberon
def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS]
xref: FBbt:00007233
is_a: UBERON:0002536 ! arthropod sensillum
is_a: UBERON:6007373 ! insect internal sense organ

[Term]
id: UBERON:6007240
name: insect embryonic/larval sensillum
namespace: uberon
def: "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition]
synonym: "larval sensillum" EXACT []
xref: FBbt:00007240
is_a: UBERON:0002536 ! arthropod sensillum
is_a: UBERON:6002639 ! insect larval sense organ

[Term]
id: UBERON:6007242
name: insect embryonic/larval head sensillum
namespace: uberon
def: "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition]
synonym: "larval head sensillum" NARROW []
xref: FBbt:00007242
is_a: UBERON:0000963 ! head sensillum
is_a: UBERON:6007240 ! insect embryonic/larval sensillum
is_a: UBERON:6007280 ! insect embryonic/larval head sense organ

[Term]
id: UBERON:6007280
name: insect embryonic/larval head sense organ
namespace: uberon
def: "Any sense organ (UBERON:6005155) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition]
synonym: "larval head sense organ" EXACT []
xref: FBbt:00007280
is_a: UBERON:6002639 ! insect larval sense organ

[Term]
id: UBERON:6007373
name: insect internal sense organ
namespace: uberon
def: "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS]
xref: FBbt:00007373
is_a: UBERON:0000020 ! sense organ

[Term]
id: UBERON:8000004
name: central retina
namespace: uberon
def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/]
relationship: part_of UBERON:0000966 ! retina
created_by: http://orcid.org/0000-0001-5208-3432

[Term]
id: UBERON:8000005
name: Henle's fiber layer
namespace: uberon
def: "This layer contains bundles of unmyelinated cone and rod photoreceptor axons terminating in the pedicles and spherules that synapse in the retinal outer plexiform layer (OPL)." [PMID:21071737]
synonym: "Henle fiber layer" EXACT []
synonym: "HFL" EXACT []
synonym: "nerve fiber layer of Henle" EXACT []
relationship: part_of UBERON:0000966 ! retina
created_by: http://orcid.org/0000-0001-5208-3432

[Term]
id: http://owltools.org/Q

[Typedef]
id: part_of
name: part of
name: part_of
namespace: external
namespace: protein
namespace: quality
namespace: uberon
def: "a core relation that holds between a part and its whole" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
xref: BFO:0000050
property_value: IAO:0000111 "is part of" xsd:string
property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string
property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string
property_value: IAO:0000118 "part_of" xsd:string
property_value: RO:0001900 RO:0001901
property_value: RO:0040042 BFO:0000002
property_value: RO:0040042 BFO:0000003
property_value: RO:0040042 BFO:0000004
property_value: RO:0040042 BFO:0000017
property_value: RO:0040042 BFO:0000019
property_value: RO:0040042 BFO:0000020
property_value: RO:0040042 BFO:0000031
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf
property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string
is_transitive: true