{ "baseline_file": "benchmarks/mfass/results/baseline-kmer-position-v2.predictions.tsv", "candidate_file": "benchmarks/mfass/results/spliceai-1.3.1.predictions.tsv", "capacity": 100, "seed": 20260914, "denominators": { "baseline_scored": 8324, "candidate_scored": 8194, "common": 8194, "baseline_only": 130, "candidate_only": 0 }, "on_common_subset": { "baseline": { "n": 8194, "positives": 308, "prevalence": 0.03758847937515255, "capacity": 100, "precision_at_capacity": 0.61, "recall_at_capacity": 0.19805194805194806, "average_precision_sklearn": 0.28966161265899004, "auroc": 0.777116935815896 }, "candidate": { "n": 8194, "positives": 308, "prevalence": 0.03758847937515255, "capacity": 100, "precision_at_capacity": 0.64, "recall_at_capacity": 0.2077922077922078, "average_precision_sklearn": 0.2986855472760137, "auroc": 0.8055241740253153 } }, "independent_groups": 454, "paired": { "precision_at_capacity": { "metric": "precision_at_capacity", "observed_delta": 0.030000000000000027, "resample_mean_delta": 0.02191453198707782, "bootstrap_bias": -0.008085468012922207, "mean_delta": 0.02191453198707782, "realised_capacity": { "requested": 100, "mean": 100.064, "min": 80, "max": 132, "list_fraction": 0.0122 }, "ci95_low": -0.06797782219683987, "ci95_high": 0.10682229202360537, "draws": 2000, "single_class_skipped": 0, "independent_groups": 454 }, "average_precision_sklearn": { "metric": "average_precision_sklearn", "observed_delta": 0.009023934617023666, "resample_mean_delta": 0.009920541915963815, "bootstrap_bias": 0.0008966072989401493, "mean_delta": 0.009920541915963815, "realised_capacity": { "requested": 100, "mean": 100.064, "min": 80, "max": 132, "list_fraction": 0.0122 }, "ci95_low": -0.03938438251790345, "ci95_high": 0.06128588553288169, "draws": 2000, "single_class_skipped": 0, "independent_groups": 454 }, "auroc": { "metric": "auroc", "observed_delta": 0.02840723820941926, "resample_mean_delta": 0.02851009637784287, "bootstrap_bias": 0.0001028581684236092, "mean_delta": 0.02851009637784287, "realised_capacity": { "requested": 100, "mean": 100.064, "min": 80, "max": 132, "list_fraction": 0.0122 }, "ci95_low": -0.004083910748515171, "ci95_high": 0.06370719304519386, "draws": 2000, "single_class_skipped": 0, "independent_groups": 454 } } }