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metabolites", "xrefs" : [ "ChEBI" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "chebi_ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_83056", "lbl" : "Daphnia magna metabolite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A Daphnia metabolite produced by the species Daphnia magna." }, "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Daphnia magna metabolites", "xrefs" : [ "ChEBI" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "chebi_ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_83057", "lbl" : "Daphnia metabolite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A crustacean metabolite produced by the genus of small planktonic arthropods, Daphnia" }, "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "Daphnia metabolites", "xrefs" : [ "ChEBI" ] } ], "xrefs" : [ { "val" : "Wikipedia:Daphnia" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "chebi_ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_84729", "lbl" : "hydroxyindoles", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any member of the class of indoles carrying at least one hydroxy group." }, "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "chebi_ontology" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CLM_1000041", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CLM_1000043", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CLM_1000056", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000000", "lbl" : "cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.", "xrefs" : [ "CARO:mah" ] }, "comments" : [ "The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one)." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/ubprop#_upper_level" ], "xrefs" : [ { "val" : "CALOHA:TS-2035" }, { "val" : "FMA:68646" }, { "val" : "GO:0005623" }, { "val" : "KUPO:0000002" }, { "val" : "MESH:D002477" }, { "val" : "VHOG:0001533" }, { "val" : "WBbt:0004017" }, { "val" : "XAO:0003012" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000005", "lbl" : "neural crest derived fibroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any fibroblast that is derived from the neural crest.", "xrefs" : [ "https://orcid.org/0000-0001-5208-3432" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fibroblast neural crest derived" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000006", "lbl" : "neuronal receptor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any sensory receptor cell that is a(n) neuron and is capable of some detection of stimulus involved in sensory perception.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neuronal receptor cell (sensu Animalia)" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000007", "lbl" : "early embryonic cell (metazoa)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell found in the embryo before the formation of all the gem layers is complete.", "xrefs" : [ "GOC:tfm" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000008", "lbl" : "migratory cranial neural crest cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.", "xrefs" : [ "ZFA:0007091", "https://orcid.org/0000-0001-5208-3432" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000011", "lbl" : "migratory trunk neural crest cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.", "xrefs" : [ "ZFA:0007095", "https://orcid.org/0000-0001-5208-3432" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000014", "lbl" : "germ line stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stem cell that is the precursor of gametes.", "xrefs" : [ "doi:10.1016/j.stem.2012.05.016" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "germline stem cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000021", "lbl" : "female germ cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Female germ cell is a germ cell that supports female gamete production.", "xrefs" : [ "GOC:tfm", "PMID:11023867", "PMID:20454446" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "MA:0000388" }, { "val" : "VHOG:0001530" }, { "val" : "ncithesaurus:Egg" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000022", "lbl" : "female germ line stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stem cell that is the precursor of female gametes.", "xrefs" : [ "doi:10.1016/j.stem.2012.05.016" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000023", "lbl" : "oocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "A female germ cell that has entered meiosis.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "oogonium" } ], "xrefs" : [ { "val" : "BTO:0000964" }, { "val" : "CALOHA:TS-0711" }, { "val" : "FMA:18644" }, { "val" : "MESH:D009865" }, { "val" : "WBbt:0006797" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000024", "lbl" : "oogonial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "FMA:83673" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000025", "lbl" : "egg cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mature oocyte" }, { "pred" : "hasExactSynonym", "val" : "ovum" } ], "xrefs" : [ { "val" : "BTO:0000369" }, { "val" : "BTO:0003801" }, { "val" : "CALOHA:TS-2191" }, { "val" : "FMA:67343" }, { "val" : "MESH:D010063" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000027", "lbl" : "smooth muscle cell neural crest derived", "type" : "CLASS", "meta" : { "definition" : { "val" : "A smooth muscle cell derived from the neural crest.", "xrefs" : [ "https://orcid.org/0000-0001-5208-3432" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000029", "lbl" : "neural crest derived neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any neuron that develops from some migratory neural crest cell.", "xrefs" : [ "FBC:Autogenerated" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neuron neural crest derived" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000030", "lbl" : "glioblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A non-terminally differentiated cell that develops form the neuroectoderm. Glioblast has the potential to differentiate into various types of glial cells, including astrocytes and oligodendrocytes.", "xrefs" : [ "PMID:37824650", "Wikipedia:Glioblast" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000031", "lbl" : "neuroblast (sensu Vertebrata)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that will develop into a neuron often after a migration phase.", "xrefs" : [ "GOC:NV", "http://en.wikipedia.org/wiki/Neuroblast" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neuroblast" } ], "xrefs" : [ { "val" : "BTO:0000930" }, { "val" : "FMA:70563" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000034", "lbl" : "stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.", "xrefs" : [ "GOC:tfm", "MESH:D013234" ] }, "comments" : [ "This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "animal stem cell" } ], "xrefs" : [ { "val" : "CALOHA:TS-2086" }, { "val" : "FMA:63368" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000035", "lbl" : "single fate stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stem cell that self-renews as well as give rise to a single mature cell type.", "xrefs" : [ "GOC:tfm" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "unipotent stem cell" }, { "pred" : "hasExactSynonym", "val" : "unipotential stem cell" } ], "xrefs" : [ { "val" : "FMA:70569" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000036", "lbl" : "epithelial fate stem cell", "type" : "CLASS", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelial stem cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000037", "lbl" : "hematopoietic stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119.", "xrefs" : [ "GOC:add", "GOC:dsd", "GOC:tfm", "PMID:19022770", "http://en.wikipedia.org/wiki/Hematopoietic_stem_cell" ] }, "comments" : [ "Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blood forming stem cell" }, { "pred" : "hasExactSynonym", "val" : "hemopoietic stem cell" }, { "pred" : "hasRelatedSynonym", "val" : "colony forming unit hematopoietic" } ], "xrefs" : [ { "val" : "BTO:0000725" }, { "val" : "CALOHA:TS-0448" }, { "val" : "FMA:86475" }, { "val" : "MESH:D006412" }, { "val" : "VHOG:0001485" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000038", "lbl" : "erythroid progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A progenitor cell committed to the erythroid lineage.", "xrefs" : [ "GOC:add", "ISBN:0721601464" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "blast forming unit erythroid" }, { "pred" : "hasRelatedSynonym", "val" : "burst forming unit erythroid" }, { "pred" : "hasRelatedSynonym", "val" : "colony forming unit erythroid" }, { "pred" : "hasRelatedSynonym", "val" : "erythroid stem cell" } ], "xrefs" : [ { "val" : "BTO:0004911" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000039", "lbl" : "germ line cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "comments" : [ "Originally this term had some plant germ line cell children." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/ubprop#_upper_level" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000048", "lbl" : "multi fate stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stem cell that can give rise to multiple lineages of cells.", "xrefs" : [ "GOC:add" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "multi-fate stem cell" }, { "pred" : "hasExactSynonym", "val" : "multifate stem cell" }, { "pred" : "hasExactSynonym", "val" : "multipotent cell" }, { "pred" : "hasExactSynonym", "val" : "multipotent stem cell" } ], "xrefs" : [ { "val" : "FMA:84789" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000049", "lbl" : "common myeloid progenitor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.", "xrefs" : [ "GOC:add", "ISBN:0878932437", "MESH:D023461" ] }, "comments" : [ "This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059)." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "common myeloid precursor" }, { "pred" : "hasRelatedSynonym", "val" : "colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte", "xrefs" : [ "ISBN:0878932437" ] }, { "pred" : "hasRelatedSynonym", "val" : "multipotential myeloid stem cell", "xrefs" : [ "ISBN:0878932437" ] }, { "pred" : "hasRelatedSynonym", "val" : "myeloid stem cell", "xrefs" : [ "ISBN:0878932437" ] }, { "pred" : "hasRelatedSynonym", "val" : "pluripotent stem cell (bone marrow)", "xrefs" : [ "ISBN:0878932437" ] } ], "xrefs" : [ { "val" : "BTO:0004730" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000050", "lbl" : "megakaryocyte-erythroid progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A progenitor cell committed to the megakaryocyte and erythroid lineages.", "xrefs" : [ "GOC:add", "GOC:dsd", "GOC:tfm", "MESH:D055015", "PMID:16647566", "http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell" ] }, "comments" : [ "MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CFU-EM" }, { "pred" : "hasExactSynonym", "val" : "CFU-MegE" }, { "pred" : "hasExactSynonym", "val" : "MEP" }, { "pred" : "hasExactSynonym", "val" : "Meg/E progenitor" }, { "pred" : "hasExactSynonym", "val" : "colony forming unit erythroid megakaryocyte" }, { "pred" : "hasExactSynonym", "val" : "megakaryocyte/erythrocyte progenitor" }, { "pred" : "hasExactSynonym", "val" : "megakaryocyte/erythroid progenitor cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000051", "lbl" : "common lymphoid progenitor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A oligopotent progenitor cell committed to the lymphoid lineage.", "xrefs" : [ "GOC:add", "GOC:dsd", "GOC:tfm", "PMID:10407577", "PMID:16551251" ] }, "comments" : [ "CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "common lymphocyte precursor" }, { "pred" : "hasExactSynonym", "val" : "common lymphocyte progenitor" }, { "pred" : "hasExactSynonym", "val" : "common lymphoid precursor" }, { "pred" : "hasRelatedSynonym", "val" : "committed lymphopoietic stem cell" }, { "pred" : "hasRelatedSynonym", "val" : "early lymphocyte progenitor" }, { "pred" : "hasRelatedSynonym", "val" : "lymphoid stem cell" }, { "pred" : "hasRelatedSynonym", "val" : "lymphopoietic stem cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000052", "lbl" : "totipotent stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stem cell from which all cells of the body can form.", "xrefs" : [ "GOC:add", "GOC:tfm" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "totipotential stem cell" } ], "xrefs" : [ { "val" : "FMA:84790" }, { "val" : "MESH:D039901" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000055", "lbl" : "non-terminally differentiated cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A precursor cell with a limited number of potential fates.", "xrefs" : [ "SANBI:mhl" ] }, "comments" : [ "define using PATO mulit-potent or oligopotent?" ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blast cell" } ], "xrefs" : [ { "val" : "BTO:0000125" }, { "val" : "FMA:84782" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000056", "lbl" : "myoblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair.", "xrefs" : [ "GOC:tfm", "MESH:D032446", "PMID:21849021" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0000222" }, { "val" : "CALOHA:TS-0650" }, { "val" : "FMA:70335" }, { "val" : "VHOG:0001529" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000057", "lbl" : "fibroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.", "xrefs" : [ "ISBN:0517223651", "MESH:D005347", "http://en.wikipedia.org/wiki/Fibroblast" ] }, "comments" : [ "These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "xrefs" : [ { "val" : "BTO:0000452" }, { "val" : "CALOHA:TS-0362" }, { "val" : "FMA:63877" }, { "val" : "NCIT:C12482" }, { "val" : "VHOG:0001482" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000058", "lbl" : "chondroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell.", "xrefs" : [ "GOC:tfm", "GO_REF:0000034", "ISBN:0618947256" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chrondoplast" } ], "xrefs" : [ { "val" : "BTO:0003607" }, { "val" : "FMA:66783" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000064", "lbl" : "ciliated cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that has a filiform extrusion of the cell surface.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "VHOG:0001532" }, { "val" : "XAO:0000031" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000066", "lbl" : "epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.", "xrefs" : [ "FB:ma", "GOC:tfm", "MESH:D004847" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epitheliocyte" } ], "xrefs" : [ { "val" : "BTO:0000414" }, { "val" : "CALOHA:TS-2026" }, { "val" : "CARO:0000077" }, { "val" : "FMA:66768" }, { "val" : "WBbt:0003672" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000067", "lbl" : "ciliated epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial cell that has a cilia.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "FMA:70605" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000068", "lbl" : "duct epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial cell that is part of a duct.", "xrefs" : [ "https://orcid.org/0000-0001-5208-3432" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000069", "lbl" : "branched duct epithelial cell", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000071", "lbl" : "blood vessel endothelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endothelial cell that lines the vasculature.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000075", "lbl" : "columnar/cuboidal epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.", "xrefs" : [ "GO:0002065", "https://orcid.org/0000-0001-5208-3432" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000076", "lbl" : "squamous epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any epithelial cell that is part of some squamous epithelium.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "CALOHA:TS-1249" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000077", "lbl" : "mesothelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flat, squamous-like epithelial cell of mesodermal origin. It forms the mesothelium, which lines the body's serous cavities including the pleural, peritoneal, and pericardial spaces. This cell plays a crucial role in synthesizing and secreting lubricants, such as glycosaminoglycans and surfactants, which minimize friction between adjacent tissues during movement.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544", "PMID:26106328" ] }, "comments" : [ "Mesothelial cells, which morphologically resemble squamous epithelial cells, express both epithelial markers (cytokeratins) and mesenchymal markers (vimentin), reflecting their mesodermal origin. They feature surface microvilli and apical-basal polarity. Under certain conditions, they can undergo mesothelial-to-mesenchymal transition. These cells also produce extracellular matrix proteins, maintain serosal homeostasis, and facilitate fluid transport." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesotheliocyte" } ], "xrefs" : [ { "val" : "FMA:66773" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000080", "lbl" : "circulating cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell which moves among different tissues of the body, via blood, lymph, or other medium.", "xrefs" : [ "GOC:add" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000081", "lbl" : "blood cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell found predominately in the blood.", "xrefs" : [ "GOC:add", "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim" ], "xrefs" : [ { "val" : "FMA:62844" }, { "val" : "MESH:D001773" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000082", "lbl" : "epithelial cell of lung", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial cell of the lung.", "xrefs" : [ "https://orcid.org/0000-0001-5208-3432" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lung epithelial cell" } ], "xrefs" : [ { "val" : "BTO:0004299" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000095", "lbl" : "neuron associated cell", "type" : "CLASS", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000098", "lbl" : "sensory epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells.", "xrefs" : [ "GOC:tfm", "ISBN:0517223651", "ISBN:0721662544" ] }, "comments" : [ "The term \"neuroepithelial cell\" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "neuroepithelial cell" } ], "xrefs" : [ { "val" : "BTO:0004301" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000099", "lbl" : "interneuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.", "xrefs" : [ "GOC:tfm", "MESH:D007395" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "CNS interneuron" } ], "xrefs" : [ { "val" : "BTO:0003811" }, { "val" : "FMA:67313" }, { "val" : "WBbt:0005113" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000100", "lbl" : "motor neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement.", "xrefs" : [ "MESH:D009046", "PMID:16875686" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "motoneuron" } ], "xrefs" : [ { "val" : "BTO:0000312" }, { "val" : "FMA:83617" }, { "val" : "WBbt:0005409" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000101", "lbl" : "sensory neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any neuron having a sensory function; an afferent neuron conveying sensory impulses.", "xrefs" : [ "ISBN:0721662544" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "xrefs" : [ { "val" : "BTO:0001037" }, { "val" : "FMA:84649" }, { "val" : "MESH:D011984" }, { "val" : "WBbt:0005759" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000103", "lbl" : "bipolar neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body.", "xrefs" : [ "GOC:tfm", "ISBN:0444009442" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#BDS_subset", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "FMA:67282" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000107", "lbl" : "autonomic neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron whose cell body is within an autonomic ganglion.", "xrefs" : [ "GOC:tfm" ] }, "xrefs" : [ { "val" : "FMA:80121" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000108", "lbl" : "cholinergic neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron that uses acetylcholine as a vesicular neurotransmitter.", "xrefs" : [ "GOC:tfm" ] }, "xrefs" : [ { "val" : "BTO:0004902" }, { "val" : "FMA:84796" }, { "val" : "MESH:D059329" }, { "val" : "WBbt:0006840" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000115", "lbl" : "endothelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.", "xrefs" : [ "GOC:tfm", "MESH:D042783", "PMID:21275341", "http://en.wikipedia.org/wiki/Endothelial_cell", "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3364936&group_id=36855" ] }, "comments" : [ "From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard]." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "endotheliocyte" } ], "xrefs" : [ { "val" : "BTO:0001176" }, { "val" : "CALOHA:TS-0278" }, { "val" : "FMA:66772" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000122", "lbl" : "stellate neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron that has dendritic processes radiating from the cell body forming a star-like shape.", "xrefs" : [ "ISBN:9780123973481" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#BDS_subset", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0002316" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000123", "lbl" : "neuron associated cell (sensu Vertebrata)", "type" : "CLASS", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000125", "lbl" : "glial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.", "xrefs" : [ "MESH:D009457" ] }, "comments" : [ "Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571" ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neuroglial cell" }, { "pred" : "hasRelatedSynonym", "val" : "neuroglia" } ], "xrefs" : [ { "val" : "BTO:0002606" }, { "val" : "CALOHA:TS-0415" }, { "val" : "FMA:54536" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000125" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000126", "lbl" : "macroglial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuroglial cell of ectodermal origin, i.e., the astrocytes and oligodendrocytes considered together.