channels:
- conda-forge
- bioconda
- https://packages.qiime2.org/qiime2/2026.4/pathogenome/released
dependencies:
- _openmp_mutex=4.5
- _python_abi3_support=1.0
- _r-mutex=1.0.1
- absl-py=2.4.0
- alsa-lib=1.2.15.3
- annotated-doc=0.0.4
- annotated-types=0.7.0
- appdirs=1.4.4
- aragorn=1.2.41
- archspec=0.2.5
- aria2=1.37.0
- array-api-compat=1.14.0
- asttokens=3.0.1
- astunparse=1.6.3
- atpublic=7.0.0
- attrs=26.1.0
- aws-c-auth=0.8.6
- aws-c-cal=0.8.7
- aws-c-common=0.12.0
- aws-c-compression=0.3.1
- aws-c-event-stream=0.5.4
- aws-c-http=0.9.4
- aws-c-io=0.17.0
- aws-c-mqtt=0.12.2
- aws-c-s3=0.7.13
- aws-c-sdkutils=0.2.3
- aws-checksums=0.2.3
- aws-crt-cpp=0.31.0
- aws-sdk-cpp=1.11.510
- azure-core-cpp=1.14.0
- azure-identity-cpp=1.10.0
- azure-storage-blobs-cpp=12.13.0
- azure-storage-common-cpp=12.8.0
- azure-storage-files-datalake-cpp=12.12.0
- bibtexparser=1.4.4
- binutils_impl_linux-64=2.45.1
- biom-format=2.1.17
- biopython=1.87
- blast=2.17.0
- brotli=1.1.0
- brotli-bin=1.1.0
- brotli-python=1.1.0
- bwidget=1.10.1
- bz2file=0.98
- bzip2=1.0.8
- c-ares=1.34.6
- ca-certificates=2026.5.20
- cached-property=1.5.2
- cached_property=1.5.2
- cairo=1.18.4
- certifi=2026.5.20
- cffi=2.0.0
- chardet=7.4.3
- charset-normalizer=3.4.7
- checkv=1.1.1
- click=8.1.8
- colorama=0.4.6
- comm=0.2.3
- conda-pack=0.9.1
- contourpy=1.3.3
- cpython=3.12.13
- curl=8.18.0
- cycler=0.12.1
- cyrus-sasl=2.1.28
- dbus=1.16.2
- decorator=5.3.1
- diamond=2.2.0
- dill=0.4.1
- double-conversion=3.3.1
- entrez-direct=24.0
- exceptiongroup=1.3.1
- executing=2.2.1
- fastcluster=1.3.0
- filelock=3.29.0
- flatbuffers=24.12.23
- flufl.lock=9.1.0
- font-ttf-dejavu-sans-mono=2.37
- font-ttf-inconsolata=3.000
- font-ttf-source-code-pro=2.038
- font-ttf-ubuntu=0.83
- fontconfig=2.18.0
- fonts-conda-ecosystem=1
- fonts-conda-forge=1
- fonttools=4.63.0
- freetype=2.14.3
- fribidi=1.0.16
- frictionless=5.5.0
- gast=0.7.0
- gawk=5.4.0
- gcc_impl_linux-64=15.2.0
- genomad=1.11.2
- gflags=2.2.2
- gfortran_impl_linux-64=15.2.0
- giflib=5.2.2
- glog=0.7.1
- gmp=6.3.0
- google-pasta=0.2.0
- graphite2=1.3.14
- grpcio=1.67.1
- gsl=2.7
- gxx_impl_linux-64=15.2.0
- h2=4.3.0
- h5py=3.15.1
- harfbuzz=12.2.0
- hdf5=1.14.6
- hmmer=3.4
- hpack=4.1.0
- htslib=1.23
- humanize=4.15.0
- hyperframe=6.1.0
- icu=75.1
- idna=3.15
- ijson=3.5.0
- importlib-metadata=9.0.0
- iniconfig=2.3.0
- iow=1.0.8
- ipython=9.13.0
- ipython_pygments_lexers=1.1.1
- ipywidgets=8.1.8
- isodate=0.7.2
- jedi=0.19.2
- jinja2=3.1.6
- joblib=1.5.3
- jsonschema=4.26.0
- jsonschema-specifications=2025.9.1
- jupyterlab_widgets=3.0.16
- kcounter=0.1.2
- keras=3.14.1
- kernel-headers_linux-64=4.18.0
- keyutils=1.6.3
- kiwisolver=1.5.0
- krb5=1.21.3
- lcms2=2.19.1
- ld_impl_linux-64=2.45.1
- lerc=4.1.0
- libabseil=20240722.0
- libaec=1.1.5
- libarrow=16.1.0
- libarrow-acero=16.1.0
- libarrow-dataset=16.1.0
- libarrow-substrait=16.1.0
- libasprintf=0.25.1
- libblas=3.11.0
