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"http://purl.obolibrary.org/obo/BFO_0000020", "lbl": "specifically dependent continuant", "meta": { "definition": { "val": "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.", "xrefs": [] } }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000040", "lbl": "material entity", "meta": { "definition": { "val": "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", "xrefs": [] } }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000050", "lbl": "part of", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", "val": "is part of" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "my brain is part of my body (continuant parthood, two material entities)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "this day is part of this year (occurrent parthood)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "part_of" }, { "pred": "http://purl.obolibrary.org/obo/RO_0001900", "val": "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred": "http://purl.obolibrary.org/obo/RO_0040042", "val": "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred": "http://purl.obolibrary.org/obo/RO_0040042", "val": "http://purl.obolibrary.org/obo/BFO_0000003" }, { "pred": "http://purl.obolibrary.org/obo/RO_0040042", "val": "http://purl.obolibrary.org/obo/BFO_0000004" }, { "pred": "http://purl.obolibrary.org/obo/RO_0040042", "val": "http://purl.obolibrary.org/obo/BFO_0000017" }, { "pred": "http://purl.obolibrary.org/obo/RO_0040042", "val": "http://purl.obolibrary.org/obo/BFO_0000019" }, { "pred": "http://purl.obolibrary.org/obo/RO_0040042", "val": "http://purl.obolibrary.org/obo/BFO_0000020" }, { "pred": "http://purl.obolibrary.org/obo/RO_0040042", "val": "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "external" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#shorthand", "val": "part_of" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val": "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val": "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val": "http://www.obofoundry.org/ro/#OBO_REL:part_of" } ], "definition": { "val": "a core relation that holds between a part and its whole", "xrefs": [] }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "xrefs": [ { "val": "BFO:0000050" } ] }, "type": "PROPERTY" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000051", "lbl": "has_part", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", "val": "has part" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "my body has part my brain (continuant parthood, two material entities)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "this year has part this day (occurrent parthood)" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "has_part" }, { "pred": "http://purl.obolibrary.org/obo/RO_0001900", "val": "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "external" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#shorthand", "val": "has_part" } ], "comments": [ "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." ], "definition": { "val": "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.", "xrefs": [ "PATOC:CJM" ] }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ], "xrefs": [ { "val": "BFO:0000051" } ] }, "type": "PROPERTY" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000062", "lbl": "preceded by", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", "val": "preceded by" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "is preceded by" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "preceded_by" }, { "pred": "http://purl.org/dc/elements/1.1/source", "val": "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" } ], "definition": { "val": "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs": [] }, "subsets": [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ] }, "type": "PROPERTY" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000063", "lbl": "precedes", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", "val": "precedes" } ], "definition": { "val": "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs": [] }, "subsets": [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ] }, "type": "PROPERTY" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000066", "lbl": "occurs in", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", "val": "occurs in" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "occurs_in" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "unfolds in" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "unfolds_in" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ], "comments": [ "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" ], "definition": { "val": "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", "xrefs": [] }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ] }, "type": "PROPERTY" }, { "id": "http://purl.obolibrary.org/obo/BFO_0000067", "lbl": "contains process", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", "val": "site of" }, { "pred": "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val": "http://purl.obolibrary.org/obo/bfo.owl" } ], "comments": [ "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" ], "definition": { "val": "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", "xrefs": [] } }, "type": "PROPERTY" }, { "id": "http://purl.obolibrary.org/obo/CARO_0000000", "lbl": "anatomical entity", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/caro.owl" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/CARO_0000003", "lbl": "connected anatomical structure", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/caro.owl" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/CARO_0000006", "lbl": "material anatomical entity", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/caro.owl" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/CL_0000000", "lbl": "cell", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/cl.owl" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0003674", "lbl": "molecular_function", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000589", "val": "molecular process" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0005575", "lbl": "cellular_component", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0008372" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "comments": [ "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." ], "definition": { "val": "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).", "xrefs": [ "GOC:pdt", "NIF_Subcellular:sao1337158144" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "cell or subcellular entity", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "cellular component", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "subcellular entity", "xrefs": [ "NIF_Subcellular:nlx_subcell_100315" ] } ], "xrefs": [ { "val": "NIF_Subcellular:sao1337158144" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0005622", "lbl": "intracellular anatomical structure", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000233", "val": "https://github.com/geneontology/go-ontology/issues/17776" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "A component of a cell contained within (but not including) the plasma membrane. In eukaryotes it includes the nucleus and cytoplasm.", "xrefs": [ "ISBN:0198506732" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_plant" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "internal to cell", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "intracellular", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "protoplasm", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "nucleocytoplasm", "xrefs": [ "GOC:mah" ] }, { "pred": "hasRelatedSynonym", "val": "protoplast", "xrefs": [ "GOC:mah" ] } ], "xrefs": [ { "val": "Wikipedia:Intracellular" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0005634", "lbl": "nucleus", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/go.owl" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.", "xrefs": [ "GOC:go_curators" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_drosophila", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "cell nucleus", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "horsetail nucleus", "xrefs": [ "GOC:al", "GOC:mah", "GOC:vw", "PMID:15030757" ] } ], "xrefs": [ { "val": "NIF_Subcellular:sao1702920020" }, { "val": "Wikipedia:Cell_nucleus" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0005886", "lbl": "plasma membrane", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0005904" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.", "xrefs": [ "ISBN:0716731363" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_drosophila", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms": [ { "pred": "hasBroadSynonym", "val": "juxtamembrane", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "cell membrane", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "cellular membrane", "xrefs": [ "NIF_Subcellular:sao6433132645" ] }, { "pred": "hasExactSynonym", "val": "cytoplasmic membrane", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "plasmalemma", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "bacterial inner membrane", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "inner endospore membrane", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "plasma membrane lipid bilayer", "xrefs": [ "GOC:mah" ] } ], "xrefs": [ { "val": "NIF_Subcellular:sao1663586795" }, { "val": "Wikipedia:Cell_membrane" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0005929", "lbl": "cilium", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002161", "val": "http://purl.obolibrary.org/obo/NCBITaxon_3176" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002161", "val": "http://purl.obolibrary.org/obo/NCBITaxon_3312" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002161", "val": "http://purl.obolibrary.org/obo/NCBITaxon_3378" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002161", "val": "http://purl.obolibrary.org/obo/NCBITaxon_3398" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002161", "val": "http://purl.obolibrary.org/obo/NCBITaxon_4890" }, { "pred": "http://purl.obolibrary.org/obo/RO_0002161", "val": "http://purl.obolibrary.org/obo/NCBITaxon_5782" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0072372" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "comments": [ "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." ], "definition": { "val": "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.", "xrefs": [ "GOC:cilia", "GOC:curators", "GOC:kmv", "GOC:vw", "ISBN:0198547684", "PMID:16824949", "PMID:17009929", "PMID:20144998" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_drosophila", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "eukaryotic flagellum", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "microtubule-based flagellum", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "primary cilium", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "flagellum", "xrefs": [] } ], "xrefs": [ { "val": "FMA:67181" }, { "val": "NIF_Subcellular:sao787716553" }, { "val": "Wikipedia:Cilium" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0008150", "lbl": "biological_process", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", "val": "jl" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2012-09-19T15:05:24Z" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0000004" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0007582" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0044699" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "biological_process" } ], "comments": [ "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." ], "definition": { "val": "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.", "xrefs": [ "GOC:pdt" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "biological process", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "physiological process", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "single organism process", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "single-organism process", "xrefs": [] } ], "xrefs": [ { "val": "Wikipedia:Biological_process" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0016020", "lbl": "membrane", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2014-03-06T11:37:54Z" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0098589" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0098805" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.", "xrefs": [ "GOC:dos", "GOC:mah", "ISBN:0815316194" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], "synonyms": [ { "pred": "hasNarrowSynonym", "val": "membrane region", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "region of membrane", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "whole membrane", "xrefs": [] } ], "xrefs": [ { "val": "Wikipedia:Biological_membrane" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0030990", "lbl": "intraciliary transport particle", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "comments": [ "Note that we deem cilia and microtubule-based flagella to be equivalent." ], "definition": { "val": "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules.", "xrefs": [ "GOC:cilia", "GOC:kmv", "PMID:14570576", "PMID:22118932", "PMID:23945166" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "intraflagellar transport complex", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "intraflagellar transport particle", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "IFT complex", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0032991", "lbl": "protein-containing complex", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "GO:0043234" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "comments": [ "A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole." ], "definition": { "val": "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.", "xrefs": [ "GOC:dos", "GOC:mah" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "macromolecular complex", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "macromolecule complex", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "protein containing complex", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "protein complex", "xrefs": [] }, { "pred": "hasNarrowSynonym", "val": "protein-protein complex", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0042995", "lbl": "cell projection", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "A prolongation or process extending from a cell, e.g. a flagellum or axon.", "xrefs": [ "GOC:jl", "http://www.cogsci.princeton.edu/~wn/" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms": [ { "pred": "hasBroadSynonym", "val": "cell process", "xrefs": [] }, { "pred": "hasBroadSynonym", "val": "cellular process", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "cellular projection", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0043226", "lbl": "organelle", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.", "xrefs": [ "GOC:go_curators" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "xrefs": [ { "val": "NIF_Subcellular:sao1539965131" }, { "val": "Wikipedia:Organelle" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0043227", "lbl": "membrane-bounded organelle", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", "xrefs": [ "GOC:go_curators" ] }, "synonyms": [ { "pred": "hasExactSynonym", "val": "membrane-enclosed organelle", "xrefs": [] } ], "xrefs": [ { "val": "NIF_Subcellular:sao414196390" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0043229", "lbl": "intracellular organelle", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.", "xrefs": [ "GOC:go_curators" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_pir" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0043231", "lbl": "intracellular membrane-bounded organelle", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", "xrefs": [ "GOC:go_curators" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "intracellular membrane-enclosed organelle", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0044464", "lbl": "cell part", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/go.owl" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0071944", "lbl": "cell periphery", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", "val": "mah" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2010-10-04T01:51:47Z" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.", "xrefs": [ "GOC:mah" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0098590", "lbl": "plasma membrane region", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", "val": "dos" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2014-03-06T11:55:32Z" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "comments": [ "Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass." ], "definition": { "val": "A membrane that is a (regional) part of the plasma membrane.", "xrefs": [ "GOC:dos" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "region of plasma membrane", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0098796", "lbl": "membrane protein complex", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "Any protein complex that is part of a membrane.", "xrefs": [ "GOC:dos" ] }, "subsets": [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0098797", "lbl": "plasma membrane protein complex", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "Any protein complex that is part of the plasma membrane.", "xrefs": [ "GOC:dos" ] } }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0110165", "lbl": "cellular anatomical entity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", "val": "kmv" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2019-08-12T18:01:37Z" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", "xrefs": [ "GOC:kmv" ] } }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0120025", "lbl": "plasma membrane bounded cell projection", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000233", "val": "https://github.com/geneontology/go-ontology/issues/13193" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#created_by", "val": "krc" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", "val": "2017-03-21T17:26:07Z" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "cellular_component" } ], "definition": { "val": "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.", "xrefs": [ "GOC:krc" ] } }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/GO_0140513", "lbl": "nuclear protein-containing 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[ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000003", "lbl": "obsolete assay", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000004", "lbl": "mobility", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "Should be defined using translocation." ], "definition": { "val": "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000005", "lbl": "obsolete absolute activity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000006", "lbl": "obsolete process", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000007", "lbl": "obsolete relative activity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000008", "lbl": "speed", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.", "xrefs": [ "Wikipedia:http://en.wikipedia.org/wiki/Velocity" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "velocity", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000009", "lbl": "obsolete absolute speed", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000010", "lbl": "obsolete relative speed", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000011", "lbl": "age", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A time quality inhering in a bearer by virtue of how long the bearer has existed.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000012", "lbl": "obsolete absolute age", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000013", "lbl": "obsolete relative age", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000014", "lbl": "color", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000020" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A composite chromatic quality composed of hue, saturation and intensity parts.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "colour", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "relative color", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000015", "lbl": "color hue", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra.", "xrefs": [ "PATOC:cjm" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000016", "lbl": "color brightness", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch." ], "definition": { "val": "A scalar optical property that is the intensity, value or amount of perceived light.", "xrefs": [ "PATOC:MAH" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "color intensity", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "color lightness", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "color value", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000017", "lbl": "color saturation", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity." ], "definition": { "val": "A scalar chromatic property that is the degree of purity of perceived light.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000018", "lbl": "fluorescence", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000019", "lbl": "color pattern", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A chromatic property that is the relative position of different hues or degrees of saturation.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000021", "lbl": "compatibility", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality." ], "definition": { "val": "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000022", "lbl": "obsolete gametophytic compatability", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000023", "lbl": "obsolete relative compatability", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000024", "lbl": "obsolete sporophytic compatability", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000025", "lbl": "composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0002015" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood)." ], "definition": { "val": "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "composed of", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "compositionality", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "content", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "structure, composition", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000026", "lbl": "obsolete carbohydrate composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000027", "lbl": "obsolete electrolyte composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000028", "lbl": "obsolete macromolecular composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000029", "lbl": "obsolete protein composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000030", "lbl": "obsolete enzyme composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000031", "lbl": "obsolete metabolite composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000032", "lbl": "obsolete secondary product