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "macrogliocyte" } ], "xrefs" : [ { "val" : "BTO:0000771" }, { "val" : "CALOHA:TS-2027" }, { "val" : "FMA:54538" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000128", "lbl" : "oligodendrocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system.", "xrefs" : [ "MESH:D009836", "http://en.wikipedia.org/wiki/Oligodendrocyte" ] }, "comments" : [ "Oligodendrocytes are reportedly MDP-positive and CD4-negative." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "OLs", "xrefs" : [ "PMID:8734446" ] }, { "pred" : "hasRelatedSynonym", "val" : "oligodendroglia" } ], "xrefs" : [ { "val" : "BTO:0000962" }, { "val" : "CALOHA:TS-0709" }, { "val" : "FMA:54540" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000133", "lbl" : "neurectodermal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Ectoderm destined to be nervous tissue.", "xrefs" : [ "GOC:tfm", "ISBN:068340007X" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neurectoderm cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000134", "lbl" : "mesenchymal stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. In humans, this cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs.", "xrefs" : [ "FB:ma", "GOC:dsd", "PMCID:PMC2613570", "PMID:10102814", "PMID:16923606", "PMID:17986482", "PMID:19960544", "http://en.wikipedia.org/wiki/Mesenchymal_stem_cell", "http://www.copewithcytokines.de/cope.cgi?key=mesenchymal%20stem%20cells" ] }, "comments" : [ "Many but not all mesenchymal cells derive from the mesoderm. MSCs are reportedly CD3-negative, CD4-negative, CD5-negative, CD8-negative, CD11a-negative, CD11b-negative, CD14-negative, CD19-negative, CD29-positive, CD31-negative, CD34-negative, CD38-negative, CD40-negative, CD44-positive, CD45-negative, CD49-positive, CD54-positive, CD66b-negative, CD79a-negative, CD80-negative, CD102-positive, CD106-positive, CD117-positive, CD121a-positive, CD121b-positive, CD123-positive, CD124-positive, CD133-negative, CD146-positive, CD166-positive, CD271-positive, B220-negative, Gr1-negative, MHCI-positive, MHCII-negative, SSEA4-negative, sca1-positive, Ter119-negative, and glycophorin A-negative. Cultured MSCs are capable of producing stem cell factor, IL7, IL8, IL11, TGF-beta, cofilin, galectin-1, laminin-receptor 1, cyclophilin A, and MMP-2." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "bone marrow stromal cells" }, { "pred" : "hasNarrowSynonym", "val" : "colony-forming unit-fibroblast" }, { "pred" : "hasNarrowSynonym", "val" : "marrow stromal cells", "xrefs" : [ "PMID:11378515" ] }, { "pred" : "hasRelatedSynonym", "val" : "mesenchymal precursor cell" }, { "pred" : "hasRelatedSynonym", "val" : "mesenchymal stem cell" }, { "pred" : "hasRelatedSynonym", "val" : "mesenchymal stromal cell" } ], "xrefs" : [ { "val" : "BTO:0002625" }, { "val" : "BTO:0003298" }, { "val" : "FMA:70546" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000136", "lbl" : "adipocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides.", "xrefs" : [ "MESH:D017667" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "adipose cell" }, { "pred" : "hasExactSynonym", "val" : "fat cell" } ], "xrefs" : [ { "val" : "BTO:0000443" }, { "val" : "CALOHA:TS-0012" }, { "val" : "FMA:63880" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000138", "lbl" : "chondrocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "Skeletogenic cell that is terminally differentiated, secretes an avascular, GAG-rich matrix, is embedded in cartilage tissue matrix, retains the ability to divide, and develops from a chondroblast cell.", "xrefs" : [ "GO_REF:0000034", "MESH:D019902" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cartilage cell" } ], "xrefs" : [ { "val" : "BTO:0000249" }, { "val" : "CALOHA:TS-0138" }, { "val" : "FMA:66782" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000147", "lbl" : "pigment cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pigment cell is a cell that contains pigment granules.", "xrefs" : [ "GOC:tfm" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chromatocyte" }, { "pred" : "hasExactSynonym", "val" : "chromatophore" } ], "xrefs" : [ { "val" : "VHOG:0001678" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000149", "lbl" : "visual pigment cell", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "pigment cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000150", "lbl" : "glandular secretory epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial cell, located in a gland, that is specialised for the synthesis and secretion of specific biomolecules, such as hormones, or mucous.", "xrefs" : [ "GOC:tfm", "ORCID:0000-0002-7073-9172" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glandular epithelial cell" } ], "xrefs" : [ { "val" : "CALOHA:TS-2085" }, { "val" : "FMA:86494" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000151", "lbl" : "secretory cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that specializes in controlled release of one or more substances.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0003659" }, { "val" : "FMA:86916" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000152", "lbl" : "exocrine cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.", "xrefs" : [ "ISBN:0198547684" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim" ], "xrefs" : [ { "val" : "FMA:16014" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000153", "lbl" : "glycosaminoglycan secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that secretes glycosaminoglycans.", "xrefs" : [ "GOC:tfm" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "GAG secreting cell" }, { "pred" : "hasNarrowSynonym", "val" : "hyaluronic acid secreting cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000154", "lbl" : "protein secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any secretory cell that is capable of some protein secretion.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000159", "lbl" : "seromucus secreting cell", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000163", "lbl" : "endocrine cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.", "xrefs" : [ "MESH:D055098" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "endocrinocyte" } ], "xrefs" : [ { "val" : "FMA:83809" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000164", "lbl" : "enteroendocrine cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas.", "xrefs" : [ "GOC:tfm", "SANBI:mhl" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0003865" }, { "val" : "FMA:62930" }, { "val" : "MESH:D019858" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000164" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000165", "lbl" : "neuroendocrine cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron that is capable of some hormone secretion in response to neuronal signals.", "xrefs" : [ "MESH:D055099" ] }, "comments" : [ "The neurosecretory cell is neither an ordinary neuron nor an endocrine cell, but a combination of both. Its neuronal features resemble those of ordinary neurons concerning both structure and function. The production of a visible secretory material marks the neurosecretory neuron as a gland cell, and the fact that extractable cellular products act in the manner of hormones places it in the realm of endocrine elements. \n\nThe modern definition of neurosecretion has evolved to include the release of any neuronal secretory product from a neuron." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "neurosecretory cell" }, { "pred" : "hasRelatedSynonym", "val" : "neurosecretory neuron" } ], "xrefs" : [ { "val" : "BTO:0002691" }, { "val" : "FMA:83810" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000167", "lbl" : "peptide hormone secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any secretory cell that is capable of some peptide hormone secretion.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000170", "lbl" : "glucagon secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that secretes glucagon.", "xrefs" : [ "GOC:tfm" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glucagon-secreting cell" } ], "xrefs" : [ { "val" : "FMA:84045" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000172", "lbl" : "somatostatin secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any secretory cell that is capable of some somatostatin secretion.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000174", "lbl" : "steroid hormone secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any secretory cell that is capable of some steroid hormone secretion.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000183", "lbl" : "contractile cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell whose primary function is to shorten.", "xrefs" : [ "FB:ma" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000187", "lbl" : "muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.", "xrefs" : [ "MESH:D032342" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "muscle fiber" }, { "pred" : "hasExactSynonym", "val" : "myocyte" } ], "xrefs" : [ { "val" : "BTO:0000888" }, { "val" : "BTO:0000902" }, { "val" : "CALOHA:TS-2032" }, { "val" : "FMA:67328" }, { "val" : "WBbt:0003675" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000188", "lbl" : "cell of skeletal muscle", "type" : "CLASS", "meta" : { "definition" : { "val" : "A somatic cell located in skeletal muscle.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skeletal muscle cell" } ], "xrefs" : [ { "val" : "BTO:0004392" }, { "val" : "CALOHA:TS-2158" }, { "val" : "FMA:9727" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000188" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000192", "lbl" : "smooth muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).", "xrefs" : [ "MESH:D032389", "PMID:9315361", "http://en.wikipedia.org/wiki/Smooth_muscle_cell" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "non-striated muscle cell" }, { "pred" : "hasExactSynonym", "val" : "SMCs", "xrefs" : [ "PMID:9315361" ] }, { "pred" : "hasExactSynonym", "val" : "myocytes, smooth muscle", "xrefs" : [ "MESH:D032389" ] }, { "pred" : "hasExactSynonym", "val" : "smooth muscle fiber" } ], "xrefs" : [ { "val" : "BTO:0004576" }, { "val" : "CALOHA:TS-2159" }, { "val" : "FMA:14072" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000192" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000197", "lbl" : "sensory receptor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that is capable of detection of a stimulus involved in sensory perception." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "receptor cell" } ], "xrefs" : [ { "val" : "MESH:D011984" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000206", "lbl" : "chemoreceptor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood.", "xrefs" : [ "MESH:D002628" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000209", "lbl" : "taste receptor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specialized cell involved in gustatory sensory perception.", "xrefs" : [ "GOC:tfm", "ISBN:0618947256" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "taste bud cell" } ], "xrefs" : [ { "val" : "FMA:67910" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000210", "lbl" : "photoreceptor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell specialized in detecting light stimuli that are involved in visual perception.", "xrefs" : [ "MESH:D010786" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0001060" }, { "val" : "CALOHA:TS-0868" }, { "val" : "FMA:86740" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000211", "lbl" : "electrically active cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell whose function is determined by the generation or the reception of an electric signal.", "xrefs" : [ "FB:ma" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000213", "lbl" : "lining cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.", "xrefs" : [ "JB:jb" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "boundary cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000214", "lbl" : "synovial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell located in the synovial joint." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "synoviocyte" } ], "xrefs" : [ { "val" : "CALOHA:TS-0995" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000215", "lbl" : "barrier cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell whose primary function is to prevent the transport of stuff across compartments.", "xrefs" : [ "JB:jb" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000217", "lbl" : "insulating cell", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000218", "lbl" : "myelinating Schwann cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons.", "xrefs" : [ "GOC:cvs", "GOC:tfm", "MESH:D012583" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "Schwann cell" }, { "pred" : "hasBroadSynonym", "val" : "peripheral neuroglial cell" }, { "pred" : "hasExactSynonym", "val" : "neurilemmal cell" } ], "xrefs" : [ { "val" : "CALOHA:TS-0898" }, { "val" : "FMA:62121" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000219", "lbl" : "motile cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that moves by its own activities.", "xrefs" : [ "FB:ma" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000221", "lbl" : "ectodermal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the outer of the three germ layers of the embryo.", "xrefs" : [ "MESH:D004475" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "ectoderm cell" } ], "xrefs" : [ { "val" : "FMA:72549" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000222", "lbl" : "mesodermal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the middle germ layer of the embryo.", "xrefs" : [ "MESH:D008648" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesoblast" }, { "pred" : "hasExactSynonym", "val" : "mesoderm cell" } ], "xrefs" : [ { "val" : "FMA:72554" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000222" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000223", "lbl" : "endodermal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the inner of the three germ layers of the embryo.", "xrefs" : [ "MESH:D004707" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "endoderm cell" } ], "xrefs" : [ { "val" : "FMA:72555" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000225", "lbl" : "anucleate cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that lacks a nucleus.", "xrefs" : [ "FB:ma" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "non-nucleated cell" } ], "xrefs" : [ { "val" : "FMA:68647" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000226", "lbl" : "single nucleate cell", "type" : "CLASS", "meta" : { "definition" 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In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.", "xrefs" : [ "GOC:tfm", "MESH:D004912" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "RBC" }, { "pred" : "hasExactSynonym", "val" : "red blood cell" } ], "xrefs" : [ { "val" : "BTO:0000424" }, { "val" : "CALOHA:TS-0290" }, { "val" : "FMA:81100" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000255", "lbl" : "eukaryotic cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any cell that in taxon some Eukaryota.", "xrefs" : [ "FBC:Autogenerated" ] }, "xrefs" : [ { "val" : "MESH:D005057" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000257", "lbl" : "Eumycetozoan cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any cell that in taxon some Eumycetozoa.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000287", "lbl" : "eye photoreceptor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any photoreceptor cell that is part of some eye.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#eye_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000293", "lbl" : "structural cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.", "xrefs" : [ "TAIR:sr" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000300", "lbl" : "gamete", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mature sexual reproductive cell having a single set of unpaired chromosomes.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "haploid nucleated cell" }, { "pred" : "hasRelatedSynonym", "val" : "haploid germ cell" } ], "xrefs" : [ { "val" : "CALOHA:TS-0395" }, { "val" : "FMA:18649" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000300" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000306", "lbl" : "crystallin accumulating cell", "type" : "CLASS", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/cl#eye_upper_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lens cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000307", "lbl" : "tracheal epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial cell found in the trachea.", "xrefs" : [ "GOC:tfm" ] }, "comments" : [ "This class is for the vertebrate tracheal structure. For the analagous insect cell type, see 'respiratory tube epithelial cell'" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tracheocyte" } ], "xrefs" : [ { "val" : "FMA:74793" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000313", "lbl" : "serous secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid.", "xrefs" : [ "GOC:tfm", "ISBN:0517223651", "ISBN:0721662544" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "serous cell" } ], "xrefs" : [ { "val" : "BTO:0003687" }, { "val" : "FMA:62511" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000325", "lbl" : "stuff accumulating cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that is specialised to accumulate a particular substance(s).", "xrefs" : [ "FB:ma" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/ubprop#_upper_level" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000327", "lbl" : "extracellular matrix secreting cell", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000329", "lbl" : "oxygen accumulating cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any cell that is capable of some oxygen transport.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000333", "lbl" : "migratory neural crest cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.", "xrefs" : [ "doi:10.1016/j.stem.2015.02.017" ] }, "xrefs" : [ { "val" : "FMA:86667" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000335", "lbl" : "mesenchyme condensation cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors.", "xrefs" : [ "GOC:tfm", "PMID:5025404" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000339", "lbl" : "glioblast (sensu Vertebrata)", "type" : "CLASS", "meta" : { "definition" : { "val" : "An early neural cell developing from the early ependymal cell of the neural tube.", "xrefs" : [ "GOC:tfm", "ISBN:0618947256" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "spongioblast" } ], "xrefs" : [ { "val" : "FMA:70564" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000347", "lbl" : "scleral cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the sclera of the eye.", "xrefs" : [ "GOC:add" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#eye_upper_slim" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000348", "lbl" : "choroidal cell of the eye", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural cell that is part of optic choroid.", "xrefs" : [ "GOC:add" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#eye_upper_slim" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000349", "lbl" : "extraembryonic cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any cell that is part of some extraembryonic structure.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000351", "lbl" : "trophoblast cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An extraembryonic cell that develops from a trophectodermal cell. This cell is found in the outer layer of the blastocyst and can invade other structures in the uterus once the blastocyst implants into the uterine wall. A trophoblast cell is involved in the implantation of the embryo into the uterine wall, placental formation, remodelling of maternal vasculature in the uterus, nutrient and gas exchange, hormone production, and immune modulation to support fetal development.", "xrefs" : [ "GOC:tfm", "MESH:D014327", "PMID:37630754", "doi:10.1007/978-3-030-84725-8" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "trophoblastic cell", "xrefs" : [ "doi:10.1007/978-3-030-84725-8" ] } ], "xrefs" : [ { "val" : "FMA:83028" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000351" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000352", "lbl" : "epiblast cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation.", "xrefs" : [ "GOC:tfm", "ISBN:0618947256" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000353", "lbl" : "blastoderm cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An undifferentiated cell produced by early cleavages of the fertilized egg (zygote).", "xrefs" : [ "MESH:D001756" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blastomere" } ], "xrefs" : [ { "val" : "BTO:0001473" }, { "val" : "FMA:72551" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000355", "lbl" : "multi-potent skeletal muscle stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. 