{ "splitcode_version": "0.28.0", "call": "splitcode -c config.txt --nFastqs=2 --assign -o output_R1.fastq,output_R2.fastq --unassigned=unassigned_R1.fastq,unassigned_R2.fastq --outb=final_barcodes.fastq --mapping=mapping.txt --summary=summary.txt R1.fastq R2.fastq", "barcode_prefix": "", "n_fastqs": 2, "n_processed": 4, "n_reads_max": 4, "n_assigned": 3, "read_length_mean": [46.0, 100.0], "read_length_min": [46, 100], "read_length_max": [46, 100], "tags_info": { "n_tags": 5, "n_tag_ids": 5, "n_tag_groups": 2 }, "general_trimming_info": { "trim_5_bases": "", "trim_3_bases": "0,4", "filter_len": "", "n_reads_filtered_out": 0, "n_reads_filtered_out_assigned": 0, "n_reads_total_trimmed_5": [0, 0], "n_reads_total_trimmed_3": [0, 4], "n_bases_total_trimmed_5": [0, 0], "n_bases_total_trimmed_3": [0, 16], "n_reads_total_trimmed_5_assigned": [0, 0], "n_reads_total_trimmed_3_assigned": [0, 3], "n_bases_total_trimmed_5_assigned": [0, 0], "n_bases_total_trimmed_3_assigned": [0, 12], "final_read_length_mean_assigned": [46.0, 96.0], "final_read_length_min_assigned": [46, 96], "final_read_length_max_assigned": [46, 96] }, "quality_trimming_info": { "quality_trim_5": 0, "quality_trim_3": 0, "quality_trim_pre": 0, "quality_trim_naive": 0, "quality_trim_threshold": -1, "quality_phred64": 0, "n_reads_quality_trimmed_5": [0, 0], "n_reads_quality_trimmed_3": [0, 0], "n_bases_quality_trimmed_5": [0, 0], "n_bases_quality_trimmed_3": [0, 0], "n_reads_quality_trimmed_5_assigned": [0, 0], "n_reads_quality_trimmed_3_assigned": [0, 0], "n_bases_quality_trimmed_5_assigned": [0, 0], "n_bases_quality_trimmed_3_assigned": [0, 0] }, "tag_trimming_info": [ ], "extraction_info": [ { "name": "umi", "n_reads": 2, "length_mean": 8.0, "length_min": 8, "length_max": 8 } ], "developer_use_info": { "tags_vector_size": 5, "tags_map_size": 66, "num_elements_in_tags_map": 66, "assign_id_map_size": 2, "sub_assign_id_map_size": 0, "always_assign": 0 } }