pattern_name: calcifiedAnatomicalEntity
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/calcifiedAnatomicalEntity.yaml
description: "A hardening of an anatomical entity, caused by deposition of or conversion into calcium carbonate or some other insoluble calcium compounds. Example: HP_0011415 'Calcified placenta."

contributors: 
  - https://orcid.org/0000-0002-3528-5267
  - https://orcid.org/0000-0001-5208-3432

classes:
  calcified: PATO:0001447
  abnormal: PATO:0000460
  anatomical entity: UBERON:0001062

relations: 
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym 

vars:
  anatomical_entity: "'anatomical entity'"

name:
  text: "%s calcification"
  vars:
   - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "calcified %s"
    vars:
     - anatomical_entity

def:
  text: "Calcification of the %s."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some ('calcified' and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))"
  vars:
    - anatomical_entity