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This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers.", "xrefs" : [ "ISBN:0721601464", "PMID:1638021" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "rubriblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasRelatedSynonym", "val" : "pronormoblast" } ], "xrefs" : [ { "val" : "FMA:83518" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000549", "lbl" : "basophilic erythroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers.", "xrefs" : [ "GOC:tfm", "ISBN:0721601464" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "basophilic normoblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "early erythroblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "early normoblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "prorubricyte", "xrefs" : [ "ISBN:0721601464" ] } ], "xrefs" : [ { "val" : "FMA:83505" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000550", "lbl" : "polychromatophilic erythroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers.", "xrefs" : [ "ISBN:0721601464" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "intermediate erythroblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "intermediate normoblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "polychromatic erythroblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "polychromatic normoblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "polychromatophilic normoblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "rubricyte", "xrefs" : [ "ISBN:0721601464" ] } ], "xrefs" : [ { "val" : "FMA:83506" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000552", "lbl" : "orthochromatic erythroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated.", "xrefs" : [ "ISBN:0721601464" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "acidophilic erythroblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "eosinophilic erythroblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "late erythoblast" }, { "pred" : "hasExactSynonym", "val" : "orthochromatic normoblast", "xrefs" : [ "ISBN:0721601464" ] }, { "pred" : "hasExactSynonym", "val" : "pyknotic eto enrythroblast", "xrefs" : [ "ISBN:0721601464" ] } ], "xrefs" : [ { "val" : "FMA:84646" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000553", "lbl" : "megakaryocyte progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative).", "xrefs" : [ "GOC:dsd", "GOC:tfm", "ISBN:0721601464" ] }, "comments" : [ "Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "CFU-Meg", "xrefs" : [ "PMID:11722431", "PMID:12482498" ] }, { "pred" : "hasExactSynonym", "val" : "Meg-CFC", "xrefs" : [ "PMCID:PMC1794060" ] }, { "pred" : "hasExactSynonym", "val" : "MkP", "xrefs" : [ "PMID:21116988" ] }, { "pred" : "hasExactSynonym", "val" : "colony-forming unit-megakaryocyte" }, { "pred" : "hasExactSynonym", "val" : "megacaryoblast" }, { "pred" : "hasExactSynonym", "val" : "megacaryocyte progenitor cell" }, { "pred" : "hasExactSynonym", "val" : "megakaryoblast" }, { "pred" : "hasExactSynonym", "val" : "megakaryocytic progenitor cell", "xrefs" : [ "PMID:12482498" ] }, { "pred" : "hasRelatedSynonym", "val" : "promegacaryocyte" }, { "pred" : "hasRelatedSynonym", "val" : "promegakaryocyte" } ], "xrefs" : [ { "val" : "BTO:0001164" }, { "val" : "CALOHA:TS-0610" }, { "val" : "FMA:84235" }, { "val" : "MESH:D055016" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000556", "lbl" : "megakaryocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "A large hematopoietic cell (50 to 100 micron) with a lobated nucleus. Once mature, this cell undergoes multiple rounds of endomitosis and cytoplasmic restructuring to allow platelet formation and release.", "xrefs" : [ "ISBN:0721601464", "MESH:D008533", "PMID:31043076", "http://en.wikipedia.org/wiki/Megakaryocyte" ] }, "comments" : [ "Megakaryocytes are reportedly CD181-positive and CD182-positive." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "megacaryocyte" }, { "pred" : "hasExactSynonym", "val" : "megalocaryocyte" }, { "pred" : "hasExactSynonym", "val" : "megalokaryocyte" } ], "xrefs" : [ { "val" : "BTO:0000843" }, { "val" : "CALOHA:TS-0611" }, { "val" : "FMA:83555" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000558", "lbl" : "reticulocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds.", "xrefs" : [ "GOC:add", "GOC:tfm", "PMID:15946868", "PMID:2037622" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0001173" }, { "val" : "CALOHA:TS-0864" }, { "val" : "MESH:D012156" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000562", "lbl" : "nucleate erythrocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "An erythrocyte having a nucleus.", "xrefs" : [ "GOC:add", "GOc:tfm" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "RBC" }, { "pred" : "hasBroadSynonym", "val" : "red blood cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000566", "lbl" : "angioblastic mesenchymal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesenchymal stem cell capable of developing into blood vessel endothelium.", "xrefs" : [ "GOC:dsd", "GOC:tfm", "PMID:12768659" ] }, "comments" : [ "These cells are reportedly CD31-positive, CD34-positive, CD144-positive, CD309-positive, and TAL1-positive." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "angioblast" }, { "pred" : "hasExactSynonym", "val" : "chondroplast" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000569", "lbl" : "cardiac mesenchymal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field.", "xrefs" : [ "PMID:18816864" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000573", "lbl" : "retinal cone cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.", "xrefs" : [ "MESH:D017949" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cone", "xrefs" : [ "doi:10.1038/s41598-020-66092-9" ] } ], "xrefs" : [ { "val" : "BTO:0001036" }, { "val" : "CALOHA:TS-0866" }, { "val" : "FMA:67748" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000575", "lbl" : "corneal epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial cell of the cornea.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#eye_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "epithelial cell of cornea", "xrefs" : [ "FMA:70551" ] } ], "xrefs" : [ { "val" : "BTO:0004298" }, { "val" : "CALOHA:TS-0173" }, { "val" : "FMA:70551" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000586", "lbl" : "germ cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "The reproductive cell in multicellular organisms.", "xrefs" : [ "MESH:D005854" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0000535" }, { "val" : "NCIT:C12597" }, { "val" : "VHOG:0001534" }, { "val" : "WBbt:0006796" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000593", "lbl" : "androgen secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A steroid hormone secreting cell that secretes androgen.", "xrefs" : [ "GOC:tfm" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000595", "lbl" : "enucleate erythrocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "An erythrocyte lacking a nucleus.", "xrefs" : [ "GOC:add", "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "red blood cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000598", "lbl" : "pyramidal neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "Pyramidal neurons have a pyramid-shaped soma with a single axon, a large apical dendrite and multiple basal dendrites. The apex and an apical dendrite typically point toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their region. Pyramidal neurons are found in the cerebral cortex, the hippocampus, and the amygdala.", "xrefs" : [ "GOC:tfm", "MESH:D017966" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#BDS_subset", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "projection neuron" }, { "pred" : "hasExactSynonym", "val" : "pyramidal cell" } ], "xrefs" : [ { "val" : "BTO:0003102" }, { "val" : "FMA:67310" }, { "val" : "FMA:86775" }, { "val" : "NIFSTD:sao862606388" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000604", "lbl" : "retinal rod cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.", "xrefs" : [ "MESH:D017948" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "rod", "xrefs" : [ "doi:10.1038/s41598-020-66092-9" ] } ], "xrefs" : [ { "val" : "BTO:0001024" }, { "val" : "CALOHA:TS-0870" }, { "val" : "FMA:67747" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000622", "lbl" : "acinar cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).", "xrefs" : [ "GOC:tfm", "http://www.copewithcytokines.de" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "acinic cell" }, { "pred" : "hasExactSynonym", "val" : "acinous cell" } ], "xrefs" : [ { "val" : "FMA:83625" }, { "val" : "MESH:D061354" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000622" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000630", "lbl" : "supporting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell whose primary function is to support other cell types.", "xrefs" : [ "FB:ma", "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "supportive cell" } ], "xrefs" : [ { "val" : "BTO:0002315" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000666", "lbl" : "fenestrated endothelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endothelial cell that has small pores, or fenestrations, which allow for the efficient exchange of substances between the blood and surrounding tissues.", "xrefs" : [ "DOI:10.1007/978-3-211-99390-3_133" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "window cell" } ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000666" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000667", "lbl" : "collagen secreting cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An extracellular matrix secreting cell that secretes collagen.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000670", "lbl" : "primordial germ cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.", "xrefs" : [ "GOC:tfm", "PMID:1381289" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gonocyte" }, { "pred" : "hasExactSynonym", "val" : "primitive germ cell" } ], "xrefs" : [ { "val" : "FMA:70567" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000675", "lbl" : "female gamete", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mature sexual reproductive cell of the female germline.", "xrefs" : [ "GOC:tfm" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000680", "lbl" : "muscle precursor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A non-terminally differentiated cell that is capable of developing into a muscle cell.", "xrefs" : [ "GOC:add" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000691", "lbl" : "stellate interneuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any interneuron that has characteristic some stellate morphology.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#BDS_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000693", "lbl" : "neurogliaform cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An interneuron that has spider-like appearance with a small round soma, a large number (7-10) of short, smooth, or slightly beaded primary dendrites that give rise to only a few secondary branches, and a branched axon that establishes a dense axonal mesh with thin shafts.", "xrefs" : [ "JB:jb", "PMID:17122314" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#BDS_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "NGF cell", "xrefs" : [ "PMID:18568015" ] }, { "pred" : "hasExactSynonym", "val" : "neuroglioform cell", "xrefs" : [ "PMID:3235828" ] }, { "pred" : "hasExactSynonym", "val" : "spiderweb cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000696", "lbl" : "PP cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that stores and secretes pancreatic polypeptide hormone.", "xrefs" : [ "GOC:tfm", "JB:jb", "PMID:15153415" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "type F enteroendocrine cell" } ], "xrefs" : [ { "val" : "FMA:62938" }, { "val" : "FMA:83409" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000696" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000710", "lbl" : "neurecto-epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Epithelial cells derived from neural plate and neural crest.", "xrefs" : [ "GOC:tfm" ] }, "comments" : [ "The term \"neuroepithelial cell\" is used to describe both this cell type and sensory epithelial cell (CL:0000098)." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "neuroepithelial cell" } ], "xrefs" : [ { "val" : "BTO:0004301" }, { "val" : "FMA:70557" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000723", "lbl" : "somatic stem cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stem cell that can give rise to cell types of the body other than those of the germ-line.", "xrefs" : [ "GO:0048103" ] }, "xrefs" : [ { "val" : "CALOHA:TS-2086" }, { "val" : "MESH:D053687" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000737", "lbl" : "striated muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Muscle cell which has as its direct parts myofilaments organized into sarcomeres.", "xrefs" : [ "GOC:tfm", "ISBN:0721662544" ] }, "xrefs" : [ { "val" : "BTO:0002916" }, { "val" : "CALOHA:TS-2157" }, { "val" : "FMA:86936" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000738", "lbl" : "leukocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.", "xrefs" : [ "GOC:add", "GOC:tfm", "ISBN:978-0-323-05290-0" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "leucocyte" }, { "pred" : "hasExactSynonym", "val" : "white blood cell" }, { "pred" : "hasRelatedSynonym", "val" : "immune cell" } ], "xrefs" : [ { "val" : "BTO:0000751" }, { "val" : "CALOHA:TS-0549" }, { "val" : "FMA:62852" }, { "val" : "MESH:D007962" }, { "val" : "NCIT:C12529" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000740", "lbl" : "retinal ganglion cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.", "xrefs" : [ "GOC:dph" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#eye_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gangliocyte" }, { "pred" : "hasExactSynonym", "val" : "ganglion cell of retina" } ], "xrefs" : [ { "val" : "BTO:0001800" }, { "val" : "FMA:67765" }, { "val" : "MESH:D012165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000746", "lbl" : "cardiac muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei.", "xrefs" : [ "GOC:mtg_cardiacconduct_nov11", "GOC:tfm", "ISBN:0323052908", "PMID:22426062", "PMID:4711263" ] }, "comments" : [ "This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cardiocyte" }, { "pred" : "hasExactSynonym", "val" : "cardiac muscle fiber", "xrefs" : [ "GO:0048739" ] }, { "pred" : "hasExactSynonym", "val" : "cardiac myocyte" }, { "pred" : "hasExactSynonym", "val" : "cardiomyocyte" }, { "pred" : "hasExactSynonym", "val" : "heart muscle cell" } ], "xrefs" : [ { "val" : "BTO:0001539" }, { "val" : "CALOHA:TS-0115" }, { "val" : "FMA:14067" }, { "val" : "MESH:D032383" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0000746" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000763", "lbl" : "myeloid cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.", "xrefs" : [ "GOC:add" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "BTO:0001441" }, { "val" : "CALOHA:TS-0647" }, { "val" : "MESH:D022423" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000764", "lbl" : "erythroid lineage cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A immature or mature cell in the lineage leading to and including erythrocytes.", "xrefs" : [ "GOC:add", "GOC:tfm" ] }, "comments" : [ "Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "erythropoietic cell" } ], "xrefs" : [ { "val" : "CALOHA:TS-0290" }, { "val" : "FMA:62845" }, { "val" : "FMA:83516" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000765", "lbl" : "erythroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers.", "xrefs" : [ "GOC:add", "ISBN:0721601464", "PMID:18174176" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "normoblast" } ], "xrefs" : [ { "val" : "BTO:0001571" }, { "val" : "CALOHA:TS-0289" }, { "val" : "FMA:83504" }, { "val" : "MESH:D004900" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000766", "lbl" : "myeloid leukocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the monocyte, granulocyte, or mast cell lineage.", "xrefs" : [ "GOC:add" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000837", "lbl" : "hematopoietic multipotent progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans.", "xrefs" : [ "GOC:add", "GOC:tfm", "PMID:19022770" ] }, "comments" : [ "Markers differ between mouse and human." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "MPP" }, { "pred" : "hasExactSynonym", "val" : "hemopoietic progenitor cell" } ], "xrefs" : [ { "val" : "BTO:0000725" }, { "val" : "CALOHA:TS-0448" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000838", "lbl" : "lymphoid lineage restricted progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A progenitor cell restricted to the lymphoid lineage.", "xrefs" : [ "GOC:add", "GOC:tfm" ] }, "comments" : [ "Note that this is a class of cell types, not an identified single cell type." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "lymphoid progenitor cell" } ], "xrefs" : [ { "val" : "BTO:0004731" }, { "val" : "CALOHA:TS-2025" }, { "val" : "FMA:70338" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000839", "lbl" : "myeloid lineage restricted progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A progenitor cell restricted to the myeloid lineage.", "xrefs" : [ "GOC:add", "GOC:tfm", "PMID:19022770" ] }, "comments" : [ "Note that this is a class of cell types, not an identified single cell type." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "myeloid progenitor cell" } ], "xrefs" : [ { "val" : "BTO:0004730" }, { "val" : "CALOHA:TS-2099" }, { "val" : "FMA:70339" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000842", "lbl" : "mononuclear cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A leukocyte with a single non-segmented nucleus in the mature form.", "xrefs" : [ "GOC:add" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mononuclear leukocyte" }, { "pred" : "hasNarrowSynonym", "val" : "peripheral blood mononuclear cell" } ], "xrefs" : [ { "val" : "BTO:0000878" }, { "val" : "CALOHA:TS-0768" }, { "val" : "FMA:86713" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000850", "lbl" : "serotonergic neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron that releases serotonin as a neurotransmitter.", "xrefs" : [ "SANBI:mhl" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "5-HT neuron" }, { "pred" : "hasExactSynonym", "val" : "5-hydroxytryptamine neuron" }, { "pred" : "hasRelatedSynonym", "val" : "serotinergic neuron" } ], "xrefs" : [ { "val" : "MESH:D059326" }, { "val" : "WBbt:0006837" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0000988", "lbl" : "hematopoietic cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of a hematopoietic lineage.", "xrefs" : [ "GOC:add", "GO_REF:0000031" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "haematopoietic cell" }, { "pred" : "hasExactSynonym", "val" : "haemopoietic cell" }, { "pred" : "hasExactSynonym", "val" : "hemopoietic cell" } ], "xrefs" : [ { "val" : "BTO:0000574" }, { "val" : "CALOHA:TS-2017" }, { "val" : "FMA:70366" }, { "val" : "FMA:83598" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0001035", "lbl" : "bone cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A connective tissue cell found in bone.", "xrefs" : [ "GOC:add", "GO_REF:0000034" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0001035" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-9990-8331" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-16T04:28:16Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0001060", "lbl" : "hematopoietic oligopotent progenitor cell, lineage-negative", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers.", "xrefs" : [ "GOC:tfm", "PMID:19022770" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-01-06T03:43:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0001061", "lbl" : "abnormal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell found in an organism or derived from an organism exhibiting a phenotype that deviates from the expected phenotype of any native cell type of that organism. Abnormal cells are typically found in disease states or disease models.", "xrefs" : [ "GOC:add", "GOC:cg", "GOC:wdd" ] }, "comments" : [ "https://github.com/obophenotype/cell-ontology/issues/448" ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12913" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-9990-8331" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2017-01-30T18:53:32Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0001063", "lbl" : "neoplastic cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism.", "xrefs" : [ "GOC:add", "GOC:cg", "GOC:wdd" ] }, "comments" : [ "https://github.com/obophenotype/cell-ontology/issues/448" ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "tumor cell" }, { "pred" : "hasRelatedSynonym", "val" : "tumour cell" } ], "xrefs" : [ { "val" : "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12922" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-9990-8331" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2017-01-30T19:16:26Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0001064", "lbl" : "malignant cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neoplastic cell that is capable of entering a surrounding tissue", "xrefs" : [ "GOC:add", "GOC:cg", "GOC:wdd" ] }, "comments" : [ "https://github.com/obophenotype/cell-ontology/issues/448" ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "cancer cell" } ], "xrefs" : [ { "val" : "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=C12917" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-9990-8331" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2017-01-30T19:39:12Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0001066", "lbl" : "erythroid progenitor cell, mammalian", "type" : "CLASS", "meta" : { "definition" : { "val" : "A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative).", "xrefs" : [ "GOC:add", "ISBN:0721601464" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "blast forming unit erythroid" }, { "pred" : "hasRelatedSynonym", "val" : "burst forming unit erythroid" }, { "pred" : "hasRelatedSynonym", "val" : "colony forming unit erythroid" }, { "pred" : "hasRelatedSynonym", "val" : "erythroid stem cell" } ], "xrefs" : [ { "val" : "BTO:0004911" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0002031", "lbl" : "hematopoietic lineage restricted progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells.", "xrefs" : [ "GOC:tfm", "PMID:19022770" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-01-06T03:43:20Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0002032", "lbl" : "hematopoietic oligopotent progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities.", "xrefs" : [ "GOC:tfm", "PMID:19022770", "https://orcid.org/0000-0001-5208-3432" ] }, "comments" : [ "This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060)." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-01-06T03:43:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0002067", "lbl" : "type A enteroendocrine cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An enteroendocrine cell that produces glucagon.", "xrefs" : [ "GOC:tfm", "ISBN:0412046911" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "FMA:62939" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0002067" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-10T10:48:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0002068", "lbl" : "Purkinje myocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter.", "xrefs" : [ "FMA:0412046911", "GOC:tfm", "PMID:19939742" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "Purkinje cell fiber" }, { "pred" : "hasExactSynonym", "val" : "Purkinje muscle cell" }, { "pred" : "hasExactSynonym", "val" : "myocytus conducens cardiacus" } ], "xrefs" : [ { "val" : "BTO:0001032" }, { "val" : "FMA:14146" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-06-28T08:36:15Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0002072", "lbl" : "nodal myocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. 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These motor neurons are all excitatory and cholinergic.", "xrefs" : [ "ZFIN:CVS" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "somatic motor neuron" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0007001", "lbl" : "skeletogenic cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized).", "xrefs" : [ "GO_REF:0000034" ] }, "comments" : [ "Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts)" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "scleroblast", "xrefs" : [ "GO_REF:0000034" ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-9114-8737" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-06-15T02:51:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0007004", "lbl" : "premigratory neural crest cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells.", "xrefs" : [ "UBERONREF:0000002" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-9114-8737" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-06-27T08:27:35Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0007009", "lbl" : "prechondroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells.", "xrefs" : [ "GO_REF:0000034" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-9114-8737" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-06-27T10:44:01Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008000", "lbl" : "non-striated muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any muscle cell in which the fibers are not organised into sarcomeres.", "xrefs" : [ "GOC:DOS" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008001", "lbl" : "hematopoietic precursor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any hematopoietic cell that is a precursor of some other hematopoietic cell type.", "xrefs" : [ "GOC:dos" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008002", "lbl" : "skeletal muscle fiber", "type" : "CLASS", "meta" : { "definition" : { "val" : "A transversely striated, synctial cell of skeletal muscle. It is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.", "xrefs" : [ "GOC:tfm", "ISBN:0323052908" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "MESH:D018485" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008007", "lbl" : "visceral muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A muscle cell that is part of some visceral muscle.", "xrefs" : [ "GOC:dos" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008008", "lbl" : "striated visceral muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods.", "xrefs" : [ "GOC:dos" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008009", "lbl" : "transversely striated visceral muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods.", "xrefs" : [ "GOC:dos" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008017", "lbl" : "adult skeletal muscle myoblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "A skeletal muscle myoblast that is part of a skeletal mucle. These cells are formed following acivation and division of skeletal muscle satellite cells. They form a transient population that is lost when they fuse to form skeletal muscle fibers.", "xrefs" : [ "PMID:23303905" ] }, "comments" : [ "The vast majority of these cells develop from skeletal muscle satellite cells, although there are some reports of other origins." ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "myogenic precursor cell", "xrefs" : [ "PMID:23303905" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008019", "lbl" : "mesenchymal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A non-polarised cell precursor cell that is part of some mesenchyme, is associated with the cell matrix but is not connected to other cells and is capable of migration." }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchyme cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008022", "lbl" : "endocardial cushion cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves.", "xrefs" : [ "PMID:18816864" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008025", "lbl" : "noradrenergic neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter.", "xrefs" : [ "GOC:dos" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008028", "lbl" : "visual system neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any neuron that is capable of part of some visual perception.", "xrefs" : [ "FBC:Autogenerated" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-07-09T19:12:36Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008031", "lbl" : "cortical interneuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "An interneuron that has its soma located in the cerebral cortex." }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cerebral cortex interneuron" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008034", "lbl" : "mural cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation.", "xrefs" : [ "Wiki:Mural_cell&oldid=930603194" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#added_for_HCA", "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-02-29T17:33:55Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0008035", "lbl" : "microcirculation associated smooth muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any vascular associated smooth muscle cell that is part of some microcirculatory vessel.", "xrefs" : [ "FBC:Autogenerated" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-7073-9172" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2020-02-29T17:37:00Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0009000", "lbl" : "sensory neuron of spinal nerve", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord.", "xrefs" : [ "GOC:nv", "GOC:pr" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "spinal sensory neuron" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0009001", "lbl" : "compound eye retinal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any cell in the compound eye, a light sensing organ composed of ommatidia." }, "xrefs" : [ { "val" : "GOC:pr" }, { "val" : "PMID:12021768" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0009004", "lbl" : "retinal cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.", "xrefs" : [ "GOC:pr" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim" ], "xrefs" : [ { "val" : "PMID:10702418" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0009097", "lbl" : "embryonic skeletal muscle fiber", "type" : "CLASS", "meta" : { "definition" : { "val" : "A skeletal muscle fiber found in an embryo. In mammalian embryos, skeletal muscle expresses myosin heavy chain-embryonic (MyHC-emb, encoded by the MYH3 gene), which regulates skeletal muscle development.", "xrefs" : [ "PMID:32094117", "PMID:7196501", "http://orcid.org/0000-0003-2034-601X" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-2825-0621" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2022-02-21T15:39:10Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010001", "lbl" : "stromal cell of bone marrow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A stromal cell that is part_of a bone marrow." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bone marrow stromal cell" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010004", "lbl" : "mononuclear cell of bone marrow", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mononuclear cell that is part_of a bone marrow." }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "bone marrow mononuclear cell" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-6601-2165" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010006", "lbl" : "cardiac blood vessel endothelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any blood vessel endothelial cell that is part of some heart.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010007", "lbl" : "His-Purkinje system cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any cell that is part of some His-Purkinje system.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010008", "lbl" : "cardiac endothelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any endothelial cell that is part of some heart.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0010008" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010009", "lbl" : "camera-type eye photoreceptor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any photoreceptor cell that is part of some camera-type eye.", "xrefs" : [ "FBC:Autogenerated" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "camera type eye photoreceptor cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010012", "lbl" : "cerebral cortex neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A CNS neuron of the cerebral cortex.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cortical neuron" }, { "pred" : "hasExactSynonym", "val" : "neuron of cerebral cortex" } ], "xrefs" : [ { "val" : "BTO:0004102" }, { "val" : "FMA:84104" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-7258-9596" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010017", "lbl" : "zygote", "type" : "CLASS", "meta" : { "definition" : { "val" : "A zygote in a plant or an animal." }, "xrefs" : [ { "val" : "MESH:D015053" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010020", "lbl" : "cardiac glial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any glial cell that is part of some heart.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010021", "lbl" : "cardiac myoblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any myoblast that develops into some cardiac muscle cell.", "xrefs" : [ "FBC:Autogenerated" ] }, "xrefs" : [ { "val" : "MESH:D032386" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0010022", "lbl" : "cardiac neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron that has its soma in the heart.", "xrefs" : [ "PMID:12486170", "PMID:29265764" ] }, "comments" : [ "This term is used in 3 GO terms that were created as part of the heart development focus project." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011001", "lbl" : "spinal cord motor neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement.", "xrefs" : [ "GOC:nv" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011007", "lbl" : "paraxial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell in the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites.", "xrefs" : [ "GOC:NV", "PMID:11687492" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "paraxial mesoderm cell" }, { "pred" : "hasExactSynonym", "val" : "somitic mesoderm cell" }, { "pred" : "hasNarrowSynonym", "val" : "presomitic mesoderm cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011012", "lbl" : "neural crest cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells.", "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-9900-7880" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0011012" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011019", "lbl" : "mesothelial cell of epicardium", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesothelial cell that is part of the epicardium." }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-5208-3432" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011021", "lbl" : "fibroblast of upper back skin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fibroblast that is part of upper back skin." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-5208-3432" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011022", "lbl" : "fibroblast of skin of back", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fibroblast that is part of skin of back." }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-5208-3432" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011026", "lbl" : "progenitor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses.", "xrefs" : [ "ISBN:978-1-62808-994-3", "https://doi.org/10.1016/B978-0-12-409503-8.00002-0" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-5208-3432" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011027", "lbl" : "skeletal muscle fibroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any fibroblast that is part of skeletal muscle tissue.", "xrefs" : [ "PMID:28369879", "https://orcid.org/0000-0001-6164-0667" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "skeleton muscle fibroblast" } ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0011027" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-5208-3432" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011030", "lbl" : "dermal microvascular endothelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any microvascular endothelial cell that is part of the dermis.", "xrefs" : [ "BTO:0004574", "CL:patterns/cellPartOfAnatomicalEntity" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "DMEC cell" }, { "pred" : "hasExactSynonym", "val" : "dermal microvascular endothelium cell" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0001-5208-3432" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0011115", "lbl" : "precursor cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cell that, by division or terminal differentiation, can give rise to other cell types.", "xrefs" : [ "GOC:dos" ] }, "comments" : [ "Work is needed on GO 'cell differentiation' before it is clear whether the equivalent class definition 'native cell' that capable_of some 'cell differentiation' works. Also, may want to consider merging this with non-terminally differentiated cell." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0012001", "lbl" : "neuron of the forebrain", "type" : "CLASS", "meta" : { "definition" : { "val" : "A CNS neuron of the forebrain." }, "subsets" : [ "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "forebrain neuron" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0002-3837-8864" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0017500", "lbl" : "neutrophillic cytoplasm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cytoplasm that exhibits a characteristic staining and color, pale-pink, with Wright-Giemsa stain.", "xrefs" : [ "GOC:add" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-05-25T01:36:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0017502", "lbl" : "acidophilic cytoplasm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain.", "xrefs" : [ "GOC:add" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "eosinophilic" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-22T04:23:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0017503", "lbl" : "basophilic cytoplasm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions.", "xrefs" : [ "GOC:tfm" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-22T04:24:54Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0017504", "lbl" : "polychromatophilic cytoplasm", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions.", "xrefs" : [ "GOC:tfm" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-28T04:25:23Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0017507", "lbl" : "reniform nucleus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave nucleus shape where the indentation is smaller than half of the distance to the farthest nuclear margin.", "xrefs" : [ "GOC:tfm" ] }, "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-1980-3228" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-12-23T02:31:25Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0017509", "lbl" : "alobate nucleus", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any nucleus that has characteristic some alobate.", "xrefs" : [ "FBC:Autogenerated" ] } } }, { "id" : "http://purl.obolibrary.org/obo/CL_0019001", "lbl" : "tracheobronchial serous cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any serous secreting cell that is part of the tracheobronchial epithelium." }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#added_for_HCA", "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "serous cell of tracheobronchial tree" } ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0019001" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-2034-601X" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2020-05-07T16:03:27Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0019002", "lbl" : "tracheobronchial chondrocyte", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any chondrocyte that is part of the tracheobronchial tree." }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#added_for_HCA", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chondrocyte of tracheobronchial tree" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-2034-601X" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2020-05-07T17:29:51Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0019018", "lbl" : "blood vessel smooth muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A smooth muscle cell that is part of any blood vessel.", "xrefs" : [ "PMID:9108778" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "smooth muscle cell of blood vessel" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-2034-601X" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2020-07-21T12:42:48Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_0019019", "lbl" : "tracheobronchial smooth muscle cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A smooth muscle cell that is part of the tracheobronchial tree.", "xrefs" : [ "PMID:10853867" ] }, "comments" : [ "The marker set ACTA2, TAGLN can identify the Human cell type tracheobronchial smooth muscle cell in the Lung with a confidence of 0.69 (NS-Forest FBeta value)." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "smooth muscle cell of tracheobronchial tree" } ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_0019019" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "https://orcid.org/0000-0003-2034-601X" }, { "pred" : "http://purl.org/dc/terms/date", "val" : "2020-07-21T12:50:22Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000042", "lbl" : "forebrain neuroblast", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any neuroblast (sensu Vertebrata) that is part of some forebrain.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000222", "lbl" : "stomach neuroendocrine cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A specialised neuroendocrine cell located in the gastric mucosa that regulates digestive processes including acid secretion and gut motility. This cell stores hormones in large dense core vesicles and synaptic-like microvesicles.", "xrefs" : [ "PMID:15153415" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "DES cell", "xrefs" : [ "PMID:15153415" ] }, { "pred" : "hasBroadSynonym", "val" : "diffuse endocrine system cell", "xrefs" : [ "PMID:15153415" ] } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000223", "lbl" : "pulmonary neuroendocrine cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuroendocrine cell that is part of respiratory epithelium of the lung and is involved in the sensory detection of environmental stimuli, including hypoxia, nicotine and air pressure. Ultrastructurally, this cell type is characterized by the presence of cytoplasmic dense core granules, which are considered the storage sites of amine and peptide hormones. Pulmonary neuroendocrine cells are innervated and appear as solitary cells or as clustered masses, localized at airway bifurcation sites, called neuroepithelial bodies that can release serotonin in response to hypoxia and interact with sensory nerve terminals. Pulmonary neuroendocrine cells also function as reserve stem cells that repair the surrounding epithelium after injury.", "xrefs" : [ "PMID:33355253", "doi:10.3109/01902148209069653", "doi:10.7554/eLife.78216" ] }, "comments" : [ "The marker set CHGA, GRP can identify the Human cell type lung neuroendocrine cell in the Lung with a confidence of 0.94 (NS-Forest FBeta value)." ], "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lung neuroendocrine cell", "xrefs" : [ "PMID:15018448" ] } ], "xrefs" : [ { "val" : "https://cellxgene.cziscience.com/cellguide/CL_1000223" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000271", "lbl" : "lung multiciliated epithelial cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "An epithelial cell that is part of the lung epithelium. This cell is characterised by the presence of cilia on its apical surface.", "xrefs" : [ "PMID:27864314" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "lung ciliated cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000272", "lbl" : "lung secretory cell", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any secretory cell that is part of some lung.", "xrefs" : [ "FBC:Autogenerated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000274", "lbl" : "trophectodermal cell", "type" : "CLASS", "meta" : { "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "trophectoderm cell" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000298", "lbl" : "mesothelial cell of dura mater", "type" : "CLASS", "meta" : { "definition" : { "val" : "A mesothelial cell that is part of the dura mater.", "xrefs" : [ "GOC:tfm" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "squamous mesothelial cell of dura mater", "xrefs" : [ "FMA:256516" ] } ], "xrefs" : [ { "val" : "FMA:256516" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000303", "lbl" : "fibroblast of areolar connective tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fibroblast that is part of the areolar connective tissue.", "xrefs" : [ "GOC:tfm" ] }, "xrefs" : [ { "val" : "FMA:261279" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000306", "lbl" : "fibroblast of tunica adventitia of artery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fibroblast that is part of the tunica adventitia of artery.", "xrefs" : [ "GOC:tfm" ] }, "xrefs" : [ { "val" : "FMA:261285" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000307", "lbl" : "fibroblast of dense regular elastic tissue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fibroblast 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"type" : "CLASS", "meta" : { "definition" : { "val" : "A serous secreting cell that is part of the epithelium of trachea.