- libbrotlicommon=1.1.0
- libbrotlidec=1.1.0
- libbrotlienc=1.1.0
- libcblas=3.11.0
- libclang-cpp21.1=21.1.0
- libclang13=21.1.0
- libcrc32c=1.1.2
- libcups=2.3.3
- libcurl=8.18.0
- libdeflate=1.25
- libdrm=2.4.127
- libedit=3.1.20250104
- libegl=1.7.0
- libev=4.33
- libevent=2.1.12
- libexpat=2.8.1
- libffi=3.5.2
- libfreetype=2.14.3
- libfreetype6=2.14.3
- libgcc=15.2.0
- libgcc-devel_linux-64=15.2.0
- libgcc-ng=15.2.0
- libgettextpo=0.25.1
- libgfortran=15.2.0
- libgfortran-ng=15.2.0
- libgfortran5=15.2.0
- libgl=1.7.0
- libglib=2.86.2
- libglvnd=1.7.0
- libglx=1.7.0
- libgomp=15.2.0
- libgoogle-cloud=2.36.0
- libgoogle-cloud-storage=2.36.0
- libgrpc=1.67.1
- libiconv=1.18
- libidn2=2.3.8
- libjpeg-turbo=3.1.4.1
- liblapack=3.11.0
- liblapacke=3.11.0
- libllvm21=21.1.0
- liblzma=5.8.3
- libml_dtypes-headers=0.5.4
- libnghttp2=1.68.1
- libnsl=2.0.1
- libntlm=1.8
- libopenblas=0.3.33
- libopengl=1.7.0
- libparquet=16.1.0
- libpciaccess=0.19
- libpng=1.6.58
- libpq=17.7
- libprotobuf=5.28.3
- libre2-11=2024.07.02
- libsanitizer=15.2.0
- libsodium=1.0.20
- libsqlite=3.53.1
- libssh2=1.11.1
- libstdcxx=15.2.0
- libstdcxx-devel_linux-64=15.2.0
- libstdcxx-ng=15.2.0
- libtensorflow_cc=2.18.0
- libtensorflow_framework=2.18.0
- libthrift=0.21.0
- libtiff=4.7.1
- libunistring=0.9.10
- libutf8proc=2.10.0
- libuuid=2.42.1
- libwebp-base=1.6.0
- libxcb=1.17.0
- libxcrypt=4.4.36
- libxgboost=3.2.0
- libxkbcommon=1.11.0
- libxml2=2.13.9
- libxslt=1.1.43
- libzlib=1.3.2
- llvmlite=0.47.0
- loguru=0.7.3
- lxml=6.0.2
- lz4=4.4.5
- lz4-c=1.10.0
- make=4.4.1
- markdown=3.10.2
- markdown-it-py=4.2.0
- marko=2.2.2
- markupsafe=3.0.3
- matplotlib=3.10.8
- matplotlib-base=3.10.8
- matplotlib-inline=0.2.2
- mdurl=0.1.2
- ml_dtypes=0.4.0
- mmseqs2=18.8cc5c
- mpfr=4.2.2
- mpi=1.0
- munkres=1.1.4
- mypy_extensions=1.1.0
- namex=0.1.0
- natsort=8.4.0
- ncbi-amrfinderplus=4.2.7
- ncbi-vdb=3.4.1
- ncurses=6.6
- networkx=3.6.1
- numba=0.65.1
- numpy=2.4.2
- openjpeg=2.5.4
- openldap=2.6.10
- openmpi=4.1.6
- openssl=3.6.2
- opt_einsum=3.4.0
- optree=0.19.1
- orc=2.1.1
- packaging=26.2
- pandas=2.3.3
- pandera=0.31.1
- pandera-base=0.31.1
- pango=1.56.4
- parsl=2026.2.23
- parso=0.8.7
- patsy=1.0.2
- pcre2=10.46
- perl=5.32.1
- perl-archive-tar=3.08
- perl-carp=1.50
- perl-common-sense=3.75
- perl-compress-raw-bzip2=2.214
- perl-compress-raw-zlib=2.214
- perl-encode=3.21
- perl-exporter=5.74
- perl-exporter-tiny=1.002002
- perl-extutils-makemaker=7.70
- perl-io-compress=2.216
- perl-io-zlib=1.15
- perl-json=4.11
- perl-json-xs=4.04
- perl-list-moreutils=0.430
- perl-list-moreutils-xs=0.430
- perl-parent=0.243
- perl-pathtools=3.75
- perl-scalar-list-utils=1.70
- perl-storable=3.15
- perl-types-serialiser=1.01
- petl=1.7.17
- pexpect=4.9.0
- pillow=12.2.0
- pip=26.1.1
- pixman=0.46.4
- pluggy=1.6.0
- prodigal=2.6.3
- prompt-toolkit=3.0.52
- protobuf=5.28.3
- psutil=7.2.2
- pthread-stubs=0.4
- ptyprocess=0.7.0