composition", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000033", "lbl": "concentration of", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.", "xrefs": [ "Wikipedia:http://en.wikipedia.org/wiki/concentration" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "concentration", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000034", "lbl": "obsolete protein concentration", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000035", "lbl": "obsolete carbohydrate concentration", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000036", "lbl": "obsolete water content", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000037", "lbl": "consistency", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "firmness", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000038", "lbl": "obsolete gel consistency", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000039", "lbl": "direction", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "TODO: consider merging with angular placement." ], "definition": { "val": "A physical quality inhering in a bearer by virtue of the bearer's orientation in space.", "xrefs": [ "thesaurus.maths:thesaurus.maths" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000040", "lbl": "distance", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality that is the extent of space between two entities.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000041", "lbl": "obsolete absolutedistance", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000042", "lbl": "obsolete relative distance", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000043", "lbl": "flavor", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000044", "lbl": "frequency", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.", "xrefs": [ "Wikipedia:http://en.wikipedia.org/wiki/frequency" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000045", "lbl": "obsolete absolute frequency", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000046", "lbl": "obsolete relative frequency", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000047", "lbl": "biological sex", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.", "xrefs": [ "MGED:MGED" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000048", "lbl": "hardness", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced", "xrefs": [ "merriam-webster:merriam-webster" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "impenetrability", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "toughness", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000049", "lbl": "intensity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000050", "lbl": "life span", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A time quality inhering in a bearer by virtue of the bearer's expected maximum age.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000051", "lbl": "morphology", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000052", "lbl": "shape", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0001647" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects." ], "definition": { "val": "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "relational shape quality", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000054", "lbl": "obsolete absolute number", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000055", "lbl": "obsolete relative number", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000056", "lbl": "trophic quality", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.", "xrefs": [ "Wikipedia:http://en.wikipedia.org/wiki/Trophic_level" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "nutritional quality", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000057", "lbl": "occurrence", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000156" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000158" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms": [ { "pred": "hasBroadSynonym", "val": "temporal", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "incidence", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000058", "lbl": "odor", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000059", "lbl": "obsolete parental quality", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent.", "xrefs": [ "WordNet:WordNet" ] }, "deprecated": true, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "parental type", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000060", "lbl": "spatial pattern", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000132" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0001565" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "distribution", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "pattern", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000061", "lbl": "obsolete relative pattern", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000062", "lbl": "sleep pattern", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000063", "lbl": "obsolete percentage", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000064", "lbl": "obsolete absolute percentage", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000065", "lbl": "obsolete relative percentage", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000066", "lbl": "pilosity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000067", "lbl": "obsolete relative pilosity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000068", "lbl": "qualitative", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "TODO: define this or obsolete it and move children somewhere else." ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000069", "lbl": "deviation (from_normal)", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000070", "lbl": "amount", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000053" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000071" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0001169" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0001226" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "This term was originally named \"presence\". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10." ], "definition": { "val": "The number of entities of this type that are part of the whole organism.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "presence or absence in organism", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "quantitative", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "count in organism", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "number", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "presence", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000073", "lbl": "obsolete relative_quality", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000074", "lbl": "obsolete shattering", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000075", "lbl": "obsolete threshability", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000076", "lbl": "obsolete regulation", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000077", "lbl": "response to", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "reactivity", "xrefs": [ "GOC:CJM" ] }, { "pred": "hasRelatedSynonym", "val": "response", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "responsivity", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000078", "lbl": "rhythm quality", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions.", "xrefs": [ "answers.com:answers.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000079", "lbl": "obsolete absolute rhythym", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000080", "lbl": "amplitude", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", "xrefs": [ "thesaurus.maths:thesaurus.maths" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000082", "lbl": "persistence", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", "xrefs": [ "reference.com:reference.