taxrank.owl
type: Ontology
version IRI: taxrank.owl
has ontology root term: taxonomic_rank
has ontology root term: pseudorank
contributor: https://orcid.org/0000-0001-6512-3296
contributor: https://orcid.org/0000-0003-4423-4370
license: https://creativecommons.org/publicdomain/zero/1.0/
default-namespace: taxonomic_rank
has_obo_format_version: 1.2
comment: To the extent possible under law, Peter E. Midford has waived all copyright and related or neighboring rights to the Taxonomic Rank Vocabulary (TAXRANK). This work is published from the United States. It is requested that users of this vocabulary cite it at the following URI: http://www.phenoscape.org/wiki/Taxonomic_Rank_Vocabulary

example of usage
type: AnnotationProperty
has_obo_namespace: iao
id: IAO:0000112
is metadata tag: true

definition
type: AnnotationProperty

has ontology root term
type: AnnotationProperty
has_obo_namespace: iao
id: IAO:0000700
is metadata tag: true

has_rank
type: AnnotationProperty
has_obo_namespace: taxonomic_rank
id: TAXRANK:1000000
is metadata tag: true

created by
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

id
type: AnnotationProperty

taxonomic_rank
type: Class
definition: A level of depth of a taxon in a taxonomic hierarchy.
created by: orcid:0000-0001-6512-3296
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000000

phylum
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:phylum
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Phylum
has_exact_synonym: division
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000001

class
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:class
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Class
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000002

order
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:order
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Order
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000003

family
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:family
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Family
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000004

genus
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:genus
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Genus
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000005

species
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:species
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Species
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000006

subclass
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:subclass
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subclass
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000007

subphylum
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:subphylum
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#SubPhylum
has_exact_synonym: subdivision
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000008

subgenus
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:subgenus
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subgenus
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000009

species_group
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:species_group
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000010

species_subgroup
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:species_subgroup
has_exact_synonym: species complex
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000011

species_complex
type: Class
subclass of: taxonomic_rank
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000012

infraorder
type: Class
subclass of: taxonomic_rank
database_cross_reference: NCBITaxon:infraorder
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infraorder
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000013

suborder
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:suborder
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Suborder
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000014

superclass
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:superclass
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Superclass
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000015

varietas
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:varietas
has_exact_synonym: variety
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000016

kingdom
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:kingdom
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Kingdom
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000017

superfamily
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:superfamily
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Superfamily
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000018

infraclass
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:infraclass
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infraclass
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000019

superorder
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:superorder
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Superorder
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000020

parvorder
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:parvorder
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000021

superkingdom
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:superkingdom
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Superkingdom
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000022

subspecies
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:subspecies
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subspecies
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000023

subfamily
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:subfamily
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subfamily
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000024

tribe
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:tribe
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Tribe
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000025

forma
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:forma
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Form
has_exact_synonym: form
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000026

superphylum
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:superphylum
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Superphylum
has_exact_synonym: superdivision
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000027

subtribe
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:subtribe
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subtribe
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000028

subkingdom
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:subkingdom
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subkingdom
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000029

section
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Section
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000030

series
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Series
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000031

bio-variety
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Bio-variety
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000032

candidate
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Candidate
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000033

cultivar
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Cultivar
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000034

cultivar-group
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Cultivar-group
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000035

denominationclass
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#DenominationClass
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000036

domain
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:domain
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Domain
has_exact_synonym: empire
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000037

graft-chimaera
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Graft-chimaera
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000038

grex
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Grex
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000039

infraphylum
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infraphylum
has_exact_synonym: infradivision
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000040

infrafamily
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infrafamily
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000041

infragenerictaxon
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#InfragenericTaxon
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000042

infragenus
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infragenus
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000043

infrakingdom
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infrakingdom
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000044

infraspecies
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infraspecies
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000045

infraspecificTaxon
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#InfraspecificTaxon
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000046

infratribe
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Infratribe
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000047