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "xrefs" : [ { "val" : "FMA:263078" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_1000330" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000331", "lbl" : "serous cell of epithelium of bronchus", "type" : "CLASS", "meta" : { "definition" : { "val" : "A serous secreting cell that is part of the epithelium of bronchus.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset", "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "xrefs" : [ { "val" : "FMA:263080" }, { "val" : "https://cellxgene.cziscience.com/cellguide/CL_1000331" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000361", "lbl" : "transitional myocyte of 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"hasExactSynonym", "val" : "AV node cardiac muscle cell", "xrefs" : [ "GOC:pr" ] }, { "pred" : "hasExactSynonym", "val" : "AV node cell", "xrefs" : [ "GOC:pr" ] }, { "pred" : "hasExactSynonym", "val" : "atrioventricular node cell", "xrefs" : [ "GOC:pr" ] }, { "pred" : "hasExactSynonym", "val" : "atrioventricular node myocyte", "xrefs" : [ "FMA:67106" ] } ], "xrefs" : [ { "val" : "FMA:67106" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000412", "lbl" : "endothelial cell of arteriole", "type" : "CLASS", "meta" : { "definition" : { "val" : "An endothelial cell that is part of the arteriole.", "xrefs" : [ "GOC:tfm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas" ], "xrefs" : [ { "val" : "FMA:67760" }, { "val" : "KUPO:0001097" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_1000413", "lbl" : "endothelial cell of artery", "type" : "CLASS", "meta" : { "definition" : { "val" : "A blood vessel endothelial cell that is part of an arterial 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}, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesenchymal stem cell of abdominal adipose" } ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "http://www.wikidata.org/entity/Q35563349" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-12-02T19:10:34Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_2000093", "lbl" : "bronchus fibroblast of lung", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any fibroblast of lung that is part of a bronchus.", "xrefs" : [ "GOC:TermGenie" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/cl#cellxgene_subset" ], "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/terms/contributor", "val" : "http://www.wikidata.org/entity/Q35563349" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2015-03-31T21:16:22Z" } ] } }, { "id" : "http://purl.obolibrary.org/obo/CL_3000004", "lbl" : "peripheral sensory neuron", "type" : "CLASS", "meta" : { "definition" : { "val" : "A neuron type that is located in a peripheral nervous system and it transmits sensory information from the peripheral (PNS) to the central nervous system (CNS). 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This cell contributes to vascular homeostasis, remodeling, and inflammation by producing extracellular matrix components, cytokines, and growth factors. 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Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. 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'GO:0000278 ; mitotic cell cycle represents the entire mitotic cell cycle, while 'GO:0140014 ; mitotic nuclear division' specifically represents the actual nuclear division step of the mitotic cell cycle." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_drosophila", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "mitosis" } ], "xrefs" : [ { "val" : "Wikipedia:Mitosis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0007067" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000280", "lbl" : "nuclear division", "type" : "CLASS", "meta" : { "definition" : { "val" : "The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei.", "xrefs" : [ "GOC:mah" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "karyokinesis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000313", "lbl" : "organellar ribosome", "type" : "CLASS", "meta" : { "definition" : { "val" : "A ribosome contained within a subcellular membrane-bounded organelle.", "xrefs" : [ "GOC:mah", "GOC:mcc" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "cellular_component" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000740", "lbl" : "nuclear membrane fusion", "type" : "CLASS", "meta" : { "definition" : { "val" : "The joining of 2 or more lipid bilayer membranes that surround the nucleus.", "xrefs" : [ "GOC:elh" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000741", "lbl" : "karyogamy", "type" : "CLASS", "meta" : { "definition" : { "val" : "The creation of a single nucleus from multiple nuclei as a result of fusing the lipid bilayers that surround each nuclei.", "xrefs" : [ "GOC:elh" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nuclear fusion" }, { "pred" : "hasExactSynonym", "val" : "nuclear fusion during karyogamy" } ], "xrefs" : [ { "val" : "Wikipedia:Karyogamy" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0007335" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000768", "lbl" : "syncytium formation by plasma membrane fusion", "type" : "CLASS", "meta" : { "definition" : { "val" : "The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane, by the fusion of the plasma membranes of two or more individual cells.", "xrefs" : [ "GOC:mtg_muscle", "GOC:tb" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "cell fusion" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000785", "lbl" : "chromatin", "type" : "CLASS", "meta" : { "definition" : { "val" : "The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.", "xrefs" : [ "GOC:elh", "PMID:20404130" ] }, "comments" : [ "Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "cytoplasmic chromatin" }, { "pred" : "hasNarrowSynonym", "val" : "nuclear chromatin" }, { "pred" : "hasRelatedSynonym", "val" : "chromosome scaffold" } ], "xrefs" : [ { "val" : "NIF_Subcellular:sao1615953555" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0000789" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0000790" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0005717" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "cellular_component" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000792", "lbl" : "heterochromatin", "type" : "CLASS", "meta" : { "definition" : { "val" : "A compact and highly condensed form of chromatin that is refractory to transcription.", "xrefs" : [ "PMID:32017156" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "transcriptionally inactive chromatin" }, { "pred" : "hasExactSynonym", "val" : "transcriptionally silent chromatin" }, { "pred" : "hasNarrowSynonym", "val" : "nuclear heterochromatin" } ], "xrefs" : [ { "val" : "NIF_Subcellular:sao581845896" }, { "val" : "Wikipedia:Heterochromatin" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0005720" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0035328" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "cellular_component" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000819", "lbl" : "sister chromatid segregation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The cell cycle process in which sister chromatids are organized and then physically separated and apportioned to two or more sets.", "xrefs" : [ "GOC:ai", "GOC:elh" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0000902", "lbl" : "cell morphogenesis", "type" : "CLASS", "meta" : { "definition" : { "val" : "The developmental process in which the size or shape of a cell is generated and organized.", "xrefs" : [ "GOC:clt", "GOC:dph", "GOC:go_curators", "GOC:tb" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_drosophila", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cellular morphogenesis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0007148" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0045790" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0045791" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001101", "lbl" : "response to acid chemical", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). 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This class covers both action potentials that propagate and those that fail to do so." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001525", "lbl" : "angiogenesis", "type" : "CLASS", "meta" : { "definition" : { "val" : "Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.", "xrefs" : [ "ISBN:0878932453" ] }, "xrefs" : [ { "val" : "Wikipedia:Angiogenesis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001539", "lbl" : "cilium or flagellum-dependent cell motility", "type" : "CLASS", "meta" : { "definition" : { "val" : "Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella.", "xrefs" : [ "GOC:cilia", "GOC:hjd", "GOC:krc" ] }, "comments" : [ "Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. 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Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization.", "xrefs" : [ "GOC:devbiol", "https://www.ncbi.nlm.nih.gov/books/NBK279054/" ] }, "xrefs" : [ { "val" : "Wikipedia:Oocyte_maturation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001558", "lbl" : "regulation of cell growth", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process that modulates the frequency, rate, extent or direction of cell growth.", "xrefs" : [ "GOC:go_curators" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001560", "lbl" : "regulation of cell growth by extracellular stimulus", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process in which external signals modulate the frequency, rate or extent of cell growth, the irreversible increase in size of a cell over time.", "xrefs" : [ "GOC:dph" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "interpretation of external signals that regulate cell growth" }, { "pred" : "hasExactSynonym", "val" : "regulation of cell growth by detection of exogenous stimulus" }, { "pred" : "hasExactSynonym", "val" : "regulation of cell growth by sensing of exogenous stimulus" }, { "pred" : "hasExactSynonym", "val" : "regulation of growth by exogenous signal" }, { "pred" : "hasExactSynonym", "val" : "regulation of growth by exogenous stimuli" }, { "pred" : "hasExactSynonym", "val" : "regulation of growth by exogenous stimulus" }, { "pred" : "hasExactSynonym", "val" : "regulation of growth by external signal" }, { "pred" : "hasExactSynonym", "val" : "regulation of growth by external stimuli" }, { "pred" : "hasExactSynonym", "val" : "regulation of growth by external stimulus" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001568", "lbl" : "blood vessel development", "type" : "CLASS", "meta" : { "definition" : { "val" : "The process whose specific outcome is the progression of a blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood.", "xrefs" : [ "GOC:hjd", "UBERON:0001981" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001569", "lbl" : "branching involved in blood vessel morphogenesis", "type" : "CLASS", "meta" : { "definition" : { "val" : "The process of coordinated growth and sprouting of blood vessels giving rise to the organized vascular system.", "xrefs" : [ "GOC:dph" ] }, "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "patterning of blood vessels", "xrefs" : [ "GOC:dph" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001570", "lbl" : "vasculogenesis", "type" : "CLASS", "meta" : { "definition" : { "val" : "The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes.", "xrefs" : [ "PMID:8999798" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "vascular morphogenesis" } ], "xrefs" : [ { "val" : "Wikipedia:Vasculogenesis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001578", "lbl" : "microtubule bundle formation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process that results in a parallel arrangement of microtubules.", "xrefs" : [ "GOC:dph" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "microtubule bundling" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001654", "lbl" : "eye development", "type" : "CLASS", "meta" : { "definition" : { "val" : "The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight.", "xrefs" : [ "GOC:jid", "GOC:jl" ] }, "xrefs" : [ { "val" : "Wikipedia:Eye_development" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0042460" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001659", "lbl" : "temperature homeostasis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A homeostatic process in which an organism modulates its internal body temperature.", "xrefs" : [ "GOC:jl" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "thermoregulation", "xrefs" : [ "GOC:dph", "GOC:tb" ] } ], "xrefs" : [ { "val" : "Wikipedia:Thermoregulation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001666", "lbl" : "response to hypoxia", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. 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An example of this process is found in Mus musculus.", "xrefs" : [ "GOC:go_curators", "GOC:mtg_sensu" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001704", "lbl" : "formation of primary germ layer", "type" : "CLASS", "meta" : { "definition" : { "val" : "The formation of the ectoderm, mesoderm and endoderm during gastrulation.", "xrefs" : [ "GOC:go_curators" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001705", "lbl" : "ectoderm formation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The formation of ectoderm during gastrulation.", "xrefs" : [ "GOC:go_curators" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001706", "lbl" : "endoderm formation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The formation of the endoderm during gastrulation.", "xrefs" : [ "GOC:go_curators" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "endoblast formation", "xrefs" : [ "GOC:dph", "GOC:sdb_2009", "GOC:tb" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0001707", "lbl" : "mesoderm formation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The process that gives rise to the mesoderm. 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The adult compound eye is a precise assembly of 700-800 ommatidia. Each ommatidium is composed of 20 cells, identified by cell type and position. 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A branch is a division or offshoot from a main stem. 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It covers the time from fertilization of a female ovum by a male spermatozoon until birth.", "xrefs" : [ "ISBN:0192800825" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "gestation" }, { "pred" : "hasRelatedSynonym", "val" : "carrying of young" } ], "xrefs" : [ { "val" : "Wikipedia:Gestation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007566", "lbl" : "embryo implantation", "type" : "CLASS", "meta" : { "definition" : { "val" : "Attachment of the blastocyst to the uterine lining.", "xrefs" : [ "GOC:isa_complete", "PMID:10882512" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "blastocyst implantation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007585", "lbl" : "respiratory gaseous exchange by respiratory system", "type" : "CLASS", "meta" : { "definition" : { "val" : "The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms.", "xrefs" : [ "ISBN:0198506732" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "breathing" }, { "pred" : "hasBroadSynonym", "val" : "respiration" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007586", "lbl" : "digestion", "type" : "CLASS", "meta" : { "definition" : { "val" : "The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.", "xrefs" : [ "GOC:isa_complete", "ISBN:0198506732" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "xrefs" : [ { "val" : "Wikipedia:Digestion" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007600", "lbl" : "sensory perception", "type" : "CLASS", "meta" : { "definition" : { "val" : "The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.", "xrefs" : [ "GOC:ai", "GOC:dph" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_drosophila" ], "xrefs" : [ { "val" : "Wikipedia:Perception" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007601", "lbl" : "visual perception", "type" : "CLASS", "meta" : { "definition" : { "val" : "The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.", "xrefs" : [ "GOC:ai" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "sense of sight" }, { "pred" : "hasExactSynonym", "val" : "sensory visual perception" }, { "pred" : "hasExactSynonym", "val" : "vision" } ], "xrefs" : [ { "val" : "Wikipedia:Visual_perception" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007605", "lbl" : "sensory perception of sound", "type" : "CLASS", "meta" : { "definition" : { "val" : "The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.", "xrefs" : [ "GOC:ai" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hearing" }, { "pred" : "hasExactSynonym", "val" : "perception of sound" } ], "xrefs" : [ { "val" : "Wikipedia:Hearing_(sense)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007606", "lbl" : "sensory perception of chemical stimulus", "type" : "CLASS", "meta" : { "definition" : { "val" : "The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.", "xrefs" : [ "GOC:ai" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "chemosensory perception" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007610", "lbl" : "behavior", "type" : "CLASS", "meta" : { "definition" : { "val" : "The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.", "xrefs" : [ "GOC:ems", "GOC:jl", "ISBN:0395448956", "PMID:20160973" ] }, "comments" : [ "1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.\n2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis)." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "behavioral response to stimulus" }, { "pred" : "hasExactSynonym", "val" : "behaviour" }, { "pred" : "hasExactSynonym", "val" : "behavioural response to stimulus" }, { "pred" : "hasRelatedSynonym", "val" : "single-organism behavior" } ], "xrefs" : [ { "val" : "Wikipedia:Behavior" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "jl" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-09-20T14:06:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0023032" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0044708" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0044709" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007611", "lbl" : "learning or memory", "type" : "CLASS", "meta" : { "definition" : { "val" : "The acquisition and processing of information and/or the storage and retrieval of this information over time.", "xrefs" : [ "GOC:jid", "PMID:8938125" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0007613", "lbl" : "memory", "type" : "CLASS", "meta" : { "definition" : { "val" : "The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).", "xrefs" : [ "GOC:curators", "ISBN:0582227089" ] }, "xrefs" : [ { "val" : "Wikipedia:Memory" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008015", "lbl" : "blood circulation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products.", "xrefs" : [ "GOC:mtg_heart", "ISBN:0192800825" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "hemolymph circulation" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0070261" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008016", "lbl" : "regulation of heart contraction", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process in which the heart decreases in volume in a characteristic way to propel blood through the body.", "xrefs" : [ "GOC:dph", "GOC:go_curators", "GOC:tb" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "regulation of cardiac contraction" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008078", "lbl" : "mesodermal cell migration", "type" : "CLASS", "meta" : { "definition" : { "val" : "The orderly movement of mesodermal cells from one site to another.", "xrefs" : [ "GOC:ascb_2009", "GOC:dph", "GOC:mah", "GOC:sat", "GOC:tb", "PMID:25119047" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "mesoderm cell migration" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008088", "lbl" : "axo-dendritic transport", "type" : "CLASS", "meta" : { "definition" : { "val" : "The directed movement of organelles or molecules along microtubules in neuron projections.", "xrefs" : [ "ISBN:0815316194" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_synapse" ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "axon cargo transport" }, { "pred" : "hasNarrowSynonym", "val" : "axonal transport" }, { "pred" : "hasNarrowSynonym", "val" : "axoplasmic transport" } ], "xrefs" : [ { "val" : "Wikipedia:Axoplasmic_transport" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008089", "lbl" : "anterograde axonal transport", "type" : "CLASS", "meta" : { "definition" : { "val" : "The directed movement of organelles or molecules along microtubules from the cell body toward the cell periphery in nerve cell axons.", "xrefs" : [ "ISBN:0815316194" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_synapse" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "anterograde axon cargo transport" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008090", "lbl" : "retrograde axonal transport", "type" : "CLASS", "meta" : { "definition" : { "val" : "The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons.", "xrefs" : [ "ISBN:0815316194" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_synapse" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "retrograde axon cargo transport" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008104", "lbl" : "protein localization", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process in which a protein is transported to, or maintained in, a specific location.", "xrefs" : [ "GOC:ai" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_drosophila" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cellular protein localisation", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "cellular protein localization" }, { "pred" : "hasExactSynonym", "val" : "protein localisation", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasNarrowSynonym", "val" : "channel localizer activity", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasRelatedSynonym", "val" : "asymmetric protein localisation", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasRelatedSynonym", "val" : "asymmetric protein localization" }, { "pred" : "hasRelatedSynonym", "val" : "establishment and maintenance of asymmetric protein localization" }, { "pred" : "hasRelatedSynonym", "val" : "establishment and maintenance of protein localization" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0008105" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0016249" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0034613" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008150", "lbl" : "biological_process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.", "xrefs" : [ "GOC:pdt" ] }, "comments" : [ "Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "biological process" }, { "pred" : "hasExactSynonym", "val" : "physiological process" }, { "pred" : "hasRelatedSynonym", "val" : "single organism process" }, { "pred" : "hasRelatedSynonym", "val" : "single-organism process" } ], "xrefs" : [ { "val" : "Wikipedia:Biological_process" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "jl" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-09-19T15:05:24Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0000004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0007582" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0044699" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008152", "lbl" : "metabolic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cellular process consisting of the biochemical pathways by which a living organism transforms chemical substances. This includes including anabolism (biosynthetic process) and catabolism (catabolic process). Metabolic processes includes the transformation of small molecules, as well macromolecular processes such as DNA repair and replication, protein synthesis and degradation.", "xrefs" : [ "GOC:go_curators", "ISBN:0198547684" ] }, "comments" : [ "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_euk_cellular_processes_ribbon", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_prokaryote_ribbon" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "metabolism" } ], "xrefs" : [ { "val" : "Wikipedia:Metabolism" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "jl" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-10-17T15:46:40Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0044236" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0044710" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008202", "lbl" : "steroid metabolic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.", "xrefs" : [ "ISBN:0198547684" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "steroid metabolism" } ], "xrefs" : [ { "val" : "Wikipedia:Steroid_metabolism" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008219", "lbl" : "cell death", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).", "xrefs" : [ "GOC:mah", "GOC:mtg_apoptosis", "PMID:25236395" ] }, "comments" : [ "This term should not be used for direct annotation, it is currently kept in GO as a placeholder for describing cell death phenotypes in uPHENO. When information is provided on a programmed cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Unintentional cell death, i.e. cell death caused by injury, ageing, or cell phenotypes observed as a result of a pathological mutation in an essential gene should NOT be annotated using GO terms." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "accidental cell death" }, { "pred" : "hasRelatedSynonym", "val" : "necrosis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0008283", "lbl" : "cell population proliferation", "type" : "CLASS", "meta" : { "definition" : { "val" : "The multiplication or reproduction of cells, resulting in the expansion of a cell population.", "xrefs" : [ "GOC:mah", "GOC:mb" ] }, "comments" : [ "This term was moved out from being a child of 'cellular process' because it is a cell population-level process, and cellular processes are restricted to those processes that involve individual cells. 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Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "biopolymer biosynthetic process", "xrefs" : [ "GOC:mtg_chebi_dec09" ] }, { "pred" : "hasExactSynonym", "val" : "macromolecule anabolism" }, { "pred" : "hasExactSynonym", "val" : "macromolecule biosynthesis" }, { "pred" : "hasExactSynonym", "val" : "macromolecule formation" }, { "pred" : "hasExactSynonym", "val" : "macromolecule synthesis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0043284" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0009100", "lbl" : "glycoprotein metabolic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "The chemical reactions and pathways involving glycoproteins, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.", "xrefs" : [ "GOC:go_curators", "ISBN:0198506732" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_drosophila" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glycoprotein metabolism" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0009101", "lbl" : "glycoprotein biosynthetic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "The chemical reactions and pathways resulting in the formation of glycoproteins, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.", "xrefs" : [ "GOC:go_curators", "ISBN:0198506732" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "glycoprotein anabolism" }, { "pred" : "hasExactSynonym", "val" : "glycoprotein biosynthesis" }, { "pred" : "hasExactSynonym", "val" : "glycoprotein formation" }, { "pred" : "hasExactSynonym", "val" : "glycoprotein synthesis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0009112", "lbl" : "nucleobase metabolic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "The chemical reactions and pathways involving a nucleobase, a nitrogenous base that is a constituent of a nucleic acid, e.g. the purines: adenine, guanine, hypoxanthine, xanthine and the pyrimidines: cytosine, uracil, thymine.", "xrefs" : [ "GOC:ma" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nucleobase metabolism" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0009306", "lbl" : "protein secretion", "type" : "CLASS", "meta" : { "definition" : { "val" : "The controlled release of proteins from a cell.", "xrefs" : [ "GOC:ai" ] }, "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "glycoprotein secretion" }, { "pred" : "hasNarrowSynonym", "val" : "protein secretion during cell fate commitment" }, { "pred" : "hasNarrowSynonym", "val" : "protein secretion resulting in cell fate commitment" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0045166" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0045731" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0009308", "lbl" : "amine metabolic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. 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Instead, select a child term or, if no appropriate child term exists, please request a new term. 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Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.", "xrefs" : [ "GOC:mah" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "up regulation of mononuclear cell migration", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "up-regulation of mononuclear cell migration", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "upregulation of mononuclear cell migration", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasNarrowSynonym", "val" : "activation of mononuclear cell migration", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasNarrowSynonym", "val" : "stimulation of mononuclear cell migration", "xrefs" : [ "GOC:mah" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-02-16T02:15:29Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071692", "lbl" : "protein localization to extracellular region", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process in which a protein is transported from one specific location in the extracellular region to another, or maintained in a specific extracellular location.", "xrefs" : [ "GOC:mah" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "protein localisation in extracellular region", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "protein localization in extracellular region" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-02-25T04:00:13Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071695", "lbl" : "anatomical structure maturation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure to attain its fully functional state.", "xrefs" : [ "GOC:mah" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-02T11:43:38Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071696", "lbl" : "ectodermal placode development", "type" : "CLASS", "meta" : { "definition" : { "val" : "The progression of an ectodermal placode over time from its initial formation until its mature state. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.", "xrefs" : [ "GOC:mah" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-02T11:48:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071697", "lbl" : "ectodermal placode morphogenesis", "type" : "CLASS", "meta" : { "definition" : { "val" : "The process in which the anatomical structures of an ectodermal placode are generated and organized. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.", "xrefs" : [ "GOC:mah" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-02T11:49:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071705", "lbl" : "nitrogen compound transport", "type" : "CLASS", "meta" : { "definition" : { "val" : "The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.", "xrefs" : [ "GOC:mah" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_obsoletion_candidate" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-08T03:56:28Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071709", "lbl" : "membrane assembly", "type" : "CLASS", "meta" : { "definition" : { "val" : "The aggregation, arrangement and bonding together of a set of components to form a membrane.", "xrefs" : [ "GOC:mah" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T11:19:17Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071711", "lbl" : "basement membrane organization", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the basement membrane.", "xrefs" : [ "GOC:mah" ] }, "comments" : [ "Note that this term has no relationship to 'membrane organization ; GO:0061024' because the basement membrane is not a lipid bilayer." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "basement membrane organisation", "xrefs" : [ "GOC:mah" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T11:57:10Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071763", "lbl" : "nuclear membrane organization", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear inner or outer membrane.", "xrefs" : [ "GOC:mah" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nuclear membrane organisation", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasRelatedSynonym", "val" : "nuclear membrane organization and biogenesis", "xrefs" : [ "GOC:mah" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-29T03:59:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071764", "lbl" : "nuclear outer membrane organization", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear outer membrane.", "xrefs" : [ "GOC:mah" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "nuclear outer membrane organisation", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasRelatedSynonym", "val" : "nuclear outer membrane organization and biogenesis", "xrefs" : [ "GOC:mah" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-29T04:03:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071806", "lbl" : "protein transmembrane transport", "type" : "CLASS", "meta" : { "definition" : { "val" : "The process in which a protein is transported across a membrane.", "xrefs" : [ "GOC:mah", "GOC:vw" ] }, "comments" : [ "Note that this term is not intended for use in annotating lateral movement within membranes." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "protein membrane transport" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-03T02:54:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071826", "lbl" : "protein-RNA complex organization", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a ribonucleoprotein complex.", "xrefs" : [ "GOC:mah" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "RNA-protein complex subunit organization", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "protein-RNA complex subunit organization", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "ribonucleoprotein complex subunit organisation", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "ribonucleoprotein complex subunit organization" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-08T10:10:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071840", "lbl" : "cellular component organization or biogenesis", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.", "xrefs" : [ "GOC:mah" ] }, "comments" : [ "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." ], "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cellular component organisation or biogenesis", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "cellular component organisation or biogenesis at cellular level", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "cellular component organization or biogenesis at cellular level" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-10T01:39:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "GO:0071841" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071867", "lbl" : "response to monoamine", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monoamine stimulus. A monoamine is any of a group of molecular messengers that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan.", "xrefs" : [ "GOC:mah" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "response to monoamine stimulus", "xrefs" : [ "GOC:dos" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-13T02:36:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071869", "lbl" : "response to catecholamine", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a catecholamine stimulus. A catecholamine is any of a group of biogenic amines that includes 4-(2-aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution.", "xrefs" : [ "GOC:BHF", "GOC:mah" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "response to catecholamine stimulus", "xrefs" : [ "GOC:dos" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-13T02:51:13Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071873", "lbl" : "response to norepinephrine", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a norepinephrine stimulus. Norepinephrine is a catecholamine that has the formula C8H11NO3; it acts as a hormone, and as a neurotransmitter in most of the sympathetic nervous system.", "xrefs" : [ "GOC:BHF", "GOC:mah" ] }, "comments" : [ "Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors." ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "response to noradrenaline stimulus", "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "response to norepinephrine stimulus", "xrefs" : [ "GOC:dos" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-13T03:31:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071887", "lbl" : "leukocyte apoptotic process", "type" : "CLASS", "meta" : { "definition" : { "val" : "Any apoptotic process in a leukocyte, an achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.", "xrefs" : [ "CL:0000738", "GOC:BHF", "GOC:mah", "GOC:mtg_apoptosis" ] }, "comments" : [ "Note that a lymphocyte is a cell of the B cell, T cell, or natural killer cell lineage (CL:0000542)." ], "synonyms" : [ { "pred" : "hasNarrowSynonym", "val" : "leukocyte apoptosis" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-09-14T12:44:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071944", "lbl" : "cell periphery", "type" : "CLASS", "meta" : { "definition" : { "val" : "The broad region around and including the plasma membrane of a cell, encompassing the cell cortex (inside the cell), the plasma membrane, and any external encapsulating structures.", "xrefs" : [ "GOC:pdt" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-04T01:51:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "cellular_component" } ] } }, { "id" : "http://purl.obolibrary.org/obo/GO_0071953", "lbl" : "elastic fiber", "type" : "CLASS", "meta" : { "definition" : { "val" : "An supramolecular fiber that consists of an insoluble core of polymerized tropoelastin monomers and a surrounding mantle of microfibrils. 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ncbi_taxonomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9989", "lbl" : "Rodentia", "type" : "CLASS", "meta" : { "xrefs" : [ { "val" : "GC_ID:1" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "ncbi_taxonomy" } ] } }, { "id" : "http://purl.obolibrary.org/obo/OBI_0100026", "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000000", "lbl" : "obsolete pato", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "lbl" : "quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000072" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000002", "lbl" : "obsolete value", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000003", "lbl" : "obsolete assay", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000004", "lbl" : "mobility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "Should be defined using translocation." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000005", "lbl" : "obsolete absolute activity", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000006", "lbl" : "obsolete process", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000007", "lbl" : "obsolete relative activity", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000008", "lbl" : "speed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Velocity" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "velocity" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000009", "lbl" : "obsolete absolute speed", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000010", "lbl" : "obsolete relative speed", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000011", "lbl" : "age", "type" : "CLASS", "meta" : { "definition" : { "val" : "A time quality inhering in a bearer by virtue of how long the bearer has existed.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000012", "lbl" : "obsolete absolute age", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000013", "lbl" : "obsolete relative age", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000014", "lbl" : "color", "type" : "CLASS", "meta" : { "definition" : { "val" : "A composite chromatic quality composed of hue, saturation and intensity parts.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "colour" }, { "pred" : "hasExactSynonym", "val" : "relative color" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000020" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000015", "lbl" : "color hue", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra.", "xrefs" : [ "PATOC:cjm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000016", "lbl" : "color brightness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scalar optical property that is the intensity, value or amount of perceived light.", "xrefs" : [ "PATOC:MAH" ] }, "comments" : [ "Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "color intensity" }, { "pred" : "hasExactSynonym", "val" : "color lightness" }, { "pred" : "hasExactSynonym", "val" : "color value" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000017", "lbl" : "color saturation", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scalar chromatic property that is the degree of purity of perceived light.", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000018", "lbl" : "fluorescence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000019", "lbl" : "color pattern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A chromatic property that is the relative position of different hues or degrees of saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000020", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0000014" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000021", "lbl" : "compatibility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence.", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000022", "lbl" : "obsolete gametophytic compatability", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000023", "lbl" : "obsolete relative compatability", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000024", "lbl" : "obsolete sporophytic compatability", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000025", "lbl" : "composition", "type" : "CLASS", "meta" : { "definition" : { "val" : "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood)." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "composed of" }, { "pred" : "hasExactSynonym", "val" : "compositionality" }, { "pred" : "hasExactSynonym", "val" : "content" }, { "pred" : "hasExactSynonym", "val" : "structure, composition" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0002015" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000026", "lbl" : "obsolete carbohydrate composition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000027", "lbl" : "obsolete electrolyte composition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000028", "lbl" : "obsolete macromolecular composition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000029", "lbl" : "obsolete protein composition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000030", "lbl" : "obsolete enzyme composition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000031", "lbl" : "obsolete metabolite composition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000032", "lbl" : "obsolete secondary product composition", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000033", "lbl" : "concentration of", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/concentration" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "concentration" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000034", "lbl" : "obsolete protein concentration", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000035", "lbl" : "obsolete carbohydrate concentration", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000036", "lbl" : "obsolete water content", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000037", "lbl" : "consistency", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "firmness" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000038", "lbl" : "obsolete gel consistency", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000039", "lbl" : "direction", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's orientation in space.", "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, "comments" : [ "TODO: consider merging with angular placement." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000040", "lbl" : "distance", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality that is the extent of space between two entities.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000041", "lbl" : "obsolete absolutedistance", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000042", "lbl" : "obsolete relative distance", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000043", "lbl" : "flavor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000044", "lbl" : "frequency", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/frequency" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000045", "lbl" : "obsolete absolute frequency", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000046", "lbl" : "obsolete relative frequency", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000047", "lbl" : "biological sex", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.", "xrefs" : [ "MGED:MGED" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000048", "lbl" : "hardness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced", "xrefs" : [ "merriam-webster:merriam-webster" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "impenetrability" }, { "pred" : "hasRelatedSynonym", "val" : "toughness" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000049", "lbl" : "intensity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000050", "lbl" : "life span", "type" : "CLASS", "meta" : { "definition" : { "val" : "A time quality inhering in a bearer by virtue of the bearer's expected maximum age.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000051", "lbl" : "morphology", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000052", "lbl" : "shape", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "relational shape quality" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001647" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000053", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0000070" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000054", "lbl" : "obsolete absolute number", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000055", "lbl" : "obsolete relative number", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000056", "lbl" : "trophic quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Trophic_level" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "nutritional quality" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000057", "lbl" : "occurrence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "temporal" }, { "pred" : "hasExactSynonym", "val" : "incidence" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000156" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000158" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000058", "lbl" : "odor", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000059", "lbl" : "obsolete parental quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "parental type" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000060", "lbl" : "spatial pattern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "distribution" }, { "pred" : "hasRelatedSynonym", "val" : "pattern" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000132" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001565" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000061", "lbl" : "obsolete relative pattern", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000062", "lbl" : "sleep pattern", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000063", "lbl" : "obsolete percentage", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000064", "lbl" : "obsolete absolute percentage", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000065", "lbl" : "obsolete relative percentage", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000066", "lbl" : "pilosity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000067", "lbl" : "obsolete relative pilosity", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000068", "lbl" : "qualitative", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of an entity that is descriptive or observational, typically not represented numerically.", "xrefs" : [ "https://libguides.macalester.edu/c.php?g=527786&p=3608639", "https://www.ncbi.nlm.nih.gov/books/NBK470395/" ] }, "comments" : [ "TODO: define this or obsolete it and move children somewhere else." ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000069", "lbl" : "deviation (from_normal)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000070", "lbl" : "amount", "type" : "CLASS", "meta" : { "definition" : { "val" : "The number of entities of this type that are part of the whole organism.", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "This term was originally named \"presence\". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "presence or absence in organism" }, { "pred" : "hasExactSynonym", "val" : "quantitative" }, { "pred" : "hasRelatedSynonym", "val" : "count in organism" }, { "pred" : "hasRelatedSynonym", "val" : "number" }, { "pred" : "hasRelatedSynonym", "val" : "presence" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000053" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000071" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001169" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001226" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000071", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0000070" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000072", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0000001" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000073", "lbl" : "obsolete relative_quality", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000074", "lbl" : "obsolete shattering", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000075", "lbl" : "obsolete threshability", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000076", "lbl" : "obsolete regulation", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000077", "lbl" : "response to", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "reactivity", "xrefs" : [ "GOC:CJM" ] }, { "pred" : "hasRelatedSynonym", "val" : "response" }, { "pred" : "hasRelatedSynonym", "val" : "responsivity" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000078", "lbl" : "rhythm quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions.", "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000079", "lbl" : "obsolete absolute rhythym", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000080", "lbl" : "amplitude", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000081", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0001309" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000082", "lbl" : "persistence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", "xrefs" : [ "reference.com:reference.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : 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This is a legacy term and will ultimately be obsoleted.\nSee https://github.com/pato-ontology/pato/issues/331." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#absent_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "absence" }, { "pred" : "hasExactSynonym", "val" : "absent from organism" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001996" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000463", "lbl" : "conspicuous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of being clearly visible.", "xrefs" : [ 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"lbl" : "albedo", "type" : "CLASS", "meta" : { "definition" : { "val" : "A reflective quality restricted to a particular wavelength.", "xrefs" : [ "PATOC:cjm" ] }, "comments" : [ "Typically used for light, but also applied to full EM spectrum." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001296", "lbl" : "luminous flux", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001297", "lbl" : "reflectivity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001298", "lbl" : "phosphorescence", "type" : "CLASS", "meta" : { "definition" : { "val" : "A fluorescence in which the emittence continues after the absorption has ceased.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001299", "lbl" : "radiation emitting quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001300", "lbl" : "optical quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001301", "lbl" : "chromatic property", "type" : "CLASS", "meta" : { "definition" : { "val" : "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer.", "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001302", "lbl" : "vermilion", "type" : "CLASS", "meta" : { "definition" : { "val" : "A color consisting of red and orange hue with a slight amount of gray.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001303", "lbl" : "variability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing.", "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "variability of a physical quality" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001304", "lbl" : "variability of temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change.", "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001305", "lbl" : "increased temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high temperature" }, { "pred" : "hasExactSynonym", "val" : "hot" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000678" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001306", "lbl" : "decreased temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "cold" }, { "pred" : "hasExactSynonym", "val" : "low temperature" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000677" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001307", "lbl" : "decreased variability of temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability of temperature which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low variability of temperature" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001308" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001308", "lbl" : "increased variability of temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability of temperature which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high variability of temperature" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001307" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001309", "lbl" : "duration", "type" : "CLASS", "meta" : { "definition" : { "val" : "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.", "xrefs" : [ "PATOC:mellybelly" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "period" }, { "pred" : "hasRelatedSynonym", "val" : "time" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000081" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001310", "lbl" : "duration of temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy.", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "TODO: obsolete? I don't know what this means." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001311", "lbl" : "decreased duration of temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001312" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001312", "lbl" : "increased duration of temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high duration of temperature" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001311" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001313", "lbl" : "invariant temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature.", "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001314" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001314", "lbl" : "variant temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature.", "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001313" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001315", "lbl" : "mild increased temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature which is increased by a low degree.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001316", "lbl" : "moderate increased temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature which is increased by a medium degree.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001317", "lbl" : "severe increased temperature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A temperature which is increased by a high degree.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001318", "lbl" : "indiscriminate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001319" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001319", "lbl" : "discriminate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001318" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001320", "lbl" : "pubescent hair", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pilosity quality of being covered with short hairs or soft down.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001321", "lbl" : "right angle to", "type" : "CLASS", "meta" : { "definition" : { "val" : "An angle which is 90 degrees to another entity.", "xrefs" : [ "thesaurus.math:thesaurus.math" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001322", "lbl" : "straight angle to", "type" : "CLASS", "meta" : { "definition" : { "val" : "An angle which is 180 degrees to another entity.", "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, "comments" : [ "TODO: decide on correct parentage." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001323", "lbl" : "area", "type" : "CLASS", "meta" : { "definition" : { "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001324", "lbl" : "bilateral symmetry", "type" : "CLASS", "meta" : { "definition" : { "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "left-right symmetry" }, { "pred" : "hasRelatedSynonym", "val" : "pennate", "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001325", "lbl" : "radial symmetry", "type" : "CLASS", "meta" : { "definition" : { "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "centric", "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001326", "lbl" : "obsolete left-right symmetry", "type" : "CLASS", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001327", "lbl" : "zygomorphic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001328", "lbl" : "actinomorphic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001329", "lbl" : "flavourful", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having flavour.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001330", "lbl" : "flavourless", "type" : "CLASS", "meta" : { "definition" : { "val" : "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001331", "lbl" : "odorous", "type" : "CLASS", "meta" : { "definition" : { "val" : "An odor quality inhering in a bearer by virtue of the bearer's having odour.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001332", "lbl" : "amorphous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001333", "lbl" : "temporally extended", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a process which ends later than the natural end time.", "xrefs" : [ "PATOC:melissa" ] }, 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"MGED:MGED" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001340", "lbl" : "hermaphrodite", "type" : "CLASS", "meta" : { "definition" : { "val" : "A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual.", "xrefs" : [ "MGED:MGED" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "hermaphroditic" }, { "pred" : "hasExactSynonym", "val" : "intersex" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001341", "lbl" : "a mating type (yeast)", "type" : "CLASS", "meta" : { 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"http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001403", "lbl" : "pluripotent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Pluripotent" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001404", "lbl" : "nucleate quality", "type" : "CLASS", "meta" : 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"meta" : { "definition" : { "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei.", "xrefs" : [ "Biology-online:Biology-online" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001407", "lbl" : "mononucleate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus.", "xrefs" : [ "Biology-online:Biology-online" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001408", "lbl" : "ciliated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cellular quality inhering in a bearer by virtue of the bearer's having one or more cilia as a part.", "xrefs" : [ "PMID:36924208", "wikipedia:Cilium" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001409", "lbl" : "spindle-shaped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod.", "xrefs" : [ "Biology-online:Biology-online" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001410", "lbl" : "striated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel.", "xrefs" : [ "Biology-online:Biology-online" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001411", "lbl" : "structured", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a 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"http://purl.obolibrary.org/obo/PATO_0001413", "lbl" : "angular velocity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_velocity" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001414", "lbl" : "catalytic activity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], 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"CLASS", "meta" : { "definition" : { "val" : "A color consisting of purple and brown hue.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Maroon" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001427", "lbl" : "compound acidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor.", "xrefs" : [ "chemicool:chemicool" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001428", "lbl" : "medium acidity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base.", "xrefs" : [ "chemicool:chemicool" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001429", "lbl" : "acidic", "type" : "CLASS", "meta" : { "definition" : { "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions.", "xrefs" : [ "chemicool:chemicool" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001430", "lbl" : "alkaline", "type" : "CLASS", "meta" : { "definition" : { "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.", "xrefs" : [ "chemicool:chemicool" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001431", "lbl" : "adhesivity", "type" : "CLASS", "meta" : { "definition" : { "val" : "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact.", "xrefs" : [ "PATOC:GVG" ] }, "comments" : [ "The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. 