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000083", "lbl": "phase", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality that exists by virtue of being a particular point in the time of a cycle.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000084", "lbl": "obsolete relative rhythym", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000085", "lbl": "sensitivity toward", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "sensitivity", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000086", "lbl": "obsolete absolute sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000087", "lbl": "obsolete disease sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000088", "lbl": "obsolete absolute disease sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000089", "lbl": "obsolete relative disease sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000090", "lbl": "obsolete relative sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000091", "lbl": "obsolete stress sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000092", "lbl": "obsolete abiotic stress sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000093", "lbl": "obsolete chemical sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000094", "lbl": "obsolete drug sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000095", "lbl": "obsolete absolute drug sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000096", "lbl": "obsolete relative drug sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000097", "lbl": "obsolete herbicide sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000098", "lbl": "obsolete insecticide sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000099", "lbl": "obsolete plant growth hormone sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000100", "lbl": "obsolete soil composition sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000101", "lbl": "obsolete soil nutrient sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000102", "lbl": "obsolete macronutrient sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000103", "lbl": "obsolete micronutrient sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000104", "lbl": "obsolete osmotic response sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000105", "lbl": "obsolete p h sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000106", "lbl": "obsolete acid sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000107", "lbl": "obsolete alkali sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000108", "lbl": "obsolete salt sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000109", "lbl": "obsolete water sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000110", "lbl": "obsolete drought sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000111", "lbl": "obsolete flooding sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000112", "lbl": "obsolete humidity sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000113", "lbl": "obsolete radiation sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000114", "lbl": "obsolete temperature sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000115", "lbl": "obsolete absolute temperature sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000116", "lbl": "obsolete relative temperature sensitivity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000117", "lbl": "size", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000118", "lbl": "obsolete absolute size", "meta": { 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"definition": { "val": "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.", "xrefs": [ "PATOC:JE" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "angular placement", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "amount of rotation", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "angle", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "angular magnitude", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "plane angle", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000134", "lbl": "obsolete absolute_angle", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, 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true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000139", "lbl": "obsolete relative orientation", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000140", "lbl": "position", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0001032" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0001631" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": 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"quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000251", "lbl": "obsolete startle reflex", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000252", "lbl": "obsolete suckling reflex", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000253", "lbl": "obsolete swallowing reflex", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000254", "lbl": "obsolete vibrissae reflex", "meta": { "basicPropertyValues": [ { "pred": 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"type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000265", "lbl": "obsolete relative visual_ability", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000266", "lbl": "obsolete absolute visual_acuity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000267", "lbl": "obsolete relative visual_acuity", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000268", "lbl": "obsolete absolute visual threshold", "meta": { "basicPropertyValues": [ { "pred": 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[ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "litter size", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000277", "lbl": "female fertility", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000278", "lbl": "obsolete hybrid fertility", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000279", "lbl": "male fertility", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000280", "lbl": "obsolete backcross fertility", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000281", "lbl": "obsolete cytoplasmic sterility", "meta": { "basicPropertyValues": [ { "pred": 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{ "id": "http://purl.obolibrary.org/obo/PATO_0000289", "lbl": "obsolete respiratory rate", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000290", "lbl": "obsolete absolute respiratory rate", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000291", "lbl": "obsolete relative respiratory rate", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000292", "lbl": "obsolete mobility value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000293", "lbl": "obsolete absolute activity value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000294", "lbl": "obsolete process value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000295", "lbl": "obsolete relative activity value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000296", "lbl": "obsolete speed value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000297", "lbl": "arrested", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0001508" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "TODO: the definition is incorrect. See absent." ], "definition": { "val": "A quality of a process which ends earlier than the natural end time or reference process.", "xrefs": [ "PATOC:LC" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "abolished", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "incomplete", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000298", "lbl": "obsolete not arrested value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000299", "lbl": "mobile", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000300" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000300", "lbl": "immobile", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000299" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "fixed", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000301", "lbl": "obsolete absolute speed value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000302", "lbl": "obsolete relative speed value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000303", "lbl": "increased speed", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000304" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A speed which is relatively high.