{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Flux sampling" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Basic usage" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The easiest way to get started with flux sampling is using the `sample` function in the `flux_analysis` submodule. `sample` takes at least two arguments: a cobra model and the number of samples you want to generate." ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", " | ACALD | \n", "ACALDt | \n", "ACKr | \n", "ACONTa | \n", "ACONTb | \n", "ACt2r | \n", "ADK1 | \n", "AKGDH | \n", "AKGt2r | \n", "ALCD2x | \n", "... | \n", "RPI | \n", "SUCCt2_2 | \n", "SUCCt3 | \n", "SUCDi | \n", "SUCOAS | \n", "TALA | \n", "THD2 | \n", "TKT1 | \n", "TKT2 | \n", "TPI | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | \n", "-0.577302 | \n", "-0.149662 | \n", "-0.338001 | \n", "10.090870 | \n", "10.090870 | \n", "-0.338001 | \n", "0.997694 | \n", "4.717467 | \n", "-0.070599 | \n", "-0.427639 | \n", "... | \n", "-2.255649 | \n", "6.152278 | \n", "6.692068 | \n", "821.012351 | \n", "-4.717467 | \n", "2.230392 | \n", "133.608893 | \n", "2.230392 | \n", "2.220236 | \n", "5.263234 | \n", "
1 | \n", "-0.639279 | \n", "-0.505704 | \n", "-0.031929 | \n", "10.631865 | \n", "10.631865 | \n", "-0.031929 | \n", "4.207702 | \n", "6.763224 | \n", "-0.024720 | \n", "-0.133575 | \n", "... | \n", "-0.769792 | \n", "14.894313 | \n", "14.929989 | \n", "521.410118 | \n", "-6.763224 | \n", "0.755207 | \n", "66.656770 | \n", "0.755207 | \n", "0.749341 | \n", "7.135499 | \n", "
2 | \n", "-1.983410 | \n", "-0.434676 | \n", "-0.408318 | \n", "11.046294 | \n", "11.046294 | \n", "-0.408318 | \n", "5.510960 | \n", "7.240802 | \n", "-0.501086 | \n", "-1.548735 | \n", "... | \n", "-0.088852 | \n", "15.211972 | \n", "15.807554 | \n", "756.884622 | \n", "-7.240802 | \n", "0.065205 | \n", "42.830676 | \n", "0.065205 | \n", "0.055695 | \n", "8.109647 | \n", "
3 | \n", "-1.893551 | \n", "-0.618887 | \n", "-0.612598 | \n", "8.879426 | \n", "8.879426 | \n", "-0.612598 | \n", "6.194372 | \n", "5.382222 | \n", "-0.563573 | \n", "-1.274664 | \n", "... | \n", "-1.728387 | \n", "15.960829 | \n", "17.404437 | \n", "556.750972 | \n", "-5.382222 | \n", "1.714682 | \n", "37.386748 | \n", "1.714682 | \n", "1.709171 | \n", "7.003325 | \n", "
4 | \n", "-1.759520 | \n", "-0.321021 | \n", "-0.262520 | \n", "10.801480 | \n", "10.801480 | \n", "-0.262520 | \n", "4.815146 | \n", "9.236588 | \n", "-0.359817 | \n", "-1.438499 | \n", "... | \n", "-2.840577 | \n", "12.379023 | \n", "13.141259 | \n", "440.132011 | \n", "-9.236588 | \n", "2.822071 | \n", "0.292885 | \n", "2.822071 | \n", "2.814629 | \n", "6.205245 | \n", "
5 rows × 95 columns
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