- pure_eval=0.2.3
- py-xgboost=3.2.0
- pyarrow=16.1.0
- pyarrow-core=16.1.0
- pycparser=3.0
- pydantic=2.13.4
- pydantic-core=2.46.4
- pygments=2.20.0
- pyhmmer=0.12.1
- pyparsing=3.3.2
- pyrodigal=3.7.1
- pyrodigal-gv=0.3.2
- pyside6=6.9.2
- pysocks=1.7.1
- pytest=9.0.3
- python=3.12.13
- python-crfsuite=0.9.12
- python-dateutil=2.9.0.post0
- python-flatbuffers=25.9.23
- python-gil=3.12.13
- python-slugify=8.0.4
- python-tzdata=2026.2
- python_abi=3.12
- pytz=2026.2
- pyyaml=6.0.3
- pyzmq=27.1.0
- q2-amrfinderplus=2026.4.1
- q2-demux=2026.4.0
- q2-feature-table=2026.4.0
- q2-metadata=2026.4.0
- q2-mystery-stew=2026.4.0
- q2-types=2026.4.0
- q2-viromics=2026.4.0
- q2-vizard=2026.4.0
- q2cli=2026.4.0
- q2templates=2026.4.0
- qhull=2020.2
- qiime2=2026.4.0
- qt6-main=6.9.2
- r-base=4.5.2
- r-here=1.0.2
- r-jsonlite=2.0.0
- r-lattice=0.22_9
- r-matrix=1.7_5
- r-png=0.1_9
- r-rappdirs=0.3.4
- r-rcpp=1.1.1_1.1
- r-rcpptoml=0.2.3
- r-reticulate=1.45.0
- r-rlang=1.2.0
- r-rprojroot=2.1.1
- r-withr=3.0.2
- rachis=2026.4.0
- re2=2024.07.02
- readline=8.3
- referencing=0.37.0
- requests=2.34.2
- rfc3986=2.0.0
- rich=15.0.0
- rich-click=1.9.7
- rnanorm=2.1.0
- rpds-py=0.30.0
- s2n=1.5.14
- samtools=1.23
- scikit-bio=0.7.2
- scikit-learn=1.8.0
- scipy=1.17.1
- screed=1.0.4
- seaborn=0.13.2
- seaborn-base=0.13.2
- sed=4.10
- setproctitle=1.3.7
- setuptools=82.0.1
- shellingham=1.5.4
- simpleeval=1.0.7
- six=1.17.0
- snappy=1.2.2
- sortedcontainers=2.4.0
- spades=4.2.0
- stack_data=0.6.3
- statsmodels=0.14.6
- stringcase=1.2.0
- sysroot_linux-64=2.28
- tabulate=0.10.0
- taxopy=0.14.0
- tblib=3.2.2
- tensorboard=2.18.0
- tensorboard-data-server=0.7.0
- tensorflow=2.18.0
- tensorflow-base=2.18.0
- tensorflow-estimator=2.18.0
- termcolor=3.3.0
- text-unidecode=1.3
- threadpoolctl=3.6.0
- tk=8.6.13
- tktable=2.10
- tomli=2.4.1
- tomlkit=0.15.0
- tornado=6.5.5
- tqdm=4.67.3
- traitlets=5.15.0
- typeguard=4.5.2
- typer=0.26.2
- typing-extensions=4.15.0
- typing-inspection=0.4.2
- typing_extensions=4.15.0
- typing_inspect=0.9.0
- tzdata=2025c
- tzlocal=5.3.1
- unicodedata2=17.0.1
- unifrac=1.5.1
- unifrac-binaries=1.5.1
- urllib3=2.5.0
- validators=0.35.0
- wayland=1.25.0
- wcwidth=0.7.0
- werkzeug=3.1.8
- wget=1.21.4
- wheel=0.47.0
- widgetsnbextension=4.0.15
- wrapt=2.2.1
- xcb-util=0.4.1
- xcb-util-cursor=0.1.6
- xcb-util-image=0.4.0
- xcb-util-keysyms=0.4.1
- xcb-util-renderutil=0.3.10
- xcb-util-wm=0.4.2
- xgboost=3.2.0
- xkeyboard-config=2.47
- xorg-libice=1.1.2
- xorg-libsm=1.2.6
- xorg-libx11=1.8.13
- xorg-libxau=1.0.12
- xorg-libxcomposite=0.4.7
- xorg-libxcursor=1.2.3
- xorg-libxdamage=1.1.6
- xorg-libxdmcp=1.1.5
- xorg-libxext=1.3.7
- xorg-libxfixes=6.0.2
- xorg-libxi=1.8.3
- xorg-libxrandr=1.5.5
- xorg-libxrender=0.9.12
- xorg-libxt=1.3.1
- xorg-libxtst=1.2.5
- xorg-libxxf86vm=1.1.7
- yaml=0.2.5
- zeromq=4.3.5
- zipp=4.1.0
- zlib=1.3.2
- zlib-ng=2.3.3
- zstandard=0.25.0
- zstd=1.5.7