{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Supplementary notebook:\n", "\n", "Code to provide images shown in\n", "http://oscovida.github.io/2020-04-30-news-report-germanys-daily-cases-increasing.html\n" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "data": { "application/javascript": [ "\n", "console.log('Starting front end url_querystring_target comm target');\n", "const comm = Jupyter.notebook.kernel.comm_manager.new_comm('url_querystring_target', {'init': 1});\n", "comm.send({'ipyparams_browser_url': window.location.href});\n", "console.log('Sent window.location.href on url_querystring_target comm target');\n", "\n", "comm.on_msg(function(msg) {\n", " console.log(msg.content.data);\n", "});\n" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "%config InlineBackend.figure_formats = ['svg']\n", "import matplotlib.pyplot as plt\n", "import pandas as pd\n", "# use library from oscovida.github.io\n", "import coronavirus\n", "import ipyparams" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "data": { "text/markdown": [ "[Execute this notebook with Binder](https://mybinder.org/v2/gh/oscovida/binder/master?filepath=ipynb/)" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "coronavirus.display_binder_link(ipyparams.notebook_name)" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [], "source": [ "cases, deaths, country_label = coronavirus.get_country_data(\"Germany\")" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [ { "data": { "image/svg+xml": [ "\n", "\n", "\n", "\n" ], "text/plain": [ "

" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "fig, ax = plt.subplots(figsize=(10, 3)) # figure size in inches\n", "coronavirus.plot_daily_change(ax, cases, \"C1\")\n", "min_, max_ = ax.get_xlim() # presumably measured in days\n", "date_2020_04_30 = 737545 # retrieved with ax.get_xlim and \n", " # saved for convenience.\n", " # there must be a better way of converting to and \n", " # frome day-month-year.\n", "doi = date_2020_04_30 # Date Of Interest\n", "ax.set_xlim([doi-4, doi+2]) # units are days\n", "ax.set_ylim([0, 2000])\n", "fig.savefig(\"2020-04-30-bbc-germany-increasing1.svg\")\n" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [ { "data": { "image/svg+xml": [ "\n", "\n", "\n", "\n" ], "text/plain": [ "

" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "fig, ax = plt.subplots(figsize=(10, 3))\n", "coronavirus.plot_daily_change(ax, cases, \"C1\")\n", "ax.set_xlim([doi-80, doi+2])\n", "fig.savefig(\"2020-04-30-bbc-germany-increasing2.svg\")" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "data": { "text/html": [ "

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	total cases	daily new cases	total deaths	daily new deaths
2020-05-24	180328	342	8283	22
2020-05-23	179986	276	8261	33
2020-05-22	179710	689	8228	25
2020-05-21	179021	548	8203	59
2020-05-20	178473	695	8144	63
2020-05-19	177778	1227	8081	78
2020-05-18	176551	182	8003	41
2020-05-17	176369	617	7962	24
2020-05-16	175752	519	7938	41
2020-05-15	175233	755	7897	13

\n", "

" ], "text/plain": [ " total cases daily new cases total deaths daily new deaths\n", "2020-05-24 180328 342 8283 22\n", "2020-05-23 179986 276 8261 33\n", "2020-05-22 179710 689 8228 25\n", "2020-05-21 179021 548 8203 59\n", "2020-05-20 178473 695 8144 63\n", "2020-05-19 177778 1227 8081 78\n", "2020-05-18 176551 182 8003 41\n", "2020-05-17 176369 617 7962 24\n", "2020-05-16 175752 519 7938 41\n", "2020-05-15 175233 755 7897 13" ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "table = coronavirus.compose_dataframe_summary(cases, deaths)\n", "table.head(n=10)" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [], "source": [ "# save as markdown for easier inclusion in webpage\n", "table.head(n=10).to_markdown(open('2020-04-30-bbc-germany-increasing-table.md', \"tw\"))" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.7.6" } }, "nbformat": 4, "nbformat_minor": 4 }