patho-variety
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#patho-variety
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000048

specialform
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Specialform
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000049

speciesaggregate
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#SpeciesAggregate
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000050

subvariety
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: NCBITaxon:subvariety
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Sub-Variety
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000051

subsubvariety
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Sub-Sub-Variety
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000052

subsection
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subsection
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000053

subseries
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subseries
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000054

subspecificaggregate
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#SubspecificAggregate
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000055

subsubform
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Subsubform
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000056

supertribe
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#Supertribe
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000057

supragenerictaxon
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
database_cross_reference: http://rs.tdwg.org/ontology/voc/TaxonRank#SupragenericTaxon
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000058

subform
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0001-6512-3296
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000059

no_rank
type: Class
subclass of: taxonomic_rank
definition: A token asserting that the taxon was not assigned a rank.
created by: orcid:0000-0001-6512-3296
has_obo_namespace: taxonomic_rank
id: TAXRANK:0000060

strain
type: Class
subclass of: taxonomic_rank
example of usage: Azotobacter chroococcum (strain mcd 1) (NCBITaxon:355) has rank strain
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:strain
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001001

isolate
type: Class
subclass of: taxonomic_rank
example of usage: Plasmodium falciparum FCR-3/Gambia (NCBITaxon:5838) is an isolate
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:isolate
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001002

serotype
type: Class
subclass of: taxonomic_rank
example of usage: Bovine adenovirus 3 (NCBITaxon:10510) has rank serotype
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:serotype
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001003

clade
type: Class
subclass of: taxonomic_rank
example of usage: Embryophyta (NCBITaxon:3193) has rank clade
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:clade
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001004

forma specialis
type: Class
subclass of: taxonomic_rank
example of usage: Fusarium oxysporum f. sp. cucumerinum (NCBITaxon:5508) has rank forma specialis
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:forma_specialis
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001005

serogroup
type: Class
subclass of: taxonomic_rank
example of usage: Neisseria meningitidis serogroup B (NCBITaxon:491) has rank serogroup
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:serogroup
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001006

genotype
type: Class
subclass of: taxonomic_rank
example of usage: Hepatitis C virus genotype 4 (NCBITaxon:33745) has rank genotype
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:genotype
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001007

biotype
type: Class
subclass of: taxonomic_rank
example of usage: Haemophilus influenzae biotype aegyptius (NCBITaxon:725) has rank biotype
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:biotype
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001008

morph
type: Class
subclass of: taxonomic_rank
example of usage: Acontias orientalis morph lineacauda (NCBITaxon:304407) has rank morph
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:morph
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001009

cohort
type: Class
subclass of: taxonomic_rank
example of usage: Polyneoptera (NCBITaxon:33341) has rank cohort
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:cohort
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001010

pathogroup
type: Class
subclass of: taxonomic_rank
example of usage: Xanthomonas axonopodis subcluster 9.1 (NCBITaxon:1982676) has rank pathogroup
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:pathogroup
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001011

subcohort
type: Class
subclass of: taxonomic_rank
example of usage: Ostariophysi (NCBITaxon:32519) has rank subcohort
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:subcohort
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001012

realm
type: Class
subclass of: taxonomic_rank
created by: orcid:0000-0003-4423-4370
database_cross_reference: NCBITaxon:realm
has_obo_namespace: taxonomic_rank
id: TAXRANK:0001013

pseudorank
type: Class
definition: covers ranks in NCBI taxonomy that don't fit in the normal hierarchy
created by: orcid:0000-0003-4423-4370
has_obo_namespace: taxonomic_rank
id: TAXRANK:9000000

acellular root
type: Class
subclass of: pseudorank
created by: orcid:0000-0003-4423-4370
has_obo_namespace: taxonomic_rank
id: TAXRANK:9000001

cellular root
type: Class
subclass of: pseudorank
created by: orcid:0000-0003-4423-4370
has_obo_namespace: taxonomic_rank
id: TAXRANK:9000002