channels:
- https://packages.qiime2.org/qiime2/2025.4/pathogenome/passed
- conda-forge
- bioconda
dependencies:
- biom-format=2.1.16
- bowtie2=2.5.1
- h5py=3.11.0
- hdf5=1.14.3
- mafft=7.526
- matplotlib=3.8.4
- notebook=6.5.5
- numpy=1.26.4
- pandas=2.2.2
- parsl=2024.4.15
- patsy=0.5.6
- pysam=0.22.1
- python=3.10
- q2-alignment=2025.4.0.dev0+7.g5073163
- q2-amrfinderplus=2025.4.0.dev0+37.g2de602b
- q2-assembly=2025.4.0.dev0+10.gd551bbb
- q2-demux=2025.4.0.dev0+8.g10f924a
- q2-feature-classifier=2025.4.0.dev0+9.gc64bc5c
- q2-feature-table=2025.4.0.dev0+13.g0ed9a00
- q2-longitudinal=2025.4.0.dev0+8.g3131278
- q2-metadata=2025.4.0.dev0+8.g66139ab
- q2-mystery-stew=2025.4.0.dev0+8.g9b6c7a8
- q2-quality-control=2025.4.0.dev0+11.g3c60c1f
- q2-sample-classifier=2025.4.0.dev0+8.gf4db42f
- q2-taxa=2025.4.0.dev0+8.g095dbe6
- q2-types=2025.4.0.dev0+15.g0e41949
- q2-viromics=2025.4.0.dev0+15.g0469191
- q2-vizard=2025.4.0.dev0+90.ga641e5c
- q2cli=2025.4.0.dev0+14.g13c6e4d
- q2templates=2025.4.0.dev0+7.g55d3090
- qiime2=2025.4.0.dev0+15.gb11fe02
- r-base=4.3.3
- r-reticulate=1.36.0
- rescript=2025.4.0.dev0+17.gaeb7832
- rnanorm=2.1.0
- scikit-bio=0.6.2
- scikit-learn=1.4.2
- scipy=1.13.0
- seaborn=0.12.2
- spades=4.0.0
- unifrac-binaries=1.4
- unifrac=1.3
- vsearch=2.22.1
extras:
  variant_override:
    qiime2_epoch: '2025.4'