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "high speed", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "fast speed", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000304", "lbl": "decreased speed", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000303" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A speed which is relatively low.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "slow", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "slow speed", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000305", "lbl": "obsolete age value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", 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"http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000367", "lbl": "right", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000368", "lbl": "obsolete towards1", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000369", "lbl": "obsolete unidirectional", "meta": { "basicPropertyValues": [ { "pred": 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"CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000400", "lbl": "obsolete morphology value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000401", "lbl": "obsolete shape value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000402", "lbl": "branched", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000414" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A branchiness quality inhering in a bearer by virtue of the bearer's having branches.", "xrefs": [ "WordNet:WordNet" ] }, 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"lbl": "oblate", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "oblate spheroid", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000410", "lbl": "pinnate", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "feather-like", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "of a leaf shape", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000411", "lbl": "circular", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.", "xrefs": [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "round", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "rounded", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000413", "lbl": "square", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form.", "xrefs": [ "answers.com:answers.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000414", "lbl": "unbranched", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000402" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000415", "lbl": "uncoiled", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000404" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals).", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000416", "lbl": "obsolete count value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000417", "lbl": "obsolete absolute number value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000418", "lbl": "obsolete relative number value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000421", "lbl": "obsolete nutritional value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000422", "lbl": "auxotrophic", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000423" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.", "xrefs": [ "Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000423", "lbl": "prototrophic", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000422" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth.", "xrefs": [ "Wikipedia:http://en.wikipedia.org/wiki/Prototrophic" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000424", "lbl": "obsolete occurence value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000425", "lbl": "obsolete continual", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000427", "lbl": "recurrent", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000428" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly.", "xrefs": [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000428", "lbl": "sporadic", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000427" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances.", "xrefs": [ "PATO:MAH", "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000430", "lbl": "obsolete unique", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000431", "lbl": "obsolete odor value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000432", "lbl": "obsolete parental type value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000433", "lbl": "obsolete paternal", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father.", "xrefs": [ "WordNet:WordNet" ] }, "deprecated": true, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000434", "lbl": "obsolete maternal", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother.", "xrefs": [ "WordNet:WordNet" ] }, "deprecated": true, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000435", "lbl": "obsolete pattern value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000436", "lbl": "obsolete concrete", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000437", "lbl": "obsolete sleep pattern value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000438", "lbl": "invariant", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0001227" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation.", "xrefs": [ "Dictionary:http://dictionary.reference.com/" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "uniform", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "constant", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000439", "lbl": "obsolete perseverative", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000440", "lbl": "regular spatial pattern", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000330" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000441", "lbl": "repetitive", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition.", "xrefs": [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000442", "lbl": "obsolete insomnia", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "Consider NBO:0000422." ], "definition": { "val": "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep.", "xrefs": [ "WordNet:WordNet" ] }, "deprecated": true, "subsets": [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000443", "lbl": "obsolete narcolepsy", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "Consider NBO:0000423" ], "definition": { "val": "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis.", "xrefs": [] }, "deprecated": true, "subsets": [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000444", "lbl": "obsolete percentage value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000445", "lbl": "obsolete relative percentage value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000446", "lbl": "obsolete absolute percentage value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000447", "lbl": "obsolete decreased percentage", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000448", "lbl": "obsolete