======================== | METHOD - OBSERVATION | ======================== NOTICE: We have only included methods that could be downloaded and installed from the internet. For many methods we needed to develop scripts to automatically download, install and run. From the methods that we hadn't success, we would appreciate reply from the authors. ================================================== METHOD > STATE ================================================== LZMA > Successfully installed and used GZIP > Successfully installed and used IDOCOMP > Successfully installed and used DNACOMPACT > Genomic sequences compressor only (we did not include reference-free genomic compression in the results) GECO > Successfully installed and used ERGC > Successfully installed and used GREEN > Successfully installed and used COGI > Problems setting reference-free compression parameters, authors have been emailed. No reply until today (23 september, 2016) GDC2 > Successfully installed and used DNAZIP > Error on compilation FRESCO > Problems settings parameters ORCOM > Only compress bases : unfair to compare with other methods. some problems trying multithreading appear DSRC > Successfully installed and used MFCOMPRESS > Successfully installed and used DELIMINATE > Successfully installed and used FQC > Problems while running FQZCOMP > Successfully installed and used QUIP > Successfully installed and used GRS > Old version. We decided not to include NGC > Unable to run. Unknown error ABRC > Missing following instructions DEEZ > Successfully installed and used SCALCE > Successfully installed and used LWFQZIP > Error while running: segmentation fault LEON > It does not work with human and chimpanze (it enters in an infinite loop). Cause seems to be the size of the read (number of bases between headers). it works on rice SAMCOMP > Successfully installed and used