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\n", "\n", "# MRI analysis in Python using Nipype, Nilearn and more\n", "\n", "### workshop at the Weizmann Institute of Science, October 2021\n", "\n", "`Python` is on its way to become the most used programming language in `neuroscience`. It is easy to understand, can be learned rather quickly and has a very strong and helpful community behind it. There exist many amazing `neuroimaging` software packages, such as `Nipype`, `Nilearn`, `fMRIPrep` and more which facilitate the everyday life of a neuroscientist.\n", "\n", "The goal of this 2-day workshop is to introduce participants to many different `neuroimaging toolboxes`, the Python framework around it and everything you need to know about [Nipype](https://nipype.readthedocs.io/en/latest/) to start creating your own `pipelines` and optimizing your `workflows`.\n", "\n", "
Workshop overview10-11
Explore MRI data with Nibabel and NilearnThis section involves exercises and individual exploration of notebooks.
\n", "\n", "\n", "11-11:30
Introduction to Nipype11:30-12:30
Exploration of Nipype's building blocksThis section involves exercises and individual exploration of notebooks.
\n", "\n", "12:30-1:30
Creating a Nipype Pipeline from A-ZThis section involves exercises and individual exploration of notebooks.
\n", "\n", "\n", "1:30-2
Complex processing pipelines based on Nipype2-...
Open ended for questions10-11
PyBIDS and statistical analysis of fMRI dataThis section involves exercises and individual exploration of notebooks.
\n", "\n", "\n", "11-12
Functional connectivityThis section involves exercises and individual exploration of notebooks.
\n", "\n", "12-1
Machine learning I1-1:30
Machine learning IIThis section involves exercises and individual exploration of notebooks.
\n", "\n", "1:30-2
The python-neuroimaging ecosystem 2-...
Open ended for questions