high percentage", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000449", "lbl": "obsolete increased percentage", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000450", "lbl": "obsolete low percentage", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000451", "lbl": "obsolete pilosity value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000452", "lbl": "obsolete relative pilosity value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000453", "lbl": "glabrous", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles.", "xrefs": [ "PATOC:CJM", "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "hairless", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000454", "lbl": "hairy", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": 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"http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "asymmetric", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "asymmetry", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000617", "lbl": "bent", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.", "xrefs": [ "PATOC:MAH" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "angled", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "flexed", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000618", "lbl": "bilateral", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided.", "xrefs": [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000619", "lbl": "crowded", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000633" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A positional quality inhering in a bearer by virtue of the bearer's being overfilled.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000620", "lbl": "wholly dorsalized", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures.", "xrefs": [ "PATOC:melissa" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "dorsalized", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000622", "lbl": "erect", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "upright", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000623", "lbl": "exserted", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body.", "xrefs": [ "sdvc:sdvc" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "prolapse", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "prolapsed", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000624", "lbl": "inserted into", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity.", "xrefs": [ "PATOC:nw" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "inserted", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "introduced into", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000625", "lbl": "inverted", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "backward", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "reversed", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000626", "lbl": "lateralized", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral.", "xrefs": [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000627", "lbl": "localized", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "focal", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "localised", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000628", "lbl": "mislocalised", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000621" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "ectopic", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "mislocalized", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000629", "lbl": "misrouted", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed.", "xrefs": [ "NDI:NDI" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000630", "lbl": "wholly posterioralized", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "posterioralized", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000631", "lbl": "prostrate", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground.", "xrefs": [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000632", "lbl": "symmetrical", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "comments": [ "similar pattern in both halves" ], "definition": { "val": "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "symmetric", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000633", "lbl": "uncrowded", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000619" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000634", "lbl": "unilateral", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000635", "lbl": "unlocalised", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location.", "xrefs": [ "WordNet:WordNet" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000636", "lbl": "wholly ventralized", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasRelatedSynonym", "val": "ventralized", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000637", "lbl": "obsolete structure value", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000638", "lbl": "apoptotic", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "xrefs": [ { "val": "GO:0006915" } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000639", "lbl": "degenerate", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0002038" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process.", "xrefs": [ "PATOC:PortlandMeetingFeb2015", "PATOC:mb" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasNarrowSynonym", "val": "degeneration", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000640", "lbl": "dysplastic", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells.", "xrefs": [ "PATOC:MAH" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasNarrowSynonym", "val": "dysplasia", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000641", "lbl": "obsolete deposition defective", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000642", "lbl": "fused with", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000651" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "fused", "xrefs": [] }, { "pred": "hasExactSynonym", "val": "fused to", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "coalesced", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "joined with", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "merged with", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000643", "lbl": "herniated", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it.", "xrefs": [ "spinalstenosis:spinalstenosis" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000644", "lbl": "hyperplastic", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000645" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000943" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.", "xrefs": [ "Wikipedia:http://en.wikipedia.org/wiki/Hyperplastic" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "hyperplasia", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "overdeveloped", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000645", "lbl": "hypoplastic", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/RO_0002604", "val": "http://purl.obolibrary.org/obo/PATO_0000644" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val": "PATO:0000942" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.", "xrefs": [ "PATOC:GVG" ] }, "subsets": [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms": [ { "pred": "hasExactSynonym", "val": "hypoplasia", "xrefs": [] }, { "pred": "hasRelatedSynonym", "val": "underdeveloped", "xrefs": [] } ] }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/PATO_0000646", "lbl": "malformed", "meta": { "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val": "quality" } ], "definition": { "val": "A morphological quality inhering in a bearer by 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