[project]
name = "rcsb-mcp"
version = "0.15.0"
description = "An MCP server for interrogating PDB structures — search, inspect, and cross-reference across the RCSB Search, Data, and Sequence Coordinates APIs"
readme = "README.md"
requires-python = ">=3.10"
dependencies = [
    # Upper bound is load-bearing: mcp 2.0.0 (2026-07-28) DELETED mcp.server.fastmcp
    # (renamed to mcp.server.mcpserver, FastMCP -> MCPServer), so an unpinned resolve
    # breaks `from mcp.server.fastmcp import FastMCP` in server.py at import time —
    # red CI, and in the image a container that dies before it binds its port.
    # Lift it only together with the 2.x migration.
    "mcp>=1.2.0,<2",
    "httpx>=0.27",
    "uvicorn>=0.30",
    "jinja2>=3.1",
    "pydantic>=2.0",
    # Imported directly by attribute_types for TypedDict, which pydantic requires
    # to come from here on Python < 3.12. Declared rather than leaned on as a
    # pydantic transitive.
    "typing-extensions>=4.12",
]

[project.optional-dependencies]
# Shared store for the short report link (…/r/<id>) so it resolves across replicas.
# Only needed for multi-replica HTTP deployment; install with `.[redis]`. Without it,
# short links fall back to the self-contained …/r?d= link (see report/store.py).
redis = ["redis>=5.0"]

[dependency-groups]
# Test deps. Declared here (not left to a manual venv install) so `uv sync` / `uv run`
# keep them installed — otherwise a sync evicts pytest and the suite stops collecting.
# pyflakes backs tests/test_static_names.py (undefined-name / unused-import tripwire).
dev = ["pytest>=8", "pyflakes>=3"]

[project.scripts]
rcsb-mcp = "rcsb_mcp.server:main"

# `hatch test` (CI) builds its own env and ignores [dependency-groups] — without this,
# tests/test_static_names.py dies collecting on `import pyflakes`. Keep the pin in sync
# with the dev group above. (Hatch envs have no dependency-groups option as of 1.14.)
[tool.hatch.envs.hatch-test]
extra-dependencies = ["pyflakes>=3"]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["src/rcsb_mcp"]