{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Flux sampling" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Basic usage" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The easiest way to get started with flux sampling is using the `sample` function in the `flux_analysis` submodule. `sample` takes at least two arguments: a cobra model and the number of samples you want to generate." ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", " | ACALD | \n", "ACALDt | \n", "ACKr | \n", "ACONTa | \n", "ACONTb | \n", "ACt2r | \n", "ADK1 | \n", "AKGDH | \n", "AKGt2r | \n", "ALCD2x | \n", "... | \n", "RPI | \n", "SUCCt2_2 | \n", "SUCCt3 | \n", "SUCDi | \n", "SUCOAS | \n", "TALA | \n", "THD2 | \n", "TKT1 | \n", "TKT2 | \n", "TPI | \n", "
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0 | \n", "-2.060626 | \n", "-0.766231 | \n", "-1.746726 | \n", "6.136642 | \n", "6.136642 | \n", "-1.746726 | \n", "13.915541 | \n", "2.174506 | \n", "-0.242290 | \n", "-1.294395 | \n", "... | \n", "-6.117270 | \n", "33.457990 | \n", "34.319917 | \n", "704.483302 | \n", "-2.174506 | \n", "6.109618 | \n", "0.230408 | \n", "6.109618 | \n", "6.106540 | \n", "3.122076 | \n", "
1 | \n", "-1.518217 | \n", "-1.265778 | \n", "-0.253608 | \n", "9.081331 | \n", "9.081331 | \n", "-0.253608 | \n", "7.194475 | \n", "5.979050 | \n", "-0.225992 | \n", "-0.252439 | \n", "... | \n", "-5.072733 | \n", "39.902893 | \n", "40.343192 | \n", "718.488475 | \n", "-5.979050 | \n", "4.991843 | \n", "0.137019 | \n", "4.991843 | \n", "4.959315 | \n", "4.172389 | \n", "
2 | \n", "-3.790368 | \n", "-1.292543 | \n", "-0.457502 | \n", "9.340755 | \n", "9.340755 | \n", "-0.457502 | \n", "23.435794 | \n", "1.652395 | \n", "-0.333891 | \n", "-2.497825 | \n", "... | \n", "-0.674220 | \n", "0.153276 | \n", "1.506968 | \n", "844.889698 | \n", "-1.652395 | \n", "0.673601 | \n", "9.198001 | \n", "0.673601 | \n", "0.673352 | \n", "7.770955 | \n", "
3 | \n", "-5.173189 | \n", "-4.511308 | \n", "-2.333962 | \n", "7.364836 | \n", "7.364836 | \n", "-2.333962 | \n", "11.725401 | \n", "2.504044 | \n", "-0.051420 | \n", "-0.661881 | \n", "... | \n", "-0.681200 | \n", "7.506732 | \n", "9.110446 | \n", "885.755585 | \n", "-2.504044 | \n", "0.656561 | \n", "7.514520 | \n", "0.656561 | \n", "0.646653 | \n", "8.450394 | \n", "
4 | \n", "-6.787036 | \n", "-5.645414 | \n", "-1.521566 | \n", "6.373250 | \n", "6.373250 | \n", "-1.521566 | \n", "4.823373 | \n", "3.452123 | \n", "-0.126943 | \n", "-1.141621 | \n", "... | \n", "-0.510598 | \n", "9.307459 | \n", "10.941500 | \n", "749.854462 | \n", "-3.452123 | \n", "0.474878 | \n", "6.235982 | \n", "0.474878 | \n", "0.460514 | \n", "8.908012 | \n", "
5 rows × 95 columns
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