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: [ "Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany)" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001437", "lbl" : "sessile (sensu zoology)", "type" : "CLASS", "meta" : { "definition" : { "val" : "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology)" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001438", "lbl" : "pedicellate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle.", "xrefs" : [ "MedTerms:MedTerms" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001439", "lbl" : "tonicity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli.", "xrefs" : [ "WordNet:WordNet" ] }, "comments" : [ "TODO: we need a clearer differentium between this and contractility - or merge?" ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "tone" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001498" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001440", "lbl" : "homophilic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell.", "xrefs" : [ "GO:GO" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001441", "lbl" : "heterophilic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell.", "xrefs" : [ "GO:GO" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001442", "lbl" : "wholeness", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001443", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0001444" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001444", "lbl" : "broken", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's components no longer being in a single contiguous unit.", "xrefs" : [ "https://orcid.org/0000-0003-4606-0597" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "fragmented" }, { "pred" : "hasNarrowSynonym", "val" : "fractured" }, { "pred" : "hasRelatedSynonym", "val" : "cracked" }, { "pred" : "hasRelatedSynonym", "val" : "hemorrhaged" }, { "pred" : "hasRelatedSynonym", "val" : "split" }, { "pred" : "hasRelatedSynonym", "val" : "torn" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001443" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001820" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001445", "lbl" : "disassembled", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001446", "lbl" : "whole", "type" : "CLASS", "meta" : { "definition" : { "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001447", "lbl" : "calcified", "type" : "CLASS", "meta" : { "definition" : { "val" : "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311).", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "calcareous" }, { "pred" : "hasNarrowSynonym", "val" : "calcification" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001448", "lbl" : "ossified", "type" : "CLASS", "meta" : { "definition" : { "val" : "A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone.", "xrefs" : [ "MAMMALOGY:MAMMALOGY" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001449", "lbl" : "cartilaginous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cartilaginous" ] }, "comments" : [ "Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001450", "lbl" : "edematous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "edemic" }, { "pred" : "hasExactSynonym", "val" : "oedematous" }, { "pred" : "hasExactSynonym", "val" : "oedemic" }, { "pred" : "hasNarrowSynonym", "val" : "edema" }, { "pred" : "hasNarrowSynonym", "val" : "oedema" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001451", "lbl" : "obsolete edematous (sensu botany)", "type" : "CLASS", "meta" : { "definition" : { "val" : "An extended swelling in plant organs caused primarily by an excessive accumulation of water.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "edemic" }, { "pred" : "hasRelatedSynonym", "val" : "oedematous" }, { "pred" : "hasRelatedSynonym", "val" : "oedemic" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001452", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0000141" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001453", "lbl" : "detached from", "type" : "CLASS", "meta" : { "definition" : { "val" : "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "detached" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001454", "lbl" : "sensitivity to oxygen", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001455", "lbl" : "aerobic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001456" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001456", "lbl" : "anaerobic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's independence on oxygen.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001455" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001457", "lbl" : "sensitivity of a process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a process inhering in bearer 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potential caused by the rapid opening and closing of voltage-gated ion channels.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Action_potential" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001464", "lbl" : "electric potential", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electric_potential" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001465", "lbl" : "monstrous", "type" : "CLASS", "meta" : { "definition" : { "val" : "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001466", "lbl" : "curved rostral", "type" : "CLASS", "meta" : { "definition" : { "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "curved anterior" }, { "pred" : "hasExactSynonym", "val" : "curved superior (human torso)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001467", "lbl" : "curved caudal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "curved inferior (human torso)" }, { "pred" : "hasExactSynonym", "val" : "curved posterior" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001468", "lbl" : "curved dorsal", "type" : "CLASS", "meta" : { "definition" : { "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "curved posterior (human torso)" }, { "pred" : "hasExactSynonym", "val" : "curved superior (human head)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001469", "lbl" : "curved ventral", "type" : "CLASS", "meta" : { "definition" : { "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "curved anterior (human torso)" }, { "pred" : "hasExactSynonym", "val" : "curved inferior (human head)" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001470", "lbl" : "ratio", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's magnitude in proportion to the magnitude of another entity." }, "comments" : [ "Examples: height to weight; brain size to body size; root to shoot ratio; urinary sodium to potassium ratio. waist-hip ratio." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "proportion" }, { "pred" : "hasExactSynonym", "val" : "proportionality" }, { "pred" : "hasExactSynonym", "val" : "proportionality to" }, { "pred" : "hasExactSynonym", "val" : "quotient" }, { "pred" : "hasRelatedSynonym", "val" : "rate" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001471", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0001665" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001472", "lbl" : "decreased depth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A depth which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "low depth" }, { "pred" : "hasExactSynonym", "val" : "shallow" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001596" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001692" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001473", "lbl" : "duplicated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's being present in two copies.", "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "doubled" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001474", "lbl" : "anteverted", "type" : "CLASS", "meta" : { "definition" : { "val" : "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward.", "xrefs" : [ "bdid:bdid" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001475", "lbl" : "increased position", "type" : "CLASS", "meta" : { "definition" : { "val" : "A position which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "high position" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001476", "lbl" : "decreased position", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "low position" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001477", "lbl" : "retracted", "type" : "CLASS", "meta" : { "definition" : { "val" : "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point.", "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "moved" }, { "pred" : "hasRelatedSynonym", "val" : "retruded" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001478", "lbl" : "collapsed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in.", "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001479", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0001852" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001480", "lbl" : "spongy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness.", "xrefs" : [ "Answers.com:Answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001481", "lbl" : "sloped", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001482", "lbl" : "prominent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line.", "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001483", "lbl" : "aplastic", "type" : "CLASS", "meta" : { "definition" : { "val" : "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell.", "xrefs" : [ "PATOC:GVG", "PATOC:PortlandMeetingFeb2015" ] }, "comments" : [ "With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure" ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "aplasia" }, { "pred" : "hasExactSynonym", "val" : "undeveloped" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001484", "lbl" : "recent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a process which occurs near to or not long before the present.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001485", "lbl" : "condensed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "compact" }, { "pred" : "hasExactSynonym", "val" : "compressed" }, { "pred" : "hasExactSynonym", "val" : "squashed" }, { "pred" : "hasRelatedSynonym", "val" : "dense" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0002452" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001840" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001486", "lbl" : "chronological age", "type" : "CLASS", "meta" : { "definition" : { "val" : "An age quality that exists by virtue of the time (years and months) that the bearer has existed.", "xrefs" : [ "WordNet:Wordnet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001487", "lbl" : "senescent", "type" : "CLASS", "meta" : { "definition" : { "val" : "A time quality inhering in a bearer by virtue of the bearer's growing old; aging.", "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001488", "lbl" : "cellular motility", "type" : "CLASS", "meta" : { "definition" : { "val" : "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "comments" : [ "Term should be obsoleted and the GO term cellular motility should be used instead." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001489", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0001433" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001490", "lbl" : "heterochronic growth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth.", "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001491", "lbl" : "neotenous growth", "type" : "CLASS", "meta" : { "definition" : { "val" : "A paedomorphic growth quality which is due to a reduced rate.", "xrefs" : [ "PATOC:mh" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "neotenic growth" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001492", "lbl" : "growth rate", "type" : "CLASS", "meta" : { "definition" : { "val" : "The rate or speed of the change in size of an individual entity or change in number of a population.", "xrefs" : [ "https://orcid.org/0000-0002-9900-7880", "https://orcid.org/0000-0003-4606-0597" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001493", "lbl" : "hypertrophic growth", "type" : "CLASS", "meta" : { "comments" : [ "This term will be obsoleted; Use GO:growth and PATO:rate." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001494" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001494", "lbl" : "hypotrophic growth", "type" : "CLASS", "meta" : { "comments" : [ "This term will be obsoleted; Use GO:growth and PATO:rate." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001493" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001495", "lbl" : "notched", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "indented" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001496", "lbl" : "brood quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001497", "lbl" : "brood viability", "type" : "CLASS", "meta" : { "definition" : { "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001498", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0001439" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001499", "lbl" : "spherical", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "globular" }, { "pred" : "hasRelatedSynonym", "val" : "rotund" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000408" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001500", "lbl" : "tapered", "type" : "CLASS", "meta" : { "definition" : { "val" : "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "taper" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001501", "lbl" : "immature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development.", "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "underdeveloped" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001502", "lbl" : "complexity", "type" : "CLASS", "meta" : { "definition" : { "val" : "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded.", "xrefs" : [ "WordNet:WordNet" ] }, "comments" : [ "TODO: obsolete this." ], "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001503", "lbl" : "simple", "type" : "CLASS", "meta" : { "definition" : { "val" : "A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001504", "lbl" : "complex", "type" : "CLASS", "meta" : { "definition" : { "val" : "A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001505", "lbl" : "separated from", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "discontiguous" }, { "pred" : "hasRelatedSynonym", "val" : "divided_from" }, { "pred" : "hasRelatedSynonym", "val" : "splitted from" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001506", "lbl" : "diastatic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy.", "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001507", "lbl" : "disrupted", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001508", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0000297" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "lbl" : "functionality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s).", "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001510", "lbl" : "functional", "type" : "CLASS", "meta" : { "definition" : { "val" : "A functionality quality held by the bearer when the latter is able to perform a regular function(s).", "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001511" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001511", "lbl" : "non-functional", "type" : "CLASS", "meta" : { "definition" : { "val" : "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s).", "xrefs" : [ "PATC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "disfunctional" }, { "pred" : "hasExactSynonym", "val" : "functional failure" }, { "pred" : "hasRelatedSynonym", "val" : "defective" }, { "pred" : "hasRelatedSynonym", "val" : "failure" } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001510" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001640" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001512", "lbl" : "punctate", "type" : "CLASS", "meta" : { "definition" : { "val" : "A pattern inhering in a 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"lbl" : "delaminated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer.", "xrefs" : [ "PATOC:cjm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001515", "lbl" : "variable color", "type" : "CLASS", "meta" : { "definition" : { "val" : "A color quality inhering in a bearer by virtue of the bearer's being uneven in color.", "xrefs" : [ "PATOC:NC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "murky" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001516", "lbl" : "focus", "type" : "CLASS", "meta" : { "definition" : { "val" : "An optical quality where light rays originating from a point on the object converge.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Focus_(optics)" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001517", "lbl" : "focused", "type" : "CLASS", "meta" : { "definition" : { "val" : "An optical quality inhering in a bearer by virtue of the bearer's having focus.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001518", "lbl" : "blurry", "type" : "CLASS", "meta" : { "definition" : { "val" : "An optical quality inhering in a bearer by virtue of the bearer's lacking focus.", "xrefs" : [ "PATOC:NC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001519", "lbl" : "sound quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_quality" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001520", "lbl" : "sound frequency", "type" : "CLASS", "meta" : { "definition" : { "val" : "The frequency of transmitted vibrations.", "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001521", "lbl" : "sound amplitude", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance.", "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasBroadSynonym", "val" : "loudness" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001522", "lbl" : "sound speed", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_speed" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001523", "lbl" : "sound wavelength", "type" : "CLASS", "meta" : { "definition" : { "val" : "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength.", "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_wavelength" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001524", "lbl" : "intrasonic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sound frequency in the range of 0-20 Hz.", "xrefs" : [ "studyphysics:studyphysics" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001525", "lbl" : "sonic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sound frequency in the range of 20 to 20.000 Hz.", "xrefs" : [ "url:http://www.studyphysics.ca/" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001526", "lbl" : "ultrasonic", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sound frequency in the range of 20 000 + Hz.", "xrefs" : [ "studyphysics:studyphysics" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001527", "lbl" : "quiet", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sound amplitude which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001528", "lbl" : "loud", "type" : "CLASS", "meta" : { "definition" : { "val" : "A sound amplitude which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001529", "lbl" : "cellular spatiotemporal quality", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatiotemporal quality inhering in a cell.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001530", "lbl" : "behavioral quality of a process", "type" : "CLASS", "meta" : { "definition" : { "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's behavior.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" 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"xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "evenly colored" }, { "pred" : "hasExactSynonym", "val" : "homogeneously colored" }, { "pred" : "hasExactSynonym", "val" : "uniformly colored" }, { "pred" : "hasRelatedSynonym", "val" : "homogenously pigmented" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001533", "lbl" : "multi-colored", "type" : "CLASS", "meta" : { "definition" : { "val" : "A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "variegated" } ], "basicPropertyValues" : [ { "pred" : 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"http://purl.obolibrary.org/obo/PATO_0001571", "lbl" : "dilated", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001572", "type" : "CLASS", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/PATO_0001784" } ], "deprecated" : true } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001573", "lbl" : "isometrical", "type" : "CLASS", "meta" : { "definition" : { 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"http://purl.obolibrary.org/obo/PATO_0001593", "lbl" : "decreased curvature", "type" : "CLASS", "meta" : { "definition" : { "val" : "A curvature which is relatively low.", "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", "val" : "http://purl.obolibrary.org/obo/PATO_0001592" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001594", "lbl" : "arched", "type" : "CLASS", "meta" : { "definition" : { "val" : "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : 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"basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001602", "lbl" : "distended", "type" : "CLASS", "meta" : { "definition" : { "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size.", "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", "val" : "expanded" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001603", "lbl" : "increased life span", "type" : "CLASS", "meta" : { "definition" : { "val" : "A life span which is relatively high.", "xrefs" : [ "PATO:GVG" ] }, "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "high life 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[ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001608", "lbl" : "patchy", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches.", "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] } }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001609", "lbl" : "sparse", "type" : "CLASS", "meta" : { "definition" : { "val" : "A spatial pattern inhering in a bearer by virtue of the 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